pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7mnm | K | M | 0 | B | protein | null | e3 sumo-protein ligase ranbp2 | TRANSPORT PROTEIN/Immune System | 05/01/21 | Crystal structure of the N-terminal domain of NUP358/RanBP2 (residues 1-752) T585M mutant in complex with Fab fragment | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Bley, C.J., Nie, S., Mobbs, G.W., Petrovic, S., Gres, A.T., Liu, X., Mukherjee, S., Harvey, S., Huber, F.M., Lin, D.H., Brown, B., Tang, A.W., Rundlet, E.J., Correia, A.R., Chen, S., Regmi, S.G., Stevens, T.A., Jette, C.A., Dasso, M., Patke, A., Palazzo, A.F., Kossiakoff, A.A., Hoelz, A. | 4.7 | X-RAY DIFFRACTION | 0.254 | 0.204 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4xpf | H | L | 0 | A | protein | null | dopamine transporter-protein | transport protein/inhibitor | 01/16/15 | X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) bound to RTI-55 | MUS MUSCULUS; DROSOPHILA MELANOGASTER | mus musculus | mus musculus | drosophila melanogaster | Penmatsa, A., Wang, K.H., Gouaux, E. | 3.273 | X-RAY DIFFRACTION | 0.296 | 0.241 | false | true | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
6h7j | D | null | 0 | B | protein | null | beta-1 adrenergic receptor | IMMUNE SYSTEM | 07/31/18 | ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST ISOPRENALINE AND NANOBODY Nb80 | ESCHERICHIA COLI (STRAIN K12); MELEAGRIS GALLOPAVO; LAMA GLAMA | lama glama | null | meleagris gallopavo | Warne, T., Edwards, P.C., Dore, A.S., Leslie, A.G.W., Tate, c.g. | 2.8 | X-RAY DIFFRACTION | 0.317 | 0.285 | false | true | IGHV1 | null | null | null | null | null | null | null |
7kc9 | F | null | 0 | E | D | protein | protein | NA | NA | ricin chain b | ricin chain a | TOXIN | 10/05/20 | Ricin bound to VHH antibody V5G1 | VICUGNA PACOS; RICINUS COMMUNIS | vicugna pacos | null | ricinus communis | ricinus communis | Rudolph, M.J. | 2.301 | X-RAY DIFFRACTION | 0.238 | 0.187 | false | true | IGHV1 | null | null | null | null | null | null | null |
3csy | C | D | 0 | N | M | protein | protein | NA | NA | envelope glycoprotein gp2 | envelope glycoprotein gp1 | IMMUNE SYSTEM/VIRAL PROTEIN | 04/10/08 | Crystal structure of the trimeric prefusion Ebola virus glycoprotein in complex with a neutralizing antibody from a human survivor | HOMO SAPIENS; ZAIRE EBOLA VIRUS | homo sapiens | homo sapiens | zaire ebola virus | zaire ebola virus | Lee, J.E., Fusco, M.L., Hessell, A.J., Oswald, W.B., Burton, D.R., Saphire, E.O. | 3.4 | X-RAY DIFFRACTION | 0.302 | 0.261 | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
5tlk | H | G | 0 | Y | protein | null | cd27 antigen | IMMUNE SYSTEM | 10/11/16 | COMPLEX BETWEEN HUMAN CD27 AND FAB FRAGMENTS OF ANTIBODIES M2177 AND H2191 | HOMO SAPIENS; MUS MUSCULUS, HOMO SAPIENS | mus musculus, homo sapiens | mus musculus, homo sapiens | homo sapiens | Teplyakov, A., Obmolova, G., Malia, T., Gilliland, G.L. | 2.7 | X-RAY DIFFRACTION | 0.263 | 0.213 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
1jtp | A | null | 0 | L | protein | null | lysozyme c | Antibody, Hydrolase | 08/21/01 | Degenerate interfaces in antigen-antibody complexes | CAMELUS DROMEDARIUS; MELEAGRIS GALLOPAVO | camelus dromedarius | null | meleagris gallopavo | Decanniere, K., Transue, T.R., Desmyter, A., Maes, D., Muyldermans, S., Wyns, L. | 1.9 | X-RAY DIFFRACTION | 0.229 | 0.184 | false | true | IGHV1 | null | null | null | null | null | null | null |
1r70 | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 10/17/03 | Model of human IgA2 determined by solution scattering, curve fitting and homology modelling | HOMO SAPIENS | homo sapiens | homo sapiens | null | Furtado, P.B., Whitty, P.W., Robertson, A., Eaton, J.T., Almogren, A., Kerr, M.A., Woof, J.M., Perkins, S.J. | 30.0 | SOLUTION SCATTERING / HOMOLOGY MODEL | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
4ojf | H | L | 0 | A | peptide | null | amyloid beta a4 protein | Immune System | 01/21/14 | Humanised 3D6 Fab complexed to amyloid beta 1-8 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Miles, L.A., Crespi, G.A.N., Parker, M.W. | 1.998 | X-RAY DIFFRACTION | 0.215 | 0.172 | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
2ltq | F | E | 1 | D | protein | null | disulfide bond formation protein b | MEMBRANE PROTEIN, OXIDOREDUCTASE | 05/30/12 | High resolution structure of DsbB C41S by joint calculation with solid-state NMR and X-ray data | ESCHERICHIA COLI; MUS MUSCULUS | mus musculus | mus musculus | escherichia coli | Tang, M., Sperling, L.J., Schwieters, C.D., Nesbitt, A.E., Gennis, R.B., Rienstra, C.M. | NOT | SOLID-STATE NMR | null | null | false | false | IGHV5 | IGKV8 | Kappa | null | null | null | null | null |
5jsa | A | B | 0 | C | protein | null | gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 05/07/16 | Uncleaved prefusion optimized gp140 trimer with an engineered 10-residue HR1 turn bound to broadly neutralizing antibodies 8ANC195 and PGT128 | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Kong, L., Wilson, I.A. | 6.308 | X-RAY DIFFRACTION | 0.322 | 0.281 | false | true | unknown | IGLV2 | Lambda | null | null | null | null | null |
