pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6cdm | D | E | 0 | F | peptide | null | hiv fusion peptide (512-519) | IMMUNE SYSTEM | 02/08/18 | Structure of vaccine-elicited HIV-1 neutralizing antibody vFP7.04 in complex with HIV-1 fusion peptide residue 512-519 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | human immunodeficiency virus 1 | Xu, K., Liu, K., Kwong, P.D. | 2.408 | X-RAY DIFFRACTION | 0.222 | 0.184 | false | true | IGHV1 | IGKV1 | Kappa | 0 | -12.406714 | Unknown | null | TBD |
3wfe | H | L | 0 | B | C | protein | protein | NA | NA | nitric oxide reductase subunit b | nitric oxide reductase subunit c | IMMUNE SYSTEM/OXIDOREDUCTASE | 07/18/13 | Reduced and cyanide-bound cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment | PSEUDOMONAS AERUGINOSA; MUS MUSCULUS | mus musculus | mus musculus | pseudomonas aeruginosa | pseudomonas aeruginosa | Sato, N., Ishii, S., Hino, T., Sugimoto, H., Fukumori, Y., Shiro, Y., Tosha, T. | 2.49 | X-RAY DIFFRACTION | 0.227 | 0.189 | false | false | IGHV1 | IGKV16 | Kappa | null | null | null | null | null |
1bww | null | B | 0 | null | null | null | null | IMMUNE SYSTEM | 09/29/98 | BENCE-JONES IMMUNOGLOBULIN REI VARIABLE PORTION, T39K MUTANT | HOMO SAPIENS | null | homo sapiens | null | Uson, I., Pohl, E., Schneider, T.R., Dauter, Z., Schmidt, A., Fritz, H.J., Sheldrick, G.M. | 1.7 | X-RAY DIFFRACTION | unknown | unknown | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
6rp8 | H | L | 0 | C | protein | null | cytotoxic t-lymphocyte protein 4 | IMMUNE SYSTEM | 05/14/19 | Crystal Structure of Ipilimumab Fab complexed with CTLA-4 at 2.6A resolution | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Zhang, F., Zhou, A. | 2.6 | X-RAY DIFFRACTION | 0.267 | 0.211 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
5v6l | H | L | 0 | P | peptide | null | envelope glycoprotein, v3 region | VIRAL PROTEIN/IMMUNE SYSTEM | 03/17/17 | Crystal Structure of Rabbit Anti-HIV-1 gp120 V3 Fab 10A37 in complex with V3 peptide JR-FL | ORYCTOLAGUS CUNICULUS; SYNTHETIC CONSTRUCT | oryctolagus cuniculus | oryctolagus cuniculus | human immunodeficiency virus 1 | Pan, R., Kong, X.-P. | 2.549 | X-RAY DIFFRACTION | 0.252 | 0.206 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7ps6 | H | L | 0 | E | protein | null | spike protein s1 | VIRAL PROTEIN | 09/22/21 | Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-44 and Beta-54 Fabs | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Ren, J., Stuart, D.I. | 2.26 | X-RAY DIFFRACTION | 0.240 | 0.215 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
2r4s | H | L | 0 | A | protein | null | beta-2 adrenergic receptor | SIGNALING PROTEIN | 08/31/07 | Crystal structure of the human beta2 adrenoceptor | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Rasmussen, S.G.F., Choi, H.J., Rosenbaum, D.M., Kobilka, T.S., Thian, F.S., Edwards, P.C., Burghammer, M., Ratnala, V.R., Sanishvili, R., Fischetti, R.F., Schertler, G.F., Weis, W.I., Kobilka, B.K. | 3.4 | X-RAY DIFFRACTION | 0.280 | 0.226 | false | false | IGHV1 | IGKV14 | Kappa | null | null | null | null | null |
5w6g | H | L | 0 | A | protein | null | hemagglutinin ha1 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/16/17 | Human antibody 6649 in complex with influenza hemagglutinin H1 Solomon Islands | INFLUENZA A VIRUS (A/SOLOMON ISLANDS/3/2006(H1N1)); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (a/solomonislands/3/2006(h1n1)) | Raymond, D.D., Harrison, S.C. | 2.79 | X-RAY DIFFRACTION | 0.253 | 0.218 | false | true | IGHV4 | IGLV1 | Lambda | 0.000002 | -7.740263 | BLI | null | TBD |
3rvu | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 05/06/11 | Structure of 4C1 Fab in C2221 space group | MUS MUSCULUS | mus musculus | mus musculus | null | Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W. | 2.5 | X-RAY DIFFRACTION | 0.267 | 0.211 | false | true | IGHV3 | IGKV14 | Kappa | null | null | null | null | null |
3ru8 | H | L | 0 | X | protein | null | epitope scaffold 2bodx43 | DE NOVO PROTEIN, IMMUNE SYSTEM | 05/04/11 | Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab | HUMAN IMMUNODEFICIENCY VIRUS, SYNTHETIC CONSTRUCT, THERMOMONOSPORA FUSCA; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus, syntheticconstruct, thermomonospora fusca | Carrico, C.T.D., Strong, R.K. | 2.07 | X-RAY DIFFRACTION | 0.203 | 0.168 | false | true | IGHV1 | IGKV3 | Kappa | 0 | -10.19 | SPR | 25 | 22021856 |
5mhs | E | D | 0 | B | A | protein | protein | NA | NA | outer capsid protein sigma-1 | outer capsid protein sigma-1 | IMMUNE SYSTEM | 11/25/16 | T1L reovirus sigma1 complexed with 5C6 Fab fragments | REOVIRUS TYPE 1 (STRAIN LANG); MUS MUSCULUS | mus musculus | mus musculus | reovirus type 1 (strain lang) | reovirus type 1 (strain lang) | Stehle, T., Dietrich, M.H. | 3.7 | X-RAY DIFFRACTION | 0.278 | 0.261 | false | false | IGHV2 | IGKV3 | Kappa | null | null | null | null | null |
