PDB_ID_chain stringlengths 6 10 | PDB_ID stringlengths 4 4 | Title stringlengths 4 230 | Mutation(s) stringclasses 2
values | Classification stringclasses 305
values | Deposit_date stringdate 1976-03-17 00:00:00 2026-01-20 00:00:00 | Release_date stringdate 1976-05-19 00:00:00 2026-02-25 00:00:00 | Method stringclasses 5
values | Resolution stringclasses 459
values | R_free stringclasses 227
values | R_work stringclasses 211
values | PMID stringlengths 4 8 | DOI stringlengths 4 68 | Model_index int64 0 76 | Asym_ID_type stringclasses 2
values | Ab_type stringclasses 30
values | H_subgroup stringclasses 8
values | L_subgroup stringclasses 19
values | H_chain_ID stringclasses 60
values | L_chain_ID stringclasses 58
values | H_fas_seq stringlengths 4 919 | L_fas_seq stringlengths 4 627 | H_filled_pdb_seq stringlengths 4 896 | L_filled_pdb_seq stringlengths 4 523 | H_mean_radius float64 0 79.7 | L_mean_radius float64 0 84.3 | H_fas_seq_len int64 0 919 | L_fas_seq_len int64 0 627 | H_pdb_seq_len int64 0 879 | L_pdb_seq_len int64 0 523 | H_filled_seq_len int64 0 896 | L_filled_seq_len int64 0 523 | HL_inf_res_num int64 0 175 | H_mol_name stringlengths 2 331 | L_mol_name stringlengths 2 151 | H_species stringclasses 68
values | L_species stringclasses 42
values | Ag_chain_ID(s) stringclasses 279
values | Ag_type(s) stringclasses 16
values | Ag_mol_name(s) stringlengths 2 390 | Ag_species stringclasses 743
values | Ab_ag_inf_res_num stringlengths 1 11 | CDR_inf_res_num stringclasses 444
values | CDR_inf_res_ratio stringlengths 1 19 | hl_label stringclasses 3
values | split stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8dls_H_L | 8dls | cryo-em structure of sars-cov-2 gamma (p.1) spike protein in complex with fab 4a8 (focused refinement of ntd and 4a8) | no | viral protein | 2022-07-08 | 2022-08-31 | electron microscopy | 2.66 | N.A. | N.A. | 35982054 | 10.1038/s41467-022-32262-8 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV2 | H | L | MDWTWRVFCLLAVAPGAHSEVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSHHHHHH | MVLQTQVFISLLLWISGAYGEIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIKGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSS | EIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIK | 15.081216 | 13.800704 | 258 | 238 | 128 | 112 | 128 | 112 | 50 | fab 4a8 heavy chain | fab 4a8 light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 45 | 21 | 0.78 | HL | train |
8dlx_H | 8dlx | cryo-em structure of sars-cov-2 epsilon (b.1.429) spike protein in complex with vh ab6 | no | viral protein | 2022-07-08 | 2022-08-31 | electron microscopy | 2.45 | N.A. | N.A. | 35982054 | 10.1038/s41467-022-32262-8 | 0 | auth_asym_id | VH | IGHV3 | N.A. | H | N.A. | EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWIGNIYHDGSTFYNPSLKSLVTISRDDSTNTLYLQMNSLRAEDTAIYYCARVWLYGSGYMDVWGKGTLVTVSS | N.A. | EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWIGNIYHDGSTFYNPSLKSLVTISRDDSTNTLYLQMNSLRAEDTAIYYCARVWLYGSGYMDVWGKGTLVTVSS | N.A. | 13.982556 | 0 | 119 | 0 | 119 | 0 | 119 | 0 | 0 | vh ab6 | N.A. | homo sapiens | N.A. | A;C | protein;protein | spike glycoprotein;spike glycoprotein | severe acute respiratory syndrome coronavirus 2;severe acute respiratory syndrome coronavirus 2 | 37;51 | 9;14 | 0.64;0.5 | H_only | train |
8dly_H | 8dly | cryo-em structure of sars-cov-2 epsilon (b.1.429) spike protein in complex with vh ab6 (focused refinement of ntd and vh ab6) | no | viral protein/immune system | 2022-07-08 | 2022-08-31 | electron microscopy | 3 | N.A. | N.A. | 35982054 | 10.1038/s41467-022-32262-8 | 0 | auth_asym_id | VH | IGHV3 | N.A. | H | N.A. | EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWIGNIYHDGSTFYNPSLKSLVTISRDDSTNTLYLQMNSLRAEDTAIYYCARVWLYGSGYMDVWGKGTLVTVSS | N.A. | EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWIGNIYHDGSTFYNPSLKSLVTISRDDSTNTLYLQMNSLRAEDTAIYYCARVWLYGSGYMDVWGKGTLVTVSS | N.A. | 13.978414 | 0 | 119 | 0 | 119 | 0 | 119 | 0 | 0 | vh ab6 | N.A. | homo sapiens | N.A. | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 50 | 15 | 0.54 | H_only | train |
8dlz_H | 8dlz | cryo-em structure of sars-cov-2 d614g spike protein in complex with vh ab6 | yes | viral protein/immune system | 2022-07-08 | 2022-08-31 | electron microscopy | 2.57 | N.A. | N.A. | 35982054 | 10.1038/s41467-022-32262-8 | 0 | auth_asym_id | VH | IGHV3 | N.A. | H | N.A. | EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWIGNIYHDGSTFYNPSLKSLVTISRDDSTNTLYLQMNSLRAEDTAIYYCARVWLYGSGYMDVWGKGTLVTVSS | N.A. | EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWIGNIYHDGSTFYNPSLKSLVTISRDDSTNTLYLQMNSLRAEDTAIYYCARVWLYGSGYMDVWGKGTLVTVSS | N.A. | 14.045019 | 0 | 119 | 0 | 119 | 0 | 119 | 0 | 0 | vh ab6 | N.A. | homo sapiens | N.A. | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 52 | 15 | 0.54 | H_only | train |
8dm0_H | 8dm0 | cryo-em structure of sars-cov-2 d614g spike protein in complex with vh ab6 (focused refinement of ntd and vh ab6) | yes | viral protein/immune system | 2022-07-08 | 2022-08-31 | electron microscopy | 3.21 | N.A. | N.A. | 35982054 | 10.1038/s41467-022-32262-8 | 0 | auth_asym_id | VH | IGHV3 | N.A. | H | N.A. | EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWIGNIYHDGSTFYNPSLKSLVTISRDDSTNTLYLQMNSLRAEDTAIYYCARVWLYGSGYMDVWGKGTLVTVSS | N.A. | EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWIGNIYHDGSTFYNPSLKSLVTISRDDSTNTLYLQMNSLRAEDTAIYYCARVWLYGSGYMDVWGKGTLVTVSS | N.A. | 13.99497 | 0 | 119 | 0 | 119 | 0 | 119 | 0 | 0 | vh ab6 | N.A. | homo sapiens | N.A. | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 51 | 15 | 0.54 | H_only | train |
8dm3_H_L | 8dm3 | cryo-em structure of sars-cov-2 omicron ba.2 spike protein in complex with fab 4a8 | no | viral protein/immune system | 2022-07-08 | 2023-01-25 | electron microscopy | 2.37 | N.A. | N.A. | 36640338 | 10.1016/j.celrep.2022.111964 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV2 | H | L | MDWTWRVFCLLAVAPGAHSEVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSHHHHHH | MVLQTQVFISLLLWISGAYGEIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIKGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSS | EIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIK | 15.249283 | 13.881563 | 258 | 238 | 128 | 112 | 128 | 112 | 34 | fab 4a8 heavy chain | fab 4a8 light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 38 | 21 | 0.91 | HL | train |
8dm3_M_N | 8dm3 | cryo-em structure of sars-cov-2 omicron ba.2 spike protein in complex with fab 4a8 | no | viral protein/immune system | 2022-07-08 | 2023-01-25 | electron microscopy | 2.37 | N.A. | N.A. | 36640338 | 10.1016/j.celrep.2022.111964 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV2 | M | N | MDWTWRVFCLLAVAPGAHSEVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSHHHHHH | MVLQTQVFISLLLWISGAYGEIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIKGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSS | EIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIK | 15.195458 | 13.857559 | 258 | 238 | 128 | 112 | 128 | 112 | 48 | fab 4a8 heavy chain | fab 4a8 light chain | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 39 | 23 | 0.88 | HL | train |
8dm3_P_Q | 8dm3 | cryo-em structure of sars-cov-2 omicron ba.2 spike protein in complex with fab 4a8 | no | viral protein/immune system | 2022-07-08 | 2023-01-25 | electron microscopy | 2.37 | N.A. | N.A. | 36640338 | 10.1016/j.celrep.2022.111964 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV2 | P | Q | MDWTWRVFCLLAVAPGAHSEVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSHHHHHH | MVLQTQVFISLLLWISGAYGEIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIKGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSS | EIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIK | 15.286193 | 13.75859 | 258 | 238 | 128 | 112 | 128 | 112 | 51 | fab 4a8 heavy chain | fab 4a8 light chain | homo sapiens | homo sapiens | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 39 | 23 | 0.92 | HL | train |
8dm4_H_L | 8dm4 | cryo-em structure of sars-cov-2 omicron ba.2 spike protein in complex with fab 4a8 (focused refinement of ntd and 4a8) | no | viral protein/immune system | 2022-07-08 | 2023-01-25 | electron microscopy | 2.45 | N.A. | N.A. | 36640338 | 10.1016/j.celrep.2022.111964 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV2 | H | L | MDWTWRVFCLLAVAPGAHSEVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCGSHHHHHH | MVLQTQVFISLLLWISGAYGEIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIKGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLVESGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETMYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATSTAVAGTPDLFDYYYGMDVWGQGTTVTVSS | EIVMTQSPLSSPVTLGQPASISCRSSQSLVHSDGNTYLSWLQQRPGQPPRLLIYKISNRFSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCTQATQFPYTFGQGTKVDIK | 15.143521 | 13.699648 | 258 | 238 | 128 | 112 | 128 | 112 | 54 | fab 4a8 heavy chain | fab 4a8 light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 41 | 23 | 0.88 | HL | train |
8dmj_H_L | 8dmj | postfusion nipah virus fusion protein in complex with fab 1h1 | no | viral protein/immune system | 2022-07-08 | 2023-07-12 | electron microscopy | 3.2 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | H | L | AVQLQQSGAELMRPGASMKISCKATGYTFSSYWIDWVKQRPGHGLEWIGEILPGSGDTNYNENFKGKAAFTADTSSNTAYMQLTSLTSEDSAVFYCARGGRYHGQGFFDYWGQGTTLTVSS | AIQMTQSPASLSASVGETVTITCRPSENVHIYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSASGTQFSLKINSLQPEDFGSYYCQHFWSIPYTFGGGTKLEIK | AVQLQQSGAELMRPGASMKISCKATGYTFSSYWIDWVKQRPGHGLEWIGEILPGSGDTNYNENFKGKAAFTADTSSNTAYMQLTSLTSEDSAVFYCARGGRYHGQGFFDYWGQGTTLTVSS | AIQMTQSPASLSASVGETVTITCRPSENVHIYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSASGTQFSLKINSLQPEDFGSYYCQHFWSIPYTFGGGTKLEIK | 13.831677 | 13.28354 | 121 | 107 | 121 | 107 | 121 | 107 | 44 | antibody 1h1 heavy chain | antibody 1h1 light chain | mus musculus | mus musculus | B | protein | fusion glycoprotein f0,fusion glycoprotein f1 | nipah henipavirus | 31 | 16 | 0.94 | HL | train |
8dmj_D_E | 8dmj | postfusion nipah virus fusion protein in complex with fab 1h1 | no | viral protein/immune system | 2022-07-08 | 2023-07-12 | electron microscopy | 3.2 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | D | E | AVQLQQSGAELMRPGASMKISCKATGYTFSSYWIDWVKQRPGHGLEWIGEILPGSGDTNYNENFKGKAAFTADTSSNTAYMQLTSLTSEDSAVFYCARGGRYHGQGFFDYWGQGTTLTVSS | AIQMTQSPASLSASVGETVTITCRPSENVHIYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSASGTQFSLKINSLQPEDFGSYYCQHFWSIPYTFGGGTKLEIK | AVQLQQSGAELMRPGASMKISCKATGYTFSSYWIDWVKQRPGHGLEWIGEILPGSGDTNYNENFKGKAAFTADTSSNTAYMQLTSLTSEDSAVFYCARGGRYHGQGFFDYWGQGTTLTVSS | AIQMTQSPASLSASVGETVTITCRPSENVHIYLAWYQQKQGKSPQLLVYNAKTLADGVPSRFSGSASGTQFSLKINSLQPEDFGSYYCQHFWSIPYTFGGGTKLEIK | 13.7874 | 13.25619 | 121 | 107 | 121 | 107 | 121 | 107 | 44 | antibody 1h1 heavy chain | antibody 1h1 light chain | mus musculus | mus musculus | C | protein | fusion glycoprotein f0,fusion glycoprotein f1 | nipah henipavirus | 32 | 18 | 0.9 | HL | train |