3pnw | E | D | 0 | F | protein | null | tudor domain-containing protein 3 | PROTEIN BINDING/IMMUNE SYSTEM | 11/19/10 | Crystal Structure of the tudor domain of human TDRD3 in complex with an anti-TDRD3 FAB | HOMO SAPIENS, SYNTHETIC CONSTRUCT; HOMO SAPIENS | synthetic | synthetic | homo sapiens | Loppnau, P., Tempel, W., Wernimont, A.K., Lam, R., Ravichandran, M., Adams-Cioaba, M.A., Persson, H., Sidhu, S.S., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Cossar, D., Structural Genomics Consortium (SGC) | 2.05 | X-RAY DIFFRACTION | 0.264 | 0.223 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
3juy | E | e | 0 | null | null | null | null | IMMUNE SYSTEM | 09/15/09 | Crystal Structure of a 3B3 Variant, a Broadly Neutralizing HIV-1 scFv Antibody | HOMO SAPIENS | homo sapiens | null | null | Clark, K.R., Walsh, S.T. | 2.5 | X-RAY DIFFRACTION | 0.260 | 0.195 | true | true | unknown | unknown | unknown | null | null | null | null | null |
1i9r | H | L | 0 | A | protein | null | cd40 ligand | CYTOKINE/IMMUNE SYSTEM | 03/20/01 | STRUCTURE OF CD40L IN COMPLEX WITH THE FAB FRAGMENT OF HUMANIZED 5C8 ANTIBODY | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Karpusas, M., Lucci, J., Ferrant, J., Benjamin, C., Hsu, Y.-M. | 3.1 | X-RAY DIFFRACTION | 0.285 | 0.233 | false | false | IGHV1 | IGKV3D | Kappa | null | null | null | null | null |
3et9 | F | f | 0 | null | null | null | null | IMMUNE SYSTEM | 10/07/08 | Crystal structure of the engineered neutralizing antibody 1H | MUS MUSCULUS | mus musculus | null | null | Leysath, C.E., Monzingo, A.F., Barnett, J., Iverson, B.L., Georgiou, G., Robertus, J.D. | 2.8 | X-RAY DIFFRACTION | 0.255 | 0.217 | true | true | unknown | unknown | unknown | null | null | null | null | null |
2dlf | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 12/17/98 | HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75 | MUS MUSCULUS | mus musculus | mus musculus | null | Nakasako, M., Takahashi, H., Shimada, I., Arata, Y. | 1.55 | X-RAY DIFFRACTION | 0.233 | 0.184 | false | false | IGHV6 | IGKV1 | Kappa | null | null | null | null | null |
1ct8 | B | A | 0 | D | Hapten | TAA | [4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]-PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY-ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)-PROPYL] ESTER | IMMUNE SYSTEM | 08/20/99 | CATALYTIC ANTIBODY 7C8 COMPLEX | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Gigant, B., Tsumuraya, T., Fujii, I., Knossow, M. | 2.2 | X-RAY DIFFRACTION | 0.275 | 0.211 | false | false | IGHV1 | IGKV5 | Kappa | 0 | -8.898799 | Unknown | null | TBD |
3mbx | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 03/26/10 | Crystal structure of chimeric antibody X836 | MUS MUSCULUS; MUS MUSCULUS, HOMO SAPIENS | mus musculus, homo sapiens | mus musculus | null | Teplyakov, A., Obmolova, G., Gilliland, G.L. | 1.6 | X-RAY DIFFRACTION | 0.232 | 0.210 | false | true | IGHV8 | IGKV8 | Kappa | null | null | null | null | null |
3chn | C | O | 1 | null | null | null | null | IMMUNE SYSTEM | 03/10/08 | Solution structure of human secretory IgA1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Almogren, A., Furtado, P.B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING / HOMOLOGY MODEL | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6mph | g | i | 0 | B | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 10/06/18 | Cryo-EM structure at 3.8 A resolution of HIV-1 fusion peptide-directed antibody, DF1W-a.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122 | MACACA MULATTA; HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Acharya, P., Xu, K., Kwong, P.D. | 3.8 | ELECTRON MICROSCOPY | null | null | false | false | unknown | IGKV3 | Kappa | null | null | null | null | null |
1ruq | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 12/11/03 | Crystal Structure (H) of u.v.-irradiated Diels-Alder antibody 13G5 Fab at pH 8.0 with a data set collected in house. | MUS MUSCULUS | mus musculus | mus musculus | null | Zhu, X., Wentworth Jr., P., Wentworth, A.D., Eschenmoser, A., Lerner, R.A., Wilson, I.A. | 1.86 | X-RAY DIFFRACTION | 0.256 | 0.219 | false | false | IGHV1 | IGKV2 | Kappa | null | null | null | null | null |
7zmn | C | null | 0 | A | protein | null | atp-dependent dna helicase q5 | HYDROLASE | 04/19/22 | Crystal structure of human RECQL5 helicase APO form in complex with engineered nanobody (Gluebody) G3-048 | Homo sapiens; Lama glama | lama glama | null | homo sapiens | Ye, M., Makola, M., Newman, J.A., Fairhead, M., MacLean, E., Krojer, T., Aitkenhead, H., Bountra, C., Gileadi, O., von Delft, F. | 3.2 | X-RAY DIFFRACTION | 0.275 | 0.242 | false | true | IGHV1 | null | null | null | null | null | null | null |
3ze2 | H | L | 0 | C | protein | null | integrin alpha-iib | CELL ADHESION/IMMUNE SYSTEM/PEPTIDE | 12/03/12 | Integrin alphaIIB beta3 headpiece and RGD peptide complex | HOMO SAPIENS; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Zhu, J.H., Zhu, J.Q., Springer, T.A. | 2.35 | X-RAY DIFFRACTION | 0.2037 | 0.1753 | false | true | IGHV14 | IGKV14 | Kappa | null | null | null | null | null |
6mlk | H | L | 0 | A | protein | null | 6-deoxyerythronolide-b synthase erya3, modules 5 and 6 | TRANSFERASE | 09/27/18 | Structure of Thioesterase from DEBS with a thioesterase-specific antibody | SACCHAROPOLYSPORA ERYTHRAEA; HOMO SAPIENS | homo sapiens | homo sapiens | saccharopolyspora erythraea | Mathews, I.I., Li, X., Khosla, C. | 2.45 | X-RAY DIFFRACTION | 0.235 | 0.175 | false | true | IGHV4 | IGKV2 | Kappa | 0 | -10.758506 | SPR | null | TBD |
