pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3v0w | H | L | 0 | H | carbohydrate | KDO | polysaccharide | IMMUNE SYSTEM | 12/08/11 | Crystal structure of Fab WN1 222-5 in complex with LPS | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Gomery, K., Evans, S.V. | 1.73 | X-RAY DIFFRACTION | 0.231 | 0.182 | false | false | IGHV7 | IGKV15 | Kappa | null | null | null | null | null |
3chn | D | N | 5 | null | null | null | null | IMMUNE SYSTEM | 03/10/08 | Solution structure of human secretory IgA1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Almogren, A., Furtado, P.B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING / HOMOLOGY MODEL | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
5c7k | A | B | 0 | C | protein | null | envelope glycoprotein gp120 | IMMUNE SYSTEM | 06/24/15 | Crystal structure BG505 SOSIP gp140 HIV-1 Env trimer bound to broadly neutralizing antibodies PGT128 and 8ANC195 | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Kong, L., Stanfield, R.L., Wilson, I.A. | 4.6019 | X-RAY DIFFRACTION | 0.295 | 0.289 | false | true | unknown | IGLV2 | Lambda | null | null | null | null | null |
7k4n | C | D | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 09/15/20 | SARS-CoV-2 spike in complex with the S2E12 neutralizing antibody Fab fragment | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Tortorici, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7p77 | Y | null | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN | 07/19/21 | SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 3up conformation | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; SYNTHETIC CONSTRUCT | synthetic construct | null | severe acute respiratory syndrome coronavirus2 | Walter, J.D., Hutter, C.A.J., Garaeva, A.A., Scherer, M., Zimmermann, I., Wyss, M., Rheinberger, J., Ruedin, Y., Earp, J.C., Egloff, P., Sorgenfrei, M., Huerlimann, L.M., Gonda, I., Meier, G., Remm, S., Thavarasah, S., Zimmer, G., Slotboom, D.J., Paulino, C., Plattet, P., Seeger, M.A. | 2.98 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7mjj | D | E | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/Immune System | 04/20/21 | Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to Fab ab1 (class 1) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; SYNTHETIC CONSTRUCT | synthetic construct | synthetic construct | severe acute respiratory syndrome coronavirus2 | Zhu, X., Mannar, D., Srivastava, S.S., Berezuk, A.M., Demers, J.P., Saville, J.W., Leopold, K., Li, W., Dimitrov, D.S., Tuttle, K.S., Zhou, S., Chittori, S., Subramaniam, S. | 3.32 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
5udc | E | G | 0 | D | protein | null | fusion glycoprotein f0 | Viral Protein/Immune System | 12/26/16 | Crystal Structure of RSV F A2 Bound to MEDI8897 | HOMO SAPIENS; HUMAN RESPIRATORY SYNCYTIAL VIRUS A (STRAIN A2) | homo sapiens | homo sapiens | human respiratory syncytial virus a (straina2) | McLellan, J.S. | 3.45 | X-RAY DIFFRACTION | 0.232 | 0.175 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6h5n | F | E | 0 | D | protein | null | gametocyte surface protein p45/48 | CELL INVASION | 07/25/18 | Plasmodium falciparum Pfs48/45 C-terminal domain bound to monoclonal antibody 85RF45.1 | PLASMODIUM FALCIPARUM; RATTUS NORVEGICUS | rattus norvegicus | rattus norvegicus | plasmodium falciparum | Lennartz, F., Higgins, M.K. | 3.23 | X-RAY DIFFRACTION | 0.282 | 0.261 | false | true | IGHV5 | IGLV3 | Lambda | null | null | null | null | null |
4wht | O | P | 0 | o | peptide | null | unknown | VIRAL PROTEIN | 09/23/14 | Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the broadly neutralizing antibody 3/11, P1 crystal form | HEPATITIS C VIRUS; RATTUS NORVEGICUS | rattus norvegicus | rattus norvegicus | hepatitis c virus | Krey, T., Rey, F.A. | 2.22 | X-RAY DIFFRACTION | 0.243 | 0.209 | false | true | IGHV5 | IGKV2 | Kappa | 0 | -11.053614 | Unknown | null | TBD |
1oaz | J | N | 0 | B | protein | null | thioredoxin 1 | IMMUNE SYSTEM | 01/21/03 | IgE Fv SPE7 complexed with a recombinant thioredoxin | RATTUS RATTUS; ESCHERICHIA COLI | rattus rattus | rattus rattus | escherichia coli | James, L.C., Roversi, P., Tawfik, D. | 2.78 | X-RAY DIFFRACTION | 0.276 | 0.208 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
4edx | B | A | 0 | W | protein | null | beta-nerve growth factor | immune system | 03/27/12 | Nerve Growth Factor in Complex with Fab from mouse mAb 911 | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Eigenbrot, C., Ultsch, M. | 2.5 | X-RAY DIFFRACTION | 0.258 | 0.208 | false | true | IGHV2 | IGKV10 | Kappa | null | null | null | null | null |
4n1h | B | null | 0 | A | protein | null | beta-lactamase | HYDROLASE/IMMUNE SYSTEM | 10/04/13 | Structure of a single-domain camelid antibody fragment cAb-F11N in complex with the BlaP beta-lactamase from Bacillus licheniformis | LAMA GLAMA; BACILLUS LICHENIFORMIS | lama glama | null | bacillus licheniformis | Pain, C., Kerff, F., Herman, R., Sauvage, E., Preumont, S., Charlier, P., Dumoulin, M. | 3.0 | X-RAY DIFFRACTION | 0.284 | 0.208 | false | true | IGHV1 | null | null | null | null | null | null | null |