7yfc_C | 7yfc | cryo-em structure of the histamine-bound histamine h4 receptor and gq complex | no | membrane protein | 2022-07-08 | 2023-10-25 | electron microscopy | 3 | N.A. | N.A. | 37863901 | 10.1038/s41467-023-42260-z | 0 | auth_asym_id | scFv | N.A. | N.A. | C | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAAHHHHHHHH | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.555962 | 0 | 259 | 0 | 235 | 0 | 247 | 0 | 0 | scfv16 | N.A. | mus musculus | N.A. | A;B | protein;protein | engineered g-alpha-q;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 31;25 | 20;10 | 1.0;0.77 | H_only | train |
7yfc_N | 7yfc | cryo-em structure of the histamine-bound histamine h4 receptor and gq complex | no | membrane protein | 2022-07-08 | 2023-10-25 | electron microscopy | 3 | N.A. | N.A. | 37863901 | 10.1038/s41467-023-42260-z | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | MQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | 13.899963 | 0 | 129 | 0 | 128 | 0 | 128 | 0 | 0 | nb35 | N.A. | lama glama | N.A. | A;B | protein;protein | engineered g-alpha-q;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 44;31 | 11;11 | 0.52;0.69 | H_only | train |
8dn7_A_B | 8dn7 | the crystal structure of the pisum sativum toc75 potra domains in complex with fab ax9 | no | membrane protein/immune system | 2022-07-10 | 2023-05-17 | x-ray diffraction | 2 | 0.259 | 0.211 | 36977410 | 10.1016/j.str.2023.03.002 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | A | B | EISEVQLVESGGGLVQPGGSLRLSCAASGFNFYYSSIHWVRQAPGKGLEWVASISSYYGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARETYYTEFSWSYSWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTSRHHHHHH | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSIVWEPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFNFYYSSIHWVRQAPGKGLEWVASISSYYGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARETYYTEFSWSYSWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | IQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSIVWEPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 21.979242 | 23.339937 | 245 | 217 | 223 | 214 | 228 | 214 | 118 | fabax9 heavy chain | fabax9 light chain | synthetic construct | synthetic construct | C | protein | protein toc75, chloroplastic | pisum sativum | 55 | 21 | 0.84 | HL | train |
8dn7_D_H | 8dn7 | the crystal structure of the pisum sativum toc75 potra domains in complex with fab ax9 | no | membrane protein/immune system | 2022-07-10 | 2023-05-17 | x-ray diffraction | 2 | 0.259 | 0.211 | 36977410 | 10.1016/j.str.2023.03.002 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | D | H | EISEVQLVESGGGLVQPGGSLRLSCAASGFNFYYSSIHWVRQAPGKGLEWVASISSYYGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARETYYTEFSWSYSWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTSRHHHHHH | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSIVWEPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VQLVESGGGLVQPGGSLRLSCAASGFNFYYSSIHWVRQAPGKGLEWVASISSYYGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARETYYTEFSWSYSWGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | IQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSIVWEPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.210146 | 23.372255 | 245 | 217 | 224 | 215 | 228 | 215 | 115 | fabax9 heavy chain | fabax9 light chain | synthetic construct | synthetic construct | E | protein | protein toc75, chloroplastic | pisum sativum | 59 | 24 | 0.83 | HL | train |
8adz_H_L | 8adz | cryo-em structure of full-length human immunoglobulin m - f(ab')2 conformation 2 | no | immune system | 2022-07-12 | 2022-10-26 | electron microscopy | 6.7 | N.A. | N.A. | 36274064 | 10.1038/s41467-022-34090-2 | 0 | auth_asym_id | FabH:FabL | IGHV2 | IGKV3 | H | L | QVTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSSGSASAPTLFPLVSCENSSPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKDVPLPVVI | EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSSGSASAPTLFPLVSCENSSPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKDVPLPVVI | EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 24.049063 | 22.911173 | 226 | 215 | 225 | 215 | 225 | 215 | 106 | igm fab, heavy chain | igm fab, light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
8adz_U_V | 8adz | cryo-em structure of full-length human immunoglobulin m - f(ab')2 conformation 2 | no | immune system | 2022-07-12 | 2022-10-26 | electron microscopy | 6.7 | N.A. | N.A. | 36274064 | 10.1038/s41467-022-34090-2 | 0 | auth_asym_id | FabH:FabL | IGHV2 | IGKV3 | U | V | QVTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSSGSASAPTLFPLVSCENSSPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKDVPLPVVI | EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSSGSASAPTLFPLVSCENSSPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKDVPLPVVI | EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.976486 | 22.904926 | 226 | 215 | 225 | 215 | 225 | 215 | 104 | igm fab, heavy chain | igm fab, light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
8ae2_H_L | 8ae2 | cryo-em structure of full-length human immunoglobulin m - f(ab')2 conformation 5 | no | immune system | 2022-07-12 | 2022-10-26 | electron microscopy | 8.5 | N.A. | N.A. | 36274064 | 10.1038/s41467-022-34090-2 | 0 | auth_asym_id | FabH:FabL | IGHV2 | IGKV3 | H | L | QVTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSSGSASAPTLFPLVSCENSSPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKDVPLPVVI | EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSSGSASAPTLFPLVSCENSSPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKDVPLPVVI | EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 24.001844 | 22.90261 | 226 | 215 | 225 | 215 | 225 | 215 | 101 | igm fab, heavy chain | igm fab, light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
8ae2_Q_S | 8ae2 | cryo-em structure of full-length human immunoglobulin m - f(ab')2 conformation 5 | no | immune system | 2022-07-12 | 2022-10-26 | electron microscopy | 8.5 | N.A. | N.A. | 36274064 | 10.1038/s41467-022-34090-2 | 0 | auth_asym_id | FabH:FabL | IGHV2 | IGKV3 | Q | S | QVTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSSGSASAPTLFPLVSCENSSPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKDVPLPVVI | EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSSGSASAPTLFPLVSCENSSPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDEHVVCKVQHPNGNKEKDVPLPVVI | EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.980572 | 22.893023 | 226 | 215 | 225 | 215 | 225 | 215 | 106 | igm fab, heavy chain | igm fab, light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7yh7_V_U | 7yh7 | sars-cov-2 spike in complex with neutralizing antibody niv-8 (state 2) | yes | viral protein/immune system | 2022-07-13 | 2023-07-19 | electron microscopy | 3.3 | N.A. | N.A. | 37452031 | 10.1038/s41467-023-39890-8 | 0 | auth_asym_id | VH:VL | IGHV3 | IGLV1 | V | U | EVQLVESGGGVVQPGRSLRLSCAASGFKFSKFAMHWVRQAPGKGPEWVAVISYDGNQYHSADSVKGRFTISRDNSFNTLYLQMNSLGPEDTAVYYCARDGPDTSGYYANIYFDFWGQGTLVTVSS | QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGRAPKLLIFDNNNRPSGVPDRFSGSKSGTSASLAITGLQTEDEAYYYCQSYDNSLILAVFGGGTKVTVL | EVQLVESGGGVVQPGRSLRLSCAASGFKFSKFAMHWVRQAPGKGPEWVAVISYDGNQYHSADSVKGRFTISRDNSFNTLYLQMNSLGPEDTAVYYCARDGPDTSGYYANIYFDFWGQGTLVTVSS | QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGRAPKLLIFDNNNRPSGVPDRFSGSKSGTSASLAITGLQTEDEAYYYCQSYDNSLILAVFGGGTKVTVL | 14.673329 | 13.651161 | 125 | 111 | 125 | 111 | 125 | 111 | 48 | niv-8 fab heavy chain | niv-8 fab light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 41 | 17 | 0.85 | HL | train |
7yh7_P_Q | 7yh7 | sars-cov-2 spike in complex with neutralizing antibody niv-8 (state 2) | yes | viral protein/immune system | 2022-07-13 | 2023-07-19 | electron microscopy | 3.3 | N.A. | N.A. | 37452031 | 10.1038/s41467-023-39890-8 | 0 | auth_asym_id | VH:VL | IGHV3 | IGLV1 | P | Q | EVQLVESGGGVVQPGRSLRLSCAASGFKFSKFAMHWVRQAPGKGPEWVAVISYDGNQYHSADSVKGRFTISRDNSFNTLYLQMNSLGPEDTAVYYCARDGPDTSGYYANIYFDFWGQGTLVTVSS | QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGRAPKLLIFDNNNRPSGVPDRFSGSKSGTSASLAITGLQTEDEAYYYCQSYDNSLILAVFGGGTKVTVL | EVQLVESGGGVVQPGRSLRLSCAASGFKFSKFAMHWVRQAPGKGPEWVAVISYDGNQYHSADSVKGRFTISRDNSFNTLYLQMNSLGPEDTAVYYCARDGPDTSGYYANIYFDFWGQGTLVTVSS | QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGRAPKLLIFDNNNRPSGVPDRFSGSKSGTSASLAITGLQTEDEAYYYCQSYDNSLILAVFGGGTKVTVL | 14.674781 | 13.601569 | 125 | 111 | 125 | 111 | 125 | 111 | 52 | niv-8 fab heavy chain | niv-8 fab light chain | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 39 | 16 | 0.84 | HL | train |
7yh7_S_R | 7yh7 | sars-cov-2 spike in complex with neutralizing antibody niv-8 (state 2) | yes | viral protein/immune system | 2022-07-13 | 2023-07-19 | electron microscopy | 3.3 | N.A. | N.A. | 37452031 | 10.1038/s41467-023-39890-8 | 0 | auth_asym_id | VH:VL | IGHV3 | IGLV1 | S | R | EVQLVESGGGVVQPGRSLRLSCAASGFKFSKFAMHWVRQAPGKGPEWVAVISYDGNQYHSADSVKGRFTISRDNSFNTLYLQMNSLGPEDTAVYYCARDGPDTSGYYANIYFDFWGQGTLVTVSS | QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGRAPKLLIFDNNNRPSGVPDRFSGSKSGTSASLAITGLQTEDEAYYYCQSYDNSLILAVFGGGTKVTVL | EVQLVESGGGVVQPGRSLRLSCAASGFKFSKFAMHWVRQAPGKGPEWVAVISYDGNQYHSADSVKGRFTISRDNSFNTLYLQMNSLGPEDTAVYYCARDGPDTSGYYANIYFDFWGQGTLVTVSS | QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGRAPKLLIFDNNNRPSGVPDRFSGSKSGTSASLAITGLQTEDEAYYYCQSYDNSLILAVFGGGTKVTVL | 14.675392 | 13.668958 | 125 | 111 | 125 | 111 | 125 | 111 | 49 | niv-8 fab heavy chain | niv-8 fab light chain | homo sapiens | homo sapiens | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 39 | 17 | 0.85 | HL | train |
8dok_M_N | 8dok | cryo-em structure of t/f100 sosip.664 hiv-1 env trimer in complex with 8anc195 and 10-1074 | no | viral protein/immune system | 2022-07-13 | 2023-07-19 | electron microscopy | 3.2 | N.A. | N.A. | 37872202 | 10.1038/s41467-023-42500-2 | 0 | auth_asym_id | VH:VL | IGHV4 | IGLV3 | M | N | QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | SYVRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVS | VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLG | 15.907778 | 13.686701 | 238 | 214 | 131 | 107 | 131 | 107 | 51 | heavy chain of 10-1074 | light chain of 10-1074 | homo sapiens | homo sapiens | A | protein | crf-1_ae t/f100 env gp120 | human immunodeficiency virus 1 | 25 | 11 | 0.92 | HL | train |