1jgu | H | L | 0 | H | Hapten | HBC | (2-AMINO-3-PHENYL-BICYCLO[2.2.1]HEPT-2-YL)-PHENYL-METHANONE | IMMUNE SYSTEM | 06/26/01 | STRUCTURAL BASIS FOR DISFAVORED ELIMINATION REACTION IN CATALYTIC ANTIBODY 1D4 | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Larsen, N.A., Heine, A., Crane, L., Cravatt, B.F., Lerner, R.A., Wilson, I.A. | 1.8 | X-RAY DIFFRACTION | 0.229 | 0.209 | false | false | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
7wsi | H | L | 0 | A | protein | null | sodium/bile acid cotransporter | TRANSPORT PROTEIN | 01/29/22 | Cryo-EM structure of human NTCP (wild-type) complexed with YN69202Fab | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Asami, J., Shimizu, T., Ohto, U. | 3.32 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
7bg1 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 01/05/21 | Structure of anti-FLAG M2 Fab domain remodeled based on proteomic sequencing | MUS MUSCULUS | mus musculus | mus musculus | null | Pronker, M.F., Snijder, J. | 1.86 | X-RAY DIFFRACTION | 0.255 | 0.217 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
3cdy | null | B | 0 | null | null | null | null | IMMUNE SYSTEM | 02/27/08 | AL-09 H87Y, immuglobulin light chain variable domain | HOMO SAPIENS | null | homo sapiens | null | Baden, E.M., Randles, E.G., Aboagye, A.K., Thompson, J.R., Ramirez-Alvarado, M. | 2.43 | X-RAY DIFFRACTION | 0.263 | 0.189 | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
7lsi | B | D | 0 | null | null | null | null | ANTITUMOR PROTEIN,IMMUNE SYSTEM | 02/18/21 | Structure of KD035, a VEGFR2 monoclonal antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Depetris, R.S. | 2.4 | X-RAY DIFFRACTION | 0.274 | 0.197 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
7qia | C | null | 0 | A | protein | null | divalent metal cation transporter | MEMBRANE PROTEIN | 12/14/21 | Structure of apo-EleNRMT in complex with two nanobodies at 3.5A | EGGERTHELLA LENTA; SYNTHETIC CONSTRUCT | synthetic construct | null | eggerthella lenta | Ramanadane, K., Straub, M.S., Dutzler, R., Manatschal, C. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
1h8s | A | a | 0 | a | Hapten | AIC | (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID | ANTI-AMPICILLIN ANTIBODIES | 02/15/01 | Three-dimensional structure of anti-ampicillin single chain Fv fragment complexed with the hapten. | MUS MUSCULUS | mus musculus | null | null | Burmester, J., Spinelli, S., Pugliese, L., Krebber, A., Honegger, A., Jung, S., Schimmele, B., Cambillau, C., Plucktun, A. | 2.4 | X-RAY DIFFRACTION | 0.273 | 0.204 | true | true | unknown | unknown | unknown | 0.000002 | -7.929641 | Unknown | null | TBD |
7kqh | C | D | 0 | A | protein | null | hemagglutinin | IMMUNE SYSTEM/VIRAL PROTEIN | 11/16/20 | Antibodies that engage the hemagglutinin receptor-binding site of influenza B viruses | INFLUENZA B VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza b virus | Bajic, G., Harrison, S.C. | 3.5 | X-RAY DIFFRACTION | 0.300 | 0.252 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7ew5 | N | O | 0 | J | protein | null | light chain of 13h5 | VIRAL PROTEIN | 05/24/21 | immune complex of HPV6 L1 pentamer and neutralizing antibody 13H5 | HUMAN PAPILLOMAVIRUS TYPE 6; MUS MUSCULUS | mus musculus | mus musculus | human papillomavirus type 6 | Wang, Z.P., Wang, D.N., Gu, Y., Li, S.W. | 3.606 | X-RAY DIFFRACTION | 0.293 | 0.252 | false | false | IGHV14 | IGKV6 | Kappa | null | null | null | null | null |
5h37 | G | H | 0 | A | protein | null | structural protein e | VIRUS/IMMUNE SYSTEM | 10/20/16 | Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0 | HOMO SAPIENS; ZIKA VIRUS | homo sapiens | homo sapiens | zika virus | Zhang, S., Kostyuchenko, V., Ng, T.-S., Lim, X.-N., Ooi, J.S.G., Lambert, S., Tan, T.Y., Widman, D., Shi, J., Baric, R.S., Lok, S.-M. | 4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
2w0k | null | B | 0 | null | null | null | null | IMMUNE SYSTEM | 08/19/08 | Crystal structure of the recombinant variable domain 6JAL2 | HOMO SAPIENS | null | homo sapiens | null | Rudino-Pinera, E., Gonzalezrubio-Garrido, P., Horjales, E. | 2.35 | X-RAY DIFFRACTION | 0.242 | 0.209 | false | false | null | IGLV6 | Lambda | null | null | null | null | null |
6ieq | H | L | 0 | G | protein | null | envelope glycoprotein gp160 | VIRAL PROTEIN | 09/16/18 | Crystal Structure of HIV-1 Env ConM SOSIP.v7 in Complex with bNAb PGT124 and 35O22 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Han, B.W., Wilson, I.A. | 3.9 | X-RAY DIFFRACTION | 0.296 | 0.247 | false | true | IGHV4 | unknown | unknown | null | null | null | null | null |
7qn5 | G | null | 0 | D | protein | null | gamma-aminobutyric acid receptor subunit beta-3 | MEMBRANE PROTEIN | 12/20/21 | Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with nanobody Nb25 | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Sente, A., Desai, R., Naydenova, K., Malinauskas, T., Jounaidi, Y., Miehling, J., Zhou, X., Masiulis, S., Hardwick, S.W., Chirgadze, D.Y., Miller, K.W., Aricescu, A.R. | 2.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6mw9 | G | H | 0 | F | protein | null | e2 | VIRUS/IMMUNE SYSTEM | 10/29/18 | CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-3 antibody | EASTERN EQUINE ENCEPHALITIS VIRUS; MUS MUSCULUS | mus musculus | mus musculus | eastern equine encephalitis virus | Hasan, S.S., Sun, C., Kim, A.S., Watanabe, Y., Chen, C.L., Klose, T., Buda, G., Crispin, M., Diamond, M.S., Klimstra, W.B., Rossmann, M.G. | 7.3 | ELECTRON MICROSCOPY | null | null | false | false | IGHV9 | IGLV1 | Lambda | null | null | null | null | null |