2ap2 | B | A | 0 | P | peptide | null | protein (p-glycoprotein) | IMMUNE SYSTEM | 03/22/99 | SINGLE CHAIN FV OF C219 IN COMPLEX WITH SYNTHETIC EPITOPE PEPTIDE | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Van Den Elsen, J.M.H., Rose, D.R. | 2.4 | X-RAY DIFFRACTION | 0.274 | 0.221 | true | true | IGHV14 | IGKV8 | Kappa | null | null | null | null | null |
6u0n | I | J | 0 | B | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 08/14/19 | Asymmetrically open conformational state (Class II) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Yang, Z., Bjorkman, P.J. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
2v7n | H | G | 0 | null | null | null | null | IMMUNE SYSTEM | 07/31/07 | Unusual twinning in crystals of the CitS binding antibody Fab fragment f3p4 | SYNTHETIC CONSTRUCT | synthetic construct | synthetic construct | null | Frey, D., Huber, T., Plueckthun, A., Gruetter, M.G. | 1.92 | X-RAY DIFFRACTION | unknown | unknown | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
1keg | H | L | 0 | A | nucleic-acid | null | 5'-d(*tp*(64t)p*tp*t)-3' | IMMUNE SYSTEM/DNA | 11/15/01 | Antibody 64M-2 Fab complexed with dTT(6-4)TT | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Yokoyama, H., Mizutani, R., Satow, Y., Sato, K., Komatsu, Y., Ohtsuka, E., Nikaido, O. | 2.4 | X-RAY DIFFRACTION | 0.268 | 0.201 | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
4p3d | H | L | 0 | M | peptide | null | matrix metalloproteinase-14 | IMMUNE SYSTEM | 03/07/14 | MT1-MMP:Fab complex (Form II) | MUS MUSCULUS; HOMO SAPIENS | mus musculus | mus musculus | homo sapiens | Rozenberg, H., Udi, Y., Sagi, I. | 1.949 | X-RAY DIFFRACTION | 0.210 | 0.158 | false | true | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
6qx4 | C | null | 0 | A | protein | null | s-layer protein sap | STRUCTURAL PROTEIN | 03/07/19 | Structure of the Bacillus anthracis Sap S-layer assembly domain | BACILLUS ANTHRACIS; LAMA GLAMA | lama glama | null | bacillus anthracis | Remaut, H., Fioravanti, A. | 3.27 | X-RAY DIFFRACTION | 0.218 | 0.173 | false | true | IGHV1 | null | null | null | null | null | null | null |
6jc2 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 01/27/19 | Crystal structure of the Fab fragment of ipilimumab | HOMO SAPIENS | homo sapiens | homo sapiens | null | Heo, Y.S. | 2.65 | X-RAY DIFFRACTION | 0.263 | 0.202 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7k5y | N | n | 0 | G | H | protein | protein | NA | NA | histone h2a type 1-b/e | histone h2b type 1-j | NUCLEAR PROTEIN/DNA | 09/17/20 | Cryo-EM structure of a chromatosome containing human linker histone H1.4 | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | homo sapiens | Zhou, B.-R., Bai, Y. | 2.76 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
5kvg | H | L | 0 | E | protein | null | zika envelope diii | VIRAL PROTEIN/IMMUNE SYSTEM | 07/14/16 | Zika specific antibody, ZV-67, bound to ZIKA envelope DIII | ZIKA VIRUS; MUS MUSCULUS | mus musculus | mus musculus | zika virus | Zhao, H., Nelson, C.A., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID) | 1.4 | X-RAY DIFFRACTION | 0.179 | 0.148 | false | false | IGHV1 | IGKV6 | Kappa | 0 | -10.989692 | SPR | null | TBD |
5vm4 | L | null | 0 | null | null | null | null | UNKNOWN FUNCTION | 04/26/17 | The apo form of the triclocarban-binding single domain camelid nanobody VHH T10 | LAMA GLAMA | lama glama | null | null | Tabares-da Rosa, S., Gonzalez-Sapienza, G., Wilson, D.K. | 1.9 | X-RAY DIFFRACTION | 0.241 | 0.197 | false | true | unknown | unknown | unknown | null | null | null | null | null |
5uk4 | p | null | 0 | P | protein | null | anti-vesicular stomatitis virus n vhh | Viral Protein/RNA/Immune System | 01/19/17 | VESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307 | VESICULAR STOMATITIS INDIANA VIRUS (STRAIN SAN JUAN); VICUGNA PACOS | vicugna pacos | null | vesicular stomatitis indiana virus (strain sanjuan) | Hanke, L., Knockenhauer, K.E., Ploegh, H.L., Schwartz, T.U. | 3.204 | X-RAY DIFFRACTION | 0.288 | 0.237 | false | false | IGHV1 | null | null | null | null | null | null | null |
6e3y | N | null | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 07/16/18 | Cryo-EM structure of the active, Gs-protein complexed, human CGRP receptor | LAMA GLAMA; HOMO SAPIENS; SYNTHETIC CONSTRUCT | lama glama | null | homo sapiens | homo sapiens | Liang, Y.L., Khoshouei, M., Deganutti, G., Glukhova, A., Koole, C., Peat, T.S., Radjainia, M., Plitzko, J.M., Baumeister, W., Miller, L.J., Hay, D.L., Christopoulos, A., Reynolds, C.A., Wootten, D., Sexton, P.M. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
6ewb | H | L | 0 | B | protein | null | vp1 | VIRAL PROTEIN | 11/03/17 | Crystal structure of GII.4 UNSW 2012 P domain in complex with Fab 10E9 | NOROVIRUS HU/GII.4/SYDNEY/NSW0514/2012/AU; MUS MUSCULUS | mus musculus | mus musculus | norovirus hu/gii.4/sydney/nsw0514/2012/au | Koromyslova, A.D., Hansman, G.S. | 2.78 | X-RAY DIFFRACTION | 0.222 | 0.186 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
3wkm | I | M | 0 | B | protein | null | putative zinc metalloprotease aq_1964 | HYDROLASE | 10/28/13 | The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment | AQUIFEX AEOLICUS; MUS MUSCULUS | mus musculus | mus musculus | aquifex aeolicus | Nogi, T., Tabata, S., Tamura-kawakami, K., Takagi, J. | 2.2 | X-RAY DIFFRACTION | 0.272 | 0.224 | false | false | IGHV14 | IGKV3 | Kappa | null | null | null | null | null |
