PDB_ID_chain stringlengths 6 10 | PDB_ID stringlengths 4 4 | Title stringlengths 4 230 | Mutation(s) stringclasses 2
values | Classification stringclasses 305
values | Deposit_date stringdate 1976-03-17 00:00:00 2026-01-20 00:00:00 | Release_date stringdate 1976-05-19 00:00:00 2026-02-25 00:00:00 | Method stringclasses 5
values | Resolution stringclasses 459
values | R_free stringclasses 227
values | R_work stringclasses 211
values | PMID stringlengths 4 8 | DOI stringlengths 4 68 | Model_index int64 0 76 | Asym_ID_type stringclasses 2
values | Ab_type stringclasses 30
values | H_subgroup stringclasses 8
values | L_subgroup stringclasses 19
values | H_chain_ID stringclasses 60
values | L_chain_ID stringclasses 58
values | H_fas_seq stringlengths 4 919 | L_fas_seq stringlengths 4 627 | H_filled_pdb_seq stringlengths 4 896 | L_filled_pdb_seq stringlengths 4 523 | H_mean_radius float64 0 79.7 | L_mean_radius float64 0 84.3 | H_fas_seq_len int64 0 919 | L_fas_seq_len int64 0 627 | H_pdb_seq_len int64 0 879 | L_pdb_seq_len int64 0 523 | H_filled_seq_len int64 0 896 | L_filled_seq_len int64 0 523 | HL_inf_res_num int64 0 175 | H_mol_name stringlengths 2 331 | L_mol_name stringlengths 2 151 | H_species stringclasses 68
values | L_species stringclasses 42
values | Ag_chain_ID(s) stringclasses 279
values | Ag_type(s) stringclasses 16
values | Ag_mol_name(s) stringlengths 2 390 | Ag_species stringclasses 743
values | Ab_ag_inf_res_num stringlengths 1 11 | CDR_inf_res_num stringclasses 444
values | CDR_inf_res_ratio stringlengths 1 19 | hl_label stringclasses 3
values | split stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8d01_A_B | 8d01 | the domain-swaped dimer of the hiv-1 cd4bs targeting antibody 21n13 | no | viral protein/immune system | 2022-05-25 | 2023-12-13 | x-ray diffraction | 2.46 | 0.229 | 0.189 | 39213338 | 10.1126/sciimmunol.adk9550 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV1 | A | B | QVQLQESGPGRVKPSETLSLTCAVSDDSFGSSYFYWSWIRQAPGKGLEWIGYIAYSGGVRYNPSLSSRVTISRNIHERQFYLRLTSMTAADTAVYYCARHCEDDYGYYSAAQSYGLDSWGQGIAVTVSPSTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIQMTQSPSSLSASVGDRVTITCRTSENVNNCLNWYQQKPGKAPKLLIYRTSTLQRGVPSRFSGTGSGTDYTLTISSLQSEDFGTYYCQHYYGTPLTFGGGTMVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | VQLQESGPGRVKPSETLSLTCAVSDDSFGSSYFYWSWIRQAPGKGLEWIGYIAYSGGVRYNPSLSSRVTISRNIHERQFYLRLTSMTAADTAVYYCARHCEDDYGYYSAAQSYGLDSWGQGIAVTVSPSTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIQMTQSPSSLSASVGDRVTITCRTSENVNNCLNWYQQKPGKAPKLLIYRTSTLQRGVPSRFSGTGSGTDYTLTISSLQSEDFGTYYCQHYYGTPLTFGGGTMVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 26.153976 | 22.33893 | 225 | 213 | 206 | 213 | 224 | 213 | 44 | 21n13 fab heavy chain | 21n13 fab light chain | macaca mulatta | macaca mulatta | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
8d01_H_L | 8d01 | the domain-swaped dimer of the hiv-1 cd4bs targeting antibody 21n13 | no | viral protein/immune system | 2022-05-25 | 2023-12-13 | x-ray diffraction | 2.46 | 0.229 | 0.189 | 39213338 | 10.1126/sciimmunol.adk9550 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV1 | H | L | QVQLQESGPGRVKPSETLSLTCAVSDDSFGSSYFYWSWIRQAPGKGLEWIGYIAYSGGVRYNPSLSSRVTISRNIHERQFYLRLTSMTAADTAVYYCARHCEDDYGYYSAAQSYGLDSWGQGIAVTVSPSTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIQMTQSPSSLSASVGDRVTITCRTSENVNNCLNWYQQKPGKAPKLLIYRTSTLQRGVPSRFSGTGSGTDYTLTISSLQSEDFGTYYCQHYYGTPLTFGGGTMVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | QVQLQESGPGRVKPSETLSLTCAVSDDSFGSSYFYWSWIRQAPGKGLEWIGYIAYSGGVRYNPSLSSRVTISRNIHERQFYLRLTSMTAADTAVYYCARHCEDDYGYYSAAQSYGLDSWGQGIAVTVSPSTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | DIQMTQSPSSLSASVGDRVTITCRTSENVNNCLNWYQQKPGKAPKLLIYRTSTLQRGVPSRFSGTGSGTDYTLTISSLQSEDFGTYYCQHYYGTPLTFGGGTMVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 27.17633 | 22.543407 | 225 | 213 | 223 | 213 | 223 | 213 | 48 | 21n13 fab heavy chain | 21n13 fab light chain | macaca mulatta | macaca mulatta | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7xw7_A | 7xw7 | tshr-k1-70 complex | no | membrane protein | 2022-05-26 | 2022-08-17 | electron microscopy | 5.5 | N.A. | N.A. | 35940204 | 10.1038/s41586-022-05173-3 | 0 | auth_asym_id | scFv | N.A. | N.A. | A | N.A. | EVQLVQSGAEVKKPGQSLKISCKASGYSLTDNWIGWVRQKPGKGLEWMGIIYPGDSDTRYSPSFQGQVTISADKSINTAYLQWSSLKASDTAIYYCVGLDWNYNPLRYWGPGTLVTVSSVLTQPPSVSAAPGQKVTISCSGSSSDIGSNYVSWYQQFPGTAPKLLIYDNNKRPSAIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSRLGIAVFGGGTQLTVL | N.A. | EVQLVQSGAEVKKPGQSLKISCKASGYSLTDNWIGWVRQKPGKGLEWMGIIYPGDSDTRYSPSFQGQVTISADKSINTAYLQWSSLKASDTAIYYCVGLDWNYNPLRYWGPGTLVTVSSVLTQPPSVSAAPGQKVTISCSGSSSDIGSNYVSWYQQFPGTAPKLLIYDNNKRPSAIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSRLGIAVFGGGTQLTVL | N.A. | 17.621504 | 0 | 227 | 0 | 227 | 0 | 227 | 0 | 0 | k1-70 scfv | N.A. | homo sapiens | N.A. | R | protein | thyrotropin receptor | homo sapiens | 59 | 26 | 0.9 | H_only | train |
7xw9_S | 7xw9 | cryo-em structure of the trh-bound human trhr-gq complex | no | structural protein | 2022-05-26 | 2022-12-28 | electron microscopy | 2.7 | N.A. | N.A. | 36280665 | 10.1038/s41421-022-00477-0 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKGSLEVLFQGPAAAHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.496613 | 0 | 269 | 0 | 231 | 0 | 246 | 0 | 0 | single fab chain (svfv16) | N.A. | synthetic construct | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(q) subunit alpha;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;rattus norvegicus | 30;24 | 20;10 | 0.95;0.77 | H_only | train |
8d0z_H_L | 8d0z | s728-1157 igg in complex with sars-cov-2-6p-mut7 spike protein (focused refinement) | yes | viral protein/immune system | 2022-05-26 | 2023-03-22 | electron microscopy | 3.7 | N.A. | N.A. | 36862518 | 10.1172/JCI166844 | 0 | auth_asym_id | VH:VL | IGHV3 | IGLV3 | H | L | EVQLVESGGGLVQPGGSLRLSCAASGLLVSRNYMNWVRQAPGKGLEWVSIIYSGGSTFYADSVEGRFTISRDESKNTLYLQMNSLRTDDTAVYYCARDLSDYGGIDCWGQGTLVTVSS | ELTQPLSVSMALGQTARISCGGDNVGSQNVHWYQQRPGQAPVLVIYRDSNRPSGIPERFSGSKSGNTATLTISRAQAGDEADYYCQVWDSSTVAFGGGTKLTVL | EVQLVESGGGLVQPGGSLRLSCAASGLLVSRNYMNWVRQAPGKGLEWVSIIYSGGSTFYADSVEGRFTISRDESKNTLYLQMNSLRTDDTAVYYCARDLSDYGGIDCWGQGTLVTVS | ELTQPLSVSMALGQTARISCGGDNVGSQNVHWYQQRPGQAPVLVIYRDSNRPSGIPERFSGSKSGNTATLTISRAQAGDEADYYCQVWDSSTVAFGGGTKLT | 13.47795 | 12.7334 | 118 | 104 | 117 | 102 | 117 | 102 | 46 | s728-1157 fab heavy chain variable region | s728-1157 fab light chain variable region | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 65 | 25 | 0.74 | HL | train |
8d0y_D_E | 8d0y | crystal structure of hiv-1 bg505 sosipv8 trimer in complex with cd4bs targeting antibody 21n13 and interface targeting antibody 35o22 at 4.7 angstrom | no | viral protein/immune system | 2022-05-26 | 2023-07-19 | x-ray diffraction | 4.7 | 0.298 | 0.268 | 39213338 | 10.1126/sciimmunol.adk9550 | 0 | auth_asym_id | VH:VL | IGHV1 | IGLV2 | D | E | QGQLVQSGATTTKPGSSVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVNMTTDTEVPVTSFTSTGAAYMEIRNLTSDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLT | VLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQS | QGQLVQSGATTTKPGSSVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVNMTTDTEVPVTSFTSTGAAYMEIRNLTSDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLT | VLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQS | 14.512092 | 13.742917 | 128 | 111 | 128 | 111 | 128 | 111 | 53 | 35o22scfv heavy chain variable | 35o22scfv light chain variable | macaca mulatta | macaca mulatta | B | protein | bg505sosipv8 gp41 | human immunodeficiency virus 1 | 27 | 11 | 0.79 | HL | train |
8d0y_H_L | 8d0y | crystal structure of hiv-1 bg505 sosipv8 trimer in complex with cd4bs targeting antibody 21n13 and interface targeting antibody 35o22 at 4.7 angstrom | no | viral protein/immune system | 2022-05-26 | 2023-07-19 | x-ray diffraction | 4.7 | 0.298 | 0.268 | 39213338 | 10.1126/sciimmunol.adk9550 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV1 | H | L | QVQLQESGPGRVKPSETLSLTCAVSDDSFGSSYFYWSWIRQAPGKGLEWIGYIAYSGGVRYNPSLSSRVTISRNIHERQFYLRLTSMTAADTAVYYCARHCEDDYGYYSAAQSYGLDSWGQGIAVTVSPSTKGPSVFPLAPTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | DIQMTQSPSSLSASVGDRVTITCRTSENVNNCLNWYQQKPGKAPKLLIYRTSTLQRGVPSRFSGTGSGTDYTLTISSLQSEDFGTYYCQHYYGTPLTFGGGTMVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | QVQLQESGPGRVKPSETLSLTCAVSDDSFGSSYFYWSWIRQAPGKGLEWIGYIAYSGGVRYNPSLSSRVTISRNIHERQFYLRLTSMTAADTAVYYCARHCEDDYGYYSAAQSYGLDSWGQGIAVTVSPSTKGPSVFPLAPTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | DIQMTQSPSSLSASVGDRVTITCRTSENVNNCLNWYQQKPGKAPKLLIYRTSTLQRGVPSRFSGTGSGTDYTLTISSLQSEDFGTYYCQHYYGTPLTFGGGTMVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 23.812326 | 21.566435 | 225 | 213 | 225 | 213 | 225 | 213 | 103 | 21n13 fab heavy chain | 21n13 fab light chain | macaca mulatta | macaca mulatta | G | protein | bg505sosipv8 gp120 | human immunodeficiency virus 1 | 78 | 18 | 0.58 | HL | train |
8d21_H_L | 8d21 | cryo-em structure of the vrc321 clinical trial, vaccine-elicited, human antibody 1b06 in complex with a stabilized nc99 ha trimer | no | immune system/viral protein | 2022-05-27 | 2023-04-12 | electron microscopy | 3.96 | N.A. | N.A. | 37075126 | 10.1126/scitranslmed.ade4976 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | H | L | EVQLLESGGGLVRPGGSLRLSCKASGFSFSRHGLSWVRQAPGKGLEWVSSISGSSLSRYYADSVKGRFTISRDNSQNTLYLQMNSLRVEDTAVFYCVKDRLDTAVPRGWFDSWGQGILVTVSS | EIVMTQSPATLSVSPGDRATLSCRASQSVSTELAWYQQKPGQAPRLLIYGASTRATDIPARFSGSGSGTEFTLTISSLQSEDFAVYFCQQYNNWPPITFGQGTRLEIK | EVQLLESGGGLVRPGGSLRLSCKASGFSFSRHGLSWVRQAPGKGLEWVSSISGSSLSRYYADSVKGRFTISRDNSQNTLYLQMNSLRVEDTAVFYCVKDRLDTAVPRGWFDSWGQGILVTVSS | EIVMTQSPATLSVSPGDRATLSCRASQSVSTELAWYQQKPGQAPRLLIYGASTRATDIPARFSGSGSGTEFTLTISSLQSEDFAVYFCQQYNNWPPITFGQGTRLEIK | 14.221828 | 13.594703 | 123 | 108 | 123 | 108 | 123 | 108 | 45 | 1b06 heavy chain | 1b06 light chain | homo sapiens | homo sapiens | B | protein | hemagglutinin ha2 chain | influenza a virus | 39 | 15 | 0.83 | HL | train |
8d21_E_F | 8d21 | cryo-em structure of the vrc321 clinical trial, vaccine-elicited, human antibody 1b06 in complex with a stabilized nc99 ha trimer | no | immune system/viral protein | 2022-05-27 | 2023-04-12 | electron microscopy | 3.96 | N.A. | N.A. | 37075126 | 10.1126/scitranslmed.ade4976 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | E | F | EVQLLESGGGLVRPGGSLRLSCKASGFSFSRHGLSWVRQAPGKGLEWVSSISGSSLSRYYADSVKGRFTISRDNSQNTLYLQMNSLRVEDTAVFYCVKDRLDTAVPRGWFDSWGQGILVTVSS | EIVMTQSPATLSVSPGDRATLSCRASQSVSTELAWYQQKPGQAPRLLIYGASTRATDIPARFSGSGSGTEFTLTISSLQSEDFAVYFCQQYNNWPPITFGQGTRLEIK | EVQLLESGGGLVRPGGSLRLSCKASGFSFSRHGLSWVRQAPGKGLEWVSSISGSSLSRYYADSVKGRFTISRDNSQNTLYLQMNSLRVEDTAVFYCVKDRLDTAVPRGWFDSWGQGILVTVSS | EIVMTQSPATLSVSPGDRATLSCRASQSVSTELAWYQQKPGQAPRLLIYGASTRATDIPARFSGSGSGTEFTLTISSLQSEDFAVYFCQQYNNWPPITFGQGTRLEIK | 14.214336 | 13.582625 | 123 | 108 | 123 | 108 | 123 | 108 | 42 | 1b06 heavy chain | 1b06 light chain | homo sapiens | homo sapiens | C | protein | hemagglutinin ha2 chain | influenza a virus | 38 | 15 | 0.88 | HL | train |
8d21_J_K | 8d21 | cryo-em structure of the vrc321 clinical trial, vaccine-elicited, human antibody 1b06 in complex with a stabilized nc99 ha trimer | no | immune system/viral protein | 2022-05-27 | 2023-04-12 | electron microscopy | 3.96 | N.A. | N.A. | 37075126 | 10.1126/scitranslmed.ade4976 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | J | K | EVQLLESGGGLVRPGGSLRLSCKASGFSFSRHGLSWVRQAPGKGLEWVSSISGSSLSRYYADSVKGRFTISRDNSQNTLYLQMNSLRVEDTAVFYCVKDRLDTAVPRGWFDSWGQGILVTVSS | EIVMTQSPATLSVSPGDRATLSCRASQSVSTELAWYQQKPGQAPRLLIYGASTRATDIPARFSGSGSGTEFTLTISSLQSEDFAVYFCQQYNNWPPITFGQGTRLEIK | EVQLLESGGGLVRPGGSLRLSCKASGFSFSRHGLSWVRQAPGKGLEWVSSISGSSLSRYYADSVKGRFTISRDNSQNTLYLQMNSLRVEDTAVFYCVKDRLDTAVPRGWFDSWGQGILVTVSS | EIVMTQSPATLSVSPGDRATLSCRASQSVSTELAWYQQKPGQAPRLLIYGASTRATDIPARFSGSGSGTEFTLTISSLQSEDFAVYFCQQYNNWPPITFGQGTRLEIK | 14.221196 | 13.577197 | 123 | 108 | 123 | 108 | 123 | 108 | 43 | 1b06 heavy chain | 1b06 light chain | homo sapiens | homo sapiens | G | protein | hemagglutinin ha2 chain | influenza a virus | 40 | 16 | 0.89 | HL | train |