7ejy | H | L | 0 | R | protein | null | spike protein s1 | VIRAL PROTEIN/IMMUNE SYSTEM | 04/03/21 | Complex Structure of antibody BD-503 and RBD of COVID-19 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Xu, H., Wang, B., Zhao, T.N., Su, X.D. | 3.04 | X-RAY DIFFRACTION | 0.254 | 0.214 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6tys | F | G | 0 | E | protein | null | fusion glycoprotein f0 | VIRAL PROTEIN/IMMUNE SYSTEM | 08/09/19 | A potent cross-neutralizing antibody targeting the fusion glycoprotein inhibits Nipah virus and Hendra virus infection | NIPAH VIRUS; MUS MUSCULUS | mus musculus | mus musculus | nipah virus | Dang, H.V., Chan, Y.P., Park, Y.J., Snijder, J., Da Silva, S.C., Vu, B., Yan, L., Feng, Y.R., Rockx, B., Geisbert, T., Mire, C.E., Broder, C.B., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGKV12 | Kappa | null | null | null | null | null |
2x7l | C | D | 0 | P | protein | null | hiv rev | IMMUNE SYSTEM | 03/01/10 | Implications of the HIV-1 Rev dimer structure at 3.2A resolution for multimeric binding to the Rev response element | UNCLASSIFIED; HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 BH10 | unclassified | unclassified | human immunodeficiency virus type 3 | DiMattia, M.A., Watts, N.R., Stahl, S.J., Rader, C., Wingfield, P.T., Stuart, D.I., Steven, A.C., Grimes, J.M. | 3.17 | X-RAY DIFFRACTION | 0.2500 | 0.2337 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6d11 | C | D | 0 | E | peptide | null | nanp5 | IMMUNE SYSTEM | 04/11/18 | Crystal structure of 1450 Fab in complex with circumsporozoite protein NANP5 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | plasmodium falciparum | Scally, S.W., Bosch, A., Imkeller, K., Wardemann, H., Julien, J.P. | 3.4 | X-RAY DIFFRACTION | 0.299 | 0.254 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5hvf | B | null | 0 | A | protein | null | carboxypeptidase b2 | hydrolase/hydrolase inhibitor | 01/28/16 | Crystal Structure of Thrombin-activatable Fibrinolysis Inhibitor in Complex with an Inhibitory Nanobody (VHH-i83) | VICUGNA PACOS; HOMO SAPIENS | vicugna pacos | null | homo sapiens | Zhou, X., Weeks, S.D., Strelkov, S.V., Declerck, P.J. | 2.85 | X-RAY DIFFRACTION | 0.230 | 0.192 | false | true | IGHV1 | null | null | 0 | -14.355775 | SPR | null | TBD |
7l6v | F | null | 0 | A | protein | null | bont/a | ANTITOXIN | 12/24/20 | Crystal structure of BoNT/A-LC-JPU-A5-JPU-C1-JPU-H7-JPU-D12-ciA-F12 | CLOSTRIDIUM BOTULINUM; VICUGNA PACOS | vicugna pacos | null | clostridium botulinum | Lam, K., Jin, R. | 2.01 | X-RAY DIFFRACTION | 0.234 | 0.197 | false | true | IGHV1 | null | null | null | null | null | null | null |
3chn | D | N | 3 | null | null | null | null | IMMUNE SYSTEM | 03/10/08 | Solution structure of human secretory IgA1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Almogren, A., Furtado, P.B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING / HOMOLOGY MODEL | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
2kh2 | B | b | 8 | A | protein | null | interleukin-1 beta | Cytokine/IMMUNE SYSTEM | 03/23/09 | Solution structure of a scFv-IL-1B complex | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | Wilkinson, I.C., Hall, C.J., Veverka, V., Muskett, F.W., Stephens, P.E., Taylor, R.J., Henry, A.J., Carr, M.D. | NOT | SOLUTION NMR | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
5ken | N | O | 0 | M | protein | null | ebola surface glycoprotein, gp2 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/09/16 | EBOV GP in complex with variable Fab domains of IgGs c4G7 and c13C6 | HOMO SAPIENS; ZAIRE EBOLAVIRUS (STRAIN MAYINGA-76); ZAIRE EBOLAVIRUS | homo sapiens | homo sapiens | zaire ebolavirus (strain mayinga-76) | Pallesen, J., Murin, C.D., de Val, N., Cottrell, C.A., Hastie, K.M., Turner, H.L., Fusco, M.L., Flyak, A.I., Zeitlin, L., Crowe Jr., J.E., Andersen, K.G., Saphire, E.O., Ward, A.B. | 4.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV12 | Kappa | null | null | null | null | null |
4why | K | L | 0 | C | peptide | null | epitope peptide | VIRAL PROTEIN | 09/24/14 | Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the broadly neutralizing antibody 3/11, P21 crystal form | RATTUS NORVEGICUS; SYNTHETIC CONSTRUCT | rattus norvegicus | rattus norvegicus | hepatitis c virus | Krey, T., Rey, F.A. | 2.62 | X-RAY DIFFRACTION | 0.258 | 0.204 | false | true | IGHV5 | IGKV2 | Kappa | 0 | -11.053614 | Unknown | null | TBD |
1plg | H | L | 0 | null | null | null | null | IMMUNOGLOBULIN | 04/24/95 | EVIDENCE FOR THE EXTENDED HELICAL NATURE OF POLYSACCHARIDE EPITOPES. THE 2.8 ANGSTROMS RESOLUTION STRUCTURE AND THERMODYNAMICS OF LIGAND BINDING OF AN ANTIGEN BINDING FRAGMENT SPECIFIC FOR ALPHA-(2->8)-POLYSIALIC ACID | MUS MUSCULUS | mus musculus | mus musculus | null | Evans, S.V., Sigurskjold, B.W., Jennings, H.J., Brisson, J.-R., Tse, W.C., To, R., Altman, E., Frosch, M., Weisgerber, C., Kratzin, H., Klebert, S., Vaesen, M., Bitter-Suermann, D., Rose, D.R., Young, N.M., Bundle, D.R. | 2.8 | X-RAY DIFFRACTION | unknown | 0.164 | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6f7t | B | A | 0 | D | peptide | null | ribonuclease y | IMMUNE SYSTEM | 12/11/17 | Crystal Structure of an Fab fragment in complex with a peptide from Bacillus subtilis RNase Y | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | bacillus subtilis | Golinelli-Pimpaneau, B., Hardouin, P. | 2.6 | X-RAY DIFFRACTION | 0.253 | 0.202 | false | false | IGHV9 | IGLV3 | Lambda | 0 | -12.883508 | Unknown | null | TBD |