5f8q | D | null | 0 | B | protein | null | adhesin binding fucosylated histo-blood group antigen,adhesin,adhesin binding fucosylated histo-blood group antigen | CELL ADHESION | 12/09/15 | Blood group antigen binding adhesin BabA of Helicobacter pylori strain S831 in complex with Nanobody Nb-ER19 | HELICOBACTER PYLORI; LAMA GLAMA | lama glama | null | helicobacter pylori | Moonens, K., Gideonsson, P., Subedi, S., Romao, E., Oscarson, S., Muyldermans, S., Boren, T., Remaut, H. | 2.59 | X-RAY DIFFRACTION | 0.230 | 0.195 | false | true | IGHV1 | null | null | null | null | null | null | null |
7kfx | H | L | 0 | A | protein | null | surface glycoprotein | IMMUNE SYSTEM/Viral protein | 10/15/20 | Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-C2 Fab) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Pan, J., Abraham, J., Clark, L., Clark, S. | 2.226 | X-RAY DIFFRACTION | 0.226 | 0.191 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
1kel | H | L | 0 | H | Hapten | AAH | ? | CATALYTIC ANTIBODY | 04/16/96 | CATALYTIC ANTIBODY 28B4 FAB FRAGMENT COMPLEXED WITH HAPTEN (1-[N-4'-NITROBENZYL-N-4'-CARBOXYBUTYLAMINO] METHYLPHOSPHONIC ACID) | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Hsieh-Wilson, L.C., Schultz, P.G., Stevens, R.C. | 1.9 | X-RAY DIFFRACTION | 0.258 | 0.199 | false | false | IGHV7 | IGKV1 | Kappa | 0 | -9.83 | SPR | null | 11535051 |
3zlq | C | null | 0 | A | protein | null | beta-secretase 2 | HYDROLASE/IMMUNE SYSTEM | 02/04/13 | BACE2 XAPERONE COMPLEX | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Kuglstatter, A., Stihle, M. | 2.1 | X-RAY DIFFRACTION | 0.29601 | 0.23825 | false | true | IGHV3 | null | null | null | null | null | null | null |
7wpe | U | V | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 01/23/22 | SARS-CoV-2 Omicron Variant S Trimer complexed with two JMB2002 Fab | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; MUS MUSCULUS; LAMA GLAMA | mus musculus | mus musculus | severe acute respiratory syndrome coronavirus2 | Yin, W., Xu, Y., Xu, P., Cao, X., Wu, C., Gu, C., He, X., Wang, X., Huang, S., Yuan, Q., Wu, K., Hu, W., Huang, Z., Liu, J., Wang, Z., Jia, F., Xia, K., Liu, P., Wang, X., Song, B., Zheng, J., Jiang, H., Cheng, X., Jiang, Y., Deng, S.J., Xu, H.E. | 2.69 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7r63 | B | null | 0 | null | null | null | null | IMMUNE SYSTEM | 06/22/21 | Nb82, a nanobody against voltage gated sodium channels Nav1.4 and Nav1.5 | LAMA GLAMA | lama glama | null | null | Srinivasan, L., Gabelli, S.B. | 2.0 | X-RAY DIFFRACTION | 0.244 | 0.184 | false | true | IGHV1 | null | null | null | null | null | null | null |
1riv | H | L | 0 | H | Hapten | OBE | 3-(3-HYDROXY-BENZOYLOXY)-8-METHYL-8-AZA-BICYCLO[3.2.1]OCTANE-2-CARBOXYLIC ACID | IMMUNE SYSTEM | 11/18/03 | Anti-Cocaine Antibody M82G2 Complexed With meta-Oxybenzoylecgonine | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Pozharski, E., Hewagama, A., Shanafelt, A., Petsko, G., Ringe, D. | 2.2 | X-RAY DIFFRACTION | 0.215 | 0.172 | false | false | IGHV6 | IGKV2 | Kappa | null | null | null | null | null |
6rnn | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 05/09/19 | P46, an immunodominant surface protein from Mycoplasma hyopneumoniae | MUS MUSCULUS | mus musculus | mus musculus | null | Guasch, A., Fita, I. | 1.735 | X-RAY DIFFRACTION | 0.256 | 0.222 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
5i30 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 02/09/16 | Crystal structure of the human astrovirus 2 neutralizing monoclonal antibody PL-2 Fab fragment at 1.9 A resolution | MUS MUSCULUS | mus musculus | mus musculus | null | Bogdanoff, W.A., DuBois, R.M. | 1.9 | X-RAY DIFFRACTION | 0.221 | 0.180 | false | false | IGHV2 | IGKV10 | Kappa | null | null | null | null | null |
3cm9 | B | M | 3 | null | null | null | null | IMMUNE SYSTEM | 03/21/08 | Solution Structure of Human SIgA2 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Almogren, A., Furtado, P.B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
5mu0 | G | H | 0 | T | peptide | null | ia03 peptide containing the citrullinated c1 epitope ofcollagen type ii,collagen alpha-1(ii) chain,ia03 peptide containing the citrullinated c1 epitope of collagen type ii | IMMUNE SYSTEM | 01/11/17 | ACC1 Fab fragment in complex with citrullinated C1 epitope of CII (IA03) | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | mus musculus | Dobritzsch, D., Holmdahl, R., Ge, C. | 2.7 | X-RAY DIFFRACTION | 0.279 | 0.252 | false | false | IGHV6 | IGKV3 | Kappa | null | null | null | null | null |
5dfw | H | h | 0 | A | protein | null | cd81 antigen | CELL ADHESION | 08/27/15 | CRYSTAL STRUCTURE OF HUMAN CD81 LARGE EXTRACELLULAR LOOP IN COMPLEX WITH SINGLE CHAIN FV FRAGMENT K13 | MUS MUSCULUS; HOMO SAPIENS | mus musculus | null | homo sapiens | Harris, S.F., Villasenor, A., Kuglstatter, A. | 2.33 | X-RAY DIFFRACTION | 0.264 | 0.190 | true | true | unknown | unknown | unknown | 0 | -12.688875 | SPR | null | TBD |