7mjs | H | L | 0 | X | protein | null | major facilitator superfamily domain containing 2a | LIPID TRANSPORT/IMMUNE SYSTEM | 04/20/21 | Single-Particle Cryo-EM Structure of Major Facilitator Superfamily Domain containing 2A in complex with LPC-18:3 | SYNTHETIC CONSTRUCT; GALLUS GALLUS | synthetic construct | synthetic construct | gallus gallus | Cater, R.J., Chua, G.L., Erramilli, S.K., Keener, J.E., Choy, B.C., Tokarz, P., Chin, C.F., Quek, D.Q.Y., Kloss, B., Pepe, J.G., Parisi, G., Wong, B.H., Clarke, O.B., Marty, M.T., Kossiakoff, A.A., Khelashvili, G., Silver, D.L., Mancia, F. | 3.03 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6tys | H | L | 0 | A | protein | null | fusion glycoprotein f0 | VIRAL PROTEIN/IMMUNE SYSTEM | 08/09/19 | A potent cross-neutralizing antibody targeting the fusion glycoprotein inhibits Nipah virus and Hendra virus infection | NIPAH VIRUS; MUS MUSCULUS | mus musculus | mus musculus | nipah virus | Dang, H.V., Chan, Y.P., Park, Y.J., Snijder, J., Da Silva, S.C., Vu, B., Yan, L., Feng, Y.R., Rockx, B., Geisbert, T., Mire, C.E., Broder, C.B., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGKV12 | Kappa | null | null | null | null | null |
7o3b | C | null | 0 | I | protein | null | tau-tubulin kinase 2,centrosomal protein of 164 kda | STRUCTURAL PROTEIN | 04/01/21 | Crystal structure of the TTBK2-CEP164 complex bound to a camelid nanobody | CAMELIDAE MIXED LIBRARY; HOMO SAPIENS | camelidae mixed library | null | homo sapiens | e Silva, I.R., van Breugel, M. | 2.4 | X-RAY DIFFRACTION | 0.240 | 0.189 | false | true | IGHV1 | null | null | null | null | null | null | null |
6uul | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 10/30/19 | Crystal structure of broad and potent HIV-1 neutralizing antibody 438-D5 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Kumar, S., Wilson, I.A. | 2.06 | X-RAY DIFFRACTION | 0.246 | 0.201 | false | true | unknown | IGKV3 | Kappa | null | null | null | null | null |
3cfk | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 03/04/08 | Crystal structure of catalytic elimination antibody 34E4, triclinic crystal form | MUS MUSCULUS, HOMO SAPIENS | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Debler, E.W., Wilson, I.A. | 2.6 | X-RAY DIFFRACTION | 0.244 | 0.221 | false | true | IGHV4 | IGLV1 | Lambda | null | null | null | null | null |
6bli | G | H | 0 | I | peptide | null | major surface glycoprotein g | VIRAL PROTEIN/IMMUNE SYSTEM | 11/10/17 | RSV G peptide bound to Fab CB002.5 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human respiratory syncytial virus a (strainrsb6256) | Jones, H.G., McLellan, J.S., Langedijk, J.P. | 2.12 | X-RAY DIFFRACTION | 0.218 | 0.169 | false | true | IGHV4 | IGKV1 | Kappa | 0 | -12.665638 | Unknown | null | TBD |
7ekb | H | L | 0 | P | peptide | null | mper region of the hiv-1 envelope glycoprotein proteingp41 | IMMUNE SYSTEM | 04/05/21 | Crystal structure of 4E10 modified with pyrene acetamide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Caaveiro, J.M.M., Rujas, E., Nieva, J.L. | 1.45 | X-RAY DIFFRACTION | 0.151 | 0.120 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6r2s | B | A | 0 | C | protein | null | duffy receptor | IMMUNE SYSTEM | 03/18/19 | The structure of Plasmodium vivax Duffy binding protein (PvDBP) bound to human antibody DB9 | HOMO SAPIENS; PLASMODIUM VIVAX (STRAIN SALVADOR I) | homo sapiens | homo sapiens | plasmodium vivax (strain salvador i) | Barber, N.M., Higgins, M.K. | 3.04 | X-RAY DIFFRACTION | 0.238 | 0.202 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
7bek | H | L | 0 | E | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 12/23/20 | Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-158 Fab (crystal form 2) | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Zhao, Y., Ren, J., Stuart, D. | 2.04 | X-RAY DIFFRACTION | 0.220 | 0.200 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2qqn | H | L | 0 | A | protein | null | neuropilin-1 | SIGNALING PROTEIN | 07/26/07 | Neuropilin-1 b1 Domain in Complex with a VEGF-Blocking Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Appleton, B.A., Wiesmann, C. | 2.2 | X-RAY DIFFRACTION | 0.207 | 0.159 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6a4k | J | N | 0 | C | protein | null | hemagglutinin | VIRAL PROTEIN/IMMUNE SYSTEM | 06/20/18 | Human antibody 32D6 Fab in complex with H1N1 influenza A virus HA1 | INFLUENZA A VIRUS (A/CALIFORNIA/7/2009(H1N1)); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (a/california/7/2009(h1n1)) | Lee, C.C., Ko, T.P., Lin, L.L., Wang, A.H.J. | 3.15 | X-RAY DIFFRACTION | 0.233 | 0.175 | false | true | IGHV4 | IGLV4 | Lambda | null | null | null | null | null |