7tus | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 02/03/22 | Sculpting a uniquely reactive cysteine residue for site-specific antibody conjugation | HOMO SAPIENS | homo sapiens | homo sapiens | null | Park, H., Rader, C. | 2.4 | X-RAY DIFFRACTION | 0.257 | 0.218 | false | true | IGHV6 | IGKV1 | Kappa | null | null | null | null | null |
7o85 | null | H | 0 | G | I | protein | protein | NA | NA | protective antigen pa-63 | fab | TOXIN | 04/14/21 | Anthrax toxin prepore in complex with the neutralizing Fab cAb29 | BACILLUS ANTHRACIS; MUS MUSCULUS | null | mus musculus | bacillus anthracis | mus musculus | Hoelzgen, F., Zalk, R., Alcalay, R., Cohen-Schwartz, S., Garau, G., Shahar, A., Mazor, O., Frank, G.A. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
5f3h | A | B | 0 | J | protein | null | growth/differentiation factor 8 | Signaling Protein/Immune System | 12/02/15 | Structure of myostatin in complex with humanized RK35 antibody | MUS MUSCULUS; HOMO SAPIENS | mus musculus | mus musculus | homo sapiens | Parris, K.D., Mosyak, L. | 2.7 | X-RAY DIFFRACTION | 0.270 | 0.218 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6j71 | B | b | 0 | A | protein | null | receptor tyrosine-protein kinase erbb-2 | SIGNALING PROTEIN | 01/16/19 | HuA21-scFv in complex with the extracellular domain(ECD) of HER2 | HOMO SAPIENS; MURINE ADENOVIRUS 1 | murine adenovirus 1 | null | homo sapiens | Wang, Z., Guo, G., Cheng, B., Zhu, Z., Niu, L., Zhang, H. | 2.918 | X-RAY DIFFRACTION | 0.267 | 0.208 | true | true | unknown | unknown | unknown | null | null | null | null | null |
3cdy | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 02/27/08 | AL-09 H87Y, immuglobulin light chain variable domain | HOMO SAPIENS | null | homo sapiens | null | Baden, E.M., Randles, E.G., Aboagye, A.K., Thompson, J.R., Ramirez-Alvarado, M. | 2.43 | X-RAY DIFFRACTION | 0.263 | 0.189 | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
1g9e | A | null | 19 | null | null | null | null | IMMUNE SYSTEM | 11/23/00 | SOLUTION STRUCTURE AND RELAXATION MEASUREMENTS OF AN ANTIGEN-FREE HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA | LAMA GLAMA | lama glama | null | null | Renisio, J.-G., Perez, J., Czisch, M., Guenneugues, M., Bornet, O., Frenken, L., Cambillau, C., Darbon, H. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6dzz | B | C | 0 | A | protein | null | sodium-dependent serotonin transporter | TRANSPORT PROTEIN/IMMUNE SYSTEM | 07/05/18 | Cryo-EM Structure of the wild-type human serotonin transporter in complex with ibogaine and 15B8 Fab in the inward conformation | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Yang, D., Coleman, J.A., Gouaux, E. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4nrx | A | B | 0 | C | peptide | null | envelope glycoprotein gp41 | IMMUNE SYSTEM | 11/27/13 | Crystal Structure of HIV-1 Neutralizing Antibody m66 in complex with gp41 MPER peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Ofek, G., Yang, Y., Kwong, P.D. | 2.21 | X-RAY DIFFRACTION | 0.215 | 0.188 | false | true | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
5uk1 | G | g | 0 | A | protein | null | hemagglutinin ha1 | VIRAL PROTEIN/IMMUNE SYSTEM | 01/19/17 | CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3 | HOMO SAPIENS; INFLUENZA A VIRUS (A/SOLOMON ISLANDS/3/2006(H1N1)); INFLUENZA A VIRUS | homo sapiens | null | influenza a virus (a/solomonislands/3/2006(h1n1)) | Liu, Y., Pan, J., Caradonna, T., Jenni, S., Raymond, D.D., Schmidt, A.G., Harrison, S.C., Grigorieff, N. | 4.8 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
5u3k | H | L | 0 | P | peptide | null | gp41 mper peptide | IMMUNE SYSTEM/VIRAL PROTEIN | 12/02/16 | Crystal Structure of DH511.2 Fab in Complex with HIV-1 gp41 MPER 662-683 Peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Ofek, G., Wu, L., Lougheed, C.S., Williams, L.D., Nicely, N.I., Haynes, B.F. | 2.637 | X-RAY DIFFRACTION | 0.283 | 0.232 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2vir | B | A | 0 | C | protein | null | hemagglutinin | COMPLEX (HEMAGGLUTININ/IMMUNOGLOBULIN) | 12/22/97 | INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY | INFLUENZA A VIRUS (A/X-31(H3N2)); MUS MUSCULUS | mus musculus | mus musculus | influenza a virus (a/x-31(h3n2)) | Bizebard, T., Fleury, D., Gigant, B., Wharton, S.A., Skehel, J.J., Knossow, M. | 3.25 | X-RAY DIFFRACTION | 0.249 | 0.198 | false | false | IGHV2 | IGLV1 | Lambda | 0 | -12.27 | Other | 25 | 9461077 |
6ru5 | C | null | 0 | B | A | protein | protein | NA | NA | complement c3 | complement c3 | IMMUNE SYSTEM | 05/27/19 | human complement C3 in complex with the hC3Nb1 nanobody | LAMA GLAMA; HOMO SAPIENS | lama glama | null | homo sapiens | homo sapiens | Jensen, R.K., Andersen, G.R. | 3.9 | X-RAY DIFFRACTION | unknown | unknown | false | true | IGHV1 | null | null | null | null | null | null | null |