7tfo | I | J | 0 | B | protein | null | envelope glycoprotein bg505 sosip.664 - gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 01/06/22 | Cryo-EM structure of HIV-1 Env trimer BG505 SOSIP.664 in complex with CD4bs antibody Ab1573 | HUMAN IMMUNODEFICIENCY VIRUS 1; MACACA MULATTA | macaca mulatta | macaca mulatta | human immunodeficiency virus 1 | Yang, Z., Bjorkman, P.J. | 4.1 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
7tyv | G | K | 0 | B | b | protein | protein | NA | NA | glycoprotein g2 | unknown | VIRAL PROTEIN/IMMUNE SYSTEM | 02/14/22 | Structure of Lassa Virus glycoprotein (Josiah) bound to Fab 25.10C | LASSA VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | lassa virus | lassa virus | Enriquez, A.S., Hastie, K.M. | 2.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4ybq | D | C | 0 | B | protein | null | solute carrier family 2, facilitated glucose transportermember 5 | TRANSPORT PROTEIN/IMMUNE SYSTEM | 02/19/15 | Rat GLUT5 with Fv in the outward-open form | MUS MUSCULUS; RATTUS NORVEGICUS | mus musculus | mus musculus | rattus norvegicus | Nomura, N., Shimamura, T., Iwata, S. | 3.27 | X-RAY DIFFRACTION | 0.288 | 0.242 | false | true | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
5f88 | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 12/09/15 | Cetuximab Fab in complex with L5Y meditope variant | MUS MUSCULUS, HOMO SAPIENS; SYNTHETIC CONSTRUCT | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Bzymek, K.P., Williams, J.C. | 2.481 | X-RAY DIFFRACTION | 0.217 | 0.163 | false | true | IGHV2 | IGKV5 | Kappa | null | null | null | null | null |
4qhk | O | P | 0 | null | null | null | null | IMMUNE SYSTEM | 05/28/14 | UCA (unbound) from CH103 Lineage | HOMO SAPIENS | homo sapiens | homo sapiens | null | Fera, D., Harrison, S.C. | 3.487 | X-RAY DIFFRACTION | 0.285 | 0.269 | false | true | IGHV4 | IGLV3 | Lambda | null | null | null | null | null |
3ulu | H | L | 0 | A | protein | null | toll-like receptor 3 | IMMUNE SYSTEM | 11/11/11 | Structure of quaternary complex of human TLR3ecd with three Fabs (Form1) | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Luo, J., Gilliland, G.L., Obmolova, O., Malia, T., Teplyakov, A. | 3.52 | X-RAY DIFFRACTION | 0.309 | 0.268 | false | true | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
3chn | D | N | 7 | null | null | null | null | IMMUNE SYSTEM | 03/10/08 | Solution structure of human secretory IgA1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Almogren, A., Furtado, P.B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING / HOMOLOGY MODEL | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
1b0w | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 11/13/98 | Structural comparison of amyloidogenic light chain dimer in two crystal forms with nonamyloidogenic counterparts | HOMO SAPIENS | null | homo sapiens | null | Schormann, N., Benson, M.D. | 1.8 | X-RAY DIFFRACTION | 0.299 | 0.226 | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
7aql | A | a | 0 | null | null | null | null | IMMUNE SYSTEM | 10/22/20 | Crystal Structure of an Anti-Plasminogen Activator Inhibitor-1 (PAI-1) scFv antibody fragment (scFv-33H1F7) | MUS MUSCULUS | mus musculus | null | null | Sillen, M., Weeks, S.D., Strelkov, S.V., Declerck, P.J. | 1.8 | X-RAY DIFFRACTION | 0.223 | 0.186 | true | true | unknown | unknown | unknown | null | null | null | null | null |
6u8k | H | L | 0 | A | nucleic-acid | null | jiiiabc rna (68-mer) | RNA/Immune System | 09/05/19 | Crystal structure of hepatitis C virus IRES junction IIIabc in complex with Fab HCV3 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | hepacivirus c | Koirala, D., Lewicka, A., Koldobskaya, Y., Huang, H., Piccirilli, J.A. | 2.75 | X-RAY DIFFRACTION | 0.222 | 0.186 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
3zdz | H | L | 0 | A | D | protein | protein | NA | NA | integrin alpha-iib | integrin beta-3 | CELL ADHESION/IMMUNE SYSTEM/PEPTIDE | 12/03/12 | Integrin alphaIIB beta3 headpiece and RGD peptide complex | HOMO SAPIENS; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | homo sapiens | Zhu, J.H., Zhu, J.Q., Springer, T.A. | 2.75 | X-RAY DIFFRACTION | 0.2211 | 0.1844 | false | true | IGHV14 | IGKV14 | Kappa | null | null | null | null | null |
6ikm | J | j | 0 | null | null | null | null | ANTIMICROBIAL PROTEIN | 10/16/18 | Crystal structure of SpuE-Spermidine in complex with ScFv5 | PSEUDOMONAS AERUGINOSA; HOMO SAPIENS | pseudomonas aeruginosa | homo sapiens | null | Wu, D., Sun, X. | 3.398 | X-RAY DIFFRACTION | 0.268 | 0.228 | true | true | unknown | unknown | unknown | null | null | null | null | null |
4yhy | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 02/27/15 | Crystal structure of 309M3-B in complex with trimethylated Lys | HOMO SAPIENS | homo sapiens | homo sapiens | null | Hattori, T., Dementieva, I.S., Montano, S.P., Koide, S. | 1.9 | X-RAY DIFFRACTION | 0.242 | 0.206 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