8d29_A_B | 8d29 | crystal structure of theophylline aptamer - apo form | no | rna/immune system | 2022-05-28 | 2022-11-30 | x-ray diffraction | 1.81 | 0.211 | 0.175 | 36413497 | 10.1073/pnas.2213117119 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | A | B | EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.262453 | 23.410797 | 229 | 214 | 223 | 213 | 223 | 213 | 100 | fab heavy chain | fab light chain | homo sapiens | homo sapiens | C | RNA | rna (34-mer) | synthetic construct | 32 | 21 | 0.91 | HL | train |
8d29_H_L | 8d29 | crystal structure of theophylline aptamer - apo form | no | rna/immune system | 2022-05-28 | 2022-11-30 | x-ray diffraction | 1.81 | 0.211 | 0.175 | 36413497 | 10.1073/pnas.2213117119 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.281721 | 23.379574 | 229 | 214 | 220 | 214 | 223 | 214 | 99 | fab heavy chain | fab light chain | homo sapiens | homo sapiens | C;R | RNA;RNA | rna (34-mer);rna (34-mer) | synthetic construct;synthetic construct | 17;35 | 6;21 | 0.67;0.88 | HL | train |
8d29_D_E | 8d29 | crystal structure of theophylline aptamer - apo form | no | rna/immune system | 2022-05-28 | 2022-11-30 | x-ray diffraction | 1.81 | 0.211 | 0.175 | 36413497 | 10.1073/pnas.2213117119 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | D | E | EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.355402 | 23.379152 | 229 | 214 | 224 | 213 | 224 | 213 | 101 | fab heavy chain | fab light chain | homo sapiens | homo sapiens | F | RNA | rna (34-mer) | synthetic construct | 32 | 21 | 0.91 | HL | train |
8d29_G_I | 8d29 | crystal structure of theophylline aptamer - apo form | no | rna/immune system | 2022-05-28 | 2022-11-30 | x-ray diffraction | 1.81 | 0.211 | 0.175 | 36413497 | 10.1073/pnas.2213117119 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | G | I | EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPNTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.081797 | 23.347395 | 229 | 214 | 218 | 213 | 223 | 213 | 102 | fab heavy chain | fab light chain | homo sapiens | homo sapiens | J | RNA | rna (34-mer) | synthetic construct | 33 | 20 | 0.91 | HL | train |
8d36_H_L | 8d36 | crystal structure of sars-cov-2 fusion peptide in complex with neutralizing antibody cov44-62 | no | immune system | 2022-05-31 | 2022-07-27 | x-ray diffraction | 1.45 | 0.219 | 0.197 | 35857439 | 10.1126/science.abq3773 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGLV2 | H | L | QMQLMQSGAEVKKPGASVTVSCKASGDTFSDYRIHWVRQAPGQGLEWMGRMNPKSGDTNFAQKFQGRVTMTRDMSINTAYMTLSGLTFDDTALYYCASLLIVGGFDPLDDFEVWGQGTMVTISSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QSALTQPPSASGSPGQSVTISCSGTSSDVGGYNFVSWYQHHPGKAPKILIYEVTKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYGGTNNLLFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | QMQLMQSGAEVKKPGASVTVSCKASGDTFSDYRIHWVRQAPGQGLEWMGRMNPKSGDTNFAQKFQGRVTMTRDMSINTAYMTLSGLTFDDTALYYCASLLIVGGFDPLDDFEVWGQGTMVTISSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | QSALTQPPSASGSPGQSVTISCSGTSSDVGGYNFVSWYQHHPGKAPKILIYEVTKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYGGTNNLLFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP | 20.649143 | 23.799034 | 227 | 216 | 218 | 212 | 225 | 212 | 99 | neutralizing antibody cov44-62 heavy chain | neutralizing antibody cov44-62 light chain | homo sapiens | homo sapiens | F | peptide | spike protein s2 fusion peptide | severe acute respiratory syndrome coronavirus 2 | 39 | 22 | 0.85 | HL | train |
7xy3_D | 7xy3 | cryo-em structure of sars-cov-2 spike in complex with vhh14 | yes | viral protein/immune system | 2022-05-31 | 2023-09-13 | electron microscopy | 4.6 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QLQLVESGGGSVQSGGSLRLSCAASGYTYKTYYETYSMGWFRQAPGKEREGVAAINSDGETSYADSVKGRFTISQDNAKKTLYLQMNSLKPEDMGMYYCAADPAWQPAFLLLRSSGYNYWGQGTQVTVSSAHHSEDPHGQAGQHHHHHHGAYPYDVPDYAS | N.A. | QLQLVESGGGSVQSGGSLRLSCAASGYTYKTYYETYSMGWFRQAPGKEREGVAAINSDGETSYADSVKGRFTISQDNAKKTLYLQMNSLKPEDMGMYYCAADPAWQPAFLLLRSSGYNYWGQGTQVTVSS | N.A. | 14.02977 | 0 | 161 | 0 | 130 | 0 | 130 | 0 | 0 | vhh14 | N.A. | camelus bactrianus | N.A. | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 43 | 20 | 1 | H_only | train |
8a1e_B_C | 8a1e | rabies virus glycoprotein in complex with fab fragments of 17c7 and 1112-1 neutralizing antibodies | no | viral protein | 2022-06-01 | 2022-08-17 | electron microscopy | 2.83 | N.A. | N.A. | 35985336 | 10.1016/j.chom.2022.07.014 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | B | C | QVQLQQPGAELLKPGTSMKLSCKASGYTFSNYWMHWVKLRPGQGFEWIGEINPFNGGTNFNEKFKSKATLTVDRSSSTAYMQLSSVTSEDSAVYYCTIPLSDYGDWFFAVWGAGTTVTVSS | DIVMTQSHKFMSTSIGDRVSITCKASQDVSTAVAWYRQKPGQSPKLLIYSASYRSTGVPDRFTGSGSGTDFTFTISSVQAEDLAVFYCQQHYSAPLTFGAGTKLELK | VQLQQPGAELLKPGTSMKLSCKASGYTFSNYWMHWVKLRPGQGFEWIGEINPFNGGTNFNEKFKSKATLTVDRSSSTAYMQLSSVTSEDSAVYYCTIPLSDYGDWFFAVWGAGTTVT | DIVMTQSHKFMSTSIGDRVSITCKASQDVSTAVAWYRQKPGQSPKLLIYSASYRSTGVPDRFTGSGSGTDFTFTISSVQAEDLAVFYCQQHYSAPLTFGAGTKL | 13.508605 | 12.77529 | 121 | 107 | 117 | 101 | 117 | 104 | 46 | fab 1112-1 heavy chain variable domain | fab 1112-1 light chain variable domain | mus musculus | mus musculus | A | protein | glycoprotein | rabies virus strain pasteur vaccin | 56 | 21 | 0.78 | HL | train |
8a1e_D_E | 8a1e | rabies virus glycoprotein in complex with fab fragments of 17c7 and 1112-1 neutralizing antibodies | no | viral protein | 2022-06-01 | 2022-08-17 | electron microscopy | 2.83 | N.A. | N.A. | 35985336 | 10.1016/j.chom.2022.07.014 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | D | E | EVQLVESGGGVVQPGRSLRLSCAASGFTFSTYAMHWVRQAPGKGLEWVAVVSYDGRTKDYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYFCARERFSGAYFDYWGQGTLVTVSS | EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYSCQQRNNWPPTFGGGTKVEIKRA | EVQLVESGGGVVQPGRSLRLSCAASGFTFSTYAMHWVRQAPGKGLEWVAVVSYDGRTKDYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYFCARERFSGAYFDYWGQGTLVTVSS | EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYSCQQRNNWPPTFGGGTKVEIKRA | 13.628255 | 13.511991 | 119 | 109 | 119 | 109 | 119 | 109 | 43 | fab 17c7 heavy chain variable domain | fab 17c7 light chain variable domain | homo sapiens | homo sapiens | A | protein | glycoprotein | rabies virus strain pasteur vaccin | 48 | 21 | 0.88 | HL | train |
8d3a_H_L | 8d3a | crystal structure of dh475 fab in complex with man9 | no | immune system/antigen | 2022-06-01 | 2022-10-12 | x-ray diffraction | 2.9 | 0.272 | 0.229 | 36225920 | 10.3389/fimmu.2022.962939 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV4 | H | L | EVQLLESGGGLVQPGGSLKLSCAASGFAVNNYPMNWVRQAPGKGLEWVSSIIGSGSRASYADSVKGRFTISRDNGKDIVYLQMNNLRADDTALYYCVKDSSTAWWDKPAASEFDFWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK | QLVLTQSPSASASLGASVKLTCTLNSGNTNFAVAWHQQQAGKGPRYLMTINSDGRQSRGDGIPDRFSGSTSGADRYLTISSLHFEDEGDYYCQAWTADLHVFGPGTRVAVVGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLLESGGGLVQPGGSLKLSCAASGFAVNNYPMNWVRQAPGKGLEWVSSIIGSGSRASYADSVKGRFTISRDNGKDIVYLQMNNLRADDTALYYCVKDSSTAWWDKPAASEFDFWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | QLVLTQSPSASASLGASVKLTCTLNSGNTNFAVAWHQQQAGKGPRYLMTINSDGRQSRGDGIPDRFSGSTSGADRYLTISSLHFEDEGDYYCQAWTADLHVFGPGTRVAVVGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT | 22.180023 | 23.91556 | 231 | 217 | 227 | 214 | 227 | 214 | 90 | dh475 fab heavy chain | dh475 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7xy8_H_L | 7xy8 | crystal structure of antibody fab fragment in complex with cd147(emmpirin) | no | protein binding | 2022-06-01 | 2022-11-23 | x-ray diffraction | 2.3 | 0.281 | 0.236 | 36385956 | 10.1155/2022/3552793 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | H | L | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSDFMHWVRQAPGQGLEWMGWIYPGDGDTEYNQKFQGRVTLTRDTSISTAYMELSRLRSDDTAVYYCARGRGYVMDAWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCPAPEFLGGPS | DIQMTQSPSSLSASVGDRVTITCRASQGISNYLNWYQQKPGKAIKPLIYYTSNLQSGVPSRFSGSGSGTDYTLTISSLQPEDFATYFCQQYDSSPRTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSDFMHWVRQAPGQGLEWMGWIYPGDGDTEYNQKFQGRVTLTRDTSISTAYMELSRLRSDDTAVYYCARGRGYVMDAWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESK | DIQMTQSPSSLSASVGDRVTITCRASQGISNYLNWYQQKPGKAIKPLIYYTSNLQSGVPSRFSGSGSGTDYTLTISSLQPEDFATYFCQQYDSSPRTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 21.743221 | 23.147142 | 236 | 214 | 212 | 214 | 218 | 214 | 89 | heavy chain | light chain | synthetic construct | synthetic construct | A | protein | isoform 2 of basigin | homo sapiens | 52 | 19 | 0.66 | HL | train |
7xy8_I_M | 7xy8 | crystal structure of antibody fab fragment in complex with cd147(emmpirin) | no | protein binding | 2022-06-01 | 2022-11-23 | x-ray diffraction | 2.3 | 0.281 | 0.236 | 36385956 | 10.1155/2022/3552793 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | I | M | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSDFMHWVRQAPGQGLEWMGWIYPGDGDTEYNQKFQGRVTLTRDTSISTAYMELSRLRSDDTAVYYCARGRGYVMDAWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCPAPEFLGGPS | DIQMTQSPSSLSASVGDRVTITCRASQGISNYLNWYQQKPGKAIKPLIYYTSNLQSGVPSRFSGSGSGTDYTLTISSLQPEDFATYFCQQYDSSPRTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSDFMHWVRQAPGQGLEWMGWIYPGDGDTEYNQKFQGRVTLTRDTSISTAYMELSRLRSDDTAVYYCARGRGYVMDAWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESK | DIQMTQSPSSLSASVGDRVTITCRASQGISNYLNWYQQKPGKAIKPLIYYTSNLQSGVPSRFSGSGSGTDYTLTISSLQPEDFATYFCQQYDSSPRTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.492615 | 22.986645 | 236 | 214 | 218 | 214 | 218 | 214 | 100 | heavy chain | light chain | synthetic construct | synthetic construct | A;B | protein;protein | isoform 2 of basigin;isoform 2 of basigin | homo sapiens;homo sapiens | 37;38 | 5;17 | 0.31;0.77 | HL | train |
8d47_H_L | 8d47 | fp.006 fab in complex with sars-cov-2 fusion peptide | no | antiviral protein | 2022-06-01 | 2022-12-21 | x-ray diffraction | 2 | 0.238 | 0.184 | 36701425 | 10.1126/sciimmunol.ade0958 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV3 | H | L | EVQLVESGGGVVQPGGSLRLSCAASGFNFNNYALHWVRQAPGKGLEWVAIISYEARNKKYGVSVMGRFSISRDNSKSIMYLEMNSLRVEDTGVYYCARDLFLSDYDRSGYDPTRGGFDHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH | EIVMTQSPATLSVSPGERATLSCRASQSVSSSLAWYQHRFGQAPRLLISGASTRATGIPGRFSGSGSGTEFTLTISSLQSEDVAVYYCQQYGDWPLVTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGVVQPGGSLRLSCAASGFNFNNYALHWVRQAPGKGLEWVAIISYEARNKKYGVSVMGRFSISRDNSKSIMYLEMNSLRVEDTGVYYCARDLFLSDYDRSGYDPTRGGFDHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | EIVMTQSPATLSVSPGERATLSCRASQSVSSSLAWYQHRFGQAPRLLISGASTRATGIPGRFSGSGSGTEFTLTISSLQSEDVAVYYCQQYGDWPLVTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 22.728071 | 22.409857 | 242 | 215 | 225 | 212 | 231 | 212 | 103 | fp.006 heavy chain | fp.006 light chain | homo sapiens | homo sapiens | C | peptide | sars-cov-2 fusion peptide | severe acute respiratory syndrome coronavirus 2 | 31 | 17 | 0.85 | HL | train |
8d47_B_A | 8d47 | fp.006 fab in complex with sars-cov-2 fusion peptide | no | antiviral protein | 2022-06-01 | 2022-12-21 | x-ray diffraction | 2 | 0.238 | 0.184 | 36701425 | 10.1126/sciimmunol.ade0958 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV3 | B | A | EVQLVESGGGVVQPGGSLRLSCAASGFNFNNYALHWVRQAPGKGLEWVAIISYEARNKKYGVSVMGRFSISRDNSKSIMYLEMNSLRVEDTGVYYCARDLFLSDYDRSGYDPTRGGFDHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH | EIVMTQSPATLSVSPGERATLSCRASQSVSSSLAWYQHRFGQAPRLLISGASTRATGIPGRFSGSGSGTEFTLTISSLQSEDVAVYYCQQYGDWPLVTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGVVQPGGSLRLSCAASGFNFNNYALHWVRQAPGKGLEWVAIISYEARNKKYGVSVMGRFSISRDNSKSIMYLEMNSLRVEDTGVYYCARDLFLSDYDRSGYDPTRGGFDHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS | EIVMTQSPATLSVSPGERATLSCRASQSVSSSLAWYQHRFGQAPRLLISGASTRATGIPGRFSGSGSGTEFTLTISSLQSEDVAVYYCQQYGDWPLVTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | 22.750317 | 22.929226 | 242 | 215 | 231 | 213 | 232 | 213 | 105 | fp.006 heavy chain | fp.006 light chain | homo sapiens | homo sapiens | D | peptide | sars-cov-2 fusion peptide | severe acute respiratory syndrome coronavirus 2 | 27 | 16 | 0.89 | HL | train |