7wpd | X | Y | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 01/23/22 | SARS-CoV-2 Omicron Variant S Trimer complexed with one JMB2002 Fab | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; MUS MUSCULUS; LAMA GLAMA | mus musculus | mus musculus | severe acute respiratory syndrome coronavirus2 | Yin, W., Xu, Y., Xu, P., Cao, X., Wu, C., Gu, C., He, X., Wang, X., Huang, S., Yuan, Q., Wu, K., Hu, W., Huang, Z., Liu, J., Wang, Z., Jia, F., Xia, K., Liu, P., Wang, X., Song, B., Zheng, J., Jiang, H., Cheng, X., Jiang, Y., Deng, S.J., Xu, H.E. | 3.18 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7pi2 | B | C | 0 | A | protein | null | cysteine-rich protective antigen | IMMUNE SYSTEM | 08/19/21 | PfCyRPA bound to monoclonal antibody Cy.003 Fab fragment | PLASMODIUM FALCIPARUM (ISOLATE 3D7); GALLUS GALLUS | gallus gallus | gallus gallus | plasmodium falciparum (isolate 3d7) | Ragotte, R.J., Higgins, M.K. | 3.14 | X-RAY DIFFRACTION | 0.239 | 0.219 | false | true | unknown | unknown | unknown | null | null | null | null | null |
7zmq | K | null | 0 | A | protein | null | atp-dependent dna helicase q5 | HYDROLASE | 04/19/22 | Crystal structure of human RECQL5 helicase APO form in complex with engineered nanobody (Gluebody) G2*-006 | Homo sapiens; Lama glama | lama glama | null | homo sapiens | Ye, M., Makola, M., Newman, J.A., Fairhead, M., MacLean, E., Krojer, T., Aitkenhead, H., Bountra, C., Gileadi, O., von Delft, F. | 2.7 | X-RAY DIFFRACTION | 0.258 | 0.225 | false | true | IGHV1 | null | null | null | null | null | null | null |
7ndb | H | L | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN, IMMUNE SYSTEM | 01/30/21 | EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-253H165L Fab | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D. | 4.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6qn8 | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 02/10/19 | Structure of bovine anti-RSV Fab B13 | BOS TAURUS | bos taurus | bos taurus | null | Ren, J., Nettleship, J.E., Harris, G., Mwangi, W., Rhaman, N., Grant, C., Kotecha, A., Fry, E., Charleston, B., Stuart, D.I., Hammond, J., Owens, R.J. | 2.12 | X-RAY DIFFRACTION | 0.267 | 0.235 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
6knm | A | null | 0 | B | protein | null | apelin receptor,rubredoxin,apelin receptor | MEMBRANE PROTEIN | 08/06/19 | Apelin receptor in complex with single domain antibody | HOMO SAPIENS; CLOSTRIDIUM PASTEURIANUM; CAMELUS BACTRIANUS | camelus bactrianus | null | homo sapiens, clostridium pasteurianum | Ma, Y.B., Ding, Y., Song, X., Ma, X., Li, X., Zhang, N., Song, Y., Sun, Y., Shen, Y., Zhong, W., Hu, L.A., Ma, Y.L., Zhang, M.Y. | 3.2 | X-RAY DIFFRACTION | 0.305 | 0.258 | false | true | IGHV1 | null | null | null | null | null | null | null |
7nk4 | F | null | 0 | A | protein | null | polymerase acidic protein | VIRAL PROTEIN | 02/17/21 | 1918 H1N1 Viral influenza polymerase heterotrimer with Nb8203 core | INFLUENZA A VIRUS (A/BREVIG MISSION/1/1918(H1N1)); INFLUENZA A VIRUS (STRAIN A/BREVIG MISSION/1/1918 H1N1); CAMELIDAE MIXED LIBRARY; SYNTHETIC CONSTRUCT | camelidae mixed library | null | influenza a virus (a/brevigmission/1/1918(h1n1)) | Keown, J.R., Carrique, L., Fodor, E., Grimes, J.M. | 5.32 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6opa | K | J | 0 | G | protein | null | envelope glycoprotein gp160 | IMMUNE SYSTEM | 04/01/20 | Crystal structure of bovine Fab NC-Cow1 in complex with HIV-1 BG505 SOSIP.664, and human Fabs 35022 and PGT128 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Stanfield, R.L., Wilson, I.A. | 4.084 | X-RAY DIFFRACTION | 0.343 | 0.332 | false | true | unknown | IGLV2 | Lambda | null | null | null | null | null |
6o28 | A | B | 0 | E | peptide | null | circumsporozoite protein | IMMUNE SYSTEM | 02/22/19 | Crystal structure of 4493 Fab in complex with circumsporozoite protein KQPA and anti-kappa VHH domain | HOMO SAPIENS; LAMA GLAMA; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | plasmodium falciparum | Scally, S.W., Bosch, A., Prieto, K., Murugan, R., Wardemann, H., Julien, J.P. | 1.93 | X-RAY DIFFRACTION | 0.219 | 0.188 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
3cm9 | C | N | 4 | null | null | null | null | IMMUNE SYSTEM | 03/21/08 | Solution Structure of Human SIgA2 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Almogren, A., Furtado, P.B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6l98 | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 11/08/19 | Crystalline cast nephropathy-causing Bence-Jones protein AK: An entire immunoglobulin lambda light chain dimer | HOMO SAPIENS | null | homo sapiens | null | Nakagaki, T., Noguchi, K., Yohda, M., Odaka, M., Wakui, H., Matsumura, H. | 1.77 | X-RAY DIFFRACTION | 0.265 | 0.229 | false | true | null | IGLV3 | Lambda | null | null | null | null | null |
7te8 | A | null | 0 | C | Hapten | P0T | cannabidiol | BIOSYNTHETIC PROTEIN | 01/04/22 | CA14-CBD-DB21 ternary complex | ARTIFICIAL SEQUENCES | artificial sequences | null | artificial sequences | Cao, S., Zheng, N. | 1.998 | X-RAY DIFFRACTION | 0.211 | 0.180 | false | true | IGHV3 | null | null | null | null | null | null | null |