7zf3 | A | B | 0 | E | protein | null | spike protein s1 | VIRAL PROTEIN | 04/01/22 | SARS-CoV-2 Omicron RBD in complex with Omi-3 and EY6A Fabs | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Huo, J., Ren, J., Stuart, D.I. | 3.15 | X-RAY DIFFRACTION | 0.266 | 0.208 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
4nhh | E | G | 0 | null | null | null | null | IMMUNE SYSTEM | 11/05/13 | Structure of 2G12 IgG Dimer | HOMO SAPIENS | homo sapiens | homo sapiens | null | Wu, Y., West Jr., A.P., Kim, H.J., Thornton, M.E., Ward, A.B., Bjorkman, P.J. | 6.5 | X-RAY DIFFRACTION | 0.366 | 0.381 | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
1ors | B | A | 0 | C | protein | null | potassium channel | MEMBRANE PROTEIN | 03/14/03 | X-ray structure of the KvAP potassium channel voltage sensor in complex with an Fab | AEROPYRUM PERNIX; MUS MUSCULUS | mus musculus | mus musculus | aeropyrum pernix | Jiang, Y., Lee, A., Chen, J., Ruta, V., Cadene, M., Chait, B.T., MacKinnon, R. | 1.9 | X-RAY DIFFRACTION | 0.251 | 0.231 | false | false | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
5d1z | B | A | 0 | I | protein | null | iron-regulated surface determinant protein b | IMMUNE SYSTEM | 08/04/15 | IsdB NEAT1 bound by clone D4-10 | HOMO SAPIENS; STAPHYLOCOCCUS AUREUS (STRAIN MSSA476) | homo sapiens | homo sapiens | staphylococcus aureus (strain mssa476) | Deng, X. | 3.17 | X-RAY DIFFRACTION | 0.287 | 0.233 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5i0z | B | null | 0 | null | null | null | null | IMMUNE SYSTEM | 02/04/16 | Crystal structure of the single domain catalytic antibody 3D8-VH | MUS MUSCULUS | mus musculus | null | null | Park, S.Y., Kim, J.S. | 1.9 | X-RAY DIFFRACTION | 0.262 | 0.218 | false | true | IGHV1 | null | null | null | null | null | null | null |
5cd3 | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 07/02/15 | Structure of immature VRC01-class antibody DRVIA7 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Kong, L., Wilson, I.A. | 2.9 | X-RAY DIFFRACTION | 0.284 | 0.234 | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
3hns | H | L | 0 | H | carbohydrate | AXR | polysaccharide | IMMUNE SYSTEM | 06/01/09 | CS-35 Fab Complex with Oligoarabinofuranosyl Hexasaccharide | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Murase, T., Zheng, R.B., Joe, M., Bai, Y., Marcus, S.L., Lowary, T.L., Ng, K.K.S. | 2.0 | X-RAY DIFFRACTION | 0.217 | 0.170 | false | false | IGHV1 | IGKV10 | Kappa | null | null | null | null | null |
4w6x | B | null | 0 | A | protein | null | f18 fimbrial adhesin ac | CELL ADHESION | 08/21/14 | Co-complex structure of the lectin domain of F18 fimbrial adhesin FedF with inhibitory nanobody NbFedF7 | ESCHERICHIA COLI; LAMA GLAMA | lama glama | null | escherichia coli | Moonens, K., De Kerpel, M., Coddens, A., Cox, E., Pardon, E., Remaut, H., De Greve, H. | 1.88 | X-RAY DIFFRACTION | 0.226 | 0.186 | false | true | IGHV1 | null | null | null | null | null | null | null |
6l62 | H | L | 0 | A | protein | null | capsid protein | IMMUNE SYSTEM/VIRUS | 10/25/19 | Neutralization mechanism of a monoclonal antibody targeting a porcine circovirus type 2 Cap protein conformational epitope | MUS MUSCULUS; PORCINE CIRCOVIRUS 2 | mus musculus | mus musculus | porcine circovirus 2 | Sun, Z., Huang, L., Xia, D., Wei, Y., Sun, E., Zhu, H., Bian, H., Wu, H., Feng, L., Wang, J., Liu, C. | 7.2 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV6 | Kappa | null | null | null | null | null |
7bem | H | L | 0 | E | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 12/24/20 | Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-269 scFv | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Zhao, Y., Ren, J., Stuart, D. | 2.52 | X-RAY DIFFRACTION | 0.247 | 0.217 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7jx3 | A | B | 0 | R | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 08/26/20 | Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Snell, G., Czudnochowski, N., Rosen, L.E., Nix, J.C., Corti, D., Veesler, D., Park, Y.J., Walls, A.C., Tortorici, M.A., Cameroni, E., Pinto, D., Beltramello, M. | 2.65 | X-RAY DIFFRACTION | 0.288 | 0.258 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7tpj | H | L | 0 | B | protein | null | putative cell surface polysaccharide polymerase/ligase | MEMBRANE PROTEIN | 01/25/22 | Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its apo state | CUPRIAVIDUS METALLIDURANS; HOMO SAPIENS | homo sapiens | homo sapiens | cupriavidus metallidurans | Ashraf, K.U., Nygaard, R., Vickery, O.N., Erramilli, S.K., Herrera, C.M., McConville, T.H., Petrou, V.I., Giacometti, S.I., Dufrisne, M.B., Nosol, K., Zinkle, A.P., Graham, C.L.B., Loukeris, M., Kloss, B., Skorupinska-Tudek, K., Swiezewska, E., Roper, D., Clarke, O.B., Uhlemann, A.C., Kossiakoff, A.A., Trent, M.S., Sta... | 3.46 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4m3j | A | null | 0 | null | null | null | null | IMMUNE SYSTEM | 08/06/13 | Structure of a single-domain camelid antibody fragment cAb-H7S specific of the BlaP beta-lactamase from Bacillus licheniformis | LAMA GLAMA | lama glama | null | null | Pain, C., Kerff, F., Herman, R., Sauvage, E., Preumont, S., Charlier, P., Dumoulin, M. | 1.95 | X-RAY DIFFRACTION | 0.252 | 0.206 | false | true | IGHV1 | null | null | null | null | null | null | null |