8dok_C_D | 8dok | cryo-em structure of t/f100 sosip.664 hiv-1 env trimer in complex with 8anc195 and 10-1074 | no | viral protein/immune system | 2022-07-13 | 2023-07-19 | electron microscopy | 3.2 | N.A. | N.A. | 37872202 | 10.1038/s41467-023-42500-2 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | C | D | QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISV | DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEV | 14.584188 | 13.071056 | 238 | 215 | 130 | 107 | 130 | 107 | 47 | heavy chain of 8anc195 | light chain of 8anc195 | homo sapiens | homo sapiens | A;B | protein;protein | crf-1_ae t/f100 env gp120;crf-1_ae t/f100 hiv-1 gp41 | human immunodeficiency virus 1;human immunodeficiency virus 1 | 42;26 | 11;11 | 0.65;0.92 | HL | train |
8dok_O_P | 8dok | cryo-em structure of t/f100 sosip.664 hiv-1 env trimer in complex with 8anc195 and 10-1074 | no | viral protein/immune system | 2022-07-13 | 2023-07-19 | electron microscopy | 3.2 | N.A. | N.A. | 37872202 | 10.1038/s41467-023-42500-2 | 0 | auth_asym_id | VH:VL | IGHV4 | IGLV3 | O | P | QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | SYVRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVS | VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLG | 15.920994 | 13.76141 | 238 | 214 | 131 | 107 | 131 | 107 | 51 | heavy chain of 10-1074 | light chain of 10-1074 | homo sapiens | homo sapiens | E | protein | crf-1_ae t/f100 env gp120 | human immunodeficiency virus 1 | 26 | 11 | 0.92 | HL | train |
8dok_G_H | 8dok | cryo-em structure of t/f100 sosip.664 hiv-1 env trimer in complex with 8anc195 and 10-1074 | no | viral protein/immune system | 2022-07-13 | 2023-07-19 | electron microscopy | 3.2 | N.A. | N.A. | 37872202 | 10.1038/s41467-023-42500-2 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | G | H | QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISV | DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVK | 14.544655 | 13.286926 | 238 | 215 | 130 | 108 | 130 | 108 | 49 | heavy chain of 8anc195 | light chain of 8anc195 | homo sapiens | homo sapiens | E;F | protein;protein | crf-1_ae t/f100 env gp120;crf-1_ae t/f100 hiv-1 gp41 | human immunodeficiency virus 1;human immunodeficiency virus 1 | 42;27 | 11;12 | 0.65;0.92 | HL | train |
8dok_Q_R | 8dok | cryo-em structure of t/f100 sosip.664 hiv-1 env trimer in complex with 8anc195 and 10-1074 | no | viral protein/immune system | 2022-07-13 | 2023-07-19 | electron microscopy | 3.2 | N.A. | N.A. | 37872202 | 10.1038/s41467-023-42500-2 | 0 | auth_asym_id | VH:VL | IGHV4 | IGLV3 | Q | R | QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | SYVRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVS | VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLG | 15.853771 | 13.719387 | 238 | 214 | 131 | 107 | 131 | 107 | 52 | heavy chain of 10-1074 | light chain of 10-1074 | homo sapiens | homo sapiens | I | protein | crf-1_ae t/f100 env gp120 | human immunodeficiency virus 1 | 23 | 11 | 0.92 | HL | train |
8dok_K_L | 8dok | cryo-em structure of t/f100 sosip.664 hiv-1 env trimer in complex with 8anc195 and 10-1074 | no | viral protein/immune system | 2022-07-13 | 2023-07-19 | electron microscopy | 3.2 | N.A. | N.A. | 37872202 | 10.1038/s41467-023-42500-2 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | K | L | QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT | DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QIHLVQSGTEVKKPGSSVTVSCKAYGVNTFGLYAVNWVRQAPGQSLEYIGQIWRWKSSASHHFRGRVLISAVDLTGSSPPISSLEIKNLTSDDTAVYFCTTTSTYDRWSGLHHDGVMAFSSWGQGTLISV | DIQMTQSPSTLSASTGDTVRISCRASQSITGNWVAWYQQRPGKAPRLLIYRGAALLGGVPSRFRGSAAGTDFTLTIGNLQAEDFGTFYCQQYDTYPGTFGQGTKVEVK | 14.559142 | 13.212032 | 238 | 215 | 130 | 108 | 130 | 108 | 50 | heavy chain of 8anc195 | light chain of 8anc195 | homo sapiens | homo sapiens | I;J | protein;protein | crf-1_ae t/f100 env gp120;crf-1_ae t/f100 hiv-1 gp41 | human immunodeficiency virus 1;human immunodeficiency virus 1 | 42;25 | 11;11 | 0.65;1.0 | HL | train |
8dp3_H_L | 8dp3 | crystal structure of coxsackievirus b3 cloverleaf rna replication element | no | immune system/rna | 2022-07-14 | 2023-04-19 | x-ray diffraction | 1.91 | 0.259 | 0.209 | 37029118 | 10.1038/s41467-023-37658-8 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | MKKNIAFLLASMFVFSIATNAYAEISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT | MKKNIAFLLASMFVFSIATNAYASDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSADSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | SEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSADSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 21.466978 | 23.420176 | 256 | 238 | 226 | 215 | 226 | 215 | 111 | fab bl3-6 heavy chain | fab bl3-6 light chain | synthetic construct | synthetic construct | R | RNA | rna (90-mer) | coxsackievirus b3 | 30 | 19 | 0.9 | HL | train |
8doz_A_B | 8doz | protective antibody against gonococcal lipooligosaccharide | no | immune system | 2022-07-14 | 2023-06-21 | x-ray diffraction | 1.7 | 0.216 | 0.177 | 39055159 | 10.1021/jacsau.4c00359 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGLV7 | A | B | EVQLQQSGPELVKPGSSVKISCKGSGYTFTDYNMEWVKQSHGKSLEWIGVINPNNRFTSYNQNFRGKATLTVDKSSSTAYMDLRSLTSEDSAVYFCAGSRWYQYDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHAPSNTKVDKKVEPKSCD | QVVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGINNRAPGVPARFSGSLIADKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | EVQLQQSGPELVKPGSSVKISCKGSGYTFTDYNMEWVKQSHGKSLEWIGVINPNNRFTSYNQNFRGKATLTVDKSSSTAYMDLRSLTSEDSAVYFCAGSRWYQYDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHAPSNTKVDKKVEP | VVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGINNRAPGVPARFSGSLIADKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT | 22.325575 | 22.751892 | 221 | 215 | 211 | 211 | 217 | 211 | 94 | fab 2c7, heavy chain fd fragment | fab 2c7 lambda light chain | mus musculus | mus musculus | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
8doz_C_D | 8doz | protective antibody against gonococcal lipooligosaccharide | no | immune system | 2022-07-14 | 2023-06-21 | x-ray diffraction | 1.7 | 0.216 | 0.177 | 39055159 | 10.1021/jacsau.4c00359 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGLV7 | C | D | EVQLQQSGPELVKPGSSVKISCKGSGYTFTDYNMEWVKQSHGKSLEWIGVINPNNRFTSYNQNFRGKATLTVDKSSSTAYMDLRSLTSEDSAVYFCAGSRWYQYDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHAPSNTKVDKKVEPKSCD | QVVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGINNRAPGVPARFSGSLIADKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | VQLQQSGPELVKPGSSVKISCKGSGYTFTDYNMEWVKQSHGKSLEWIGVINPNNRFTSYNQNFRGKATLTVDKSSSTAYMDLRSLTSEDSAVYFCAGSRWYQYDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHAPSNTKVDKKVEP | QVVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGINNRAPGVPARFSGSLIADKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT | 21.999979 | 22.267445 | 221 | 215 | 205 | 212 | 216 | 212 | 88 | fab 2c7, heavy chain fd fragment | fab 2c7 lambda light chain | mus musculus | mus musculus | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
8dp0_B | 8dp0 | structure of p110 gamma bound to the ras inhibitory nanobody nb7 | no | transferase/immune system | 2022-07-14 | 2023-07-19 | electron microscopy | 2.96 | N.A. | N.A. | 37417733 | 10.7554/eLife.88058 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QVQLVESGGGLVQPGGSLRLSCAASGSIFSINAMGWYRQAPGKQRELVAHITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNEAGDPFLGSTWNGPPAFGSWGQGTQVTVSSHHHHHHEPEA | N.A. | QVQLVESGGGLVQPGGSLRLSCAASGSIFSINAMGWYRQAPGKQRELVAHITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNEAGDPFLGSTWNGPPAFGSWGQGTQVTVS | N.A. | 13.364751 | 0 | 136 | 0 | 125 | 0 | 125 | 0 | 0 | nanobody nb7 | N.A. | lama glama | N.A. | A | protein | phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | homo sapiens | 66 | 22 | 0.73 | H_only | train |
8dp1_E_F | 8dp1 | cryo-em structure of hiv-1 env(bg505.t332n sosip) in complex with dh1030.1 fab | yes | viral protein/immune system | 2022-07-14 | 2023-07-19 | electron microscopy | 3.46 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV2 | E | F | EVQLAESGGGLTKPGGSLRLSCAASGFTFSDFYMDWVRQTPGKGLEWVSRINNDGRNKWYADSVRGRFTVSRENAKNTLYLQMDSLRAEDTAVYYCARDRPVYRYWSGGYHLDPWGQGVVVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGG | YVVMTQSPLSLPITPGQPASISCRSSQRLLHSDGNTYLAWYQQRPGQPPRRLIYEVSKLDSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCGQNTYLPYSFGQGSKVEIKRAVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRGEC | EVQLAESGGGLTKPGGSLRLSCAASGFTFSDFYMDWVRQTPGKGLEWVSRINNDGRNKWYADSVRGRFTVSRENAKNTLYLQMDSLRAEDTAVYYCARDRPVYRYWSGGYHLDPWGQGVVVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEI | YVVMTQSPLSLPITPGQPASISCRSSQRLLHSDGNTYLAWYQQRPGQPPRRLIYEVSKLDSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCGQNTYLPYSFGQGSKVEIKRAVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRG | 23.834345 | 23.151716 | 230 | 219 | 225 | 217 | 225 | 217 | 96 | dh1030.1 fab heavy chain | dh1030.1 fab light chain | macaca mulatta | macaca mulatta | B | protein | envelope glycoprotein gp120 | human immunodeficiency virus 1 | 33 | 12 | 0.92 | HL | train |
8dp1_N_O | 8dp1 | cryo-em structure of hiv-1 env(bg505.t332n sosip) in complex with dh1030.1 fab | yes | viral protein/immune system | 2022-07-14 | 2023-07-19 | electron microscopy | 3.46 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV2 | N | O | EVQLAESGGGLTKPGGSLRLSCAASGFTFSDFYMDWVRQTPGKGLEWVSRINNDGRNKWYADSVRGRFTVSRENAKNTLYLQMDSLRAEDTAVYYCARDRPVYRYWSGGYHLDPWGQGVVVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGG | YVVMTQSPLSLPITPGQPASISCRSSQRLLHSDGNTYLAWYQQRPGQPPRRLIYEVSKLDSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCGQNTYLPYSFGQGSKVEIKRAVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRGEC | EVQLAESGGGLTKPGGSLRLSCAASGFTFSDFYMDWVRQTPGKGLEWVSRINNDGRNKWYADSVRGRFTVSRENAKNTLYLQMDSLRAEDTAVYYCARDRPVYRYWSGGYHLDPWGQGVVVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEI | YVVMTQSPLSLPITPGQPASISCRSSQRLLHSDGNTYLAWYQQRPGQPPRRLIYEVSKLDSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCGQNTYLPYSFGQGSKVEIKRAVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRG | 23.77078 | 23.207762 | 230 | 219 | 225 | 217 | 225 | 217 | 92 | dh1030.1 fab heavy chain | dh1030.1 fab light chain | macaca mulatta | macaca mulatta | J | protein | envelope glycoprotein gp120 | human immunodeficiency virus 1 | 31 | 11 | 0.92 | HL | train |