8d48_H_L | 8d48 | sd1.040 fab in complex with sars-cov-2 spike 2p glycoprotein | yes | antiviral protein | 2022-06-01 | 2023-01-25 | electron microscopy | 3.7 | N.A. | N.A. | 36701425 | 10.1126/sciimmunol.ade0958 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV4 | H | L | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSFYIHWVRQAPGQGLEWMGIIDPSGGSTSYPQKFQGRVTMTRDTSTSTVYMDLSSLRSEDTAVYYCTRDGSAGDNSWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH | DIVMTQSPDSLAVSLGERATINCKSSRNVLYSSNNKNYLAWYQQKPGQPPKLLIYWASARESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSFYIHWVRQAPGQGLEWMGIIDPSGGSTSYPQKFQGRVTMTRDTSTSTVYMDLSSLRSEDTAVYYCTRDGSAGDNSWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS | DIVMTQSPDSLAVSLGERATINCKSSRNVLYSSNNKNYLAWYQQKPGQPPKLLIYWASARESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.575354 | 24.506317 | 233 | 220 | 223 | 220 | 223 | 220 | 82 | sd1.040 fab heavy chain | sd1.040 fab light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 37 | 16 | 0.84 | HL | train |
7xz5_N | 7xz5 | gpr119-gs-lpc complex | no | membrane protein | 2022-06-02 | 2022-08-24 | electron microscopy | 3.1 | N.A. | N.A. | 35970999 | 10.1038/s41594-022-00816-5 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | MQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | 13.898181 | 0 | 139 | 0 | 128 | 0 | 128 | 0 | 0 | nanobody35 | N.A. | lama glama | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 42;33 | 12;12 | 0.57;0.71 | H_only | train |
8d4r_H_L | 8d4r | crystal structure of mosaic hiv-1 envelope (mosm3.2) in complex with antibodies pgt124 and 35o22 at 3.8 angstrom | no | viral protein/immune system | 2022-06-02 | 2023-12-13 | x-ray diffraction | 3.81 | 0.296 | 0.277 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGLV3 | H | L | VQLQESGPGLVRPSETLSVTCIVSGGSISNYYWTWIRQSPGKGLEWIGYISDRETTTYNPSLNSRAVISRDTSKNQLSLQLRSVTTADTAIYFCATARRGQRIYGVVSFGEFFYYYYMDVWGKGTAVTVSSASTKGPSVFPLAPSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | YVSPLSVALGETARISCGRQALGSRAVQWYQHKPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTTATLTISGVEVGDEADYYCHMWDSRSGFSWSFGGATRLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT | VQLQESGPGLVRPSETLSVTCIVSGGSISNYYWTWIRQSPGKGLEWIGYISDRETTTYNPSLNSRAVISRDTSKNQLSLQLRSVTTADTAIYFCATARRGQRIYGVVSFGEFFYYYYMDVWGKGTAVTVSSASTKGPSVFPLAPSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | YVSPLSVALGETARISCGRQALGSRAVQWYQHKPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTTATLTISGVEVGDEADYYCHMWDSRSGFSWSFGGATRLTVLSQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT | 22.386936 | 24.16932 | 226 | 210 | 226 | 210 | 226 | 210 | 99 | pgt124 fab heavy chain | pgt124 fab light chain | homo sapiens | homo sapiens | G | protein | envelope glycoprotein gp120 | human immunodeficiency virus 1 | 24 | 10 | 0.91 | HL | train |
8d4r_D_E | 8d4r | crystal structure of mosaic hiv-1 envelope (mosm3.2) in complex with antibodies pgt124 and 35o22 at 3.8 angstrom | no | viral protein/immune system | 2022-06-02 | 2023-12-13 | x-ray diffraction | 3.81 | 0.296 | 0.277 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGLV2 | D | E | EGQLVQSGAELKKPGASVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVIMTTDTEVPVTSFTSTGAAYMEIRNLKFDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSASTKGPSVFPLGCLVKDYFPEPVTVHTFPAVLQSSGLYSLSSCNVNHKPSNTKVDK | SVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQSKANPSVTLFPPSSEELQANKATLVCLISDFYPGAVTETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTSTVEKTV | EGQLVQSGAELKKPGASVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVIMTTDTEVPVTSFTSTGAAYMEIRNLKFDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSASTKGPSVFPLGCLVKDYFPEPVTVHTFPAVLQSSGLYSLSSCNVNHKPSNTKVDK | SVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQSKANPSVTLFPPSSEELQANKATLVCLISDFYPGAVTETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTSTVEKTV | 18.716621 | 22.96655 | 187 | 192 | 187 | 192 | 187 | 192 | 76 | 35o22 fab heavy chain | 35o22 fab light chain | homo sapiens | homo sapiens | G;B | protein;protein | envelope glycoprotein gp120;envelope glycoprotein gp41 | human immunodeficiency virus 1;human immunodeficiency virus 1 | 19;23 | 5;9 | 0.45;0.82 | HL | train |
8d54_A_B | 8d54 | anti hiv gp120/cd4 complex antibody cg10 fab | no | immune system | 2022-06-03 | 2022-12-14 | x-ray diffraction | 1.4 | 0.188 | 0.169 | 36448805 | 10.1128/jvi.01082-22 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV7 | A | B | QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 21.513578 | 23.552557 | 228 | 218 | 222 | 218 | 225 | 218 | 101 | cg10 fab heavy chain | cg10 fab light chain | mus musculus | mus musculus | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
8d53_E | 8d53 | crystal structure of mosaic hiv-1 envelope (mosm3.3) in complex with antibodies pgt124 and 35o22 at 3.25 angstrom | no | viral protein/immune system | 2022-06-03 | 2024-07-24 | x-ray diffraction | 3.24 | 0.331 | 0.317 | N.A. | N.A. | 0 | auth_asym_id | VL | N.A. | IGLV2 | N.A. | E | N.A. | VLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSV | N.A. | VLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSV | 0 | 13.168685 | 0 | 107 | 0 | 107 | 0 | 107 | 0 | N.A. | 35o22scfv light chain variable | N.A. | homo sapiens | D | protein | 35o22scfv heavy chain variable | homo sapiens | 31 | 8 | 0.5 | L_only | train |
8d53_H_L | 8d53 | crystal structure of mosaic hiv-1 envelope (mosm3.3) in complex with antibodies pgt124 and 35o22 at 3.25 angstrom | no | viral protein/immune system | 2022-06-03 | 2024-07-24 | x-ray diffraction | 3.24 | 0.331 | 0.317 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGLV3 | H | L | QVQLQESGPGLVRPSETLSVTCIVSGGSISNYYWTWIRQSPGKGLEWIGYISDRETTTYNPSLNSRAVISRDTSKNQLSLQLRSVTTADTAIYFCATARRGQRIYGVVSFGEFFYYYYMDVWGKGTAVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | SYVSPLSVALGETARISCGRQALGSRAVQWYQHKPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTTATLTISGVEVGDEADYYCHMWDSRSGFSWSFGGATRLTVLSQPKAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTEC | QVQLQESGPGLVRPSETLSVTCIVSGGSISNYYWTWIRQSPGKGLEWIGYISDRETTTYNPSLNSRAVISRDTSKNQLSLQLRSVTTADTAIYFCATARRGQRIYGVVSFGEFFYYYYMDVWGKGTAVTVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | SYVSPLSVALGETARISCGRQALGSRAVQWYQHKPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTTATLTISGVEVGDEADYYCHMWDSRSGFSWSFGGATRLTVLSQPKAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTEC | 22.605038 | 24.691477 | 229 | 212 | 229 | 212 | 229 | 212 | 99 | pgt124 fab heavy chain | pgt124 fab light chain | homo sapiens | homo sapiens | G | protein | envelope glycoprotein gp120 | human immunodeficiency virus 1 | 25 | 10 | 0.91 | HL | train |
7y0c_M_N | 7y0c | crystal structure of bd55-1403 and sars-cov-2 omicron rbd | yes | viral protein/immune system | 2022-06-04 | 2022-09-28 | x-ray diffraction | 2.94 | 0.278 | 0.202 | 36493787 | 10.1016/j.celrep.2022.111845 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | M | N | QVQLVQSGAEMKKPGSSVKVSCQASGGTFSTYVISWVRQAPGQGLEWMGGIIPIFNTPHYAQKFQGRVTITADESTSTAYMELSSLTSGDTAVYYCARVSQWELLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | EIVLTQSPGTLSLSPGERATLSCRASQSINSNYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGVSPRWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | QVQLVQSGAEMKKPGSSVKVSCQASGGTFSTYVISWVRQAPGQGLEWMGGIIPIFNTPHYAQKFQGRVTITADESTSTAYMELSSLTSGDTAVYYCARVSQWELLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | EIVLTQSPGTLSLSPGERATLSCRASQSINSNYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGVSPRWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | 23.102032 | 22.868803 | 218 | 214 | 218 | 214 | 218 | 214 | 98 | bd55-1403 fab heavy chain | bd55-1403 fab light chain | homo sapiens | homo sapiens | E | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 45 | 19 | 0.79 | HL | train |
7y0c_A_B | 7y0c | crystal structure of bd55-1403 and sars-cov-2 omicron rbd | yes | viral protein/immune system | 2022-06-04 | 2022-09-28 | x-ray diffraction | 2.94 | 0.278 | 0.202 | 36493787 | 10.1016/j.celrep.2022.111845 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | A | B | QVQLVQSGAEMKKPGSSVKVSCQASGGTFSTYVISWVRQAPGQGLEWMGGIIPIFNTPHYAQKFQGRVTITADESTSTAYMELSSLTSGDTAVYYCARVSQWELLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | EIVLTQSPGTLSLSPGERATLSCRASQSINSNYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGVSPRWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | QVQLVQSGAEMKKPGSSVKVSCQASGGTFSTYVISWVRQAPGQGLEWMGGIIPIFNTPHYAQKFQGRVTITADESTSTAYMELSSLTSGDTAVYYCARVSQWELLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | EIVLTQSPGTLSLSPGERATLSCRASQSINSNYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGVSPRWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | 22.466105 | 23.129965 | 218 | 214 | 218 | 214 | 218 | 214 | 104 | bd55-1403 fab heavy chain | bd55-1403 fab light chain | homo sapiens | homo sapiens | R | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 42 | 18 | 0.82 | HL | train |
8d5c_H_L | 8d5c | anti-hiv-1 gp120-scd4 complex antibody cg10 fab in complex with b41-scd4 | yes | viral protein/immune system | 2022-06-04 | 2022-11-16 | electron microscopy | 3.9 | N.A. | N.A. | 36448805 | 10.1128/jvi.01082-22 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV7 | H | L | QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSA | DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRT | 14.361154 | 14.108158 | 228 | 218 | 122 | 113 | 123 | 113 | 37 | cg10 fab heavy chain | cg10 fab light chain | mus musculus | mus musculus | A;D | protein;protein | envelope glycoprotein gp160;t-cell surface glycoprotein cd4 | human immunodeficiency virus;homo sapiens | 32;21 | 13;7 | 0.93;0.58 | HL | train |
8d5c_I_J | 8d5c | anti-hiv-1 gp120-scd4 complex antibody cg10 fab in complex with b41-scd4 | yes | viral protein/immune system | 2022-06-04 | 2022-11-16 | electron microscopy | 3.9 | N.A. | N.A. | 36448805 | 10.1128/jvi.01082-22 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV7 | I | J | QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSA | DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRT | 14.18199 | 14.025619 | 228 | 218 | 119 | 113 | 123 | 113 | 42 | cg10 fab heavy chain | cg10 fab light chain | mus musculus | mus musculus | B;E | protein;protein | envelope glycoprotein gp160;t-cell surface glycoprotein cd4 | human immunodeficiency virus;homo sapiens | 38;15 | 16;8 | 0.8;0.89 | HL | train |
8d5c_P_Q | 8d5c | anti-hiv-1 gp120-scd4 complex antibody cg10 fab in complex with b41-scd4 | yes | viral protein/immune system | 2022-06-04 | 2022-11-16 | electron microscopy | 3.9 | N.A. | N.A. | 36448805 | 10.1128/jvi.01082-22 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV7 | P | Q | QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLKQSGTELVRPGTSVKMSCKAAGYTFTDYWIGWVKQRPGHGLEWIGDFYPGGDYTLYSENFMGKASLTADTSSNTAYMQLSSLTSEDSAIYYCARGHYYGYSYAWFAYWGQGTLVTVSSA | DIVLTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVGEEDAATYYCQQSHEDPWTFGGGTMLEIKRT | 13.314185 | 13.860668 | 228 | 218 | 104 | 113 | 123 | 113 | 24 | cg10 fab heavy chain | cg10 fab light chain | mus musculus | mus musculus | C;F | protein;protein | envelope glycoprotein gp160;t-cell surface glycoprotein cd4 | human immunodeficiency virus;homo sapiens | 40;12 | 14;7 | 0.82;1.0 | HL | train |
