README.md

metadata

language:
  - en
license: mit
size_categories:
  - 100K<n<1M
task_categories:
  - other
pretty_name: Protap
tags:
  - biology
configs:
  - config_name: AFP
    data_files:
      - split: test
        path:
          - AFP/nrPDB-GO_test.csv
  - config_name: PCSP
    data_files:
      - split: train
        path:
          - PCSP/train_C14005.pkl
          - PCSP/train_M10003.pkl
      - split: test
        path:
          - PCSP/test_C14005.pkl
          - PCSP/test_M10003.pkl
  - config_name: PLI_DAVIS
    data_files:
      - split: test
        path:
          - PLI_DAVIS/davis_drug_pdb_data.txt
          - PLI_DAVIS/pli_structure.json
          - PLI_DAVIS/data/*
  - config_name: PROTACs
    data_files:
      - split: test
        path:
          - PROTACs/PROTAC_clean_structure_label.txt
          - PROTACs/protac_poi_e3ligase_structure.json
          - PROTACs/e3_ligand/*
          - PROTACs/linker/*
          - PROTACs/warhead/*

This dataset is for the paper Protap: A Benchmark for Protein Modeling on Realistic Downstream Applications.

The code for Protap is available at https://github.com/findshuo/Protap.