8dp1_R_M | 8dp1 | cryo-em structure of hiv-1 env(bg505.t332n sosip) in complex with dh1030.1 fab | yes | viral protein/immune system | 2022-07-14 | 2023-07-19 | electron microscopy | 3.46 | N.A. | N.A. | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV2 | R | M | EVQLAESGGGLTKPGGSLRLSCAASGFTFSDFYMDWVRQTPGKGLEWVSRINNDGRNKWYADSVRGRFTVSRENAKNTLYLQMDSLRAEDTAVYYCARDRPVYRYWSGGYHLDPWGQGVVVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGG | YVVMTQSPLSLPITPGQPASISCRSSQRLLHSDGNTYLAWYQQRPGQPPRRLIYEVSKLDSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCGQNTYLPYSFGQGSKVEIKRAVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRGEC | EVQLAESGGGLTKPGGSLRLSCAASGFTFSDFYMDWVRQTPGKGLEWVSRINNDGRNKWYADSVRGRFTVSRENAKNTLYLQMDSLRAEDTAVYYCARDRPVYRYWSGGYHLDPWGQGVVVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEI | YVVMTQSPLSLPITPGQPASISCRSSQRLLHSDGNTYLAWYQQRPGQPPRRLIYEVSKLDSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCGQNTYLPYSFGQGSKVEIKRAVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRG | 23.779566 | 23.224255 | 230 | 219 | 225 | 217 | 225 | 217 | 96 | dh1030.1 fab heavy chain | dh1030.1 fab light chain | macaca mulatta | macaca mulatta | W | protein | envelope glycoprotein gp120 | human immunodeficiency virus 1 | 31 | 12 | 0.92 | HL | train |
8dpf_E | 8dpf | cryo-em structure of the 5ht2c receptor (ini isoform) bound to lorcaserin | yes | membrane protein | 2022-07-15 | 2022-08-24 | electron microscopy | 2.84 | N.A. | N.A. | 35977511 | 10.1016/j.celrep.2022.111211 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAALEVLFQGPHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.755083 | 0 | 267 | 0 | 230 | 0 | 246 | 0 | 0 | antibody fragment scfv16 | N.A. | homo sapiens | N.A. | B;C | protein;protein | g-alpha subunit q (gi2-mini-gq chimeric);guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 30;18 | 19;6 | 0.95;0.75 | H_only | train |
8dpg_E | 8dpg | cryo-em structure of the 5ht2c receptor (ini isoform) bound to psilocin | yes | membrane protein | 2022-07-15 | 2022-08-24 | electron microscopy | 3.6 | N.A. | N.A. | 35977511 | 10.1016/j.celrep.2022.111211 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAALEVLFQGPHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.756989 | 0 | 267 | 0 | 230 | 0 | 246 | 0 | 0 | antibody fragment scfv16 | N.A. | homo sapiens | N.A. | C;B | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;g-alpha subunit q (gi2-mini-gq chimera) | homo sapiens;homo sapiens | 15;28 | 6;18 | 0.75;1.0 | H_only | train |
8dph_E | 8dph | cryo-em structure of the 5ht2c receptor (vgv isoform) bound to lorcaserin | yes | membrane protein | 2022-07-15 | 2022-08-24 | electron microscopy | 3.2 | N.A. | N.A. | 35977511 | 10.1016/j.celrep.2022.111211 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAALEVLFQGPHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.755568 | 0 | 267 | 0 | 230 | 0 | 246 | 0 | 0 | antibody fragment scfv16 | N.A. | homo sapiens | N.A. | C;B | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;g-alpha subunit q (gi2-mini-gq chimeric) | homo sapiens;homo sapiens | 18;28 | 7;18 | 0.78;1.0 | H_only | train |
8dpi_E | 8dpi | cryo-em structure of the 5ht2c receptor (vsv isoform) bound to lorcaserin | yes | membrane protein | 2022-07-15 | 2022-08-24 | electron microscopy | 3.4 | N.A. | N.A. | 35977511 | 10.1016/j.celrep.2022.111211 | 0 | auth_asym_id | scFv | N.A. | N.A. | E | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAALEVLFQGPHHHHHHHH | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.73286 | 0 | 267 | 0 | 230 | 0 | 246 | 0 | 0 | antibody fragment scfv16 | N.A. | homo sapiens | N.A. | B;C | protein;protein | g-alpha subunit q (gi2-mini-gq chimera);guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 27;20 | 17;7 | 1.0;0.7 | H_only | train |
8dpm_D_E | 8dpm | structure of ebov gp lacking the mucin-like domain with 9.20.1a2 fab and 6d6 scfv bound | no | viral protein/immune system | 2022-07-15 | 2023-07-19 | electron microscopy | 3 | N.A. | N.A. | 37938974 | 10.1016/j.celrep.2023.113366 | 0 | auth_asym_id | VH:VL | IGHV3 | IGLV1 | D | E | EVQLVESGGDLVQPGGSLRLSCAASGITLSGVWMNWVRQAPGKGLEWIGRIKSTSDGGRADFAAPARGRFTMSRDESKNKLFLQMNNLGIEDTGMYYCFTRVQRDGTKDDFWGRGTLVTVSS | QSVLTQPPSVSGAPGQTVTISCTGSYSNIGAGYDVQWYQHLPGTAPKLLIYDNVHRPSGVPDRFSGSKSGTSASLAITGLQTEDEADYYCQSYDSRLRDQWVFGGGTKLTVL | VQLVESGGDLVQPGGSLRLSCAASGITLSGVWMNWVRQAPGKGLEWIGRIKSTSDGGRADFAAPARGRFTMSRDESKNKLFLQMNNLGIEDTGMYYCFTRVQRDGTKDDFWGRGTLVTV | VLTQPPSVSGAPGQTVTISCTGSYSNIGAGYDVQWYQHLPGTAPKLLIYDNVHRPSGVPDRFSGSKSGTSASLAITGLQTEDEADYYCQSYDSRLRDQWVFGGGTKLTVL | 13.797545 | 13.494192 | 122 | 112 | 119 | 110 | 119 | 110 | 44 | antibody 9.20.1a2 fab heavy chain | antibody 9.20.1a2 fab light chain | homo sapiens | homo sapiens | A | protein | glycoprotein gp1 | ebola virus - mayinga, zaire, 1976 | 49 | 20 | 0.8 | HL | train |
8dpm_C | 8dpm | structure of ebov gp lacking the mucin-like domain with 9.20.1a2 fab and 6d6 scfv bound | no | viral protein/immune system | 2022-07-15 | 2023-07-19 | electron microscopy | 3 | N.A. | N.A. | 37938974 | 10.1016/j.celrep.2023.113366 | 0 | auth_asym_id | scFv | N.A. | N.A. | C | N.A. | QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL | N.A. | QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL | N.A. | 17.017614 | 0 | 243 | 0 | 221 | 0 | 243 | 0 | 0 | antibody 6d6 scfv | N.A. | mus musculus | N.A. | A;B;L | protein;protein;protein | glycoprotein gp1;glycoprotein gp2;glycoprotein gp2 | ebola virus - mayinga, zaire, 1976;ebola virus - mayinga, zaire, 1976;ebola virus - mayinga, zaire, 1976 | 15;15;36 | 8;6;18 | 0.89;0.86;0.86 | H_only | train |
8dpm_I_J | 8dpm | structure of ebov gp lacking the mucin-like domain with 9.20.1a2 fab and 6d6 scfv bound | no | viral protein/immune system | 2022-07-15 | 2023-07-19 | electron microscopy | 3 | N.A. | N.A. | 37938974 | 10.1016/j.celrep.2023.113366 | 0 | auth_asym_id | VH:VL | IGHV3 | IGLV1 | I | J | EVQLVESGGDLVQPGGSLRLSCAASGITLSGVWMNWVRQAPGKGLEWIGRIKSTSDGGRADFAAPARGRFTMSRDESKNKLFLQMNNLGIEDTGMYYCFTRVQRDGTKDDFWGRGTLVTVSS | QSVLTQPPSVSGAPGQTVTISCTGSYSNIGAGYDVQWYQHLPGTAPKLLIYDNVHRPSGVPDRFSGSKSGTSASLAITGLQTEDEADYYCQSYDSRLRDQWVFGGGTKLTVL | VQLVESGGDLVQPGGSLRLSCAASGITLSGVWMNWVRQAPGKGLEWIGRIKSTSDGGRADFAAPARGRFTMSRDESKNKLFLQMNNLGIEDTGMYYCFTRVQRDGTKDDFWGRGTLVTV | VLTQPPSVSGAPGQTVTISCTGSYSNIGAGYDVQWYQHLPGTAPKLLIYDNVHRPSGVPDRFSGSKSGTSASLAITGLQTEDEADYYCQSYDSRLRDQWVFGGGTKLTVL | 13.799856 | 13.493354 | 122 | 112 | 119 | 110 | 119 | 110 | 47 | antibody 9.20.1a2 fab heavy chain | antibody 9.20.1a2 fab light chain | homo sapiens | homo sapiens | F | protein | glycoprotein gp1 | ebola virus - mayinga, zaire, 1976 | 48 | 19 | 0.79 | HL | train |
8dpm_H | 8dpm | structure of ebov gp lacking the mucin-like domain with 9.20.1a2 fab and 6d6 scfv bound | no | viral protein/immune system | 2022-07-15 | 2023-07-19 | electron microscopy | 3 | N.A. | N.A. | 37938974 | 10.1016/j.celrep.2023.113366 | 0 | auth_asym_id | scFv | N.A. | N.A. | H | N.A. | QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL | N.A. | QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL | N.A. | 17.018427 | 0 | 243 | 0 | 221 | 0 | 243 | 0 | 0 | antibody 6d6 scfv | N.A. | mus musculus | N.A. | F;B;G | protein;protein;protein | glycoprotein gp1;glycoprotein gp2;glycoprotein gp2 | ebola virus - mayinga, zaire, 1976;ebola virus - mayinga, zaire, 1976;ebola virus - mayinga, zaire, 1976 | 15;36;18 | 8;18;8 | 0.89;0.86;0.89 | H_only | train |
8dpm_N_O | 8dpm | structure of ebov gp lacking the mucin-like domain with 9.20.1a2 fab and 6d6 scfv bound | no | viral protein/immune system | 2022-07-15 | 2023-07-19 | electron microscopy | 3 | N.A. | N.A. | 37938974 | 10.1016/j.celrep.2023.113366 | 0 | auth_asym_id | VH:VL | IGHV3 | IGLV1 | N | O | EVQLVESGGDLVQPGGSLRLSCAASGITLSGVWMNWVRQAPGKGLEWIGRIKSTSDGGRADFAAPARGRFTMSRDESKNKLFLQMNNLGIEDTGMYYCFTRVQRDGTKDDFWGRGTLVTVSS | QSVLTQPPSVSGAPGQTVTISCTGSYSNIGAGYDVQWYQHLPGTAPKLLIYDNVHRPSGVPDRFSGSKSGTSASLAITGLQTEDEADYYCQSYDSRLRDQWVFGGGTKLTVL | VQLVESGGDLVQPGGSLRLSCAASGITLSGVWMNWVRQAPGKGLEWIGRIKSTSDGGRADFAAPARGRFTMSRDESKNKLFLQMNNLGIEDTGMYYCFTRVQRDGTKDDFWGRGTLVTV | VLTQPPSVSGAPGQTVTISCTGSYSNIGAGYDVQWYQHLPGTAPKLLIYDNVHRPSGVPDRFSGSKSGTSASLAITGLQTEDEADYYCQSYDSRLRDQWVFGGGTKLTVL | 13.796951 | 13.493406 | 122 | 112 | 119 | 110 | 119 | 110 | 48 | antibody 9.20.1a2 fab heavy chain | antibody 9.20.1a2 fab light chain | homo sapiens | homo sapiens | K | protein | glycoprotein gp1 | ebola virus - mayinga, zaire, 1976 | 47 | 19 | 0.79 | HL | train |
8dpm_M | 8dpm | structure of ebov gp lacking the mucin-like domain with 9.20.1a2 fab and 6d6 scfv bound | no | viral protein/immune system | 2022-07-15 | 2023-07-19 | electron microscopy | 3 | N.A. | N.A. | 37938974 | 10.1016/j.celrep.2023.113366 | 0 | auth_asym_id | scFv | N.A. | N.A. | M | N.A. | QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL | N.A. | QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL | N.A. | 17.01762 | 0 | 243 | 0 | 221 | 0 | 243 | 0 | 0 | antibody 6d6 scfv | N.A. | mus musculus | N.A. | K;G;L | protein;protein;protein | glycoprotein gp1;glycoprotein gp2;glycoprotein gp2 | ebola virus - mayinga, zaire, 1976;ebola virus - mayinga, zaire, 1976;ebola virus - mayinga, zaire, 1976 | 15;36;18 | 8;18;8 | 0.89;0.86;0.89 | H_only | train |
7yi6_D_B | 7yi6 | bnab 3d1 in complex with 6-mer hr1 peptide from hcov-229e s protein | no | antiviral protein/immune system | 2022-07-15 | 2023-08-30 | x-ray diffraction | 2.28 | 0.22 | 0.193 | 40813592 | 10.1038/s41467-025-63101-1 | 0 | auth_asym_id | FabH:FabL | IGHV7 | IGLV2 | D | B | QVQLVQSGSELKKPGASVRISCKASGYSFTSLSMNWVRQAPGQGLEWMGWISTKSGDPTYAQAFTGRFVFSLDTSVNTAYLQINSLEAGDTAVYYCARGQPPVGWTFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPP | ALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLIIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYTSSSTLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | VQLVQSGSELKKPGASVRISCKASGYSFTSLSMNWVRQAPGQGLEWMGWISTKSGDPTYAQAFTGRFVFSLDTSVNTAYLQINSLEAGDTAVYYCARGQPPVGWTFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPP | ALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLIIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYTSSSTLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP | 21.014885 | 23.925806 | 221 | 214 | 220 | 210 | 220 | 210 | 91 | heavy chain of 3d1 | light chain of 3d1 | homo sapiens | homo sapiens | A | peptide | spike glycoprotein | human coronavirus 229e | 23 | 14 | 0.82 | HL | train |
7yi6_F_E | 7yi6 | bnab 3d1 in complex with 6-mer hr1 peptide from hcov-229e s protein | no | antiviral protein/immune system | 2022-07-15 | 2023-08-30 | x-ray diffraction | 2.28 | 0.22 | 0.193 | 40813592 | 10.1038/s41467-025-63101-1 | 0 | auth_asym_id | FabH:FabL | IGHV7 | IGLV2 | F | E | QVQLVQSGSELKKPGASVRISCKASGYSFTSLSMNWVRQAPGQGLEWMGWISTKSGDPTYAQAFTGRFVFSLDTSVNTAYLQINSLEAGDTAVYYCARGQPPVGWTFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPP | ALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLIIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYTSSSTLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | VQLVQSGSELKKPGASVRISCKASGYSFTSLSMNWVRQAPGQGLEWMGWISTKSGDPTYAQAFTGRFVFSLDTSVNTAYLQINSLEAGDTAVYYCARGQPPVGWTFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | ALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLIIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYTSSSTLVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP | 20.0247 | 23.982962 | 221 | 214 | 214 | 210 | 219 | 210 | 88 | heavy chain of 3d1 | light chain of 3d1 | homo sapiens | homo sapiens | C | peptide | spike glycoprotein | human coronavirus 229e | 23 | 14 | 0.78 | HL | train |