7y0g_B_A | 7y0g | crystal structure of anti-mpeg h15-2b fab | no | immune system | 2022-06-05 | 2022-08-10 | x-ray diffraction | 2.08 | 0.245 | 0.211 | 35936993 | 10.1038/s42004-022-00709-0 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | B | A | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTGGSHHHHHH | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 20.921059 | 23.405315 | 229 | 214 | 211 | 213 | 216 | 213 | 91 | 15-2b heavy chain | 15-2b light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7y0g_E_D | 7y0g | crystal structure of anti-mpeg h15-2b fab | no | immune system | 2022-06-05 | 2022-08-10 | x-ray diffraction | 2.08 | 0.245 | 0.211 | 35936993 | 10.1038/s42004-022-00709-0 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | E | D | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTGGSHHHHHH | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 20.524523 | 23.224773 | 229 | 214 | 207 | 211 | 214 | 211 | 93 | 15-2b heavy chain | 15-2b light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7y0g_H_G | 7y0g | crystal structure of anti-mpeg h15-2b fab | no | immune system | 2022-06-05 | 2022-08-10 | x-ray diffraction | 2.08 | 0.245 | 0.211 | 35936993 | 10.1038/s42004-022-00709-0 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | G | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTGGSHHHHHH | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 20.883556 | 23.419983 | 229 | 214 | 211 | 213 | 216 | 213 | 89 | 15-2b heavy chain | 15-2b light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7y0g_K_J | 7y0g | crystal structure of anti-mpeg h15-2b fab | no | immune system | 2022-06-05 | 2022-08-10 | x-ray diffraction | 2.08 | 0.245 | 0.211 | 35936993 | 10.1038/s42004-022-00709-0 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | K | J | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTGGSHHHHHH | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 20.525822 | 23.165178 | 229 | 214 | 206 | 211 | 214 | 211 | 89 | 15-2b heavy chain | 15-2b light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7y0o_B | 7y0o | interface of sars-cov-2 wt spike in complex with r15 fab and p14 nanobody | no | viral protein/immune system | 2022-06-05 | 2023-09-06 | electron microscopy | 4.4 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | EEQLVESGGGLVQPGGSLRLSCAASGFRFGSYYMSWVRQAPGKAPEWVSDINTRGETTRYSDSVKGRFTIARDNANNTVFLFMNRLKPEDTAVYYCAVAASGDTFEGRSDPDYWGQGTLVTVS | N.A. | EEQLVESGGGLVQPGGSLRLSCAASGFRFGSYYMSWVRQAPGKAPEWVSDINTRGETTRYSDSVKGRFTIARDNANNTVFLFMNRLKPEDTAVYYCAVAASGDTFEGRSDPDYWGQGTLVTVS | N.A. | 14.147536 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | p14 nanobody | N.A. | vicugna pacos | N.A. | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 49 | 13 | 0.57 | H_only | train |
7y0o_H_L | 7y0o | interface of sars-cov-2 wt spike in complex with r15 fab and p14 nanobody | no | viral protein/immune system | 2022-06-05 | 2023-09-06 | electron microscopy | 4.4 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | H | L | QMQLVQSGAEVKKPGASVKVSCKASGYTFTSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADESTSTAYMELSSRSEDTAVYYCASGAFYYGSGSYPFDYWGQGT | GDIQLTQSPSSLSASVGDRVTITCRASQDISDYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISNLQPEDFATYYCQQSYSAPRTFGQGTKVEIK | QMQLVQSGAEVKKPGASVKVSCKASGYTFTSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADESTSTAYMELSSRSEDTAVYYCASGAFYYGSGSYPFDYWGQGT | GDIQLTQSPSSLSASVGDRVTITCRASQDISDYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISNLQPEDFATYYCQQSYSAPRTFGQGTKVEIK | 14.122262 | 13.485006 | 116 | 108 | 116 | 108 | 116 | 108 | 40 | heavy chain of r15 | light chain of r15 | homo sapiens | homo sapiens | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 39 | 20 | 0.91 | HL | train |
7y0n_E_J | 7y0n | sars-cov-2 wt spike in complex with r15 fab and p14 nanobody | yes | viral protein/immune system | 2022-06-05 | 2023-09-13 | electron microscopy | 3.8 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | E | J | QMQLVQSGAEVKKPGASVKVSCKASGYTFTSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADESTSTAYMELSSRSEDTAVYYCASGAFYYGSGSYPFDYWGQGT | GDIQLTQSPSSLSASVGDRVTITCRASQDISDYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISNLQPEDFATYYCQQSYSAPRTFGQGTKVEIK | QMQLVQSGAEVKKPGASVKVSCKASGYTFTSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADESTSTAYMELSSRSEDTAVYYCASGAFYYGSGSYPFDYWGQGT | GDIQLTQSPSSLSASVGDRVTITCRASQDISDYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISNLQPEDFATYYCQQSYSAPRTFGQGTKVEIK | 14.037362 | 13.18739 | 116 | 108 | 116 | 108 | 116 | 108 | 35 | heavy chain of r15-f7 | light chain of r15-f7 | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 61 | 21 | 0.66 | HL | train |
7y0n_G | 7y0n | sars-cov-2 wt spike in complex with r15 fab and p14 nanobody | yes | viral protein/immune system | 2022-06-05 | 2023-09-13 | electron microscopy | 3.8 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | G | N.A. | EEQLVESGGGLVQPGGSLRLSCAASGFRFGSYYMSWVRQAPGKAPEWVSDINTRGETTRYSDSVKGRFTIARDNANNTVFLFMNRLKPEDTAVYYCAVAASGDTFEGRSDPDYWGQGTLVTVS | N.A. | EEQLVESGGGLVQPGGSLRLSCAASGFRFGSYYMSWVRQAPGKAPEWVSDINTRGETTRYSDSVKGRFTIARDNANNTVFLFMNRLKPEDTAVYYCAVAASGDTFEGRSDPDYWGQGTLVTVS | N.A. | 14.252546 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | p14 nanobody | N.A. | vicugna pacos | N.A. | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 36 | 10 | 0.62 | H_only | train |
7y0n_C_L | 7y0n | sars-cov-2 wt spike in complex with r15 fab and p14 nanobody | yes | viral protein/immune system | 2022-06-05 | 2023-09-13 | electron microscopy | 3.8 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | C | L | QMQLVQSGAEVKKPGASVKVSCKASGYTFTSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADESTSTAYMELSSRSEDTAVYYCASGAFYYGSGSYPFDYWGQGT | GDIQLTQSPSSLSASVGDRVTITCRASQDISDYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISNLQPEDFATYYCQQSYSAPRTFGQGTKVEIK | QMQLVQSGAEVKKPGASVKVSCKASGYTFTSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADESTSTAYMELSSRSEDTAVYYCASGAFYYGSGSYPFDYWGQGT | GDIQLTQSPSSLSASVGDRVTITCRASQDISDYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISNLQPEDFATYYCQQSYSAPRTFGQGTKVEIK | 14.018406 | 13.187704 | 116 | 108 | 116 | 108 | 116 | 108 | 38 | heavy chain of r15-f7 | light chain of r15-f7 | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 58 | 21 | 0.72 | HL | train |
7y0n_H | 7y0n | sars-cov-2 wt spike in complex with r15 fab and p14 nanobody | yes | viral protein/immune system | 2022-06-05 | 2023-09-13 | electron microscopy | 3.8 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | H | N.A. | EEQLVESGGGLVQPGGSLRLSCAASGFRFGSYYMSWVRQAPGKAPEWVSDINTRGETTRYSDSVKGRFTIARDNANNTVFLFMNRLKPEDTAVYYCAVAASGDTFEGRSDPDYWGQGTLVTVS | N.A. | EEQLVESGGGLVQPGGSLRLSCAASGFRFGSYYMSWVRQAPGKAPEWVSDINTRGETTRYSDSVKGRFTIARDNANNTVFLFMNRLKPEDTAVYYCAVAASGDTFEGRSDPDYWGQGTLVTVS | N.A. | 14.2472 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | p14 nanobody | N.A. | vicugna pacos | N.A. | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 35 | 10 | 0.67 | H_only | train |
7y0n_F_K | 7y0n | sars-cov-2 wt spike in complex with r15 fab and p14 nanobody | yes | viral protein/immune system | 2022-06-05 | 2023-09-13 | electron microscopy | 3.8 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | F | K | QMQLVQSGAEVKKPGASVKVSCKASGYTFTSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADESTSTAYMELSSRSEDTAVYYCASGAFYYGSGSYPFDYWGQGT | GDIQLTQSPSSLSASVGDRVTITCRASQDISDYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISNLQPEDFATYYCQQSYSAPRTFGQGTKVEIK | QMQLVQSGAEVKKPGASVKVSCKASGYTFTSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADESTSTAYMELSSRSEDTAVYYCASGAFYYGSGSYPFDYWGQGT | GDIQLTQSPSSLSASVGDRVTITCRASQDISDYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISNLQPEDFATYYCQQSYSAPRTFGQGTKVEIK | 14.014545 | 13.195956 | 116 | 108 | 116 | 108 | 116 | 108 | 38 | heavy chain of r15-f7 | light chain of r15-f7 | homo sapiens | homo sapiens | D | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 58 | 21 | 0.72 | HL | train |
7y0n_I | 7y0n | sars-cov-2 wt spike in complex with r15 fab and p14 nanobody | yes | viral protein/immune system | 2022-06-05 | 2023-09-13 | electron microscopy | 3.8 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | I | N.A. | EEQLVESGGGLVQPGGSLRLSCAASGFRFGSYYMSWVRQAPGKAPEWVSDINTRGETTRYSDSVKGRFTIARDNANNTVFLFMNRLKPEDTAVYYCAVAASGDTFEGRSDPDYWGQGTLVTVS | N.A. | EEQLVESGGGLVQPGGSLRLSCAASGFRFGSYYMSWVRQAPGKAPEWVSDINTRGETTRYSDSVKGRFTIARDNANNTVFLFMNRLKPEDTAVYYCAVAASGDTFEGRSDPDYWGQGTLVTVS | N.A. | 14.253764 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | p14 nanobody | N.A. | vicugna pacos | N.A. | D | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 37 | 10 | 0.59 | H_only | train |
7y0v_H_L | 7y0v | the co-crystal structure of ba.1-rbd with fab-5549 | yes | viral protein/immune system | 2022-06-06 | 2022-09-28 | x-ray diffraction | 2.48 | 0.268 | 0.211 | 36493787 | 10.1016/j.celrep.2022.111845 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGLV3 | H | L | QLQLQESGPGLVKPSETLSLTCTVSGASITSSDSYWGWIRQPPGKGLEWIGSIYYTGSAYKSPPLKSRVTMSVDTSKNQFSLKVTSLTAADTAVYYCARGRGSPPHYYFYFGLDVWGQGTTVSVSLASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH | SYELTQPPSVSVSPGQTATITCSGTALPNHYAYWYQQKPGQAPVLVIYTDNERPSGIPERFSGSTSGTTVTLTISGVQAEDEADYYCQSADSNANVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | QLQLQESGPGLVKPSETLSLTCTVSGASITSSDSYWGWIRQPPGKGLEWIGSIYYTGSAYKSPPLKSRVTMSVDTSKNQFSLKVTSLTAADTAVYYCARGRGSPPHYYFYFGLDVWGQGTTVSVSLASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKK | YELTQPPSVSVSPGQTATITCSGTALPNHYAYWYQQKPGQAPVLVIYTDNERPSGIPERFSGSTSGTTVTLTISGVQAEDEADYYCQSADSNANVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE | 21.645756 | 23.85761 | 233 | 213 | 223 | 210 | 223 | 210 | 84 | 5549-fab | 5549-fab | homo sapiens | homo sapiens | R | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 44 | 22 | 0.88 | HL | train |
7y0w_A_B | 7y0w | local structure of bd55-5514 and bd55-5840 fab and omicron ba.1 rbd complex | yes | viral protein | 2022-06-06 | 2022-09-28 | electron microscopy | 3.42 | N.A. | N.A. | 36493787 | 10.1016/j.celrep.2022.111845 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | A | B | QVQLVQSGAEVKKPGSSVKVSCKASGGTFRSHVISWVRQAPGQGLEWMGGFIPLFGTTIYAQAFQGRVMISADESTSTAYMELSSLRSEDTAVYFCARLFPNGDPNSPEDGFDIWGQGTLVTV | DIQMTQSPSSLSASVGDRVTITCQASQDIGNYLNWYQQKPGKAPKLLIYDASHLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQRYDDLPSYTFGQGTKVEI | QVQLVQSGAEVKKPGSSVKVSCKASGGTFRSHVISWVRQAPGQGLEWMGGFIPLFGTTIYAQAFQGRVMISADESTSTAYMELSSLRSEDTAVYFCARLFPNGDPNSPEDGFDIWGQGTLVTV | DIQMTQSPSSLSASVGDRVTITCQASQDIGNYLNWYQQKPGKAPKLLIYDASHLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQRYDDLPSYTFGQGTKVEI | 14.174 | 13.155492 | 123 | 107 | 123 | 107 | 123 | 107 | 43 | bd55-5514h | bd55-5514l | homo sapiens | homo sapiens | R | protein | spike protein s1 | homo sapiens | 49 | 20 | 0.8 | HL | train |
7y0w_H_L | 7y0w | local structure of bd55-5514 and bd55-5840 fab and omicron ba.1 rbd complex | yes | viral protein | 2022-06-06 | 2022-09-28 | electron microscopy | 3.42 | N.A. | N.A. | 36493787 | 10.1016/j.celrep.2022.111845 | 0 | auth_asym_id | VH:VL | IGHV7 | IGKV3 | H | L | VQLAQSGSELRKPGASVKVSCDTSGHSFTSNAIHWVRQAPGQGLEWMGWINTDTGTPTYAQGFTGRFVFSLDTSARTAYLQISSLKADDTAVFYCARERDYSDYFFDYWGQGTLVTVSS | EVVMTQSPASLSVSPGERATLSCRARASLGISTDLAWYQQRPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDSAVYYCQQYSNWPLTFGGGTKVEIK | VQLAQSGSELRKPGASVKVSCDTSGHSFTSNAIHWVRQAPGQGLEWMGWINTDTGTPTYAQGFTGRFVFSLDTSARTAYLQISSLKADDTAVFYCARERDYSDYFFDYWGQGTLVTVSS | EVVMTQSPASLSVSPGERATLSCRARASLGISTDLAWYQQRPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDSAVYYCQQYSNWPLTFGGGTKVEIK | 13.755217 | 13.253717 | 119 | 109 | 119 | 109 | 119 | 109 | 43 | bd55-5840h | bd55-5840l | homo sapiens | homo sapiens | R | protein | spike protein s1 | homo sapiens | 44 | 20 | 0.83 | HL | train |
8d8r_H_L | 8d8r | sars-cov-2 spike rbd in complex with dmab 2196 | no | viral protein/immune system | 2022-06-08 | 2022-10-19 | electron microscopy | 4.1 | N.A. | N.A. | 36202799 | 10.1038/s41467-022-33309-6 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV3 | H | L | QMQLVQSGPEVKKPGTSVKVSCKASGFTFMSSAVQWVRQARGQRLEWIGWIVIGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRSEDTAVYYCAAPYCSSISCNDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQHYGSSRGWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QMQLVQSGPEVKKPGTSVKVSCKASGFTFMSSAVQWVRQARGQRLEWIGWIVIGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRSEDTAVYYCAAPYCSSISCNDGFDIWGQGTMVTVS | EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQHYGSSRGWTFGQGTKVEIK | 14.19317 | 13.474884 | 226 | 216 | 122 | 109 | 122 | 109 | 40 | 2196 heavy chain | 2196 light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 39 | 19 | 0.83 | HL | train |