5w9p | K | L | 0 | H | protein | null | spike glycoprotein | VIRAL PROTEIN | 06/23/17 | MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4 | MIDDLE EAST RESPIRATORY SYNDROME-RELATED CORONAVIRUS; MUS MUSCULUS | mus musculus | mus musculus | middle east respiratory syndrome-relatedcoronavirus | Pallesen, J., Ward, A.B. | 4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6flc | H | L | 0 | G | protein | null | domain iii of dengue virus 2 | VIRAL PROTEIN | 01/25/18 | 2C8 Fab bound to EDIII of DenV 2 | MUS MUSCULUS; DENGUE VIRUS 2 | mus musculus | mus musculus | dengue virus 2 | Flanagan, A., Renner, M., Grimes, J.M. | 2.0 | X-RAY DIFFRACTION | 0.216 | 0.180 | false | true | IGHV7 | IGKV12 | Kappa | 0 | -9.212418 | SPR | null | TBD |
7lxy | M | K | 0 | J | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 03/05/21 | SARS-CoV-2 S/S2M11/S2X333 Global Refinement | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 2.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4rzc | A | B | 0 | A | carbohydrate | M6P | ALPHA-D-MANNOSE-6-PHOSPHATE | IMMUNE SYSTEM | 12/19/14 | Fv M6P-1 in complex with mannose-6-phosphate | ORYCTOLAGUS CUNICULUS | oryctolagus cuniculus | oryctolagus cuniculus | oryctolagus cuniculus | Blackler, R.J., Evans, D.W., Evans, S.V., Muller-Loennies, S. | 2.723 | X-RAY DIFFRACTION | 0.267 | 0.226 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7r8n | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 06/26/21 | Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody C051 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Barnes, C.O., Bjorkman, P.J. | 3.55 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
6ztd | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/18/20 | Crystal structure of the BCR Fab fragment from subset #169 case P6540 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Carriles, A.A., Minici, C., Degano, M. | 3.43 | X-RAY DIFFRACTION | 0.263 | 0.217 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
7rfc | H | L | 0 | D | protein | null | envelope glycoprotein e2 | VIRAL PROTEIN/IMMUNE SYSTEM | 07/14/21 | Crystal structure of broadly neutralizing antibody mAb1382 in complex with Hepatitis C virus envelope glycoprotein E2 ectodomain | HOMO SAPIENS; HEPACIVIRUS C | homo sapiens | homo sapiens | hepacivirus c | Flyak, A.I., Bjorkman, P.J. | 3.24 | X-RAY DIFFRACTION | 0.284 | 0.233 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6mwc | O | P | 0 | N | protein | null | e2 | VIRUS/IMMUNE SYSTEM | 10/29/18 | CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-5 antibody | EASTERN EQUINE ENCEPHALITIS VIRUS; MUS MUSCULUS | mus musculus | mus musculus | eastern equine encephalitis virus | Hasan, S.S., Sun, C., Kim, A.S., Watanabe, Y., Chen, C.L., Klose, T., Buda, G., Crispin, M., Diamond, M.S., Klimstra, W.B., Rossmann, M.G. | 7.5 | ELECTRON MICROSCOPY | null | null | false | false | IGHV9 | IGLV1 | Lambda | null | null | null | null | null |
5icx | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 02/23/16 | Cetuximab Fab in complex with CQFDLSTRRLRCGGSK meditope | MUS MUSCULUS, HOMO SAPIENS; SYNTHETIC CONSTRUCT | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Bzymek, K.P., Williams, J.C. | 2.6 | X-RAY DIFFRACTION | 0.222 | 0.177 | false | true | IGHV2 | IGKV5 | Kappa | 0 | -9.493239 | Unknown | null | TBD |
7oay | D | null | 0 | C | protein | null | unknown | ANTIVIRAL PROTEIN | 04/20/21 | Nanobody F2 bound to RBD | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; LAMA GLAMA | null | null | null | Naismith, J.H., Mikolajek, H. | 2.34 | X-RAY DIFFRACTION | 0.228 | 0.192 | false | false | IGHV1 | null | null | null | null | null | null | null |
4np4 | I | M | 0 | A | protein | null | toxin b | IMMUNE SYSTEM | 11/20/13 | Clostridium difficile toxin B CROP domain in complex with FAB domains of neutralizing antibody bezlotoxumab | CLOSTRIDIUM DIFFICILE; HOMO SAPIENS | homo sapiens | homo sapiens | clostridium difficile | Orth, P., Xiao, L., Hernandez, L.D., Reichert, P., Sheth, P., Beaumont, M., Murgolo, N., Ermakov, G., DiNunzio, E., Racine, F., Karczewski, J., Secore, S., Ingram, R.N., Mayhood, T., Strickland, C., Therien, A.G. | 2.89 | X-RAY DIFFRACTION | 0.232 | 0.198 | false | false | IGHV5 | IGKV3 | Kappa | 0 | -14.626397 | SPR | null | TBD |
3fzu | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 01/26/09 | IgG1 Fab characterized by H/D exchange | HOMO SAPIENS | homo sapiens | homo sapiens | null | Arndt, J., Houde, D., Domeier, W., Berkowitz, S., Engen, J.R. | 2.5 | X-RAY DIFFRACTION | 0.261 | 0.210 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6iyn | A | null | 12 | null | null | null | null | AFLATOXIN B1-BINDING PROTEIN | 12/17/18 | Solution structure of camelid nanobody Nb26 against aflatoxin B1 | VICUGNA PACOS | vicugna pacos | null | null | Nie, Y., He, T., Zhu, J., Li, S.L., Hu, R., Yang, Y.H. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7r8m | D | E | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 06/26/21 | Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody C032 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | DeLaitsch, A.T., Barnes, C.O., Bjorkman, P.J. | 3.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGLV1 | Lambda | null | null | null | null | null |
