Datasets:
| language: | |
| - en | |
| license: mit | |
| size_categories: | |
| - 100K<n<1M | |
| task_categories: | |
| - other | |
| pretty_name: Protap | |
| tags: | |
| - biology | |
| configs: | |
| - config_name: AFP | |
| data_files: | |
| - split: test | |
| path: | |
| - AFP/nrPDB-GO_test.csv | |
| - config_name: PCSP | |
| data_files: | |
| - split: train | |
| path: | |
| - PCSP/train_C14005.pkl | |
| - PCSP/train_M10003.pkl | |
| - split: test | |
| path: | |
| - PCSP/test_C14005.pkl | |
| - PCSP/test_M10003.pkl | |
| - config_name: PLI_DAVIS | |
| data_files: | |
| - split: test | |
| path: | |
| - PLI_DAVIS/davis_drug_pdb_data.txt | |
| - PLI_DAVIS/pli_structure.json | |
| - PLI_DAVIS/data/* | |
| - config_name: PROTACs | |
| data_files: | |
| - split: test | |
| path: | |
| - PROTACs/PROTAC_clean_structure_label.txt | |
| - PROTACs/protac_poi_e3ligase_structure.json | |
| - PROTACs/e3_ligand/* | |
| - PROTACs/linker/* | |
| - PROTACs/warhead/* | |
| This dataset is for the paper [Protap: A Benchmark for Protein Modeling on Realistic Downstream Applications](https://huggingface.co/papers/2506.02052). | |
| The code for Protap is available at [https://github.com/findshuo/Protap](https://github.com/findshuo/Protap). |