8afe_C | 8afe | cryo-em structure of crescentin filaments (stutter mutant, c1 symmetry and small box) | no | structural protein | 2022-07-17 | 2023-08-16 | electron microscopy | 3.3 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | C | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.518668 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | A | protein | crescentin | caulobacter vibrioides | 18 | 8 | 0.73 | H_only | train |
8afe_D | 8afe | cryo-em structure of crescentin filaments (stutter mutant, c1 symmetry and small box) | no | structural protein | 2022-07-17 | 2023-08-16 | electron microscopy | 3.3 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | D | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.536233 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | B | protein | crescentin | caulobacter vibrioides | 19 | 7 | 0.64 | H_only | train |
8afe_I | 8afe | cryo-em structure of crescentin filaments (stutter mutant, c1 symmetry and small box) | no | structural protein | 2022-07-17 | 2023-08-16 | electron microscopy | 3.3 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | I | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | VQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGGS... | N.A. | 13.524983 | 0 | 907 | 0 | 111 | 0 | 886 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | G | peptide | crescentin | caulobacter vibrioides | 18 | 8 | 0.73 | H_only | train |
8afe_J | 8afe | cryo-em structure of crescentin filaments (stutter mutant, c1 symmetry and small box) | no | structural protein | 2022-07-17 | 2023-08-16 | electron microscopy | 3.3 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | J | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.545003 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | H | peptide | crescentin | caulobacter vibrioides | 20 | 7 | 0.58 | H_only | train |
7yit_D | 7yit | molecular mechanism of biased signaling at the kappa opioid receptor | yes | membrane protein/inhibitor/immune system | 2022-07-18 | 2023-04-12 | x-ray diffraction | 3.3 | 0.335 | 0.285 | 36906681 | 10.1038/s41467-023-37041-7 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | MAQVQLVESGGGLVRPGGSLRLSCVDSERTSYPMGWFRRAPGKEREFVASITWSGIDPTYADSVADRFTTSRDVANNTLYLQMNSLKHEDTAVYYCAARAPVGQSSSPYDYDYWGQGTQVTVS | N.A. | VQLVESGGGLVRPGGSLRLSCVDSERTSYPMGWFRRAPGKEREFVASITWSGIDPTYADSVADRFTTSRDVANNTLYLQMNSLKHEDTAVYYCAARAPVGQSSSPYDYDYWGQGTQVTVS | N.A. | 13.518702 | 0 | 123 | 0 | 109 | 0 | 120 | 0 | 0 | nanobody39 | N.A. | lama glama | N.A. | A | protein | kappa-type opioid receptor | homo sapiens | 55 | 7 | 0.27 | H_only | train |
7yiz_B_A | 7yiz | crystal structure of anti-mpeg h15-2b fab w104y mutant | no | immune system | 2022-07-18 | 2023-08-02 | x-ray diffraction | 2.42 | 0.27 | 0.216 | N.A. | 10.1021/acs.bioconjchem.2c00416 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | B | A | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYYGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTGGSHHHHHH | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYYGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 21.128275 | 23.412935 | 229 | 214 | 214 | 213 | 216 | 213 | 96 | 15-2b w104y heavy chain | 15-2b light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7yiz_D_C | 7yiz | crystal structure of anti-mpeg h15-2b fab w104y mutant | no | immune system | 2022-07-18 | 2023-08-02 | x-ray diffraction | 2.42 | 0.27 | 0.216 | N.A. | 10.1021/acs.bioconjchem.2c00416 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | D | C | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYYGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTGGSHHHHHH | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLKLSCAASGFTFSNYWMNWVRQASGKGLEWVGEIRSKSNNYATHYAESVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCSNRYYYGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVE | DIQMTQSPSSLSASVGDRVTITCKASQDVNTAVAWYQQKPGKAPKLLIYWASTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCLQYINYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 20.552301 | 23.225088 | 229 | 214 | 207 | 211 | 213 | 211 | 91 | 15-2b w104y heavy chain | 15-2b light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7yix_C | 7yix | the cryo-em structure of human tissue nonspecific alkaline phosphatase and single-chain fragment variable (scfv) complex. | no | hydrolase | 2022-07-18 | 2023-08-16 | electron microscopy | 2.96 | N.A. | N.A. | 37422472 | 10.1038/s41467-023-39833-3 | 0 | auth_asym_id | scFv | N.A. | N.A. | C | N.A. | MYRMQLLSCIALSLALVTNSAAQPAMAQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARDKGWNSEGSLEYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPSSVSASVGDRVTITCRASQGISNWLGWYQQKPGKAPKLLIYGASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQAYSLPLTFGGGTKLEIKRGAAA | N.A. | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARDKGWNSEGSLEYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPSSVSASVGDRVTITCRASQGISNWLGWYQQKPGKAPKLLIYGASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQAYSLPLTFGGGTKLEI | N.A. | 17.641113 | 0 | 275 | 0 | 225 | 0 | 242 | 0 | 0 | scfv | N.A. | homo sapiens | N.A. | A | protein | alkaline phosphatase, tissue-nonspecific isozyme | homo sapiens | 36 | 16 | 0.89 | H_only | train |
7yix_D | 7yix | the cryo-em structure of human tissue nonspecific alkaline phosphatase and single-chain fragment variable (scfv) complex. | no | hydrolase | 2022-07-18 | 2023-08-16 | electron microscopy | 2.96 | N.A. | N.A. | 37422472 | 10.1038/s41467-023-39833-3 | 0 | auth_asym_id | scFv | N.A. | N.A. | D | N.A. | MYRMQLLSCIALSLALVTNSAAQPAMAQVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARDKGWNSEGSLEYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPSSVSASVGDRVTITCRASQGISNWLGWYQQKPGKAPKLLIYGASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQAYSLPLTFGGGTKLEIKRGAAA | N.A. | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTNYAQKLQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCARDKGWNSEGSLEYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPSSVSASVGDRVTITCRASQGISNWLGWYQQKPGKAPKLLIYGASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQAYSLPLTFGGGTKLEI | N.A. | 17.691269 | 0 | 275 | 0 | 227 | 0 | 242 | 0 | 0 | scfv | N.A. | homo sapiens | N.A. | B | protein | alkaline phosphatase, tissue-nonspecific isozyme | homo sapiens | 33 | 15 | 1 | H_only | train |
8afl_C | 8afl | cryo-em structure of crescentin filaments (wildtype, c1 symmetry and small box) | no | structural protein | 2022-07-18 | 2023-08-16 | electron microscopy | 4.4 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | C | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.671741 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | A | protein | crescentin | caulobacter vibrioides | 16 | 6 | 0.67 | H_only | train |
8afl_D | 8afl | cryo-em structure of crescentin filaments (wildtype, c1 symmetry and small box) | no | structural protein | 2022-07-18 | 2023-08-16 | electron microscopy | 4.4 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | D | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 14.003708 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | B | protein | crescentin | caulobacter vibrioides | 21 | 8 | 0.67 | H_only | train |
8afm_C | 8afm | cryo-em structure of crescentin filaments (wildtype, c2 symmetry and small box) | no | structural protein | 2022-07-18 | 2023-08-16 | electron microscopy | 4.8 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | C | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.671752 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | A | protein | crescentin | caulobacter vibrioides | 16 | 6 | 0.67 | H_only | train |
8afm_D | 8afm | cryo-em structure of crescentin filaments (wildtype, c2 symmetry and small box) | no | structural protein | 2022-07-18 | 2023-08-16 | electron microscopy | 4.8 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | D | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 14.003695 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | B | protein | crescentin | caulobacter vibrioides | 21 | 8 | 0.67 | H_only | train |
8afm_I | 8afm | cryo-em structure of crescentin filaments (wildtype, c2 symmetry and small box) | no | structural protein | 2022-07-18 | 2023-08-16 | electron microscopy | 4.8 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | I | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.671759 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | G | protein | crescentin | caulobacter vibrioides | 16 | 6 | 0.67 | H_only | train |
8afm_J | 8afm | cryo-em structure of crescentin filaments (wildtype, c2 symmetry and small box) | no | structural protein | 2022-07-18 | 2023-08-16 | electron microscopy | 4.8 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | J | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 14.00384 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | H | protein | crescentin | caulobacter vibrioides | 21 | 8 | 0.67 | H_only | train |
7yj4_S | 7yj4 | cryo-em structure of the insl5-bound human relaxin family peptidereceptor 4 (rxfp4)-gi complex | yes | structural protein | 2022-07-19 | 2023-03-01 | electron microscopy | 3.19 | N.A. | N.A. | 36717591 | 10.1038/s41467-023-36182-z | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | MVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.491379 | 0 | 248 | 0 | 230 | 0 | 247 | 0 | 0 | scfv16 | N.A. | synthetic construct | N.A. | I;T | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-2;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 16;24 | 10;11 | 0.91;0.85 | H_only | train |
8ag1_H_L | 8ag1 | crystal structure of a novel ox40 antibody | no | immune system | 2022-07-19 | 2023-07-19 | x-ray diffraction | 3.3 | 0.268 | 0.194 | 36139048 | 10.3390/biom12091209 | 0 | auth_asym_id | FabH:FabL | IGHV6 | IGKV3 | H | L | QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSVSWDWIRQSPSRGLEWLGRTYYRSKWYNEYAVSVESRITINPDTSKNQFSLQLNSVTPEDTAIYFCVRNDYFFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHMDPGGSHHHHHHHH | EIVLTQSPATLSLSPGERATLSCRASQSVGSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPGYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSVSWDWIRQSPSRGLEWLGRTYYRSKWYNEYAVSVESRITINPDTSKNQFSLQLNSVTPEDTAIYFCVRNDYFFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | EIVLTQSPATLSLSPGERATLSCRASQSVGSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPGYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 23.080593 | 22.981853 | 240 | 216 | 218 | 215 | 220 | 215 | 93 | novel ox40 antibody heavy chain | novel ox40 antibody light chain | homo sapiens | homo sapiens | A | protein | tumor necrosis factor receptor superfamily member 4 | homo sapiens | 52 | 18 | 0.75 | HL | train |