1nd0 | F | E | 0 | E | Hapten | DP4 | (1S,4S)-4-[DIMETHYL(PHENYL)SILYL]-1-METHYLPIPERIDINE 1-OXIDE | IMMUNE SYSTEM | 12/05/02 | CATIONIC CYCLIZATION ANTIBODY 4C6 COMPLEX WITH TRANSITION STATE ANALOG | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Zhu, X., Wilson, I.A. | 2.45 | X-RAY DIFFRACTION | 0.286 | 0.242 | false | false | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6rai | C | null | 0 | B | protein | null | multidrug resistance abc transporter atp-binding andpermease protein | TRANSPORT PROTEIN | 04/06/19 | Heterodimeric ABC exporter TmrAB in ATP-bound outward-facing occluded conformation | THERMUS THERMOPHILUS; VICUGNA PACOS | vicugna pacos | null | thermus thermophilus | Thomas, C., Januliene, D., Mehdipour, A.R., Hofmann, S., Hummer, G., Moeller, A., Tampe, R. | 2.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
5nm0 | B | null | 0 | null | null | null | null | IMMUNE SYSTEM | 04/05/17 | Nb36 Ser85Cys with Hg, crystal form 1 | LAMA GLAMA | lama glama | null | null | Hansen, S.B., Andersen, K.R., Laursen, N.S., Andersen, G.R. | 1.5 | X-RAY DIFFRACTION | 0.211 | 0.189 | false | true | IGHV1 | null | null | null | null | null | null | null |
7tzf | N | null | 0 | A | B | G | protein | protein | protein | NA | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2 | MEMBRANE PROTEIN | 02/15/22 | Human Amylin3 Receptor in complex with Gs and rat amylin peptide | HOMO SAPIENS; LAMA GLAMA; SYNTHETIC CONSTRUCT | lama glama | null | homo sapiens | homo sapiens | homo sapiens | Cao, J., Belousoff, M.J., Johnson, R.M., Wootten, D.L., Sexton, P.M. | 2.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
6s3d | A | B | 0 | N | protein | null | s0_2.126 | ANTIVIRAL PROTEIN | 06/25/19 | Structure of D25 Fab in complex with scaffold S0_2.126 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | synthetic construct | Cramer, J.T., Krey, T. | 3.0 | X-RAY DIFFRACTION | 0.292 | 0.269 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6ba5 | H | G | 0 | P | protein | null | inactive tyrosine-protein kinase transmembrane receptorror1 | IMMUNE SYSTEM | 10/12/17 | Potent and Selective Antitumor Activity of a T-Cell Engaging Bispecific Antibody Targeting a Membrane-Proximal Epitope of ROR1 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Park, H., Rader, C. | 1.62 | X-RAY DIFFRACTION | 0.214 | 0.194 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7a0x | C | D | 0 | A | protein | null | na(+)/h(+) antiporter nhaa | MEMBRANE PROTEIN | 08/11/20 | Structure of dimeric sodium proton antiporter NhaA, at pH 6.0, crystallized with chimeric Fab antibodies | SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720); GALLUS GALLUS; HOMO SAPIENS | gallus gallus, homo sapiens | gallus gallus, homo sapiens | salmonella typhimurium (strain lt2 / sgsc1412 /atcc 700720) | Fippel, A., Lentes, C.J., Mir, S.H., Wirth, C., Hunte, C. | 2.37 | X-RAY DIFFRACTION | 0.241 | 0.205 | false | true | unknown | unknown | unknown | null | null | null | null | null |
7soc | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 10/29/21 | SARS-CoV-2 S RBD B.1.617.1 kappa variant S309 Local Refinement | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6wfx | H | L | 0 | P | peptide | null | npna2 peptide | IMMUNE SYSTEM | 04/04/20 | Crystal structure of Fab395 in complex with NPNA2 peptide from circumsporozoite protein | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | plasmodium falciparum | Pholcharee, T., Oyen, D., Wilson, I.A. | 2.59 | X-RAY DIFFRACTION | 0.244 | 0.198 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7zml | G | null | 0 | D | protein | null | atp-dependent dna helicase q5 | HYDROLASE | 04/19/22 | Crystal structure of human RECQL5 helicase APO form in complex with engineered nanobody (Gluebody) G1-001 | Homo sapiens; Lama glama | lama glama | null | homo sapiens | Ye, M., Makola, M., Newman, J.A., Fairhead, M., MacLean, E., Krojer, T., Aitkenhead, H., Bountra, C., Gileadi, O., von Delft, F. | 2.79 | X-RAY DIFFRACTION | 0.260 | 0.223 | false | true | IGHV1 | null | null | null | null | null | null | null |
5viy | K | L | 0 | B | protein | null | envelope glycoprotein gp160 | VIRAL PROTEIN/IMMUNE SYSTEM | 04/17/17 | BG505 SOSIP.664 in complex with broadly neutralizing antibodies BG1 and 8ANC195 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Wang, H., Bjorkman, P.J. | 6.2 | ELECTRON MICROSCOPY | null | null | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
2qr0 | X | W | 0 | V | protein | null | vascular endothelial growth factor a | IMMUNE SYSTEM | 07/27/07 | Structure of VEGF complexed to a Fab containing TYR and SER in the CDRs | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Wiesmann, C. | 3.5 | X-RAY DIFFRACTION | 0.312 | 0.291 | false | false | IGHV3 | IGKV1 | Kappa | 0 | -11.5 | SPR | 37 | 17825836 |