7y1f_E | 7y1f | cryo-em structure of human k-opioid receptor-gi complex | no | structural protein | 2022-06-08 | 2023-05-24 | electron microscopy | 3.3 | N.A. | N.A. | 37285260 | 10.1093/procel/pwac033 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | GSMLLVNQSHQGFNKEHTSKMVSAIVLYVLLAAAAHSAFADVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAAHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.258108 | 0 | 299 | 0 | 232 | 0 | 246 | 0 | 0 | scfv16 | N.A. | homo sapiens | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 28;21 | 17;8 | 0.89;0.8 | H_only | train |
7y1b_H_L | 7y1b | 3.2 angstrom cryo-em structure of extracellular region of mouse basigin-2 in complex with the fab fragment of antibody 6e7f1 | no | transport protein | 2022-06-08 | 2023-06-14 | electron microscopy | 3.23 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV6 | H | L | MGWSYIILFLVTTATGVHSQVQLQQPGAELVKPGASVNLSCKASGYTFTNYWIHWVKQRPGQGLEWIGMIHPNSGTINYNEKFKTKATLTVDKSSSTAYMQLSSLTSEDSAVYYCARVGTGSLDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR | MVSTSQLLGLLLFWTSASRCDIVMTQSPATLSVTPGDRVSLSCRASQSISDYLHWYQQKSHESPRLLIKYVSQSISGIPSRFSGSGSGSYFTLSIDSVEPEDVGVYYCQNGHRFPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | QVQLQQPGAELVKPGASVNLSCKASGYTFTNYWIHWVKQRPGQGLEWIGMIHPNSGTINYNEKFKTKATLTVDKSSSTAYMQLSSLTSEDSAVYYCARVGTGSLDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR | DIVMTQSPATLSVTPGDRVSLSCRASQSISDYLHWYQQKSHESPRLLIKYVSQSISGIPSRFSGSGSGSYFTLSIDSVEPEDVGVYYCQNGHRFPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 21.438633 | 23.74067 | 236 | 234 | 214 | 213 | 217 | 213 | 89 | heavy chain of 6e7f1 | light chain of 6e7f1 | mus musculus | mus musculus | A | protein | isoform 2 of basigin | mus musculus | 51 | 18 | 0.75 | HL | train |
7y24_S | 7y24 | cryo-em structure of the octreotide-bound sstr2-minigo-scfv16 complex | yes | structural protein | 2022-06-09 | 2022-10-19 | electron microscopy | 3.25 | N.A. | N.A. | 36138141 | 10.1038/s41589-022-01130-3 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.43922 | 0 | 246 | 0 | 231 | 0 | 246 | 0 | 0 | single fab chain (svfv16) | N.A. | homo sapiens | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(o) subunit alpha;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 29;20 | 17;9 | 0.89;0.9 | H_only | train |
7y26_D | 7y26 | cryo-em structure of the octreotide-bound sstr2-minigq-scfv16 complex | yes | structural protein | 2022-06-09 | 2022-10-19 | electron microscopy | 3.3 | N.A. | N.A. | 36138141 | 10.1038/s41589-022-01130-3 | 0 | auth_asym_id | scFv | N.A. | N.A. | D | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGSGGGGSGGGGSSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPERFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAAHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGSGGGGSGGGGSSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPERFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLE | N.A. | 17.816828 | 0 | 258 | 0 | 222 | 0 | 245 | 0 | 0 | single fab chain (svfv16) | N.A. | homo sapiens | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;engineered guanine nucleotide-binding protein g(q) subunit alpha | homo sapiens;homo sapiens | 17;27 | 8;15 | 0.89;0.94 | H_only | train |
7y3g_N | 7y3g | cryo-em structure of a class a orphan gpcr | yes | membrane protein | 2022-06-10 | 2023-06-07 | electron microscopy | 2.77 | N.A. | N.A. | 36593162 | 10.1016/j.scib.2022.12.023 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | MKYLLPTAAAGLLLLAAQPAMAMQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTV | N.A. | 13.950075 | 0 | 157 | 0 | 126 | 0 | 126 | 0 | 0 | nanobody 35 | N.A. | lama glama | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 41;32 | 15;11 | 0.68;0.69 | H_only | train |
8a44_C_D | 8a44 | plasmodium vivax duffy binding protein region ii bound the darc ectodomain and monoclonal antibody db1 | yes | cell adhesion | 2022-06-10 | 2023-06-07 | x-ray diffraction | 2.49 | 0.225 | 0.196 | 37336887 | 10.1038/s41467-023-39357-w | 0 | auth_asym_id | FabH:FabL | IGHV5 | IGKV1 | C | D | EVQLVQSGAEVKKPGESLKISCKGSGYSFTDYWIGWVRQMPGKGLEWMGIIYAGDSDTRYSPSFQGQVTISADKSISTASLQWSSLKASDTAMYYCARLAYDSSGYYYAFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | IVMTQSPSSLSASVGDRVTITCRASQTISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | EVQLVQSGAEVKKPGESLKISCKGSGYSFTDYWIGWVRQMPGKGLEWMGIIYAGDSDTRYSPSFQGQVTISADKSISTASLQWSSLKASDTAMYYCARLAYDSSGYYYAFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | IVMTQSPSSLSASVGDRVTITCRASQTISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPLITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 23.272562 | 23.467407 | 225 | 213 | 225 | 213 | 225 | 213 | 104 | heavy chain of monoclonal antibody db1 | light chain of monoclonal antibody db1 | homo sapiens | homo sapiens | A | protein | duffy binding protein | plasmodium vivax | 49 | 21 | 0.78 | HL | train |
7y36_N | 7y36 | cryo-em structure of the teriparatide-bound human pth1r-gs complex | yes | membrane protein | 2022-06-10 | 2023-07-05 | electron microscopy | 2.8 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTV | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTV | N.A. | 13.722148 | 0 | 126 | 0 | 126 | 0 | 126 | 0 | 0 | nanobody 35 | N.A. | synthetic construct | N.A. | A;B | protein;protein | isoform gnas-2 of guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;rattus norvegicus | 47;30 | 13;11 | 0.57;0.69 | H_only | train |
7y3j_H_L | 7y3j | 24b3 antibody-peptide complex | no | immune system | 2022-06-11 | 2022-08-17 | x-ray diffraction | 2.6 | 0.261 | 0.222 | 35839743 | 10.1016/j.bbrc.2022.07.010 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV2 | H | L | EVQLQQSGPELVKPGASVKIFCKASGYTFTDYNMDWVKQSHGKRLEWIGDINPNTGVTIDNPKFKGKATLTVDESSSTVYMELRSLSSEDTAVYYCARLPDNYVMDYWGQGTSVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQTVTCNVAHPASSTKVDKKIVPRD | DVVMTQTPLSLPVSLGDQASISCRCSQSLVHRNGNTNLHWYLQKSGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTYVPLTFGVGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN | EVQLQQSGPELVKPGASVKIFCKASGYTFTDYNMDWVKQSHGKRLEWIGDINPNTGVTIDNPKFKGKATLTVDESSSTVYMELRSLSSEDTAVYYCARLPDNYVMDYWGQGTSVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQTVTCNVAHPASSTKVDKKIVPRD | DVVMTQTPLSLPVSLGDQASISCRCSQSLVHRNGNTNLHWYLQKSGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTYVPLTFGVGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN | 22.98199 | 22.846125 | 219 | 217 | 219 | 217 | 219 | 217 | 104 | 24b3 heavy chain | 24b3 light chain | mus musculus | mus musculus | A | peptide | ala-leu-val-phe-phe-ala-pro-ala-val-gly-ser | homo sapiens | 33 | 16 | 0.7 | HL | train |
7y3o_H_L | 7y3o | crystal structure of sars-cov-2 receptor binding domain in complex with human antibody biols56 | no | viral protein/immune system | 2022-06-11 | 2023-12-27 | x-ray diffraction | 2.1 | 0.229 | 0.183 | 38109549 | 10.1073/pnas.2314193120 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGVVQPGGSLRLSCAVSGFTFDDYAMHWVRQAPGKGLDWVSLISGDGSYTYYADSVKGRFTISRDSSKNSLYLQMNSLRTEDTALYYCAKAQTPTLWWLQDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS | DIQMTQSPSSLSASVGDRVTITCRASQSISNYLNWYQQKPGKAPKLLIYVASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGVVQPGGSLRLSCAVSGFTFDDYAMHWVRQAPGKGLDWVSLISGDGSYTYYADSVKGRFTISRDSSKNSLYLQMNSLRTEDTALYYCAKAQTPTLWWLQDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS | DIQMTQSPSSLSASVGDRVTITCRASQSISNYLNWYQQKPGKAPKLLIYVASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTPFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.241568 | 22.404417 | 226 | 214 | 226 | 214 | 226 | 214 | 101 | heavy chain of biols56 | light chain of biols56 | homo sapiens | homo sapiens | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 43 | 19 | 0.83 | HL | train |
8d9z_B_A | 8d9z | crystal structure of cobra alpha-neurotoxin in complex with centi-lnx-d09 antibody | no | immune system,antitoxin/toxin | 2022-06-12 | 2023-06-14 | x-ray diffraction | 1.8 | 0.198 | 0.165 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | B | A | EVQLVESGGGFVQPGGSLRLSCAASGFTFSNFDMHWVRQSPGKGLEWVSGLDHSGGAHYAGSVKGRFTISREDAKNSLDLQMNNLRVDDTAVYFCVRGTLYHYTSGSYYSDAFDIWGQGTLVTVSSASVKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGLE | EIVLTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYAASSLESGVPSRFSGSGSGTDFTLTISSQQPEDFATYYCQQANSFPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGFVQPGGSLRLSCAASGFTFSNFDMHWVRQSPGKGLEWVSGLDHSGGAHYAGSVKGRFTISREDAKNSLDLQMNNLRVDDTAVYFCVRGTLYHYTSGSYYSDAFDIWGQGTLVTVSSASVKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | EIVLTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYAASSLESGVPSRFSGSGSGTDFTLTISSQQPEDFATYYCQQANSFPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.508966 | 23.016851 | 237 | 214 | 227 | 213 | 227 | 213 | 92 | centi-lnx-d09 fab heavy chain | centi-lnx-d09 fab light chain | homo sapiens | homo sapiens | D | protein | long neurotoxin 1 | naja nivea | 38 | 19 | 0.86 | HL | train |
8da0_B_A | 8da0 | crystal structure of mamba alpha-neurotoxin in complex with centi-lnx-d09 antibody | no | immune system,antitoxin/toxin | 2022-06-12 | 2023-06-14 | x-ray diffraction | 2.2 | 0.248 | 0.196 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | B | A | EVQLVESGGGFVQPGGSLRLSCAASGFTFSNFDMHWVRQSPGKGLEWVSGLDHSGGAHYAGSVKGRFTISREDAKNSLDLQMNNLRVDDTAVYFCVRGTLYHYTSGSYYSDAFDIWGQGTLVTVSSASVKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGLE | EIVLTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYAASSLESGVPSRFSGSGSGTDFTLTISSQQPEDFATYYCQQANSFPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGFVQPGGSLRLSCAASGFTFSNFDMHWVRQSPGKGLEWVSGLDHSGGAHYAGSVKGRFTISREDAKNSLDLQMNNLRVDDTAVYFCVRGTLYHYTSGSYYSDAFDIWGQGTLVTVSSASVKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT | EIVLTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYAASSLESGVPSRFSGSGSGTDFTLTISSQQPEDFATYYCQQANSFPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 24.428972 | 22.45644 | 237 | 214 | 234 | 214 | 234 | 214 | 119 | centi-lnx-d09 fab heavy chain | centi-lnx-d09 fab light chain | homo sapiens | homo sapiens | E | protein | alpha-elapitoxin-dpp2d | dendroaspis polylepis polylepis | 39 | 19 | 0.79 | HL | train |
8da0_D_C | 8da0 | crystal structure of mamba alpha-neurotoxin in complex with centi-lnx-d09 antibody | no | immune system,antitoxin/toxin | 2022-06-12 | 2023-06-14 | x-ray diffraction | 2.2 | 0.248 | 0.196 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | D | C | EVQLVESGGGFVQPGGSLRLSCAASGFTFSNFDMHWVRQSPGKGLEWVSGLDHSGGAHYAGSVKGRFTISREDAKNSLDLQMNNLRVDDTAVYFCVRGTLYHYTSGSYYSDAFDIWGQGTLVTVSSASVKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGLE | EIVLTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYAASSLESGVPSRFSGSGSGTDFTLTISSQQPEDFATYYCQQANSFPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGFVQPGGSLRLSCAASGFTFSNFDMHWVRQSPGKGLEWVSGLDHSGGAHYAGSVKGRFTISREDAKNSLDLQMNNLRVDDTAVYFCVRGTLYHYTSGSYYSDAFDIWGQGTLVTVSSASVKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT | EIVLTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYAASSLESGVPSRFSGSGSGTDFTLTISSQQPEDFATYYCQQANSFPYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 24.414953 | 22.434887 | 237 | 214 | 234 | 214 | 234 | 214 | 117 | centi-lnx-d09 fab heavy chain | centi-lnx-d09 fab light chain | homo sapiens | homo sapiens | F | peptide | alpha-elapitoxin-dpp2d | dendroaspis polylepis polylepis | 24 | 13 | 0.93 | HL | train |
8dao_C_D | 8dao | crystal structure of sars-cov-2 spike stem fusion peptide in complex with neutralizing antibody cov44-79 | no | immune system | 2022-06-13 | 2022-07-27 | x-ray diffraction | 2.8 | 0.284 | 0.231 | 35857439 | 10.1126/science.abq3773 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | C | D | QVQLVESGGGVVQPGRSLRLSCAASGLTFSGYAMHWVRQAPGKGLEWVAVISRDARNKYYADSVKGRFTISRDNSKKTVYLEMNSLRVEDTAVYYCAILIIPGITEPGSPDALDIWGQGTMVSVSS | DIQMTQSPSSMSASVGDRVTITCRASQDISKWLAWYQQRPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQASSFPWSITFGQGTRLEIR | QVQLVESGGGVVQPGRSLRLSCAASGLTFSGYAMHWVRQAPGKGLEWVAVISRDARNKYYADSVKGRFTISRDNSKKTVYLEMNSLRVEDTAVYYCAILIIPGITEPGSPDALDIWGQGTMVSVSS | DIQMTQSPSSMSASVGDRVTITCRASQDISKWLAWYQQRPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQASSFPWSITFGQGTRLEIR | 14.623608 | 13.408505 | 126 | 109 | 126 | 109 | 126 | 109 | 53 | cov44-79 heavy chain variable domain | cov44-79 light chain variable domain | homo sapiens | homo sapiens | I | peptide | spike protein s2 fusion peptide | severe acute respiratory syndrome coronavirus 2 | 35 | 23 | 0.96 | HL | train |