8ag1_h_l | 8ag1 | crystal structure of a novel ox40 antibody | no | immune system | 2022-07-19 | 2023-07-19 | x-ray diffraction | 3.3 | 0.268 | 0.194 | 36139048 | 10.3390/biom12091209 | 0 | auth_asym_id | FabH:FabL | IGHV6 | IGKV3 | h | l | QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSVSWDWIRQSPSRGLEWLGRTYYRSKWYNEYAVSVESRITINPDTSKNQFSLQLNSVTPEDTAIYFCVRNDYFFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHMDPGGSHHHHHHHH | EIVLTQSPATLSLSPGERATLSCRASQSVGSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPGYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSVSWDWIRQSPSRGLEWLGRTYYRSKWYNEYAVSVESRITINPDTSKNQFSLQLNSVTPEDTAIYFCVRNDYFFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | EIVLTQSPATLSLSPGERATLSCRASQSVGSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPGYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 20.99595 | 23.580576 | 240 | 216 | 215 | 216 | 220 | 216 | 92 | novel ox40 antibody heavy chain | novel ox40 antibody light chain | homo sapiens | homo sapiens | a | protein | tumor necrosis factor receptor superfamily member 4 | homo sapiens | 49 | 19 | 0.73 | HL | train |
8dqu_A | 8dqu | nanobody bound sars-cov-2 nsp9 | no | viral protein | 2022-07-20 | 2023-02-08 | x-ray diffraction | 2.45 | 0.229 | 0.203 | 37036856 | 10.1371/journal.pone.0283194 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | A | N.A. | MQVQLQESGGGLVQPGGSLRLSCAASGLAFSMYTMGWFRQAPGKEREFVAMIISSGDSTDYADSVKGRFTISRDNGKNTVYLQMDSLKPEDTAVYYCAAPKFRYYFSTSPGDFDSWGQGTQVTVSSAAAYPYDVPDYGSHHHHHH | N.A. | MQVQLQESGGGLVQPGGSLRLSCAASGLAFSMYTMGWFRQAPGKEREFVAMIISSGDSTDYADSVKGRFTISRDNGKNTVYLQMDSLKPEDTAVYYCAAPKFRYYFSTSPGDFDSWGQGTQVTVSSA | N.A. | 13.774382 | 0 | 145 | 0 | 127 | 0 | 127 | 0 | 0 | nanobody | N.A. | lama glama | N.A. | C | protein | non-structural protein 9 | severe acute respiratory syndrome coronavirus 2 | 35 | 14 | 0.78 | H_only | train |
8dqu_B | 8dqu | nanobody bound sars-cov-2 nsp9 | no | viral protein | 2022-07-20 | 2023-02-08 | x-ray diffraction | 2.45 | 0.229 | 0.203 | 37036856 | 10.1371/journal.pone.0283194 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | MQVQLQESGGGLVQPGGSLRLSCAASGLAFSMYTMGWFRQAPGKEREFVAMIISSGDSTDYADSVKGRFTISRDNGKNTVYLQMDSLKPEDTAVYYCAAPKFRYYFSTSPGDFDSWGQGTQVTVSSAAAYPYDVPDYGSHHHHHH | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGLAFSMYTMGWFRQAPGKEREFVAMIISSGDSTDYADSVKGRFTISRDNGKNTVYLQMDSLKPEDTAVYYCAAPKFRYYFSTSPGDFDSWGQGTQVTVSSA | N.A. | 13.662461 | 0 | 145 | 0 | 126 | 0 | 126 | 0 | 0 | nanobody | N.A. | lama glama | N.A. | F | protein | non-structural protein 9 | severe acute respiratory syndrome coronavirus 2 | 37 | 15 | 0.79 | H_only | train |
7yk6_S | 7yk6 | cryo-em structure of the compound 4-bound human relaxin family peptide receptor 4 (rxfp4)-gi complex | yes | structural protein | 2022-07-21 | 2023-03-01 | electron microscopy | 3.03 | N.A. | N.A. | 36717591 | 10.1038/s41467-023-36182-z | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | MVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.417343 | 0 | 248 | 0 | 230 | 0 | 247 | 0 | 0 | scfv16 | N.A. | synthetic construct | N.A. | I;T | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-2;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 31;24 | 20;9 | 1.0;0.75 | H_only | train |
7yk7_S | 7yk7 | cryo-em structure of the dc591053-bound human relaxin family peptide receptor 4 (rxfp4)-gi complex | yes | structural protein | 2022-07-21 | 2023-03-01 | electron microscopy | 2.75 | N.A. | N.A. | 36717591 | 10.1038/s41467-023-36182-z | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | MVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.443352 | 0 | 248 | 0 | 230 | 0 | 247 | 0 | 0 | scfv16 | N.A. | synthetic construct | N.A. | I;T | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-2;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 31;22 | 19;9 | 0.95;0.82 | H_only | train |
7yk4_H_L | 7yk4 | ox40-antibody | no | antitumor protein/immune system | 2022-07-21 | 2023-08-09 | x-ray diffraction | 2.7 | 0.298 | 0.233 | 36139048 | 10.3390/biom12091209 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | H | L | EVQLVQSGAEVKKPGASVKVSCKASGYTFTDSYMSWVRQAPGQGLEWIGDMYPDNGDSSYNQKFRERVTITRDTSTSTAYLELSSLRSEDTAVYYCVLAPRWYFSVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHMDPGGSHHHHHHHH | DIQMTQSPSSLSASVGDRVTITCRASQDISNYLNWYQQKPGKAPKLLIYYTSRLRSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQGHTLPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VQLVQSGAEVKKPGASVKVSCKASGYTFTDSYMSWVRQAPGQGLEWIGDMYPDNGDSSYNQKFRERVTITRDTSTSTAYLELSSLRSEDTAVYYCVLAPRWYFSVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | DIQMTQSPSSLSASVGDRVTITCRASQDISNYLNWYQQKPGKAPKLLIYYTSRLRSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQGHTLPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG | 20.542355 | 23.49099 | 238 | 214 | 216 | 212 | 216 | 212 | 100 | antibody-h | antibody-l | homo sapiens | homo sapiens | A | protein | tumor necrosis factor receptor superfamily member 4 | homo sapiens | 44 | 18 | 0.75 | HL | train |
7yk4_I_M | 7yk4 | ox40-antibody | no | antitumor protein/immune system | 2022-07-21 | 2023-08-09 | x-ray diffraction | 2.7 | 0.298 | 0.233 | 36139048 | 10.3390/biom12091209 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | I | M | EVQLVQSGAEVKKPGASVKVSCKASGYTFTDSYMSWVRQAPGQGLEWIGDMYPDNGDSSYNQKFRERVTITRDTSTSTAYLELSSLRSEDTAVYYCVLAPRWYFSVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHMDPGGSHHHHHHHH | DIQMTQSPSSLSASVGDRVTITCRASQDISNYLNWYQQKPGKAPKLLIYYTSRLRSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQGHTLPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VQLVQSGAEVKKPGASVKVSCKASGYTFTDSYMSWVRQAPGQGLEWIGDMYPDNGDSSYNQKFRERVTITRDTSTSTAYLELSSLRSEDTAVYYCVLAPRWYFSVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSASVGDRVTITCRASQDISNYLNWYQQKPGKAPKLLIYYTSRLRSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQGHTLPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 20.86307 | 23.365654 | 238 | 214 | 216 | 211 | 217 | 211 | 104 | antibody-h | antibody-l | homo sapiens | homo sapiens | B | protein | tumor necrosis factor receptor superfamily member 4 | homo sapiens | 42 | 18 | 0.72 | HL | train |
8ds7_H_L | 8ds7 | tumor-activated antibody derivatives targeting ctla4 | no | antitumor protein | 2022-07-21 | 2024-02-07 | x-ray diffraction | 1.88 | 0.191 | 0.156 | N.A. | N.A. | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV2 | H | L | EVQLQQSGPVLVKPGASVKMSCKASGYTFTDYYMNWVKQSHGKSLEWIGVINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELNSLTSEDSAVYYCARYYGSWFAYWGQGTLITVSTAKTTPPSVYPLAPGCGDATGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEP | DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | EVQLQQSGPVLVKPGASVKMSCKASGYTFTDYYMNWVKQSHGKSLEWIGVINPYNGDTSYNQKFKGKATLTVDKSSSTAYMELNSLTSEDSAVYYCARYYGSWFAYWGQGTLITVSTAKTTPPSVYPLAPGCGDATGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEP | DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | 21.742983 | 23.769718 | 216 | 219 | 214 | 219 | 216 | 219 | 93 | igg heavy chain fab | igg light chain fab | mus musculus | mus musculus | M | peptide | acnliveghc peptide | phage 13 | 25 | 13 | 0.81 | HL | train |
7ykj_A_D | 7ykj | omicron rbds bound with p3e6 fab (one up and one down) | yes | viral protein/immune system | 2022-07-22 | 2022-12-28 | electron microscopy | 3.5 | N.A. | N.A. | 36354024 | 10.1080/22221751.2022.2146538 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV3 | A | D | EVQLLDSGGGLVQPGGSLRLSCAVSGFTFSNYAMNWVRQTPGKELEWVSAISGTGDDTHYADSVRGRFTISSDNSKNTVYLQMNSLRVEDTAIYYCAKAISRYPWGCLDYWGQGTLVTVSS | EIVLTQSPGTLSLSPGERATLSCRASQSVSNSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGTSPRLTFGGGTKVEIK | EVQLLDSGGGLVQPGGSLRLSCAVSGFTFSNYAMNWVRQTPGKELEWVSAISGTGDDTHYADSVRGRFTISSDNSKNTVYLQMNSLRVEDTAIYYCAKAISRYPWGCLDYWGQGTLVTVSS | EIVLTQSPGTLSLSPGERATLSCRASQSVSNSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGTSPRLTFGGGTKVEIK | 13.726162 | 13.459969 | 121 | 109 | 121 | 109 | 121 | 109 | 44 | p3e6 heavy chain | p3e6 light chain | homo sapiens | homo sapiens | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 40 | 16 | 0.8 | HL | train |
7ykd_S | 7ykd | cryo-em structure of the human chemerin receptor 1 complex with the c-terminal nonapeptide of chemerin | yes | peptide binding protein | 2022-07-22 | 2023-04-19 | electron microscopy | 2.81 | N.A. | N.A. | 36881626 | 10.1073/pnas.2214324120 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.237663 | 0 | 247 | 0 | 233 | 0 | 247 | 0 | 0 | scfv16 | N.A. | vicugna pacos | N.A. | C;B | protein;protein | guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 34;25 | 20;10 | 0.91;0.83 | H_only | train |
8dt3_H_L | 8dt3 | cryo-em structure of spike binding to fab of neutralizing antibody (locally refined) | no | viral protein/immune system | 2022-07-25 | 2022-08-03 | electron microscopy | 3.3 | N.A. | N.A. | 35926067 | 10.1126/sciimmunol.abp9962 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV1 | H | L | QVQLQQSGAELVKPGASVKISCKASGVAFSSYWMNWVKQRPGKGLEWIGQIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLSSEDSAVYFCARGFIATVEETMDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCAA | DIQMTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQSHTLPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGRVLARASPSPSPSLSREAC | QVQLQQSGAELVKPGASVKISCKASGVAFSSYWMNWVKQRPGKGLEWIGQIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLSSEDSAVYFCARGFIATVEETMDYWGQGTSVTVSSAS | DIQMTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQSHTLPWTFGGGTKLEIKRT | 14.07424 | 13.60952 | 232 | 231 | 123 | 109 | 123 | 109 | 42 | heavy chain fab of sw186 | light chain fab of sw186 | mus musculus | mus musculus | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 42 | 20 | 0.91 | HL | train |
8dt8_D | 8dt8 | lm18/nb136 bispecific tetra-nanobody immunoglobulin in complex with sars-cov-2-6p-mut7 s protein (focused refinement) | yes | viral protein | 2022-07-25 | 2023-06-14 | electron microscopy | 3.34 | N.A. | N.A. | 37276407 | 10.1073/pnas.2216612120 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | EVQLQESGGGLVQPGGSLRLSCAASGFTFSSYAMGWYRQAPGKEREWVCAISGSGGSTYYADSVKGRFTCSRDNSKNTLYLQMNSLKPEDTAVYYCARYGGPYDPTDSTYAFDYWGQGTQVTVSS | N.A. | VQLQESGGGLVQPGGSLRLSCAASGFTFSSYAMGWYRQAPGKEREWVCAISGSGGSTYYADSVKGRFTCSRDNSKNTLYLQMNSLKPEDTAVYYCARYGGPYDPTDSTYAFDYWGQGTQVTVS | N.A. | 14.577251 | 0 | 125 | 0 | 123 | 0 | 123 | 0 | 0 | nb136 nanobody | N.A. | synthetic construct | N.A. | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 51 | 10 | 0.45 | H_only | train |