7chb | H | L | 0 | R | protein | null | sars-cov-2 receptor binding domain | ANTIVIRAL PROTEIN/IMMUNE SYSTEM | 07/05/20 | Crystal structure of the SARS-CoV-2 RBD in complex with BD-236 Fab | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Junyu, X., Qinyu, Z. | 2.4 | X-RAY DIFFRACTION | 0.226 | 0.192 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2pw2 | B | A | 0 | C | peptide | null | peptide epitope | IMMUNE SYSTEM | 05/10/07 | Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELDKWKSL | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | null | Bryson, S., Julien, J.-P., Hynes, R.C., Pai, E.F. | 2.55 | X-RAY DIFFRACTION | 0.237 | 0.218 | false | false | IGHV2 | IGKV1 | Kappa | null | null | null | null | null |
6ute | A | B | 0 | null | null | null | null | VIRAL PROTEIN | 10/29/19 | Crystal structure of Z032 Fab in complex with WNV EDIII | HOMO SAPIENS; WEST NILE VIRUS | homo sapiens | homo sapiens | null | Esswein, S.R., Gristick, H.B., Keeffe, J.R., Bjorkman, P.J. | 2.9 | X-RAY DIFFRACTION | 0.264 | 0.223 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5vsh | E | F | 0 | null | null | null | null | IMMUNE SYSTEM | 05/11/17 | CH1/Clambda Fab based on Pertuzumab | HOMO SAPIENS | homo sapiens | homo sapiens | null | Hendle, J. | 2.55 | X-RAY DIFFRACTION | 0.255 | 0.207 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5vjq | G | H | 0 | L | protein | null | lysozyme | HYDROLASE/IMMUNE SYSTEM | 04/19/17 | Complex between HyHEL10 Fab fragment heavy chain mutant (I29F, S52T, Y53F) and Pekin duck egg lysozyme isoform I (DEL-I) | MUS MUSCULUS; ANAS PLATYRHYNCHOS | mus musculus | mus musculus | anas platyrhynchos | Langley, D.B., Christ, D. | 1.9 | X-RAY DIFFRACTION | 0.235 | 0.193 | false | true | IGHV3 | IGKV5 | Kappa | null | null | null | null | null |
3t65 | B | A | 0 | B | carbohydrate | KDA | polysaccharide | IMMUNE SYSTEM | 07/28/11 | S25-2- A(2-8)KDO disaccharide complex | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Nguyen, H.P., Seto, N.O., Mackenzie, C.R., Brade, L., Kosma, P., Brade, H., Evans, S.V. | 1.45 | X-RAY DIFFRACTION | 0.211 | 0.193 | false | true | IGHV7 | IGKV8 | Kappa | null | null | null | null | null |
7nx0 | D | null | 0 | C | protein | null | leukocyte tyrosine kinase receptor | PROTEIN BINDING | 03/17/21 | Extracellular TG and EGF-like domains of ALK | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | De Munck, S., Savvides, S.N. | 1.95 | X-RAY DIFFRACTION | 0.196 | 0.169 | false | true | IGHV1 | null | null | null | null | null | null | null |
4wfh | E | D | 0 | A | protein | null | potassium channel subfamily k member 4 | METAL TRANSPORT | 09/15/14 | Human TRAAK K+ channel in a Tl+ bound nonconductive conformation | MUS MUSCULUS; HOMO SAPIENS | mus musculus | mus musculus | homo sapiens | Brohawn, S.G., MacKinnon, R. | 3.01 | X-RAY DIFFRACTION | 0.239 | 0.203 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
6nmv | H | L | 0 | S | protein | null | tyrosine-protein phosphatase non-receptor type substrate 1 | IMMUNE SYSTEM | 01/11/19 | Non-Blocking Fab 218 anti-SIRP-alpha antibody in complex with SIRP-alpha Variant 1 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Wibowo, A.S., Carter, J.J., Sim, J. | 2.61 | X-RAY DIFFRACTION | 0.301 | 0.195 | false | true | IGHV3 | unknown | unknown | null | null | null | null | null |
7oxn | H | K | 0 | A | peptide | null | amyloid-beta precursor protein | IMMUNE SYSTEM | 06/22/21 | Crystal Structure of TAP01 in complex with cyclised amyloid beta peptide | Homo sapiens; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Hall, G., Cowan, R., Carr, M.D. | 2.5 | X-RAY DIFFRACTION | 0.265 | 0.228 | false | true | IGHV2 | IGKV10 | Kappa | null | null | null | null | null |
5w23 | I | M | 0 | B | protein | null | fusion glycoprotein f0 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/05/17 | Crystal Structure of RSV F in complex with 5C4 Fab | HUMAN RESPIRATORY SYNCYTIAL VIRUS A; MUS MUSCULUS | mus musculus | mus musculus | human respiratory syncytial virus a | Battles, M.B., McLellan, J.S. | 3.4 | X-RAY DIFFRACTION | 0.239 | 0.198 | false | true | IGHV14 | IGKV3 | Kappa | null | null | null | null | null |
1yc7 | B | null | 0 | null | null | null | null | IMMUNE SYSTEM | 12/22/04 | cAbAn33 VHH fragment against VSG | CAMELUS DROMEDARIUS | camelus dromedarius | null | null | Conrath, K., Vincke, C., Stijlemans, B., Schymkowitz, J., Wyns, L., Muyldermans, S., Loris, R. | 1.6 | X-RAY DIFFRACTION | 0.212 | 0.192 | false | true | IGHV1 | null | null | null | null | null | null | null |
5cjx | D | E | 0 | X | Y | protein | protein | NA | NA | bg505 env gp41 | bg505 env gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 07/15/15 | Crystal structure of 8ANC195 Fab in complex with BG505 SOSIP.664 HIV-1 Env trimer | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Scharf, L., Bjorkman, P.J. | 3.584 | X-RAY DIFFRACTION | 0.286 | 0.239 | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