7qnd | K | null | 0 | B | protein | null | gamma-aminobutyric acid receptor subunit beta-3 | MEMBRANE PROTEIN | 12/20/21 | Cryo-EM structure of human full-length extrasynaptic beta3delta GABA(A)R in complex with THIP (gaboxadol), histamine and nanobody Nb25 | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Sente, A., Desai, R., Naydenova, K., Malinauskas, T., Jounaidi, Y., Miehling, J., Zhou, X., Masiulis, S., Hardwick, S.W., Chirgadze, D.Y., Miller, K.W., Aricescu, A.R. | 3.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6did | L | H | 0 | A | B | protein | protein | NA | NA | envelope glycoprotein gp160 | envelope glycoprotein gp160 | VIRAL PROTEIN | 05/23/18 | HIV Env BG505 SOSIP with polyclonal Fabs from immunized rabbit #3417 post-boost#1 | HUMAN IMMUNODEFICIENCY VIRUS 1; ORYCTOLAGUS CUNICULUS | oryctolagus cuniculus | oryctolagus cuniculus | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Turner, H.L., Cottrell, C.A., Oyen, D., Wilson, I.A., Ward, A.B. | 4.71 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
1ub5 | A | B | 0 | B | Hapten | SPB | 4-(4-STYRYL-PHENYLCARBAMOYL)-BUTYRIC ACID | IMMUNE SYSTEM | 03/30/03 | Crystal structure of Antibody 19G2 with hapten at 100K | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Beuscher, A.B., Wirsching, P., Lerner, R.A., Janda, K., Stevens, R.C. | 2.0 | X-RAY DIFFRACTION | 0.267 | 0.248 | false | true | IGHV5 | IGKV2 | Kappa | null | null | null | null | null |
3l7f | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 12/28/09 | Structure of IL-13 antibody H2L6, A humanized variant OF C836 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Teplyakov, A., Obmolova, G., Malia, T., Gilliland, G.L. | 2.6 | X-RAY DIFFRACTION | 0.243 | 0.205 | false | true | IGHV2 | IGKV3 | Kappa | null | null | null | null | null |
5vph | D | C | 0 | A | protein | null | peptidase 1 | HYDROLASE/IMMUNE SYSTEM | 05/05/17 | CRYSTAL STRUCTURE OF DER P 1 COMPLEXED WITH FAB 4C1 | MUS MUSCULUS; DERMATOPHAGOIDES PTERONYSSINUS | mus musculus | mus musculus | dermatophagoides pteronyssinus | Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W. | 2.5 | X-RAY DIFFRACTION | 0.229 | 0.178 | false | true | IGHV3 | IGKV14 | Kappa | null | null | null | null | null |
6mlm | K | L | 0 | H | protein | null | hemagglutinin ha1 chain | VIRAL PROTEIN/Immune System | 09/27/18 | H7 HA0 in complex with Fv from H7.5 IgG | INFLUENZA A VIRUS (A/NEW YORK/107/2003(H7N2)); INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (a/new york/107/2003(h7n2)) | Pallesen, J., Turner, H.L., Ward, A.B. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
2dqe | H | L | 0 | Y | protein | null | lysozyme c | IMMUNE SYSTEM/HYDROLASE | 05/25/06 | Crystal structure of hyhel-10 FV mutant (Hy53a) complexed with hen egg lysozyme | MUS MUSCULUS; GALLUS GALLUS | mus musculus | mus musculus | gallus gallus | Shiroishi, M., Kondo, H., Tsumoto, K., Kumagai, I. | 1.9 | X-RAY DIFFRACTION | 0.224 | 0.194 | false | true | IGHV3 | IGKV5 | Kappa | null | null | null | null | null |
1q1j | H | L | 0 | P | peptide | null | gp120 v3 peptide | IMMUNE SYSTEM | 07/21/03 | Crystal Structure Analysis of anti-HIV-1 Fab 447-52D in complex with V3 peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | null | Stanfield, R.L., Gorny, M.K., Williams, C., Zolla-Pazner, S., Wilson, I.A. | 2.5 | X-RAY DIFFRACTION | 0.285 | 0.250 | false | false | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
5njd | P | O | 0 | I | B | protein | protein | NA | NA | interleukin-12 subunit beta | interleukin-23 subunit alpha | IMMUNE SYSTEM | 03/28/17 | Structure of Interleukin 23 in complex with Briakinumab FAb | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | homo sapiens | Bloch, Y., Savvides, S.N. | 3.9 | X-RAY DIFFRACTION | 0.312 | 0.272 | false | true | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
5icz | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 02/23/16 | Cetuximab Fab in complex with GQFDLSTRRLKG peptide | MUS MUSCULUS, HOMO SAPIENS; SYNTHETIC CONSTRUCT | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Bzymek, K.P., Williams, J.C. | 2.55 | X-RAY DIFFRACTION | 0.221 | 0.171 | false | true | IGHV2 | IGKV5 | Kappa | 0.000005 | -7.231899 | Unknown | null | TBD |
5ff6 | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 12/17/15 | Cetuximab Fab in complex with L10Q meditope variant | MUS MUSCULUS, HOMO SAPIENS; SYNTHETIC CONSTRUCT | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Bzymek, K.P., Williams, J.C. | 2.5 | X-RAY DIFFRACTION | 0.201 | 0.155 | false | true | IGHV2 | IGKV5 | Kappa | 0.00001 | -6.851611 | Unknown | null | TBD |
7k3a | H | G | 0 | A | B | protein | protein | NA | NA | hemagglutinin | hemagglutinin | VIRAL PROTEIN | 09/10/20 | Structure of full-length influenza HA with a head-binding antibody at pH 5.2, conformation B, fusion peptide release | INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/1968 H3N2); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (strain a/hong kong/1/1968h3n2) | influenza a virus (strain a/hong kong/1/1968h3n2) | Gui, M., Gao, J., Xiang, Y. | 4.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