8dt8_H | 8dt8 | lm18/nb136 bispecific tetra-nanobody immunoglobulin in complex with sars-cov-2-6p-mut7 s protein (focused refinement) | yes | viral protein | 2022-07-25 | 2023-06-14 | electron microscopy | 3.34 | N.A. | N.A. | 37276407 | 10.1073/pnas.2216612120 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | H | N.A. | EVQLQESGGGLVQPGGSLRLSCAASGFTFSSYALGWYRQAPGKEREWVCAISGSGGSTYYADSVKGRFTCSRDNSKNTLYLQMNSLKPEDTAVYYCARVYQFYGARDYGYPYDFDYWGQGTQVTVSS | N.A. | VQLQESGGGLVQPGGSLRLSCAASGFTFSSYALGWYRQAPGKEREWVCAISGSGGSTYYADSVKGRFTCSRDNSKNTLYLQMNSLKPEDTAVYYCARVYQFYGARDYGYPYDFDYWGQGTQVTVSS | N.A. | 14.140553 | 0 | 127 | 0 | 126 | 0 | 126 | 0 | 0 | lm18 nanobody | N.A. | synthetic construct | N.A. | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 33 | 12 | 0.75 | H_only | train |
8dtk_C_B | 8dtk | structure of rbd directed antibody dh1047 in complex with sars-cov-2 spike: local refinement of rbd-fab interace | no | viral protein/immune system | 2022-07-25 | 2023-08-02 | electron microscopy | 3.77 | N.A. | N.A. | 38187726 | 10.1101/2023.12.18.572191 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV4 | C | B | QVQLVQSGAEVKKPGASVQVSCQASANTFTNHYIHWVRQAPGQGLEWMGIIYPTGGNTIYAQGFQGRVTMTRDTSLNTIYLELSSLRSEDTAVYYCARDVRVDDSWSGYDLLSGGTYFDYWGQGTLVTVSSAS | DIVMTQSPDSLAVSLGERATINCRSSQSVLYSSNNENYLAWYQQKPGQPPKLLIYWASTRESGIPDRFSGSGSGTDFTLTISRLQAEDVAVYYCQQYYSLPRTFGQGTKVEIK | QVQLVQSGAEVKKPGASVQVSCQASANTFTNHYIHWVRQAPGQGLEWMGIIYPTGGNTIYAQGFQGRVTMTRDTSLNTIYLELSSLRSEDTAVYYCARDVRVDDSWSGYDLLSGGTYFDYWGQGTLVTVSSAS | DIVMTQSPDSLAVSLGERATINCRSSQSVLYSSNNENYLAWYQQKPGQPPKLLIYWASTRESGIPDRFSGSGSGTDFTLTISRLQAEDVAVYYCQQYYSLPRTFGQGTKVEIK | 14.821311 | 13.896586 | 133 | 113 | 133 | 113 | 133 | 113 | 41 | dh1047 fab heavy chain | dh1047 fab light chain | homo sapiens | homo sapiens | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 69 | 28 | 0.9 | HL | train |
8dtr_A_B | 8dtr | crystal structure of sars-cov-2 spike stem helix peptide in complex with neutralizing antibody cov30-14 | no | immune system | 2022-07-26 | 2022-11-23 | x-ray diffraction | 1.5 | 0.222 | 0.198 | 36347257 | 10.1016/j.chom.2022.10.010 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | A | B | QVQLVQSGAEVKKPGASVKVSCQTSGYTFTSYYMHWVRQAPGQGLEWMGLITPSGDDTYYAQRFQGRVTMTRDTSTSPTYMELSSLTSEDTAVYYCAKMSRAGGFDVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EVVLTQSPGTLSLSPGERATLSCRASQSITGRYLAWYQQKPGQAPRLLMYGESSRVTGIPDRFSGGGSGTDFTLTISRLEPEDFAVYYCQHFASSPPTYTFGQGTKLEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VQLVQSGAEVKKPGASVKVSCQTSGYTFTSYYMHWVRQAPGQGLEWMGLITPSGDDTYYAQRFQGRVTMTRDTSTSPTYMELSSLTSEDTAVYYCAKMSRAGGFDVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | EVVLTQSPGTLSLSPGERATLSCRASQSITGRYLAWYQQKPGQAPRLLMYGESSRVTGIPDRFSGGGSGTDFTLTISRLEPEDFAVYYCQHFASSPPTYTFGQGTKLEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 21.172142 | 23.088009 | 221 | 217 | 207 | 216 | 218 | 216 | 91 | cov30-14 heavy chain | cov30-14 light chain | homo sapiens | homo sapiens | G | peptide | spike protein s2' stem helix peptide | severe acute respiratory syndrome coronavirus 2 | 34 | 16 | 0.73 | HL | train |
8dtr_E_F | 8dtr | crystal structure of sars-cov-2 spike stem helix peptide in complex with neutralizing antibody cov30-14 | no | immune system | 2022-07-26 | 2022-11-23 | x-ray diffraction | 1.5 | 0.222 | 0.198 | 36347257 | 10.1016/j.chom.2022.10.010 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | E | F | QVQLVQSGAEVKKPGASVKVSCQTSGYTFTSYYMHWVRQAPGQGLEWMGLITPSGDDTYYAQRFQGRVTMTRDTSTSPTYMELSSLTSEDTAVYYCAKMSRAGGFDVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EVVLTQSPGTLSLSPGERATLSCRASQSITGRYLAWYQQKPGQAPRLLMYGESSRVTGIPDRFSGGGSGTDFTLTISRLEPEDFAVYYCQHFASSPPTYTFGQGTKLEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVQSGAEVKKPGASVKVSCQTSGYTFTSYYMHWVRQAPGQGLEWMGLITPSGDDTYYAQRFQGRVTMTRDTSTSPTYMELSSLTSEDTAVYYCAKMSRAGGFDVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | EVVLTQSPGTLSLSPGERATLSCRASQSITGRYLAWYQQKPGQAPRLLMYGESSRVTGIPDRFSGGGSGTDFTLTISRLEPEDFAVYYCQHFASSPPTYTFGQGTKLEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 21.712934 | 23.208364 | 221 | 217 | 213 | 216 | 218 | 216 | 91 | cov30-14 heavy chain | cov30-14 light chain | homo sapiens | homo sapiens | J | peptide | spike protein s2' stem helix peptide | severe acute respiratory syndrome coronavirus 2 | 35 | 17 | 0.74 | HL | train |
8dtt_A_B | 8dtt | crystal structure of sars-cov-2 spike stem helix peptide in complex with neutralizing antibody cov93-03 | no | immune system | 2022-07-26 | 2022-11-23 | x-ray diffraction | 1.75 | 0.225 | 0.195 | 36347257 | 10.1016/j.chom.2022.10.010 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | A | B | QLQLVQSGAEVKKPGASVKLSCKASGNTFTSHYIHWVRQAPGQGPEWMGIINPSGSGTRYAQKFQGRVTMTRDTSTSTVYMELVSLRFEDTAVYYCAGDYYLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EFVLTQSPGTLSLSPGERATLSCRASQSVTSNYLAWYQQKPGQAPRLLIFGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPPMYTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QLQLVQSGAEVKKPGASVKLSCKASGNTFTSHYIHWVRQAPGQGPEWMGIINPSGSGTRYAQKFQGRVTMTRDTSTSTVYMELVSLRFEDTAVYYCAGDYYLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | EFVLTQSPGTLSLSPGERATLSCRASQSVTSNYLAWYQQKPGQAPRLLIFGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPPMYTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 21.641417 | 22.953293 | 218 | 217 | 213 | 216 | 216 | 216 | 93 | cov93-03 heavy chain | cov93-03 light chain | homo sapiens | homo sapiens | G | peptide | spike protein s2' stem helix peptide | severe acute respiratory syndrome coronavirus 2 | 28 | 15 | 0.79 | HL | train |
8dtt_E_F | 8dtt | crystal structure of sars-cov-2 spike stem helix peptide in complex with neutralizing antibody cov93-03 | no | immune system | 2022-07-26 | 2022-11-23 | x-ray diffraction | 1.75 | 0.225 | 0.195 | 36347257 | 10.1016/j.chom.2022.10.010 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV3 | E | F | QLQLVQSGAEVKKPGASVKLSCKASGNTFTSHYIHWVRQAPGQGPEWMGIINPSGSGTRYAQKFQGRVTMTRDTSTSTVYMELVSLRFEDTAVYYCAGDYYLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EFVLTQSPGTLSLSPGERATLSCRASQSVTSNYLAWYQQKPGQAPRLLIFGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPPMYTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | LQLVQSGAEVKKPGASVKLSCKASGNTFTSHYIHWVRQAPGQGPEWMGIINPSGSGTRYAQKFQGRVTMTRDTSTSTVYMELVSLRFEDTAVYYCAGDYYLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | FVLTQSPGTLSLSPGERATLSCRASQSVTSNYLAWYQQKPGQAPRLLIFGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPPMYTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 21.126461 | 22.921833 | 218 | 217 | 206 | 215 | 214 | 215 | 88 | cov93-03 heavy chain | cov93-03 light chain | homo sapiens | homo sapiens | J | peptide | spike protein s2' stem helix peptide | severe acute respiratory syndrome coronavirus 2 | 25 | 14 | 0.78 | HL | train |
8dtn_A | 8dtn | the complex of nanobody 6101 with bcl11a zf6 | no | dna binding protein | 2022-07-26 | 2023-02-01 | x-ray diffraction | 2.2 | 0.232 | 0.195 | 36626555 | 10.1073/pnas.2218959120 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | A | N.A. | RVQLVESGGGLVQAGGSLRLSCAASGFIFDSYAMGWYRQAPGKEMELVAAITSSGSSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALDYVIDGYWGQGTQVTVSS | N.A. | RVQLVESGGGLVQAGGSLRLSCAASGFIFDSYAMGWYRQAPGKEMELVAAITSSGSSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALDYVIDGYWGQGTQVTVSS | N.A. | 13.510929 | 0 | 117 | 0 | 114 | 0 | 117 | 0 | 0 | nanobody 6101 | N.A. | lama glama | N.A. | B | peptide | b-cell lymphoma/leukemia 11a | homo sapiens | 29 | 9 | 0.5 | H_only | train |
8dtn_C | 8dtn | the complex of nanobody 6101 with bcl11a zf6 | no | dna binding protein | 2022-07-26 | 2023-02-01 | x-ray diffraction | 2.2 | 0.232 | 0.195 | 36626555 | 10.1073/pnas.2218959120 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | RVQLVESGGGLVQAGGSLRLSCAASGFIFDSYAMGWYRQAPGKEMELVAAITSSGSSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALDYVIDGYWGQGTQVTVSS | N.A. | RVQLVESGGGLVQAGGSLRLSCAASGFIFDSYAMGWYRQAPGKEMELVAAITSSGSSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALDYVIDGYWGQGTQVTVSS | N.A. | 13.474451 | 0 | 117 | 0 | 114 | 0 | 117 | 0 | 0 | nanobody 6101 | N.A. | lama glama | N.A. | D | peptide | b-cell lymphoma/leukemia 11a | homo sapiens | 28 | 10 | 0.56 | H_only | train |
8dtn_E | 8dtn | the complex of nanobody 6101 with bcl11a zf6 | no | dna binding protein | 2022-07-26 | 2023-02-01 | x-ray diffraction | 2.2 | 0.232 | 0.195 | 36626555 | 10.1073/pnas.2218959120 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | E | N.A. | RVQLVESGGGLVQAGGSLRLSCAASGFIFDSYAMGWYRQAPGKEMELVAAITSSGSSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALDYVIDGYWGQGTQVTVSS | N.A. | RVQLVESGGGLVQAGGSLRLSCAASGFIFDSYAMGWYRQAPGKEMELVAAITSSGSSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALDYVIDGYWGQGTQVTVSS | N.A. | 13.55826 | 0 | 117 | 0 | 114 | 0 | 117 | 0 | 0 | nanobody 6101 | N.A. | lama glama | N.A. | F | peptide | b-cell lymphoma/leukemia 11a | homo sapiens | 33 | 9 | 0.45 | H_only | train |
8dtn_G | 8dtn | the complex of nanobody 6101 with bcl11a zf6 | no | dna binding protein | 2022-07-26 | 2023-02-01 | x-ray diffraction | 2.2 | 0.232 | 0.195 | 36626555 | 10.1073/pnas.2218959120 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | G | N.A. | RVQLVESGGGLVQAGGSLRLSCAASGFIFDSYAMGWYRQAPGKEMELVAAITSSGSSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALDYVIDGYWGQGTQVTVSS | N.A. | RVQLVESGGGLVQAGGSLRLSCAASGFIFDSYAMGWYRQAPGKEMELVAAITSSGSSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALDYVIDGYWGQGTQVTVSS | N.A. | 13.464609 | 0 | 117 | 0 | 114 | 0 | 117 | 0 | 0 | nanobody 6101 | N.A. | lama glama | N.A. | H | peptide | b-cell lymphoma/leukemia 11a | homo sapiens | 30 | 8 | 0.42 | H_only | train |
8dtu_A | 8dtu | the complex of nanobody 5344n74d with bcl11a zf6. | no | dna binding protein | 2022-07-26 | 2023-02-01 | x-ray diffraction | 2.45 | 0.288 | 0.261 | 36626555 | 10.1073/pnas.2218959120 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | A | N.A. | SGGGLVQAGDSLRLSCAASGSTFSGYAMGWYRQAPGKERELVAAITSSGASTYYADSVRGRFTISRDDAKNTVYLQMNSLKPEDTAVYYCAALDEGYLDYDSWGQGTQVTVSS | N.A. | SGGGLVQAGDSLRLSCAASGSTFSGYAMGWYRQAPGKERELVAAITSSGASTYYADSVRGRFTISRDDAKNTVYLQMNSLKPEDTAVYYCAALDEGYLDYDSWGQGTQVTVSS | N.A. | 13.43537 | 0 | 113 | 0 | 111 | 0 | 113 | 0 | 0 | nanobody 5344n74d | N.A. | lama glama | N.A. | C | peptide | b-cell lymphoma/leukemia 11a | homo sapiens | 32 | 12 | 0.6 | H_only | train |