8dao_A_B | 8dao | crystal structure of sars-cov-2 spike stem fusion peptide in complex with neutralizing antibody cov44-79 | no | immune system | 2022-06-13 | 2022-07-27 | x-ray diffraction | 2.8 | 0.284 | 0.231 | 35857439 | 10.1126/science.abq3773 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | A | B | QVQLVESGGGVVQPGRSLRLSCAASGLTFSGYAMHWVRQAPGKGLEWVAVISRDARNKYYADSVKGRFTISRDNSKKTVYLEMNSLRVEDTAVYYCAILIIPGITEPGSPDALDIWGQGTMVSVSS | DIQMTQSPSSMSASVGDRVTITCRASQDISKWLAWYQQRPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQASSFPWSITFGQGTRLEIR | QVQLVESGGGVVQPGRSLRLSCAASGLTFSGYAMHWVRQAPGKGLEWVAVISRDARNKYYADSVKGRFTISRDNSKKTVYLEMNSLRVEDTAVYYCAILIIPGITEPGSPDALDIWGQGTMVSVSS | DIQMTQSPSSMSASVGDRVTITCRASQDISKWLAWYQQRPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQASSFPWSITFGQGTRLEIR | 14.635154 | 13.415292 | 126 | 109 | 126 | 109 | 126 | 109 | 57 | cov44-79 heavy chain variable domain | cov44-79 light chain variable domain | homo sapiens | homo sapiens | J | peptide | spike protein s2 fusion peptide | severe acute respiratory syndrome coronavirus 2 | 31 | 21 | 0.95 | HL | train |
8dad_H_L | 8dad | sars-cov-2 receptor binding domain in complex with az090 fab | yes | viral protein/immune system | 2022-06-13 | 2022-08-24 | electron microscopy | 3.85 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV3 | H | L | QVQLVQSGPEVKKPGTSVKVSCKASQFTFSISAVQWVRQARGQRLEWMGWIVVGSGNTDYAQRFQERVTISRDMSAGTVYMELRSLRSEDTAVYYCAAPYCNKTNCRDGFDMWGQGTMVTVSS | IVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASRRATGIPDRFSGSASGTDFILTISRLEPEDFAVYYCQQYRNSPWTFGQGTKVEIK | QVQLVQSGPEVKKPGTSVKVSCKASQFTFSISAVQWVRQARGQRLEWMGWIVVGSGNTDYAQRFQERVTISRDMSAGTVYMELRSLRSEDTAVYYCAAPYCNKTNCRDGFDMWGQGTMVTVSS | IVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASRRATGIPDRFSGSASGTDFILTISRLEPEDFAVYYCQQYRNSPWTFGQGTKVEIK | 14.186516 | 13.238228 | 123 | 107 | 123 | 107 | 123 | 107 | 39 | az090 fab heavy chain | az090 fab light chain | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 49 | 22 | 0.88 | HL | train |
8dam_B | 8dam | nbf3:nbe8:cav beta subunit 1b complex | no | transport protein/immune system | 2022-06-13 | 2022-12-21 | x-ray diffraction | 2 | 0.227 | 0.193 | 36494348 | 10.1038/s41467-022-35025-7 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | GQVQLQESGGGLVQAGGSLRLSCVASGRTFSSYAMGWFRQAPGKEREFVAAIDWSGGTASHADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAASSYWSRSVDEYDYWGQGTQVTVSS | N.A. | QVQLQESGGGLVQAGGSLRLSCVASGRTFSSYAMGWFRQAPGKEREFVAAIDWSGGTASHADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAASSYWSRSVDEYDYWGQGTQVTVSS | N.A. | 13.570343 | 0 | 123 | 0 | 120 | 0 | 122 | 0 | 0 | nanobody f3 | N.A. | lama glama | N.A. | A | protein | voltage-dependent l-type calcium channel subunit beta-1 | mus musculus | 50 | 14 | 0.64 | H_only | train |
8dam_C | 8dam | nbf3:nbe8:cav beta subunit 1b complex | no | transport protein/immune system | 2022-06-13 | 2022-12-21 | x-ray diffraction | 2 | 0.227 | 0.193 | 36494348 | 10.1038/s41467-022-35025-7 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | GQVQLQESGGGSVQAGGSLRLSCAASGRTFSKNAMGWFRQAPGKEREFVVAISWSGRNTYYADSVKGRFTISRDNAKNTVDLQMNSLKPEDSAVYYCAVGGDWRVYDISFYYTAHQYEYWGQGTQVTVSS | N.A. | GQVQLQESGGGSVQAGGSLRLSCAASGRTFSKNAMGWFRQAPGKEREFVVAISWSGRNTYYADSVKGRFTISRDNAKNTVDLQMNSLKPEDSAVYYCAVGGDWRVYDISFYYTAHQYEYWGQGTQVTV | N.A. | 13.870285 | 0 | 130 | 0 | 128 | 0 | 128 | 0 | 0 | nanobody e8 | N.A. | lama glama | N.A. | A | protein | voltage-dependent l-type calcium channel subunit beta-1 | mus musculus | 44 | 16 | 0.89 | H_only | train |
8dbz_B_C | 8dbz | cryoem structure of hantavirus andv gn(h) protein complex with 2fabs andv-5 and andv-34 | no | viral protein/immune system | 2022-06-15 | 2023-04-05 | electron microscopy | 4.1 | N.A. | N.A. | 36971354 | 10.7554/eLife.81743 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV2 | B | C | QVQLLQSGAEVKKPGSSVRVSCQSSGDIYNYYGISWVRQAPGQGLEWMGGIIPVYGRPNYVQKFRGRVTFTVDKSTSTAYMELSTLRADDTAVYYCARDTARSHYFGSGNDYGMDVWGQGTTVIVSS | DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGFNFVDWYLQKPGQSPQLLIYLGSTRASGVPDRFSGSGSGTDFTLEISRVEAEDVGVYYCMQALQFPRTFGQGTKLDIK | QVQLLQSGAEVKKPGSSVRVSCQSSGDIYNYYGISWVRQAPGQGLEWMGGIIPVYGRPNYVQKFRGRVTFTVDKSTSTAYMELSTLRADDTAVYYCARDTARSHYFGSGNDYGMDVWGQGTTVIVSS | DIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGFNFVDWYLQKPGQSPQLLIYLGSTRASGVPDRFSGSGSGTDFTLEISRVEAEDVGVYYCMQALQFPRTFGQGTKLDIK | 14.250969 | 13.694123 | 127 | 112 | 127 | 112 | 127 | 112 | 48 | fv (h) andv-5 | fv (l) andv-5 | homo sapiens | homo sapiens | A;G | protein;protein | glycoprotein n;fab fc (l) kappac | andes orthohantavirus;homo sapiens | 38;17 | 14;5 | 0.82;0.62 | HL | train |
8dbz_D_E | 8dbz | cryoem structure of hantavirus andv gn(h) protein complex with 2fabs andv-5 and andv-34 | no | viral protein/immune system | 2022-06-15 | 2023-04-05 | electron microscopy | 4.1 | N.A. | N.A. | 36971354 | 10.7554/eLife.81743 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV3 | D | E | QVHLVQSGGELRKPGSSVKVSCKASGGTFSSFAITWLRQAPGQGLEWVGAYIPVFGSAIHGQKVHGRVTLTADESTTTAYMELSSLRSEDTAVYFCARGPTQNWEYSYYTYFESWGQGTLVTVSS | QIVLTQSPGTLSLSPGERATLSCRASQSVTSRYLAWYQQKPGQAPRLLIYDTSSRATGIPDRFSGSGSETDFTLTISRLAPEDFAVYYCQQYGTSPAVTFGQGTRLEIK | QVHLVQSGGELRKPGSSVKVSCKASGGTFSSFAITWLRQAPGQGLEWVGAYIPVFGSAIHGQKVHGRVTLTADESTTTAYMELSSLRSEDTAVYFCARGPTQNWEYSYYTYFESWGQGTLVTVSS | QIVLTQSPGTLSLSPGERATLSCRASQSVTSRYLAWYQQKPGQAPRLLIYDTSSRATGIPDRFSGSGSETDFTLTISRLAPEDFAVYYCQQYGTSPAVTFGQGTRLEIK | 13.863628 | 13.34049 | 125 | 109 | 125 | 109 | 125 | 109 | 39 | fv (h) andv-34 | fv (l) andv-34 | homo sapiens | homo sapiens | A;I | protein;protein | glycoprotein n;fab fc (l) kappac | andes orthohantavirus;homo sapiens | 54;19 | 19;5 | 0.73;0.56 | HL | train |
8dce_H | 8dce | sars-cov-2 receptor-binding domain speedesign immunogen 1 bound to c144 scfv | yes | viral protein/immune system | 2022-06-16 | 2022-06-29 | x-ray diffraction | 2 | 0.203 | 0.177 | 36103542 | 10.1126/sciadv.abq8276 | 0 | auth_asym_id | scFv | N.A. | N.A. | H | N.A. | ETEVQLVESGGGLIQPGGSLRLSCAASGFTVSNNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDKSKNTLYLQMNRLRAEDTAVYYCAREGEVEGYNDFWSGYSRDRYYFDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSGGGGSQSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTRVFGTGTKVTVLGTHHHHHH | N.A. | EVQLVESGGGLIQPGGSLRLSCAASGFTVSNNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDKSKNTLYLQMNRLRAEDTAVYYCAREGEVEGYNDFWSGYSRDRYYFDYWGQGTLVTVSSGGGGSGGGGSGGGGSGGGGSGGGGSQSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTRVFGTGTKVTVLGT | N.A. | 17.490686 | 0 | 276 | 0 | 242 | 0 | 268 | 0 | 0 | c144 scfv | N.A. | homo sapiens | N.A. | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 44 | 20 | 0.83 | H_only | train |
8a67_D | 8a67 | branched lys48- and lys63-linked tri-ubiquitin (k48-k63-ub3) in complex with matured synthetic nanobody nbsl3.3q (3rd generation) | yes | signaling protein | 2022-06-16 | 2023-02-15 | x-ray diffraction | 1.86 | 0.245 | 0.186 | 38977901 | 10.1038/s41594-024-01354-y | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGSIFDLGVMGWYRQAPGKEREQVAGIDYGGVTNYADSVKGRFTISRDNDTVYLQMNSLKPEDTAVYYCAAGIVGDEVGWIYYLYWGQGTQVTVSSHHHHHH | N.A. | VQLQESGGGLVQAGGSLRLSCAASGSIFDLGVMGWYRQAPGKEREQVAGIDYGGVTNYADSVKGRFTISRDNDTVYLQMNSLKPEDTAVYYCAAGIVGDEVGWIYYLYWGQGTQVTVSSHHHHHH | N.A. | 15.357194 | 0 | 148 | 0 | 125 | 0 | 125 | 0 | 0 | synthetic nanobody nbsl3.3q | N.A. | synthetic construct | N.A. | A;B;C | protein;protein;protein | polyubiquitin-b;polyubiquitin-b;polyubiquitin-b | homo sapiens;homo sapiens;homo sapiens | 28;28;40 | 13;15;10 | 0.87;0.94;0.59 | H_only | train |
8a67_H | 8a67 | branched lys48- and lys63-linked tri-ubiquitin (k48-k63-ub3) in complex with matured synthetic nanobody nbsl3.3q (3rd generation) | yes | signaling protein | 2022-06-16 | 2023-02-15 | x-ray diffraction | 1.86 | 0.245 | 0.186 | 38977901 | 10.1038/s41594-024-01354-y | 0 | auth_asym_id | VHH | IGHV3 | N.A. | H | N.A. | MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGSIFDLGVMGWYRQAPGKEREQVAGIDYGGVTNYADSVKGRFTISRDNDTVYLQMNSLKPEDTAVYYCAAGIVGDEVGWIYYLYWGQGTQVTVSSHHHHHH | N.A. | VQLQESGGGLVQAGGSLRLSCAASGSIFDLGVMGWYRQAPGKEREQVAGIDYGGVTNYADSVKGRFTISRDNDTVYLQMNSLKPEDTAVYYCAAGIVGDEVGWIYYLYWGQGTQVTVSSHHHHHH | N.A. | 15.329328 | 0 | 148 | 0 | 125 | 0 | 125 | 0 | 0 | synthetic nanobody nbsl3.3q | N.A. | synthetic construct | N.A. | E;F;G | protein;protein;protein | polyubiquitin-b;polyubiquitin-b;polyubiquitin-b | homo sapiens;homo sapiens;homo sapiens | 27;31;39 | 14;16;10 | 0.93;0.84;0.59 | H_only | train |
8dcn_A_B | 8dcn | crystal structure of clostridioides difficile binary toxin cdtb d4 fragment in complex with bintoxb/9 fab | no | toxin/immune system | 2022-06-16 | 2023-04-05 | x-ray diffraction | 2.6 | 0.26 | 0.227 | 36951574 | 10.1128/jb.00456-22 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV4 | A | B | QVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSNDYTSYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCARCWGYDPYYFDYWGQGTTLTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGKGLEVLFQ | DIVMSQSPSLLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYNLLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | QVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSNDYTSYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCARCWGYDPYYFDYWGQGTTLTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR | DIVMSQSPSLLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYNLLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 22.770294 | 23.394966 | 231 | 219 | 214 | 218 | 220 | 218 | 95 | bintoxb/9 fab heavy chain | bintoxb/9 fab light chain | mus musculus | mus musculus | C | protein | adp-ribosylating binary toxin binding subunit cdtb | clostridioides difficile | 36 | 17 | 0.94 | HL | train |
8dcn_D_E | 8dcn | crystal structure of clostridioides difficile binary toxin cdtb d4 fragment in complex with bintoxb/9 fab | no | toxin/immune system | 2022-06-16 | 2023-04-05 | x-ray diffraction | 2.6 | 0.26 | 0.227 | 36951574 | 10.1128/jb.00456-22 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV4 | D | E | QVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSNDYTSYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCARCWGYDPYYFDYWGQGTTLTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGKGLEVLFQ | DIVMSQSPSLLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYNLLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | QVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSNDYTSYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCARCWGYDPYYFDYWGQGTTLTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR | DIVMSQSPSLLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYNLLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 22.708445 | 23.5157 | 231 | 219 | 214 | 218 | 220 | 218 | 98 | bintoxb/9 fab heavy chain | bintoxb/9 fab light chain | mus musculus | mus musculus | F | protein | adp-ribosylating binary toxin binding subunit cdtb | clostridioides difficile | 31 | 15 | 0.94 | HL | train |
7y58_B | 7y58 | cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus | yes | membrane protein/immune system | 2022-06-16 | 2023-07-12 | electron microscopy | 3.8 | N.A. | N.A. | 37458117 | 10.15252/embj.2023113418 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | MQVQLQESGGGSVQTGGSLRLSCAASGYRYSDNCVGWFRQAPGREREAVATYNSGSSTWYADSVKGRFTISQDSAKSTVYLQMNNLKPEDTAMYYCAGRNRLGSYCYMTGDFAYWGQGTQVTVSS | N.A. | MQVQLQESGGGSVQTGGSLRLSCAASGYRYSDNCVGWFRQAPGREREAVATYNSGSSTWYADSVKGRFTISQDSAKSTVYLQMNNLKPEDTAMYYCAGRNRLGSYCYMTGDFAYWGQGTQVTV | N.A. | 13.820968 | 0 | 125 | 0 | 118 | 0 | 123 | 0 | 0 | single-domain indian camelid antibody (a4) | N.A. | camelus dromedarius | N.A. | A | protein | antiseptic resistance protein | staphylococcus aureus | 43 | 19 | 0.95 | H_only | train |