3wfc | H | L | 0 | B | C | protein | protein | NA | NA | nitric oxide reductase subunit b | nitric oxide reductase subunit c | IMMUNE SYSTEM/OXIDOREDUCTASE | 07/18/13 | Reduced and carbonmonoxide-bound cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment | MUS MUSCULUS; PSEUDOMONAS AERUGINOSA | mus musculus | mus musculus | pseudomonas aeruginosa | pseudomonas aeruginosa | Sato, N., Ishii, S., Hino, T., Sugimoto, H., Fukumori, Y., Shiro, Y., Tosha, T. | 2.5 | X-RAY DIFFRACTION | 0.232 | 0.191 | false | false | IGHV1 | IGKV16 | Kappa | null | null | null | null | null |
4nyl | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 12/10/13 | Crystal structure of adalimumab FAB fragment | HOMO SAPIENS | homo sapiens | homo sapiens | null | Fan, L.J., Lv, L.L., Zhang, Q.J., Chen, C.L. | 2.8 | X-RAY DIFFRACTION | 0.358 | 0.275 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4xbg | A | B | 0 | A | Hapten | 44E | (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate | IMMUNE SYSTEM | 12/16/14 | Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA): 2.73 A resolution | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Irimia, A., Stanfield, R.L., Wilson, I.A. | 2.73 | X-RAY DIFFRACTION | 0.246 | 0.202 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6dbg | D | null | 0 | null | null | null | null | IMMUNE SYSTEM | 05/03/18 | Crystal Structure of VHH R303 in complex with InlB-LRR-IR | LISTERIA MONOCYTOGENES; CAMELUS DROMEDARIUS | camelus dromedarius | null | null | Brooks, C.L., Toride King, M., Huh, I. | 1.51 | X-RAY DIFFRACTION | 0.180 | 0.160 | false | true | IGHV1 | null | null | null | null | null | null | null |
1mak | null | A | 11 | null | null | null | null | IMMUNOGLOBULIN | 09/16/93 | SOLUTION STRUCTURE OF AN ISOLATED ANTIBODY VL DOMAIN | MUS MUSCULUS | null | mus musculus | null | Constantine, K.L., Friedrichs, M.S., Metzler, W.J., Wittekind, M., Hensley, P., Mueller, L. | NOT | SOLUTION NMR | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
7rdj | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 07/09/21 | Crystal structure of PCDN-16B, an anti-HIV antibody from the PCDN bnAb lineage (non-cysteinylated state) | HOMO SAPIENS | homo sapiens | homo sapiens | null | Omorodion, O., Wilson, I.A. | 1.93 | X-RAY DIFFRACTION | 0.210 | 0.170 | false | true | IGHV4 | IGKV3 | Kappa | null | null | null | null | null |
4evn | C | D | 0 | null | null | null | null | immune system | 04/26/12 | Crystal Structure of Fab CR6261 (somatic heavy chain with germline-reverted light chain) | HOMO SAPIENS | homo sapiens | homo sapiens | null | Whittle, J.R.R. | 2.851 | X-RAY DIFFRACTION | 0.293 | 0.230 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
1ggc | H | L | 0 | null | null | null | null | IMMUNOGLOBULIN | 07/19/93 | MAJOR ANTIGEN-INDUCED DOMAIN REARRANGEMENTS IN AN ANTIBODY | MUS MUSCULUS | mus musculus | mus musculus | null | Takimoto-Kamimura, M., Wilson, I.A. | 2.8 | X-RAY DIFFRACTION | unknown | 0.190 | false | true | IGHV8 | IGKV3 | Kappa | null | null | null | null | null |
4xrc | H | L | 0 | C | protein | null | hemagglutinin | VIRAL PROTEIN/IMMUNE SYSTEM | 01/20/15 | Antibody hemagglutinin Complexes | HOMO SAPIENS; INFLUENZA A VIRUS (A/CHICKEN/THAILAND/TAK-01/2004(H5N1)) | homo sapiens | homo sapiens | influenza a virus (a/chicken/thailand/tak-01/2004(h5n1)) | Spiller, B.W., Winarski, K.L. | 2.74 | X-RAY DIFFRACTION | 0.248 | 0.192 | false | true | IGHV4 | IGLV3 | Lambda | null | null | null | null | null |
4mqs | B | null | 0 | A | protein | null | muscarinic acetylcholine receptor m2 | SIGNALING PROTEIN | 09/16/13 | Structure of active human M2 muscarinic acetylcholine receptor bound to the agonist iperoxo | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Kruse, A.C., Ring, A.M., Manglik, A., Hu, J., Hu, K., Eitel, K., Huebner, H., Pardon, E., Valant, C., Sexton, P.M., Christopoulos, A., Felder, C.C., Gmeiner, P., Steyaert, J., Weis, W.I., Garcia, K.C., Wess, J., Kobilka, B.K. | 3.5 | X-RAY DIFFRACTION | 0.298 | 0.249 | false | true | IGHV1 | null | null | null | null | null | null | null |
7jvb | C | null | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 08/20/20 | Crystal structure of the SARS-CoV-2 spike receptor-binding domain (RBD) with nanobody Nb20 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; LAMA GLAMA | lama glama | null | severe acute respiratory syndrome coronavirus2 | Xiang, Y., Xiao, Z., Liu, H., Sang, Z., Schneidman-Duhovny, D., Zhang, C., Shi, Y. | 3.287 | X-RAY DIFFRACTION | 0.322 | 0.281 | false | true | IGHV1 | null | null | null | null | null | null | null |
1x9q | a | A | 0 | null | null | null | null | IMMUNE SYSTEM | 08/24/04 | 4m5.3 anti-fluorescein single chain antibody fragment (scFv) | HOMO SAPIENS | null | homo sapiens | null | Midelfort, K.S., Hernandez, H.H., Lippow, S.M., Tidor, B., Drennan, C.L., Wittrop, K.D. | 1.5 | X-RAY DIFFRACTION | 0.193 | 0.165 | true | true | unknown | unknown | unknown | null | null | null | null | null |
2ai0 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/28/05 | Anti-Cocaine Antibody 7.5.21, Crystal Form III | MUS MUSCULUS | mus musculus | mus musculus | null | Pozharski, E., Hewagama, A., Shanafelt, A., Ringe, D., Petsko, G.A. | 2.2 | X-RAY DIFFRACTION | 0.279 | 0.222 | false | false | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