8aia_D | 8aia | cryo-em structure of crescentin filaments (wildtype, c1 symmetry and large box) | no | structural protein | 2022-07-26 | 2023-08-16 | electron microscopy | 5.1 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | D | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.797539 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | B | protein | crescentin | caulobacter vibrioides | 21 | 8 | 0.62 | H_only | train |
8aia_I | 8aia | cryo-em structure of crescentin filaments (wildtype, c1 symmetry and large box) | no | structural protein | 2022-07-26 | 2023-08-16 | electron microscopy | 5.1 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | I | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.488325 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | M | protein | crescentin | caulobacter vibrioides | 18 | 6 | 0.6 | H_only | train |
8aia_J | 8aia | cryo-em structure of crescentin filaments (wildtype, c1 symmetry and large box) | no | structural protein | 2022-07-26 | 2023-08-16 | electron microscopy | 5.1 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | J | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | VQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGGS... | N.A. | 13.28379 | 0 | 907 | 0 | 111 | 0 | 886 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | N | protein | crescentin | caulobacter vibrioides | 15 | 5 | 0.56 | H_only | train |
8aia_C | 8aia | cryo-em structure of crescentin filaments (wildtype, c1 symmetry and large box) | no | structural protein | 2022-07-26 | 2023-08-16 | electron microscopy | 5.1 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | C | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | VQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGGS... | N.A. | 12.488722 | 0 | 907 | 0 | 94 | 0 | 884 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
7ym8_D | 7ym8 | cryo-em structure of nb29-alpha1aar-minigsq complex bound to oxymetazoline | no | membrane protein | 2022-07-27 | 2023-07-05 | electron microscopy | 2.92 | N.A. | N.A. | 37339967 | 10.1038/s41467-023-39310-x | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGNISAHWKMGWYRQAPGKEREFVAGIGYANTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAYSYYRDHSYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQAGGSLRLSCAASGNISAHWKMGWYRQAPGKEREFVAGIGYANTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAYSYYRDHSYWGQGTQVTVSS | N.A. | 13.75067 | 0 | 144 | 0 | 116 | 0 | 116 | 0 | 0 | nanobody 29 | N.A. | synthetic construct | N.A. | A | protein | alpha1a adrenergic receptor | homo sapiens | 45 | 13 | 0.65 | H_only | train |
8dul_H_L | 8dul | cryo-em structure of antibody skt05 in complex with western equine encephalitis virus spike (local refinement from vlp particles) | no | immune system | 2022-07-27 | 2023-07-05 | electron microscopy | 4.17 | N.A. | N.A. | 37295404 | 10.1016/j.cell.2023.05.019 | 0 | auth_asym_id | VH:VL | IGHV3 | IGKV1 | H | L | EVQLVESGAGLVQPGGSLRLSCAASGFTFSDSWMSWVRQSPGKGLEWVGRIKGKPDGETAAYAASVKGRFSISRDDSKNTLYLQMNSLKTEDTAVYYCTRDDRTSCRRGVCYAAFHSWGQGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ | DIQMTQSPSSLSASAGDRVTLTCRASQAISFYLAWYQQKPGKAPKRLIYDASELQGGVPSRFSGSGSGTDFTLSINSLQPEDSATYFCLQYDSPPFTFGPGTKVEIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGAGLVQPGGSLRLSCAASGFTFSDSWMSWVRQSPGKGLEWVGRIKGKPDGETAAYAASVKGRFSISRDDSKNTLYLQMNSLKTEDTAVYYCTRDDRTSCRRGVCYAAFHSWGQGVLVTVSS | DIQMTQSPSSLSASAGDRVTLTCRASQAISFYLAWYQQKPGKAPKRLIYDASELQGGVPSRFSGSGSGTDFTLSINSLQPEDSATYFCLQYDSPPFTFGPGTKVEIK | 14.722241 | 13.326894 | 239 | 214 | 128 | 107 | 128 | 107 | 37 | antibody fab skt05 heavy chain | antibody fab skt05 light chain | macaca fascicularis | macaca fascicularis | A | protein | spike glycoprotein e1 | western equine encephalitis virus | 46 | 20 | 0.87 | HL | train |
8dun_N_O | 8dun | cryo-em structure of antibody skw11 in complex with western equine encephalitis virus spike (local refinement from vlp particles) | no | immune system | 2022-07-27 | 2023-07-05 | electron microscopy | 5.84 | N.A. | N.A. | 37295404 | 10.1016/j.cell.2023.05.019 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | N | O | QVQLQESGPGLVKPSETLSLTCAVSGDSISNNYWTWIRHFPGKGLEWIGRIYGDAGSTDYNPSLKSRVTISMDLSKNQFSLDLTSVTVADTALYYCASRTTVADNWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ | DIQMTQSPSSLSASVGDTVTITCRATQSISSLLAWYQYKPGKAPKLLIYQASSLHIGVPSRFSGSGSGTDFTLTISSLQSEDFATYYCQQHDSRPWTFGQGTKVDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLQESGPGLVKPSETLSLTCAVSGDSISNNYWTWIRHFPGKGLEWIGRIYGDAGSTDYNPSLKSRVTISMDLSKNQFSLDLTSVTVADTALYYCASRTTVADNWFDVWGPGVLVTVSS | DIQMTQSPSSLSASVGDTVTITCRATQSISSLLAWYQYKPGKAPKLLIYQASSLHIGVPSRFSGSGSGTDFTLTISSLQSEDFATYYCQQHDSRPWTFGQGTKVDIK | 13.698057 | 13.434479 | 231 | 214 | 120 | 107 | 120 | 107 | 46 | antibody skw11 heavy chain | antibody skw11 light chain | macaca fascicularis | macaca fascicularis | B | protein | spike glycoprotein e2 | western equine encephalitis virus | 32 | 12 | 0.71 | HL | train |
8dun_H_L | 8dun | cryo-em structure of antibody skw11 in complex with western equine encephalitis virus spike (local refinement from vlp particles) | no | immune system | 2022-07-27 | 2023-07-05 | electron microscopy | 5.84 | N.A. | N.A. | 37295404 | 10.1016/j.cell.2023.05.019 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | H | L | QVQLQESGPGLVKPSETLSLTCAVSGDSISNNYWTWIRHFPGKGLEWIGRIYGDAGSTDYNPSLKSRVTISMDLSKNQFSLDLTSVTVADTALYYCASRTTVADNWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ | DIQMTQSPSSLSASVGDTVTITCRATQSISSLLAWYQYKPGKAPKLLIYQASSLHIGVPSRFSGSGSGTDFTLTISSLQSEDFATYYCQQHDSRPWTFGQGTKVDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLQESGPGLVKPSETLSLTCAVSGDSISNNYWTWIRHFPGKGLEWIGRIYGDAGSTDYNPSLKSRVTISMDLSKNQFSLDLTSVTVADTALYYCASRTTVADNWFDVWGPGVLVTVSS | IQMTQSPSSLSASVGDTVTITCRATQSISSLLAWYQYKPGKAPKLLIYQASSLHIGVPSRFSGSGSGTDFTLTISSLQSEDFATYYCQQHDSRPWTFGQGTKVDIK | 13.69809 | 13.349753 | 231 | 214 | 120 | 106 | 120 | 106 | 46 | antibody skw11 heavy chain | antibody skw11 light chain | macaca fascicularis | macaca fascicularis | G | protein | spike glycoprotein e2 | western equine encephalitis virus | 29 | 11 | 0.73 | HL | train |
8dun_I_M | 8dun | cryo-em structure of antibody skw11 in complex with western equine encephalitis virus spike (local refinement from vlp particles) | no | immune system | 2022-07-27 | 2023-07-05 | electron microscopy | 5.84 | N.A. | N.A. | 37295404 | 10.1016/j.cell.2023.05.019 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | I | M | QVQLQESGPGLVKPSETLSLTCAVSGDSISNNYWTWIRHFPGKGLEWIGRIYGDAGSTDYNPSLKSRVTISMDLSKNQFSLDLTSVTVADTALYYCASRTTVADNWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ | DIQMTQSPSSLSASVGDTVTITCRATQSISSLLAWYQYKPGKAPKLLIYQASSLHIGVPSRFSGSGSGTDFTLTISSLQSEDFATYYCQQHDSRPWTFGQGTKVDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLQESGPGLVKPSETLSLTCAVSGDSISNNYWTWIRHFPGKGLEWIGRIYGDAGSTDYNPSLKSRVTISMDLSKNQFSLDLTSVTVADTALYYCASRTTVADNWFDVWGPGVLVTVSS | IQMTQSPSSLSASVGDTVTITCRATQSISSLLAWYQYKPGKAPKLLIYQASSLHIGVPSRFSGSGSGTDFTLTISSLQSEDFATYYCQQHDSRPWTFGQGTKVDIK | 13.698057 | 13.347955 | 231 | 214 | 120 | 106 | 120 | 106 | 46 | antibody skw11 heavy chain | antibody skw11 light chain | macaca fascicularis | macaca fascicularis | K | protein | spike glycoprotein e2 | western equine encephalitis virus | 33 | 13 | 0.76 | HL | train |
8duz_C_D | 8duz | protective antibody against gonococcal lipooligosaccharide bound to peptide mimetic | no | immune system | 2022-07-27 | 2023-07-05 | x-ray diffraction | 1.65 | 0.234 | 0.189 | 39055159 | 10.1021/jacsau.4c00359 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGLV7 | C | D | EVQLQQSGPELVKPGSSVKISCKGSGYTFTDYNMEWVKQSHGKSLEWIGVINPNNRFTSYNQNFRGKATLTVDKSSSTAYMDLRSLTSEDSAVYFCAGSRWYQYDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGATAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHAPSNTKVDKKVEPKSCD | QVVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGINNRAPGVPARFSGSLIADKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | VQLQQSGPELVKPGSSVKISCKGSGYTFTDYNMEWVKQSHGKSLEWIGVINPNNRFTSYNQNFRGKATLTVDKSSSTAYMDLRSLTSEDSAVYFCAGSRWYQYDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGATAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHAPSNTKVDKKVEP | VVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGINNRAPGVPARFSGSLIADKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT | 22.484238 | 22.241074 | 221 | 215 | 208 | 211 | 216 | 211 | 90 | igg heavy chain, fd fragment | ig, lambda light chain | mus musculus | mus musculus | E | peptide | mimetic peptide | bacteriophage sp. | 27 | 16 | 0.89 | HL | train |
8duz_A_B | 8duz | protective antibody against gonococcal lipooligosaccharide bound to peptide mimetic | no | immune system | 2022-07-27 | 2023-07-05 | x-ray diffraction | 1.65 | 0.234 | 0.189 | 39055159 | 10.1021/jacsau.4c00359 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGLV7 | A | B | EVQLQQSGPELVKPGSSVKISCKGSGYTFTDYNMEWVKQSHGKSLEWIGVINPNNRFTSYNQNFRGKATLTVDKSSSTAYMDLRSLTSEDSAVYFCAGSRWYQYDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGATAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHAPSNTKVDKKVEPKSCD | QVVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGINNRAPGVPARFSGSLIADKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | VQLQQSGPELVKPGSSVKISCKGSGYTFTDYNMEWVKQSHGKSLEWIGVINPNNRFTSYNQNFRGKATLTVDKSSSTAYMDLRSLTSEDSAVYFCAGSRWYQYDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGATAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHAPSNTKVDKKVEP | VVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGINNRAPGVPARFSGSLIADKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT | 21.651575 | 21.952654 | 221 | 215 | 209 | 211 | 216 | 211 | 94 | igg heavy chain, fd fragment | ig, lambda light chain | mus musculus | mus musculus | F | peptide | mimetic peptide | bacteriophage sp. | 31 | 17 | 0.89 | HL | train |
8aix_D | 8aix | cryo-em structure of crescentin filaments (wildtype, c2 symmetry and large box) | no | structural protein | 2022-07-27 | 2023-08-16 | electron microscopy | 5.8 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | D | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.797535 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | B | protein | crescentin | caulobacter vibrioides | 21 | 8 | 0.62 | H_only | train |
8aix_P | 8aix | cryo-em structure of crescentin filaments (wildtype, c2 symmetry and large box) | no | structural protein | 2022-07-27 | 2023-08-16 | electron microscopy | 5.8 | N.A. | N.A. | 38324567 | 10.1073/pnas.2309984121 | 0 | auth_asym_id | VH | IGHV3 | N.A. | P | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | EVQLQESGGGLVYKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGG... | N.A. | 13.797535 | 0 | 907 | 0 | 112 | 0 | 887 | 0 | 0 | crescentin-specific megabody mb13 | N.A. | camelidae | N.A. | F | protein | crescentin | caulobacter vibrioides | 21 | 8 | 0.62 | H_only | train |
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