7y58_C | 7y58 | cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus | yes | membrane protein/immune system | 2022-06-16 | 2023-07-12 | electron microscopy | 3.8 | N.A. | N.A. | 37458117 | 10.15252/embj.2023113418 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | MQVQLQESGGGSVQAGGSLRLSCAASGYTNSRKCMGWFRQIPGKEREGVAAIYGFGRGLILYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCAADSPGSCLSRSGYNYWGQGTQVTVSS | N.A. | VQLQESGGGSVQAGGSLRLSCAASGYTNSRKCMGWFRQIPGKEREGVAAIYGFGRGLILYADSVKGRFTISQDNAKNTVYLQMNSLKPEDTAMYYCAADSPGSCLSRSGYNYWGQGTQVTVS | N.A. | 13.322463 | 0 | 125 | 0 | 115 | 0 | 122 | 0 | 0 | single-domain indian camelid antibody(b7) | N.A. | camelus dromedarius | N.A. | A | protein | antiseptic resistance protein | staphylococcus aureus | 22 | 8 | 0.73 | H_only | train |
8dcr_N | 8dcr | cryo-em structure of dobutamine-bound beta1-adrenergic receptor in complex with heterotrimeric gs-protein | yes | signaling protein | 2022-06-17 | 2022-07-27 | electron microscopy | 2.6 | N.A. | N.A. | 35835792 | 10.1038/s41467-022-31823-1 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | AAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA | N.A. | AAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | 13.948423 | 0 | 140 | 0 | 130 | 0 | 130 | 0 | 0 | nanobody 35 | N.A. | lama glama | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(s) subunit alpha isoforms short | bos taurus;bos taurus | 31;52 | 10;13 | 0.67;0.5 | H_only | train |
8dcs_N | 8dcs | cryo-em structure of cyanopindolol-bound beta1-adrenergic receptor in complex with heterotrimeric gs-protein | yes | signaling protein | 2022-06-17 | 2022-07-27 | electron microscopy | 2.5 | N.A. | N.A. | 35835792 | 10.1038/s41467-022-31823-1 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | AAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA | N.A. | AAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | 13.967217 | 0 | 140 | 0 | 130 | 0 | 130 | 0 | 0 | nanobody 35 | N.A. | lama glama | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(s) subunit alpha isoforms short | bos taurus;bos taurus | 31;50 | 11;11 | 0.69;0.48 | H_only | train |
8dd2_J_I | 8dd2 | human gabaa receptor alpha1-beta2-gamma2 subtype in complex with gaba plus zolpidem | no | membrane protein/immune system | 2022-06-17 | 2022-08-17 | electron microscopy | 2.9 | N.A. | N.A. | 35933426 | 10.1038/s41467-022-32212-4 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV3 | J | I | EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITTDTFSNTAYLQLSSLTSEDTAVYYCARKGLRWAMDYWGQGTSVTVSTAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPSGPISTINPCPPCKECHKCPAPNLEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW... | NIVMTQSPKSMSMSVGERVTLSCKASEYVGTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTIGSVQAEDLADYHCGQSYSYPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQQSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITTDTFSNTAYLQLSSLTSEDTAVYYCARKGLRWAMDYWGQGTSVTVS | NIVMTQSPKSMSMSVGERVTLSCKASEYVGTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTIGSVQAEDLADYHCGQSYSYPTFGAGTKLEL | 13.576077 | 13.121418 | 454 | 213 | 116 | 105 | 116 | 105 | 46 | igg2b fab heavy chain | kappa fab light chain | mus musculus | mus musculus | B | protein | gamma-aminobutyric acid receptor subunit alpha-1 | homo sapiens | 42 | 16 | 0.8 | HL | train |
8dd2_K_L | 8dd2 | human gabaa receptor alpha1-beta2-gamma2 subtype in complex with gaba plus zolpidem | no | membrane protein/immune system | 2022-06-17 | 2022-08-17 | electron microscopy | 2.9 | N.A. | N.A. | 35933426 | 10.1038/s41467-022-32212-4 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV3 | K | L | EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITTDTFSNTAYLQLSSLTSEDTAVYYCARKGLRWAMDYWGQGTSVTVSTAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPSGPISTINPCPPCKECHKCPAPNLEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW... | NIVMTQSPKSMSMSVGERVTLSCKASEYVGTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTIGSVQAEDLADYHCGQSYSYPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQQSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITTDTFSNTAYLQLSSLTSEDTAVYYCARKGLRWAMDYWGQGTSVTVST | NIVMTQSPKSMSMSVGERVTLSCKASEYVGTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTIGSVQAEDLADYHCGQSYSYPTFGAGTKLELK | 13.654894 | 13.227033 | 454 | 213 | 117 | 106 | 117 | 106 | 42 | igg2b fab heavy chain | kappa fab light chain | mus musculus | mus musculus | D | protein | gamma-aminobutyric acid receptor subunit alpha-1 | homo sapiens | 45 | 20 | 0.83 | HL | train |
8dd3_J_I | 8dd3 | human gabaa receptor alpha1-beta2-gamma2 subtype in complex with gaba plus dmcm | no | membrane protein/immune system | 2022-06-17 | 2022-08-17 | electron microscopy | 2.9 | N.A. | N.A. | 35933426 | 10.1038/s41467-022-32212-4 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV3 | J | I | EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITTDTFSNTAYLQLSSLTSEDTAVYYCARKGLRWAMDYWGQGTSVTVSTAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPSGPISTINPCPPCKECHKCPAPNLEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW... | NIVMTQSPKSMSMSVGERVTLSCKASEYVGTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTIGSVQAEDLADYHCGQSYSYPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQQSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITTDTFSNTAYLQLSSLTSEDTAVYYCARKGLRWAMDYWGQGTSVTVS | NIVMTQSPKSMSMSVGERVTLSCKASEYVGTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTIGSVQAEDLADYHCGQSYSYPTFGAGTKLEL | 13.724676 | 13.208084 | 454 | 213 | 116 | 105 | 116 | 105 | 43 | igg2b fab heavy chain | kappa fab light chain | mus musculus | mus musculus | B | protein | gamma-aminobutyric acid receptor subunit alpha-1 | homo sapiens | 39 | 15 | 0.79 | HL | train |
8dd3_K_L | 8dd3 | human gabaa receptor alpha1-beta2-gamma2 subtype in complex with gaba plus dmcm | no | membrane protein/immune system | 2022-06-17 | 2022-08-17 | electron microscopy | 2.9 | N.A. | N.A. | 35933426 | 10.1038/s41467-022-32212-4 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV3 | K | L | EVQLQQSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITTDTFSNTAYLQLSSLTSEDTAVYYCARKGLRWAMDYWGQGTSVTVSTAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPSGPISTINPCPPCKECHKCPAPNLEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW... | NIVMTQSPKSMSMSVGERVTLSCKASEYVGTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTIGSVQAEDLADYHCGQSYSYPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQQSGAELVKPGASVKLSCTASGFNIKDTYMYWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITTDTFSNTAYLQLSSLTSEDTAVYYCARKGLRWAMDYWGQGTSVTVST | NIVMTQSPKSMSMSVGERVTLSCKASEYVGTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTIGSVQAEDLADYHCGQSYSYPTFGAGTKLELK | 13.870254 | 13.354876 | 454 | 213 | 117 | 106 | 117 | 106 | 45 | igg2b fab heavy chain | kappa fab light chain | mus musculus | mus musculus | D | protein | gamma-aminobutyric acid receptor subunit alpha-1 | homo sapiens | 39 | 16 | 0.84 | HL | train |
8dcy_A_B | 8dcy | cchfv gp38 hoti/kosovo bound with 13g8 fab | no | viral protein | 2022-06-17 | 2022-12-07 | x-ray diffraction | 3.62 | 0.299 | 0.281 | 36435827 | 10.1038/s41467-022-34923-0 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV1 | A | B | DVQLQQSGPGLVAPSQSLSITCTVSGFSLTNYGIHWVRQPPGKGLEWLGVIWAGGYTKYNSALMSRLSMSKDNSKSQVFLKMNSLQTDDTAMYYCARDEVRRDYYAMDHWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSHHHHHHHH | DIQMTQSPAILSASPGEKVTMTCWASSGVSYMHWYQQKPGSSPKPWIFATSNLASGVPARFSGSGSGTSYSLTISRVEAEDAATYYCQQWSFNPLTFGAGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VQLQQSGPGLVAPSQSLSITCTVSGFSLTNYGIHWVRQPPGKGLEWLGVIWAGGYTKYNSALMSRLSMSKDNSKSQVFLKMNSLQTDDTAMYYCARDEVRRDYYAMDHWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVE | DIQMTQSPAILSASPGEKVTMTCWASSGVSYMHWYQQKPGSSPKPWIFATSNLASGVPARFSGSGSGTSYSLTISRVEAEDAATYYCQQWSFNPLTFGAGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 21.173111 | 22.898773 | 233 | 213 | 202 | 208 | 218 | 210 | 95 | 13g8 heavy chain | 13g8 light chain | mus musculus | mus musculus | C | protein | envelopment polyprotein | crimean-congo hemorrhagic fever orthonairovirus | 30 | 14 | 0.93 | HL | train |
8ddk_A_B | 8ddk | cchfv gp38 hoti/kosovo bound with cc5_17 | no | viral protein | 2022-06-18 | 2022-12-14 | x-ray diffraction | 3.86 | 0.335 | 0.304 | 36435827 | 10.1038/s41467-022-34923-0 | 0 | auth_asym_id | FabH:FabL | IGHV5 | IGKV1 | A | B | EVQLVQSGAEVKKPGESLRISCKGSGYSFTSYWIGWVRQMPGKGLEWMGIIYPGDSDTRYSPSFQGQVTISADKSISTAYLQWTSLKASDTAMYYCARQLGGSSFGNYYDSGSYYTAAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSHHHHHHHH | DIQMTQSPSSLSASVGDRVTITCRASQSINNYLNWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFASYYCQQSYRGTFGQGTKVEFKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVQSGAEVKKPGESLRISCKGSGYSFTSYWIGWVRQMPGKGLEWMGIIYPGDSDTRYSPSFQGQVTISADKSISTAYLQWTSLKASDTAMYYCARQLGGSSFGNYYDSGSYYTAAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDK | IQMTQSPSSLSASVGDRVTITCRASQSINNYLNWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFASYYCQQSYRGTFGQGTKVEFKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS | 21.48706 | 21.524874 | 243 | 212 | 188 | 141 | 226 | 200 | 45 | heavy chain cc5-17 | light chain cc5_17 | homo sapiens | homo sapiens | C | protein | envelopment polyprotein | crimean-congo hemorrhagic fever orthonairovirus | 31 | 8 | 0.5 | HL | train |
7y64_S | 7y64 | cryo-em structure of c5a-bound c5ar1 in complex with gi protein | no | membrane protein | 2022-06-18 | 2023-03-01 | electron microscopy | 2.9 | N.A. | N.A. | 36806352 | 10.1038/s41422-023-00779-2 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAAENLYFQGHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.826454 | 0 | 266 | 0 | 231 | 0 | 246 | 0 | 0 | scfv16 | N.A. | mus musculus | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 28;22 | 17;9 | 1.0;0.82 | H_only | train |
7y65_S | 7y65 | cryo-em structure of c5a peptide-bound c5ar1 in complex with gi protein | no | membrane protein | 2022-06-18 | 2023-03-01 | electron microscopy | 3.2 | N.A. | N.A. | 36806352 | 10.1038/s41422-023-00779-2 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | MDVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAAENLYFQGHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 16.871328 | 0 | 267 | 0 | 194 | 0 | 246 | 0 | 0 | scfv16 | N.A. | mus musculus | N.A. | A | protein | guanine nucleotide-binding protein g(i) subunit alpha-1 | homo sapiens | 38 | 10 | 0.38 | H_only | train |
7y66_S | 7y66 | cryo-em structure of bm213-bound c5ar1 in complex with gi protein | no | membrane protein | 2022-06-18 | 2023-03-01 | electron microscopy | 2.9 | N.A. | N.A. | 36806352 | 10.1038/s41422-023-00779-2 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | MDVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAAENLYFQGHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.810057 | 0 | 267 | 0 | 231 | 0 | 246 | 0 | 0 | scfv16 | N.A. | mus musculus | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 33;20 | 20;9 | 0.95;0.9 | H_only | train |
8de4_B_C | 8de4 | native serotonin transporter in complex with 15b8 fab in the presence of methamphetamine | no | membrane protein | 2022-06-19 | 2023-07-05 | electron microscopy | 2.9 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV7 | B | C | QVQLQQSGPELVKLGASVRISCKASGYRFSYSWMNWVKQRPGKGLEWIGRIYPGDGDTKYSGKFKGKATLTADKSSSTVYMQLSSLTSEDSAVYFCARSAYGSEGFAMDYWGQGTSVT | DIVLTQSPASLAVSLGQRATISCRASESVDNYGISFLNWFQQKPGQPPKLLIYAASNQGSGVPARFSGSGSGTYFSLNIHPMEEDDTAVYFCQQTKGVSWTFGGGTKVEI | QVQLQQSGPELVKLGASVRISCKASGYRFSYSWMNWVKQRPGKGLEWIGRIYPGDGDTKYSGKFKGKATLTADKSSSTVYMQLSSLTSEDSAVYFCARSAYGSEGFAMDYWGQGTSVT | DIVLTQSPASLAVSLGQRATISCRASESVDNYGISFLNWFQQKPGQPPKLLIYAASNQGSGVPARFSGSGSGTYFSLNIHPMEEDDTAVYFCQQTKGVSWTFGGGTKVEI | 13.665728 | 13.365172 | 118 | 110 | 118 | 110 | 118 | 110 | 49 | 15b8 fab heavy chain variable domain | 15b8 fab light chain variable domain | mus musculus | mus musculus | A | protein | transporter | sus scrofa | 35 | 14 | 0.88 | HL | train |