7d6y | B | null | 0 | A | protein | null | eukaryotic translation initiation factor 4e | RNA BINDING PROTEIN | 10/02/20 | eIF4E in Complex with a Disulphide-Free Autonomous VH Domain | HOMO SAPIENS | homo sapiens | null | homo sapiens | Brown, C.J., Frosi, Y., Jiang, S., Lin, Y.C. | 1.668 | X-RAY DIFFRACTION | 0.206 | 0.182 | false | true | IGHV3 | null | null | null | null | null | null | null |
1cz8 | H | L | 0 | W | protein | null | vascular endothelial growth factor | IMMUNE SYSTEM | 09/01/99 | VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH AN AFFINITY MATURED ANTIBODY | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Chen, Y., Wiesmann, C., Fuh, G., Li, B., Christinger, H.W., McKay, P., de Vos, A.M., Lowman, H.B. | 2.4 | X-RAY DIFFRACTION | 0.267 | 0.208 | false | true | IGHV7 | IGKV1 | Kappa | 0 | -14.12 | SPR | 37 | 10543973 |
6hda | A | null | 0 | null | null | null | null | TRANSPORT PROTEIN | 08/17/18 | Crystal structure of the potassium channel MtTMEM175 with cesium | LAMA GLAMA; ESCHERICHIA COLI (STRAIN K12); MARIVIRGA TRACTUOSA DSM 4126 | lama glama, escherichia coli (strain k12) | null | null | Brunner, J.D., Jakob, R.P., Schulze, T., Neldner, Y., Moroni, A., Thiel, G., Maier, T., Schenck, S. | 3.8 | X-RAY DIFFRACTION | 0.337 | 0.280 | false | true | IGHV1 | null | null | null | null | null | null | null |
1vhp | A | null | 3 | null | null | null | null | IMMUNOGLOBULIN | 04/16/96 | VH-P8, NMR | HOMO SAPIENS | homo sapiens | null | null | Riechmann, L. | NOT | SOLUTION NMR | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
4xcn | J | K | 0 | null | null | null | null | IMMUNE SYSTEM | 12/18/14 | Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA); 2.9 A resolution | HOMO SAPIENS | homo sapiens | homo sapiens | null | Irimia, A., Stanfield, R.L., Wilson, I.A. | 2.9 | X-RAY DIFFRACTION | 0.246 | 0.193 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7rm3 | C | D | 0 | P | peptide | null | peptide from circumsporozoite protein variant vk247 | ANTIMICROBIAL PROTEIN | 07/26/21 | Antibody 2E10.E9 in complex with P. vivax CSP peptide ANGAGNQPGANGAGNQPGANGAGGQAA | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | plasmodium vivax | Kucharska, I., Ivanochko, D., Julien, J.P. | 2.68 | X-RAY DIFFRACTION | 0.239 | 0.207 | false | true | IGHV9 | IGKV8 | Kappa | null | null | null | null | null |
6gv4 | H | L | 0 | B | A | protein | protein | NA | NA | vp1 | vp0 | VIRUS | 06/20/18 | High-resolution Cryo-EM of Fab-labeled human parechovirus 3 | HOMO SAPIENS; HUMAN PARECHOVIRUS 3 | homo sapiens | homo sapiens | human parechovirus 3 | human parechovirus 3 | Domanska, A., Flatt, J.W., Jukonen, J.J.J., Geraets, J.A., Butcher, S.J. | 2.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5mu0 | C | D | 0 | R | peptide | null | ia03 peptide containing the citrullinated c1 epitope ofcollagen type ii,collagen alpha-1(ii) chain,ia03 peptide containing the citrullinated c1 epitope of collagen type ii | IMMUNE SYSTEM | 01/11/17 | ACC1 Fab fragment in complex with citrullinated C1 epitope of CII (IA03) | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | mus musculus | Dobritzsch, D., Holmdahl, R., Ge, C. | 2.7 | X-RAY DIFFRACTION | 0.279 | 0.252 | false | false | IGHV6 | IGKV3 | Kappa | null | null | null | null | null |
3ria | H | L | 0 | A | protein | null | avermectin-sensitive glutamate-gated chloride channel gluclalpha | TRANSPORT PROTEIN/IMMUNE SYSTEM | 04/13/11 | C. elegans glutamate-gated chloride channel (GluCl) in complex with Fab, ivermectin and iodide. | CAENORHABDITIS ELEGANS; MUS MUSCULUS | mus musculus | mus musculus | caenorhabditis elegans | Hibbs, R.E., Gouaux, E. | 3.8 | X-RAY DIFFRACTION | 0.280 | 0.266 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
3qxv | A | null | 0 | A | Hapten | MTX | METHOTREXATE | IMMUNE SYSTEM | 03/02/11 | Structure of an Anti-Methotrexate CDR1-4 Graft VHH Antibody in Complex with Methotrexate | LAMA GLAMA | lama glama | null | lama glama | Fanning, S.W., Horn, J.R. | 2.5 | X-RAY DIFFRACTION | 0.279 | 0.230 | false | true | IGHV1 | null | null | 0 | -11.45684 | Unknown | null | TBD |
3nac | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/01/10 | Crystal structure of Fab15 Mut7 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Luo, J. | 1.8 | X-RAY DIFFRACTION | 0.212 | 0.184 | false | true | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
7vuz | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 11/04/21 | Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with PAMP-12, state2 | HOMO SAPIENS | homo sapiens | null | homo sapiens | homo sapiens | Yu, L., Fang, Y. | 2.89 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
6v8z | O | R | 0 | M | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 12/12/19 | VRC03 and 10-1074 Bound BG505 F14 HIV-1 SOSIP Envelope Trimer Structure | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Henderson, R., Acharya, P. | 2.9 | ELECTRON MICROSCOPY | null | null | false | true | unknown | IGKV3 | Kappa | null | null | null | null | null |
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