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TongjiZhanglab
/

chrombert

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30.3 GB

1 contributor

History: 28 commits

TongjiZhanglab's picture

Update regulator list of mouse

721c67a verified about 1 month ago

.gitattributes

2.76 kB
upload hg38 200bp version 6 months ago
README.md

1.37 kB
Update README.md 4 months ago
demo.tar.gz

1.87 GB
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Upload demo.tar.gz about 1 year ago
hg38.fa
3.27 GB
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Upload hg38.fa over 1 year ago
hg38_1kb_accessibility_signal_mean.npy

17.1 MB
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Upload 12 files 3 months ago
hg38_1kb_gene_meta.tsv

5.27 MB
Upload 12 files 3 months ago
hg38_1kb_region_emb.npy

3.28 GB
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Upload the 1kb region embeddings for hg38 3 months ago
hg38_1kb_regulator_emb.npy

1.65 MB
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Upload 12 files 3 months ago
hg38_200bp_accessibility_signal_mean.npy

39.4 MB
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hg38_200bp_gene_meta.tsv

4.13 MB
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hg38_2kb_accessibility_signal_mean.npy

10.4 MB
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hg38_2kb_gene_meta.tsv

5.63 MB
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hg38_4kb_accessibility_signal_mean.npy

5.57 MB
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hg38_4kb_gene_meta.tsv

5.74 MB
Upload 12 files 3 months ago
hg38_6k_1kb.hdf5.gz

2.65 GB
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Upload 7 files over 1 year ago
hg38_6k_1kb_cistrome_cell_prompt_chr1_cache.h5

1.99 GB
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update files for cistrome imputation about 1 year ago
hg38_6k_1kb_expression_cell_prompt_cache.pkl
Detected Pickle imports (3)
- "numpy.ndarray",
- "numpy.dtype",
- "numpy.core.multiarray._reconstruct"
How to fix it?
94.2 kB
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Upload 7 files over 1 year ago
hg38_6k_1kb_pretrain.ckpt
Detected Pickle imports (4)
- "torch.BFloat16Storage",
- "collections.OrderedDict",
- "torch.FloatStorage",
- "torch._utils._rebuild_tensor_v2"
What is a pickle import?
228 MB
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Upload 7 files over 1 year ago
hg38_6k_1kb_prompt_cistrome.ckpt
Detected Pickle imports (4)
- "torch.BFloat16Storage",
- "collections.OrderedDict",
- "torch.FloatStorage",
- "torch._utils._rebuild_tensor_v2"
What is a pickle import?
392 MB
xet

update files for cistrome imputation about 1 year ago
hg38_6k_1kb_prompt_expression.ckpt
Detected Pickle imports (4)
- "torch.BFloat16Storage",
- "collections.OrderedDict",
- "torch.FloatStorage",
- "torch._utils._rebuild_tensor_v2"
What is a pickle import?
423 MB
xet

update files for cistrome imputation about 1 year ago
hg38_6k_1kb_region.bed

67.1 MB
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add config files over 1 year ago
hg38_6k_1kb_regulator_prompt_chr1_cache.h5

2.27 GB
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update files for cistrome imputation about 1 year ago
hg38_6k_200bp.hdf5.gz

5.63 GB
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upload hg38 200bp version 6 months ago
hg38_6k_200bp_pretrain.ckpt

199 MB
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upload ckpts 5 months ago
hg38_6k_200bp_region.bed

156 MB
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upload hg38 200bp version 6 months ago
hg38_6k_2kb.hdf5.gz

1.75 GB
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upload of hg38 2kb version 6 months ago
hg38_6k_2kb_pretrain.ckpt

199 MB
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upload ckpts 5 months ago
hg38_6k_2kb_region.bed

40.5 MB
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upload of hg38 2kb version 6 months ago
hg38_6k_4kb.hdf5.gz

1.04 GB
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upload hg38 4kb version 6 months ago
hg38_6k_4kb_pretrain.ckpt
Detected Pickle imports (4)
- "torch.FloatStorage",
- "torch._utils._rebuild_tensor_v2",
- "collections.OrderedDict",
- "torch.BFloat16Storage"
What is a pickle import?
199 MB
xet

upload ckpts 5 months ago
hg38_6k_4kb_region.bed

21.4 MB
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upload hg38 4kb version 6 months ago
hg38_6k_factors_list.txt

5.98 kB
update of meta infomation about 1 year ago
hg38_6k_mask_matrix.tsv

13.8 MB
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update of meta infomation about 1 year ago
hg38_6k_meta.json

550 kB
update of meta infomation about 1 year ago
hg38_6k_meta.tsv

499 kB
update of meta infomation about 1 year ago
hg38_6k_regulators_list.txt

6.7 kB
update of meta infomation about 1 year ago
mm10_1kb_accessibility_signal_mean.npy

12.2 MB
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Upload 12 files 3 months ago
mm10_1kb_gene_meta.tsv

4.28 MB
Upload 12 files 3 months ago
mm10_1kb_region_emb.npy

2.35 GB
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Upload the 1kb region embeddings for mm10 3 months ago
mm10_5k_1kb.hdf5.gz

1.6 GB
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update of mouse version files 4 months ago
mm10_5k_1kb_pretrain.ckpt
Detected Pickle imports (4)
- "torch.BFloat16Storage",
- "collections.OrderedDict",
- "torch.FloatStorage",
- "torch._utils._rebuild_tensor_v2"
What is a pickle import?
228 MB
xet

Rename mm10_5k_pretrain.ckpt to mm10_5k_1kb_pretrain.ckpt 12 months ago
mm10_5k_1kb_prompt_cistrome.ckpt
Detected Pickle imports (4)
- "collections.OrderedDict",
- "torch.BFloat16Storage",
- "torch._utils._rebuild_tensor_v2",
- "torch.FloatStorage"
What is a pickle import?
292 MB
xet

Upload checkpoint for mouse cistromes imputation 3 months ago
mm10_5k_1kb_region.bed

47.7 MB
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Upload 12 files 3 months ago
mm10_5k_mask_matrix.tsv

7.94 MB
Update metadata of mouse about 1 month ago
mm10_5k_meta.json

389 kB
Update metadata of mouse about 1 month ago
mm10_5k_meta.tsv

328 kB
Update metadata of mouse about 1 month ago
mm10_5k_regulators_list.txt

4.3 kB
Update regulator list of mouse about 1 month ago
pbmc10k_scgpt_cell_prompt_cache.pkl
Detected Pickle imports (3)
- "numpy.dtype",
- "numpy.core.multiarray._reconstruct",
- "numpy.ndarray"
How to fix it?
24.9 MB
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Upload 2 files over 1 year ago