8de6_E_F | 8de6 | oligomeric c9 in complex with ae11 fab | no | immune system | 2022-06-20 | 2023-01-25 | electron microscopy | 3.2 | N.A. | N.A. | 36639734 | 10.1038/s42003-023-04431-y | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | E | F | MAVLALLFCLVTFPSCILSQVQLKESGPGLVAPSQSLSITCTVSGFSLTVYGVNWIRQPPGKGLEWLGMIWGDGSTDYNSALKSRLSITKDNSKSQVFLKMNSLQTDDTARYYCARDRSYGGSSAWFGYWGQGTLVTVSA | MSSAQFLGLLLLCFQGTRCDIQMTQTTSSLSASLGDRVTISCRASHDISNYLNWYQQKPDGTLKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDVATYFCQQGNYLPYTFGGGTKLEIK | QVQLKESGPGLVAPSQSLSITCTVSGFSLTVYGVNWIRQPPGKGLEWLGMIWGDGSTDYNSALKSRLSITKDNSKSQVFLKMNSLQTDDTARYYCARDRSYGGSSAWFGYWGQGTLVTVSA | DIQMTQTTSSLSASLGDRVTISCRASHDISNYLNWYQQKPDGTLKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDVATYFCQQGNYLPYTFGGGTKLEIK | 13.956247 | 13.566951 | 140 | 126 | 121 | 107 | 121 | 107 | 45 | ae11 fab vh | ae11 fab vl | mus musculus | mus musculus | A;C | protein;protein | complement component c9;complement component c9 | homo sapiens;homo sapiens | 35;25 | 17;13 | 0.77;1.0 | HL | train |
8de6_B_I | 8de6 | oligomeric c9 in complex with ae11 fab | no | immune system | 2022-06-20 | 2023-01-25 | electron microscopy | 3.2 | N.A. | N.A. | 36639734 | 10.1038/s42003-023-04431-y | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | B | I | MAVLALLFCLVTFPSCILSQVQLKESGPGLVAPSQSLSITCTVSGFSLTVYGVNWIRQPPGKGLEWLGMIWGDGSTDYNSALKSRLSITKDNSKSQVFLKMNSLQTDDTARYYCARDRSYGGSSAWFGYWGQGTLVTVSA | MSSAQFLGLLLLCFQGTRCDIQMTQTTSSLSASLGDRVTISCRASHDISNYLNWYQQKPDGTLKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDVATYFCQQGNYLPYTFGGGTKLEIK | QVQLKESGPGLVAPSQSLSITCTVSGFSLTVYGVNWIRQPPGKGLEWLGMIWGDGSTDYNSALKSRLSITKDNSKSQVFLKMNSLQTDDTARYYCARDRSYGGSSAWFGYWGQGTLVTVSA | DIQMTQTTSSLSASLGDRVTISCRASHDISNYLNWYQQKPDGTLKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDVATYFCQQGNYLPYTFGGGTKLEIK | 13.9679 | 13.56626 | 140 | 126 | 121 | 107 | 121 | 107 | 45 | ae11 fab vh | ae11 fab vl | mus musculus | mus musculus | A;G | protein;protein | complement component c9;complement component c9 | homo sapiens;homo sapiens | 25;36 | 12;15 | 0.92;0.79 | HL | train |
8ded_U_V | 8ded | cryo-em structure of western equine encephalitis virus vlp in complex with skw19 fab | no | virus/immune system | 2022-06-20 | 2023-07-05 | electron microscopy | 4.1 | N.A. | N.A. | 37295404 | 10.1016/j.cell.2023.05.019 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV2 | U | V | EVQLVESGGGLAKPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVSVISSHYSTYYADSVKGRFTISRDNSKNTVSLQVNSLRAEDTAVYYCAKVGRSGYCTASGCNALLFDWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ | DVVMTQSPLSLPVTPGQPASISCRSSQSLVHSNGNTSLSWYQQKAGHPPRLLIYQVSNRYSGVPDRFSGTGAGTDFTLTISRVETEDVGVYYCGQGAHLPPAFGQGTKVEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLAKPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVSVISSHYSTYYADSVKGRFTISRDNSKNTVSLQVNSLRAEDTAVYYCAKVGRSGYCTASGCNALLFDWFDVWGPGVLVTVSS | DVVMTQSPLSLPVTPGQPASISCRSSQSLVHSNGNTSLSWYQQKAGHPPRLLIYQVSNRYSGVPDRFSGTGAGTDFTLTISRVETEDVGVYYCGQGAHLPPAFGQGTKVEIK | 14.553665 | 13.597745 | 241 | 219 | 130 | 112 | 130 | 112 | 40 | skw19 fab heavy chain | skw19 fab light chain | homo sapiens | homo sapiens | F;G | protein;protein | spike glycoprotein e1;spike glycoprotein e2 | western equine encephalitis virus;western equine encephalitis virus | 10;32 | 5;13 | 1.0;0.81 | HL | train |
8ded_H_L | 8ded | cryo-em structure of western equine encephalitis virus vlp in complex with skw19 fab | no | virus/immune system | 2022-06-20 | 2023-07-05 | electron microscopy | 4.1 | N.A. | N.A. | 37295404 | 10.1016/j.cell.2023.05.019 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV2 | H | L | EVQLVESGGGLAKPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVSVISSHYSTYYADSVKGRFTISRDNSKNTVSLQVNSLRAEDTAVYYCAKVGRSGYCTASGCNALLFDWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ | DVVMTQSPLSLPVTPGQPASISCRSSQSLVHSNGNTSLSWYQQKAGHPPRLLIYQVSNRYSGVPDRFSGTGAGTDFTLTISRVETEDVGVYYCGQGAHLPPAFGQGTKVEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLAKPGGSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVSVISSHYSTYYADSVKGRFTISRDNSKNTVSLQVNSLRAEDTAVYYCAKVGRSGYCTASGCNALLFDWFDVWGPGVLVTVSS | DVVMTQSPLSLPVTPGQPASISCRSSQSLVHSNGNTSLSWYQQKAGHPPRLLIYQVSNRYSGVPDRFSGTGAGTDFTLTISRVETEDVGVYYCGQGAHLPPAFGQGTKVEIK | 14.544688 | 13.549742 | 241 | 219 | 130 | 112 | 130 | 112 | 38 | skw19 fab heavy chain | skw19 fab light chain | homo sapiens | homo sapiens | K | protein | spike glycoprotein e2 | western equine encephalitis virus | 30 | 12 | 0.86 | HL | train |
8def_S_T | 8def | cryo-em structure of western equine encephalitis virus vlp in complex with skw24 fab | no | virus/immune system | 2022-06-20 | 2023-07-05 | electron microscopy | 4.2 | N.A. | N.A. | 37295404 | 10.1016/j.cell.2023.05.019 | 0 | auth_asym_id | VH:VL | IGHV3 | IGLV3 | S | T | EVQLVESGGGLVQPGGSLRLSCVASGFTFSDYRMAWVRQATGKGLEWVSTISQPSGTNTYYLDPVKGRFTVSRDNAKNTLYLQMHSLRAEDTAVYYCARVVTESRPPAAWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ | SYELTQPPSVSASPGQTARITCGGINIGSELVHWYQQKPPQAPVLVIYANGERPSGIPERFSGSNSGNTATLTISGVEAGDEADYYCQLWDISSDHNYIFGDGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAECS | EVQLVESGGGLVQPGGSLRLSCVASGFTFSDYRMAWVRQATGKGLEWVSTISQPSGTNTYYLDPVKGRFTVSRDNAKNTLYLQMHSLRAEDTAVYYCARVVTESRPPAAWFDVWGPGVLVTVSS | SYELTQPPSVSASPGQTARITCGGINIGSELVHWYQQKPPQAPVLVIYANGERPSGIPERFSGSNSGNTATLTISGVEAGDEADYYCQLWDISSDHNYIFGDGTRL | 14.088625 | 13.313271 | 235 | 215 | 124 | 106 | 124 | 106 | 44 | skw24 fab heavy chain | skw24 fab light chain | homo sapiens | homo sapiens | G | protein | spike glycoprotein e2 | western equine encephalitis virus | 50 | 25 | 0.86 | HL | train |
8def_U_V | 8def | cryo-em structure of western equine encephalitis virus vlp in complex with skw24 fab | no | virus/immune system | 2022-06-20 | 2023-07-05 | electron microscopy | 4.2 | N.A. | N.A. | 37295404 | 10.1016/j.cell.2023.05.019 | 0 | auth_asym_id | VH:VL | IGHV3 | IGLV3 | U | V | EVQLVESGGGLVQPGGSLRLSCVASGFTFSDYRMAWVRQATGKGLEWVSTISQPSGTNTYYLDPVKGRFTVSRDNAKNTLYLQMHSLRAEDTAVYYCARVVTESRPPAAWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ | SYELTQPPSVSASPGQTARITCGGINIGSELVHWYQQKPPQAPVLVIYANGERPSGIPERFSGSNSGNTATLTISGVEAGDEADYYCQLWDISSDHNYIFGDGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAECS | EVQLVESGGGLVQPGGSLRLSCVASGFTFSDYRMAWVRQATGKGLEWVSTISQPSGTNTYYLDPVKGRFTVSRDNAKNTLYLQMHSLRAEDTAVYYCARVVTESRPPAAWFDVWGPGVLVTVSS | SYELTQPPSVSASPGQTARITCGGINIGSELVHWYQQKPPQAPVLVIYANGERPSGIPERFSGSNSGNTATLTISGVEAGDEADYYCQLWDISSDHNYIFGDGTRL | 14.070924 | 13.27111 | 235 | 215 | 124 | 106 | 124 | 106 | 45 | skw24 fab heavy chain | skw24 fab light chain | homo sapiens | homo sapiens | J;K | protein;protein | spike glycoprotein e1;spike glycoprotein e2 | western equine encephalitis virus;western equine encephalitis virus | 11;50 | 5;24 | 1.0;0.86 | HL | train |
7y6k_J_E | 7y6k | cryo-em structure of sars-cov-2 receptor binding domain in complex with k202.b bispecific antibody | yes | viral protein/immune system | 2022-06-20 | 2023-07-19 | electron microscopy | 3.34 | N.A. | N.A. | 36870394 | 10.1016/j.antiviral.2023.105576 | 0 | auth_asym_id | FabH:VHVL+ | IGHV3 | N.A. | J | E | EVQLLESGGGLVQPGGSLRLSCAASGFTFSDYAMSWVRQAPGKGLEWVSWIYSGSGNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARFPIARTSNSQSSYDGMDVWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCPAPEFLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDW... | EVQVLESGGGLVQPGGSLRLSCAASGFTFSSYDMSWVRQAPGKGLEWVSGISYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDVNFVPLVTFDYWGQGTLVTVSSGGGGSGGGGSGGGGSQSVLTQPPSASGTPGQRVTLSCTGSSSNIGSNSVTWYQQLPGTAPKLLIYDDNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCGTWDYSLSAYVFGGGTKLTVLGGGGSGGGGSGGGGSQSVLTQPPSASGTPGQRVTISCSGSSSNIGSNAVSWYQQLPGTAPKLLIYADNKRPSGV... | VQLLESGGGLVQPGGSLRLSCAASGFTFSDYAMSWVRQAPGKGLEWVSWIYSGSGNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARFPIARTSNSQSSYDGMDVWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDK | EVQVLESGGGLVQPGGSLRLSCAASGFTFSSYDMSWVRQAPGKGLEWVSGISYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDVNFVPLVTFDYWGQGTLVTVSSGGGGSGGGGSGGGGSQSVLTQPPSASGTPGQRVTLSCTGSSSNIGSNSVTWYQQLPGTAPKLLIYDDNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCGTWDYSLSAYVFGGGTKLTVLGGGGSGGGGSGGGGSQSVLTQPPSASGTPGQRVTISCSGSSSNIGSNAVSWYQQLPGTAPKLLIYADNKRPSGV... | 19.30406 | 31.87697 | 454 | 478 | 198 | 441 | 222 | 475 | 97 | fab region of heavy chain from k202.b, bispecific antibody | scfv region and fab region of light chain from k202.b, bispecific antibody fusion protein | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 102 | 25 | 0.52 | HL | train |
8df5_A_B | 8df5 | sars-cov-2 beta rbd in complex with human ace2 and s304 fab and s309 fab | no | viral protein/hydrolase/immune system | 2022-06-21 | 2022-08-03 | x-ray diffraction | 2.7 | 0.217 | 0.177 | 35762884 | 10.1126/science.abo7896 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | A | B | QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.618872 | 22.820435 | 230 | 214 | 224 | 214 | 228 | 214 | 95 | s309 fab heavy chain | s309 fab light chain | homo sapiens | homo sapiens | R | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 39 | 17 | 0.94 | HL | train |
8df5_H_L | 8df5 | sars-cov-2 beta rbd in complex with human ace2 and s304 fab and s309 fab | no | viral protein/hydrolase/immune system | 2022-06-21 | 2022-08-03 | x-ray diffraction | 2.7 | 0.217 | 0.177 | 35762884 | 10.1126/science.abo7896 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYDMHWVRQTTGKGLEWVSTIGTAGDTYYPDSVKGRFTISREDAKNSLYLQMNSLRAGDTAVYYCARGDSSGYYYYFDYWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKAC | DIQMTQSPSSLSAAVGDRVTITCRASQSIGSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFAIYYCQQSYVSPTYTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYDMHWVRQTTGKGLEWVSTIGTAGDTYYPDSVKGRFTISREDAKNSLYLQMNSLRAGDTAVYYCARGDSSGYYYYFDYWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKAC | DIQMTQSPSSLSAAVGDRVTITCRASQSIGSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFAIYYCQQSYVSPTYTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 20.627106 | 23.481949 | 223 | 215 | 217 | 215 | 223 | 215 | 96 | s304 fab heavy chain | s304 fab light chain | homo sapiens | homo sapiens | R | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 57 | 22 | 0.81 | HL | train |
8df5_C_D | 8df5 | sars-cov-2 beta rbd in complex with human ace2 and s304 fab and s309 fab | no | viral protein/hydrolase/immune system | 2022-06-21 | 2022-08-03 | x-ray diffraction | 2.7 | 0.217 | 0.177 | 35762884 | 10.1126/science.abo7896 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | C | D | QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.148655 | 22.800495 | 230 | 214 | 230 | 214 | 230 | 214 | 101 | s309 fab heavy chain | s309 fab light chain | homo sapiens | homo sapiens | S | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 42 | 18 | 0.9 | HL | train |
8df5_M_N | 8df5 | sars-cov-2 beta rbd in complex with human ace2 and s304 fab and s309 fab | no | viral protein/hydrolase/immune system | 2022-06-21 | 2022-08-03 | x-ray diffraction | 2.7 | 0.217 | 0.177 | 35762884 | 10.1126/science.abo7896 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | M | N | QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYDMHWVRQTTGKGLEWVSTIGTAGDTYYPDSVKGRFTISREDAKNSLYLQMNSLRAGDTAVYYCARGDSSGYYYYFDYWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKAC | DIQMTQSPSSLSAAVGDRVTITCRASQSIGSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFAIYYCQQSYVSPTYTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGGLVQPGGSLRLSCAASGFTFSSYDMHWVRQTTGKGLEWVSTIGTAGDTYYPDSVKGRFTISREDAKNSLYLQMNSLRAGDTAVYYCARGDSSGYYYYFDYWGQGTLLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSAAVGDRVTITCRASQSIGSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFAIYYCQQSYVSPTYTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 20.829832 | 23.526186 | 223 | 215 | 218 | 215 | 221 | 215 | 94 | s304 fab heavy chain | s304 fab light chain | homo sapiens | homo sapiens | S | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 56 | 21 | 0.81 | HL | train |
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