Datasets:

genomic-benchmarks
/

BEACON

configs:
  - config_name: Isoform
    data_files:
      - split: train
        path: Isoform/Isoform_train.csv.gz
      - split: validation
        path: Isoform/Isoform_val.csv.gz
      - split: test
        path: Isoform/Isoform_test.csv.gz
  - config_name: MeanRibosomeLoading
    data_files:
      - split: train
        path: MeanRibosomeLoading/MeanRibosomeLoading_train.csv.gz
      - split: validation
        path: MeanRibosomeLoading/MeanRibosomeLoading_val.csv.gz
      - split: test
        path: MeanRibosomeLoading/MeanRibosomeLoading_test.csv.gz
  - config_name: CRISPROnTarget
    data_files:
      - split: train
        path: CRISPROnTarget/CRISPROnTarget_train.csv.gz
      - split: validation
        path: CRISPROnTarget/CRISPROnTarget_val.csv.gz
      - split: test
        path: CRISPROnTarget/CRISPROnTarget_test.csv.gz

BEACON

Overview

BEACON is a collection of RNA benchmarking datasets. This respository includes datasets from BEACON that have been filtered by our criteria to be included in our quality-curated genomic benchmark datasets.

Dataset structure

The repository is organized as follows:

BEACON/
├── README.md
├── Isoform/
│   ├── Isoform_train.csv.gz
│   ├── Isoform_val.csv.gz
│   └── Isoform_test.csv.gz
├── MeanRibosomeLoading/
│   ├── MeanRibosomeLoading_train.csv.gz
│   ├── MeanRibosomeLoading_val.csv.gz
│   └── MeanRibosomeLoading_test.csv.gz
└── CRISPROnTarget/
    ├── CRISPROnTarget_train.csv.gz
    ├── CRISPROnTarget_val.csv.gz
    └── CRISPROnTarget_test.csv.gz