5cjq | H | L | 0 | B | A | protein | protein | NA | NA | designed influenza hemagglutinin stem #4900, ha2 | designed influenza hemagglutinin stem #4900, ha1 | VIRAL PROTEIN/IMMUNE SYSTEM | 07/14/15 | Crystal structure of a trimeric influenza hemagglutinin stem in complex with an broadly neutralizing antibody CR9114 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | synthetic construct | synthetic construct | Zhu, X., Wilson, I.A. | 3.6 | X-RAY DIFFRACTION | 0.369 | 0.346 | false | true | IGHV1 | IGLV1 | Lambda | 0 | -12.688875 | BLI | null | TBD |
2kh2 | B | b | 5 | A | protein | null | interleukin-1 beta | Cytokine/IMMUNE SYSTEM | 03/23/09 | Solution structure of a scFv-IL-1B complex | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | Wilkinson, I.C., Hall, C.J., Veverka, V., Muskett, F.W., Stephens, P.E., Taylor, R.J., Henry, A.J., Carr, M.D. | NOT | SOLUTION NMR | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
6ws6 | C | D | 0 | A | Hapten | JEF | JEFFAMINE | IMMUNE SYSTEM | 05/27/20 | Structural and functional analysis of a potent sarbecovirus neutralizing antibody | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Pinto, D., Park, Y.J., Beltramello, M., Walls, A.C., Tortorici, M.A., Bianchi, S., Jaconi, S., Culap, K., Zatta, F., Marco, A.D., Peter, A., Guarino, B., Spreafico, R., Cameroni, E., Case, J.B., Chen, R.E., Havenar-Daughton, C., Snell, G., Telenti, A., Virgin, H.W., Lanzavecchia, A., Diamond, M.S., Fink, K., Veesler, D... | 3.3 | X-RAY DIFFRACTION | 0.227 | 0.188 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7rxc | H | L | 0 | B | protein | null | maltodextrin-binding protein,immunoglobulin g-bindingprotein a,immunoglobulin g-binding protein g | STRUCTURAL PROTEIN | 08/22/21 | CryoEM structure of KDELR with Legobody | MUS MUSCULUS; VICUGNA PACOS; ESCHERICHIA COLI; STAPHYLOCOCCUS AUREUS; STREPTOCOCCUS SP.; GALLUS GALLUS | mus musculus | mus musculus | escherichia coli, staphylococcus aureus,streptococcus sp. | Wu, X.D., Rapoport, T.A. | 3.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGKV8 | Kappa | null | null | null | null | null |
6os1 | D | null | 0 | A | protein | null | type-1 angiotensin ii receptor,soluble cytochrome b562 brilfusion protein | MEMBRANE PROTEIN | 05/01/19 | Structure of synthetic nanobody-stabilized angiotensin II type 1 receptor bound to TRV023 | HOMO SAPIENS; ESCHERICHIA COLI; SYNTHETIC CONSTRUCT; SYNTHETIC CONSTRUCT | synthetic construct | null | homo sapiens, escherichia coli | Wingler, L.M., Staus, D.P., Skiba, M.A., McMahon, C., Kleinhenz, A.L.W., Lefkowitz, R.J., Kruse, A.C. | 2.794 | X-RAY DIFFRACTION | 0.282 | 0.239 | false | true | IGHV1 | null | null | null | null | null | null | null |
3cfi | I | null | 0 | H | protein | null | type ii secretory pathway, pseudopilin epsj | PROTEIN TRANSPORT/Immune system | 03/03/08 | Nanobody-aided structure determination of the EPSI:EPSJ pseudopilin heterdimer from Vibrio Vulnificus | VIBRIO VULNIFICUS; LAMA GLAMA | lama glama | null | vibrio vulnificus | Lam, A.Y., Pardon, E., Korotkov, K.V., Steyaert, J., Hol, W.G.J. | 2.58 | X-RAY DIFFRACTION | 0.279 | 0.229 | false | true | IGHV3 | null | null | null | null | null | null | null |
1maj | null | A | 4 | null | null | null | null | IMMUNOGLOBULIN | 09/16/93 | SOLUTION STRUCTURE OF AN ISOLATED ANTIBODY VL DOMAIN | MUS MUSCULUS | null | mus musculus | null | Constantine, K.L., Friedrichs, M.S., Metzler, W.J., Wittekind, M., Hensley, P., Mueller, L. | NOT | SOLUTION NMR | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
7pnm | G | D | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 09/07/21 | Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 46C12 antibody Fab fragment | HUMAN CORONAVIRUS OC43; HOMO SAPIENS | homo sapiens | homo sapiens | human coronavirus oc43 | Hurdiss, D.L. | 3.7 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
7sob | F | E | 0 | D | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 10/29/21 | SARS-CoV-2 S B.1.617.1 kappa variant + S309 + S2L20 Global Refinement | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 2.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5d6c | H | L | 0 | L | Hapten | 57S | 4-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-5-O-phosphono-D-ribitol | IMMUNE SYSTEM | 08/12/15 | Structure of 4497 Fab bound to synthetic wall teichoic acid fragment | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Lupardus, P.J., Fong, R. | 1.72 | X-RAY DIFFRACTION | 0.238 | 0.203 | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
2cju | H | L | 0 | H | Hapten | PHX | 4-{[(Z)-(5-OXO-2-PHENYL-1,3-OXAZOL-4(5H)-YLIDENE)METHYL]AMINO}BUTANOIC ACID | IMMUNE SYSTEM | 04/09/06 | Crystal structure of the TEPC15-Vk45.1 anti-2-phenyl-5-oxazolone NQ16- 113.8 scFv in complex with phOxGABA | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Scotti, C., Gherardi, E. | 2.5 | X-RAY DIFFRACTION | 0.291 | 0.241 | false | true | IGHV7 | IGKV1 | Kappa | null | null | null | null | null |