5mu2 | E | F | 0 | R | peptide | null | synthetic peptide containing the cii583-591 epitope ofcollagen type ii | IMMUNE SYSTEM | 01/12/17 | ACC1 Fab fragment in complex with CII583-591 (CG10) | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | mus musculus | Dobritzsch, D., Holmdahl, R., Ge, C. | 2.7 | X-RAY DIFFRACTION | 0.228 | 0.206 | false | false | IGHV6 | IGKV3 | Kappa | null | null | null | null | null |
7n0i | I | null | 0 | A | B | protein | protein | NA | NA | nucleoprotein | nucleoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 05/25/21 | Structure of the SARS-CoV-2 N protein C-terminal domain bound to single-domain antibody E2 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; LAMA GLAMA | lama glama | null | severe acute respiratory syndrome coronavirus2 | severe acute respiratory syndrome coronavirus2 | Ye, Q., Corbett, K.D. | 2.2 | X-RAY DIFFRACTION | 0.271 | 0.239 | false | true | IGHV1 | null | null | null | null | null | null | null |
6usf | K | M | 0 | A | protein | null | chimera of soluble cytochrome b562 (bril) and neuronalacetylcholine receptor subunit alpha-4 | MEMBRANE PROTEIN/IMMUNE SYSTEM | 10/26/19 | CryoEM structure of human alpha4beta2 nicotinic acetylcholine receptor with varenicline in complex with anti-BRIL synthetic antibody BAK5 | HOMO SAPIENS; ESCHERICHIA COLI | homo sapiens | homo sapiens | homo sapiens, escherichia coli | Alvarez, F.J.D., Mukherjee, S., Han, S., Ammirati, M., Kossiakoff, A.A. | 3.87 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6mxs | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 10/31/18 | Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98F,HC-G99M] | HOMO SAPIENS | homo sapiens | homo sapiens | null | Shi, R., Picard, M.-E., Manenda, M.S. | 1.95 | X-RAY DIFFRACTION | 0.229 | 0.191 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7rga | A | null | 0 | A | Hapten | MTX | METHOTREXATE | IMMUNE SYSTEM | 07/14/21 | Crystal structure of nanoCLAMP3:VHH in complex with MTX | NANOA | nanoa | null | nanoa | Guo, Z., Alexandrov, K. | 2.9 | X-RAY DIFFRACTION | 0.242 | 0.195 | false | true | IGHV1 | null | null | null | null | null | null | null |
6dzl | G | J | 0 | E | A | protein | protein | NA | NA | ebola virus makona gp2 | ebola virus makona gp1 | VIRAL PROTEIN | 07/05/18 | Ebola virus Makona variant GP (mucin-deleted) in complex with pan-ebolavirus human antibody ADI-15878 Fab | ZAIRE EBOLAVIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | zaire ebolavirus | zaire ebolavirus | Murin, C.D., Ward, A.B. | 4.14 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6vl9 | H | L | 0 | H | Hapten | 9FO | 3,6,9,12,15,18,21,24,27,30,33,36,39,42,45,48,51,54,57-nonadecaoxanonapentacontane-1,59-diol | IMMUNE SYSTEM | 01/23/20 | Anti-PEG antibody 6-3 Fab fragment in complex with PEG | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Nicely, N.I., Huckaby, J.T., Lai, S.K., Jacobs, T.M. | 2.63 | X-RAY DIFFRACTION | 0.250 | 0.178 | false | true | IGHV9 | IGKV8 | Kappa | null | null | null | null | null |
7pi3 | a | b | 0 | V | protein | null | cysteine-rich protective antigen | IMMUNE SYSTEM | 08/19/21 | PfCyRPA bound to Fab fragments from monoclonal antibodies Cy.003, Cy.004 and Cy.007 | PLASMODIUM FALCIPARUM 3D7; GALLUS GALLUS | gallus gallus | gallus gallus | plasmodium falciparum 3d7 | Ragotte, R.J., Higgins, M.K. | 3.269 | X-RAY DIFFRACTION | 0.298 | 0.285 | false | false | unknown | unknown | unknown | null | null | null | null | null |
7d0c | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 09/09/20 | S protein of SARS-CoV-2 in complex bound with P5A-3A1 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Yan, R.H., Wang, R.K., Yu, J.F., Zhang, Y.Y., Liu, N., Wang, H.W., Wang, X.Q., Zhang, L.Q., Zhou, Q. | 3.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
1tzh | H | L | 0 | V | protein | null | vascular endothelial growth factor a | immune system | 07/09/04 | Crystal Structure of the Fab YADS1 Complexed with h-VEGF | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Fellouse, F.A., Wiesmann, C., Sidhu, S.S. | 2.6 | X-RAY DIFFRACTION | 0.271 | 0.212 | false | true | IGHV5 | IGKV12 | Kappa | 0 | -12.4 | SPR | 37 | 15306681 |
6e3h | H | L | 0 | B | A | protein | protein | NA | NA | hemagglutinin ha2 | hemagglutinin ha1 | viral protein/immune system | 07/14/18 | Crystal structure of S9-3-37 bound to H5 influenza hemagglutinin | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Wu, N.C., Wilson, I.A. | 2.9 | X-RAY DIFFRACTION | 0.248 | 0.205 | false | true | IGHV1 | IGKV2 | Kappa | null | null | null | null | null |
4u7s | A | null | 0 | null | null | null | null | IMMUNE SYSTEM | 07/31/14 | Homodimeric Single Domain Antibody (sdAb) against Staphylococcal enterotoxin B (SEB) Crystallized for 5 months | LAMA GLAMA | lama glama | null | null | Legler, P.M. | 2.07 | X-RAY DIFFRACTION | 0.242 | 0.232 | false | true | IGHV1 | null | null | null | null | null | null | null |
1n6q | H | L | 0 | B | protein | null | reverse transcriptase | TRANSFERASE/IMMUNE SYSTEM/DNA | 11/11/02 | HIV-1 Reverse Transcriptase Crosslinked to pre-translocation AZTMP-terminated DNA (complex N) | HUMAN IMMUNODEFICIENCY VIRUS 1; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | human immunodeficiency virus 1 | Sarafianos, S.G., Clark Jr., A.D., Das, K., Tuske, S., Birktoft, J.J., Ilankumaran, I., Ramesha, A.R., Sayer, J.M., Jerina, D.M., Boyer, P.L., Hughes, S.H., Arnold, E. | 3.0 | X-RAY DIFFRACTION | 0.284 | 0.247 | false | false | IGHV8 | IGKV10 | Kappa | null | null | null | null | null |
