README.md

---
configs:
- config_name: Isoform
  data_files:
  - split: train
    path: Isoform/Isoform_train.csv.gz
  - split: validation
    path: Isoform/Isoform_val.csv.gz
  - split: test
    path: Isoform/Isoform_test.csv.gz

- config_name: MeanRibosomeLoading
  data_files:
  - split: train
    path: MeanRibosomeLoading/MeanRibosomeLoading_train.csv.gz
  - split: validation
    path: MeanRibosomeLoading/MeanRibosomeLoading_val.csv.gz
  - split: test
    path: MeanRibosomeLoading/MeanRibosomeLoading_test.csv.gz

- config_name: CRISPROnTarget
  data_files:
  - split: train
    path: CRISPROnTarget/CRISPROnTarget_train.csv.gz
  - split: validation
    path: CRISPROnTarget/CRISPROnTarget_val.csv.gz
  - split: test
    path: CRISPROnTarget/CRISPROnTarget_test.csv.gz
---

# BEACON

## Overview

[BEACON](https://www.proceedings.com/content/079/079017-2949open.pdf) is a collection of RNA benchmarking datasets. This respository includes datasets from BEACON that have been filtered by our criteria to be included in our quality-curated genomic benchmark datasets. 

## Dataset structure

The repository is organized as follows:
```
BEACON/
├── README.md
├── Isoform/
│   ├── Isoform_train.csv.gz
│   ├── Isoform_val.csv.gz
│   └── Isoform_test.csv.gz
├── MeanRibosomeLoading/
│   ├── MeanRibosomeLoading_train.csv.gz
│   ├── MeanRibosomeLoading_val.csv.gz
│   └── MeanRibosomeLoading_test.csv.gz
└── CRISPROnTarget/
    ├── CRISPROnTarget_train.csv.gz
    ├── CRISPROnTarget_val.csv.gz
    └── CRISPROnTarget_test.csv.gz
```