2kh2 | B | b | 63 | A | protein | null | interleukin-1 beta | Cytokine/IMMUNE SYSTEM | 03/23/09 | Solution structure of a scFv-IL-1B complex | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | Wilkinson, I.C., Hall, C.J., Veverka, V., Muskett, F.W., Stephens, P.E., Taylor, R.J., Henry, A.J., Carr, M.D. | NOT | SOLUTION NMR | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
6zec | H | L | 0 | A | carbohydrate | NAG | N-ACETYL-D-GLUCOSAMINE | IMMUNE SYSTEM | 06/16/20 | Crystal Structure of the Fab Fragment of a Glycosylated Lymphoma Antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Allen, J.D., Watanabe, Y., Crispin, M., Bowden, T.A. | 1.65 | X-RAY DIFFRACTION | 0.206 | 0.175 | false | true | IGHV4 | IGKV4 | Kappa | null | null | null | null | null |
6xym | A | null | 0 | null | null | null | null | IMMUNE SYSTEM | 01/30/20 | Nbe-LBM | LAMA GLAMA | lama glama | null | null | Pompidor, G., Zimmermann, S., Loew, C., Schneider, T. | 1.2 | X-RAY DIFFRACTION | 0.198 | 0.154 | false | true | IGHV1 | null | null | null | null | null | null | null |
3nz8 | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 07/16/10 | Crystal structure of the HIV-2 neutralizing Fab fragment 7C8 | MUS MUSCULUS | mus musculus | mus musculus | null | Uchtenhagen, H, Friemann, R, Raszewski, G, Spetz, A-L, Nilsson, L, Achour, A | 2.7 | X-RAY DIFFRACTION | 0.273 | 0.226 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7pnq | X | Y | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN | 09/07/21 | Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment | HOMO SAPIENS; HUMAN CORONAVIRUS OC43 | homo sapiens | homo sapiens | human coronavirus oc43 | Hurdiss, D.L. | 3.7 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGKV3 | Kappa | null | null | null | null | null |
7we8 | H | L | 0 | A | C | B | protein | protein | protein | NA | NA | NA | spike glycoprotein | spike glycoprotein | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 12/23/21 | SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv265 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | severe acute respiratory syndrome coronavirus2 | severe acute respiratory syndrome coronavirus2 | Wang, X., Wang, L. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV2 | IGLV2 | Lambda | null | null | null | null | null |
1lhz | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 04/17/02 | Structure of a Human Bence-Jones Dimer Crystallized in U.S. Space Shuttle Mission STS-95: 293K | HOMO SAPIENS | null | homo sapiens | null | Terzyan, S.S., DeWitt, C.R., Ramsland, P.A., Bourne, P.C., Edmundson, A.B. | 2.3 | X-RAY DIFFRACTION | 0.226 | 0.173 | false | false | null | IGLV2 | Lambda | null | null | null | null | null |
1lil | null | B | 0 | null | null | null | null | IMMUNOGLOBULIN | 05/13/96 | BENCE JONES PROTEIN CLE, A LAMBDA III IMMUNOGLOBULIN LIGHT-CHAIN DIMER | HOMO SAPIENS | null | homo sapiens | null | Schiffer, M., Huang, D.B. | 2.65 | X-RAY DIFFRACTION | 0.340 | 0.190 | false | false | null | IGLV3 | Lambda | null | null | null | null | null |
7cak | G | F | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 06/08/20 | SARS-CoV-2 S trimer with three RBD in the open state and complexed with three H014 Fab | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X. | 3.58 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV6 | Kappa | null | null | null | null | null |
5iv2 | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 03/18/16 | Cetuximab Fab in complex with Arg9Cir meditope variant | MUS MUSCULUS, HOMO SAPIENS; SYNTHETIC CONSTRUCT | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Bzymek, K.P., Williams, J.C. | 2.481 | X-RAY DIFFRACTION | 0.211 | 0.165 | false | true | IGHV2 | IGKV5 | Kappa | null | null | null | null | null |
6mnf | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 10/01/18 | Anti-HIV-1 Fab 2G12 + Man8 re-refinement | HOMO SAPIENS | homo sapiens | homo sapiens | null | Calarese, D.A., Stanfield, R.L., Wilson, I.A. | 2.758 | X-RAY DIFFRACTION | 0.252 | 0.218 | false | true | unknown | IGKV1 | Kappa | 0.000001 | -8.030018 | Unknown | null | TBD |
6n5d | L | N | 0 | K | protein | null | hemagglutinin | VIRAL PROTEIN/IMMUNE SYSTEM | 11/21/18 | Broadly protective antibodies directed to a subdominant influenza hemagglutinin epitope | INFLUENZA A VIRUS; MUS MUSCULUS | mus musculus | mus musculus | influenza a virus | Bajic, G., Schmidt, A.G. | 3.0 | X-RAY DIFFRACTION | 0.244 | 0.217 | false | true | IGHV5 | IGLV1 | Lambda | null | null | null | null | null |
7bud | H | L | 0 | A | C | protein | protein | NA | NA | dengue virus serotype 2 e protein | dengue virus serotype 2 e protein | VIRUS | 04/06/20 | Cryo-EM structure of Dengue virus serotype 2 complexed with Fab SIgN-3C at pH 8.0 | HOMO SAPIENS; DENGUE VIRUS 2 | homo sapiens | homo sapiens | dengue virus 2 | dengue virus 2 | Zhang, S., Chew, S.V., Lim, X.N., Ng, T.S., Kostyuchenko, V.A., Lok, S.M. | 4.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7k9j | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 09/29/20 | SARS-CoV-2 Spike in complex with neutralizing Fab 2H04 (three down conformation) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; MUS MUSCULUS | mus musculus | mus musculus | severe acute respiratory syndrome coronavirus2 | Errico, J.M., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID) | 3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV5 | Kappa | null | null | null | null | null |