4zso | B | A | 0 | E | protein | null | natural cytotoxicity triggering receptor 3 ligand 1 | IMMUNE SYSTEM | 05/13/15 | Crystal structure of a complex between B7-H6, a tumor cell ligand for natural cytotoxicity receptor NKp30, and an inhibitory antibody | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Xu, X., Li, Y., Mariuzza, R.A. | 2.5 | X-RAY DIFFRACTION | 0.257 | 0.226 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
7k8q | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 09/27/20 | Crystal structure of an anti-SARS-CoV-2 human neutralizing antibody Fab fragment, C110 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Abernathy, M.E., Barnes, C.O., Bjorkman, P.J. | 2.0 | X-RAY DIFFRACTION | 0.243 | 0.205 | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
3cfj | F | E | 0 | null | null | null | null | IMMUNE SYSTEM | 03/04/08 | Crystal structure of catalytic elimination antibody 34E4, orthorhombic crystal form | MUS MUSCULUS, HOMO SAPIENS | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Debler, E.W., Wilson, I.A. | 2.6 | X-RAY DIFFRACTION | 0.253 | 0.199 | false | true | IGHV4 | IGLV1 | Lambda | null | null | null | null | null |
6n51 | C | null | 0 | A | protein | null | metabotropic glutamate receptor 5 | MEMBRANE PROTEIN | 11/20/18 | Metabotropic Glutamate Receptor 5 bound to L-quisqualate and Nb43 | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Koehl, A., Hu, H., Feng, D., Sun, B., Weis, W.I., Skiniotis, G.S., Mathiesen, J.M., Kobilka, B.K. | 4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
4r96 | F | E | 0 | null | null | null | null | Immune System | 09/03/14 | Structure of a Llama Glama Fab 48A2 against human cMet | LLAMA GLAMA | lama glama | lama glama | null | Klarenbeek, A., El Mazouari, K., Desmyter, A., Blanchetot, C., Hultberg, A., Roovers, R.C., Cambillau, C., Spinelli, S., Del-Favero, J., Verrips, T., de Haard, H., Achour, I. | 3.31 | X-RAY DIFFRACTION | 0.261 | 0.217 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
4fqq | F | E | 0 | null | null | null | null | IMMUNE SYSTEM | 06/25/12 | Crystal Structure of Germline Antibody PGT121-GL Fab | HOMO SAPIENS | homo sapiens | homo sapiens | null | Scharf, L., Bjorkman, P.J. | 2.42 | X-RAY DIFFRACTION | 0.237 | 0.194 | false | true | IGHV4 | IGLV3 | Lambda | null | null | null | null | null |
7nxb | A | B | 0 | E | protein | null | spike protein s1 | VIRAL PROTEIN/IMMUNE SYSTEM | 03/17/21 | Crystal structure of the receptor binding domain of SARS-CoV-2 P.1 variant Spike glycoprotein in complex with COVOX-222 and EY6A Fabs | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Ren, J., Stuart, D. | 2.67 | X-RAY DIFFRACTION | 0.246 | 0.213 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7lpn | H | null | 0 | G | protein | null | envelope glycoprotein gp160 | VIRAL PROTEIN | 02/12/21 | Cryo-EM structure of llama J3 VHH antibody in complex with HIV-1 Env BG505 DS-SOSIP.664 | HUMAN IMMUNODEFICIENCY VIRUS 1; LAMA GLAMA | lama glama | null | human immunodeficiency virus 1 | Gorman, J., Kwong, P.D. | 3.61 | ELECTRON MICROSCOPY | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
2ht4 | E | F | 0 | B | protein | null | h(+)/cl(-) exchange transporter clca | MEMBRANE PROTEIN | 07/25/06 | Structure of the Escherichia coli ClC chloride channel Y445W mutant and Fab complex | ESCHERICHIA COLI; MUS MUSCULUS | mus musculus | mus musculus | escherichia coli | Accardi, A., Lobet, S., Williams, C., Miller, C., Dutzler, R. | 3.2 | X-RAY DIFFRACTION | 0.261 | 0.239 | false | false | IGHV4 | IGKV4 | Kappa | null | null | null | null | null |
2gjj | b | B | 0 | null | null | null | null | IMMUNE SYSTEM | 03/31/06 | Crystal structure of a single chain antibody scA21 against Her2/ErbB2 | MUS MUSCULUS | null | mus musculus | null | Zhu, Z. | 2.1 | X-RAY DIFFRACTION | 0.226 | 0.189 | true | true | unknown | unknown | unknown | null | null | null | null | null |
5npj | B | b | 0 | E | peptide | null | epitope peptide | VIRAL PROTEIN | 04/16/17 | Structure of the Hepatitis C virus strain JFH1 glycoprotein E2 antigenic region 532-540 bound to the single chain variable fragment of the non-neutralizing antibody DAO5 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | null | hepatitis c virus | Vasiliauskaite, I., Rey, F.A., Krey, T. | 1.9 | X-RAY DIFFRACTION | 0.202 | 0.186 | true | true | unknown | unknown | unknown | null | null | null | null | null |
5ivn | A | null | 0 | B | peptide | null | cadherin derived peptide | PEPTIDE BINDING PROTEIN | 03/21/16 | BC2 nanobody in complex with the BC2 peptide tag | VICUGNA PACOS; SYNTHETIC CONSTRUCT | vicugna pacos | null | homo sapiens | Braun, M.B., Stehle, T. | 1.0 | X-RAY DIFFRACTION | 0.150 | 0.128 | false | true | IGHV1 | null | null | 0 | -12.078842 | Unknown | null | TBD |
6xc4 | X | Y | 0 | Z | protein | null | spike protein s1 | IMMUNE SYSTEM/VIRAL PROTEIN | 06/08/20 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CC12.3 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Yuan, M., Liu, H., Wu, N.C., Zhu, X., Wilson, I.A. | 2.341 | X-RAY DIFFRACTION | 0.219 | 0.184 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
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