6vlr | F | N | 0 | I | B | protein | protein | NA | NA | bg505 sosipv5.2 gp41 | bg505 sosipv5.2 gp41 | VIRAL PROTEIN/IMMUNE SYSTEM | 01/24/20 | BG505 SOSIP.v5.2 in complex with rhesus macaque Fab RM20E1 and PGT122 Fab | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS; MACACA MULATTA | macaca mulatta | macaca mulatta | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Cottrell, C.A., Ward, A.B. | 4.42 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGKV2 | Kappa | null | null | null | null | null |
6vmk | r | q | 0 | s | protein | null | unknown | HYDROLASE/IMMUNE SYSTEM | 01/28/20 | Crystal structure of human Complement Factor D with anti-Factor D Fab 20D12 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Wu, P., Harris, S.F., Eigenbrot, C. | 3.01 | X-RAY DIFFRACTION | 0.215 | 0.174 | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
5u4m | B | null | 0 | A | protein | null | ricin | HYDROLASE/IMMUNE SYSTEM | 12/05/16 | RTA-V1C7-G29R-no_salt | RICINUS COMMUNIS; VICUGNA PACOS | vicugna pacos | null | ricinus communis | Rudolph, M.J., Mantis, N. | 2.5 | X-RAY DIFFRACTION | 0.247 | 0.202 | false | true | IGHV1 | null | null | 0 | -12.836084 | SPR | null | TBD |
6xul | G | I | 0 | null | null | null | null | ANTITUMOR PROTEIN | 01/20/20 | Apo Ab 5b1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Diskin, R., Borenstein-Katz, A. | 2.41 | X-RAY DIFFRACTION | 0.230 | 0.168 | false | true | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
4gaj | H | L | 0 | P | peptide | null | genome polyprotein | IMMUNE SYSTEM | 07/25/12 | Structure of the broadly neutralizing antibody AP33 in complex with its HCV epitope (E2 residues 411-424) | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | hepatitis c virus | Potter, J.A., Owsianka, A., Taylor, G.L, Patel, A.H. | 2.51 | X-RAY DIFFRACTION | 0.320 | 0.240 | false | false | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7u8m | K | J | 0 | I | protein | null | hemagglutinin ha2 subunit | VIRAL PROTEIN/Immune System | 03/08/22 | Crystal structure of chimeric hemagglutinin cH15/3 in complex with broad protective antibodies 31.a.83 and FluA-20 | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | Zhu, X., Wilson, I.A. | 5.39 | X-RAY DIFFRACTION | 0.342 | 0.304 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
5o7p | B | A | 0 | C | protein | null | receptor tyrosine-protein kinase erbb-3 | IMMUNE SYSTEM | 06/09/17 | HER3 in complex with Fab MF3178 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | De Nardis, C., Gros, P. | 4.5 | X-RAY DIFFRACTION | 0.296 | 0.247 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7chh | G | H | 0 | B | protein | null | spike glycoprotein | ANTIVIRAL PROTEIN/IMMUNE SYSTEM | 07/05/20 | Cryo-EM structure of the SARS-CoV-2 S-6P in complex with BD-368-2 Fabs | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Xiao, J., Zhu, Q., Wang, G. | 3.49 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
7bep | A | B | 0 | E | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 12/24/20 | Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in a ternary complex with COVOX-384 and S309 Fabs | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Zhao, Y., Ren, J., Stuart, D. | 2.61 | X-RAY DIFFRACTION | 0.241 | 0.203 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6pcu | C | B | 0 | A | protein | null | outer capsid protein vp4 | viral protein/immune system | 06/18/19 | VP8* of a G2P[4] human rotavirus in complex with scFv antibody 9 | ROTAVIRUS A; HOMO SAPIENS | homo sapiens | homo sapiens | rotavirus a | Hu, L., Venkataram Prasad, B.V. | 2.4 | X-RAY DIFFRACTION | 0.237 | 0.186 | false | true | IGHV4 | IGLV9 | Lambda | null | null | null | null | null |
6sm1 | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 08/21/19 | Wild type immunoglobulin light chain (WT-1) | HOMO SAPIENS | null | homo sapiens | null | Kazman, P., Vielberg, M.-T., Cendales, M.D.P., Hunziger, L., Weber, B., Hegenbart, U., Zacharias, M., Koehler, R., Schoenland, S., Groll, M., Buchner, J. | 1.55 | X-RAY DIFFRACTION | 0.165 | 0.142 | false | true | null | IGLV2 | Lambda | null | null | null | null | null |
2r6p | D | E | 0 | A | protein | null | major envelope protein e | Virus/Immune System | 09/06/07 | Fit of E protein and Fab 1A1D-2 into 24 angstrom resolution cryoEM map of Fab complexed with dengue 2 virus. | DENGUE VIRUS 2 PUERTO RICO/PR159-S1/1969; MUS MUSCULUS | mus musculus | mus musculus | dengue virus 2 puerto rico/pr159-s1/1969 | Lok, S.M., Kostyuchenko, V.K., Holdaway, H.A., Chipman, P.R., Kuhn, R.J, Rossmann, M.G | 24 | ELECTRON MICROSCOPY | null | null | false | true | IGHV14 | IGKV3 | Kappa | null | null | null | null | null |
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