after_merge
stringlengths 28
79.6k
| before_merge
stringlengths 20
79.6k
| url
stringlengths 38
71
| full_traceback
stringlengths 43
922k
| traceback_type
stringclasses 555
values |
|---|---|---|---|---|
def execute(args, parser):
spec = MatchSpec(args.match_spec)
if spec.get_exact_value("subdir"):
subdirs = (spec.get_exact_value("subdir"),)
elif args.platform:
subdirs = (args.platform,)
else:
subdirs = context.subdirs
with Spinner(
"Loading channels", not context.verbosity and not context.quiet, context.json
):
spec_channel = spec.get_exact_value("channel")
channel_urls = (spec_channel,) if spec_channel else context.channels
matches = sorted(
SubdirData.query_all(channel_urls, subdirs, spec),
key=lambda rec: (rec.name, VersionOrder(rec.version), rec.build),
)
if not matches:
channels_urls = tuple(
calculate_channel_urls(
channel_urls=context.channels,
prepend=not args.override_channels,
platform=subdirs[0],
use_local=args.use_local,
)
)
from ..exceptions import PackagesNotFoundError
raise PackagesNotFoundError((text_type(spec),), channels_urls)
if context.json:
json_obj = defaultdict(list)
for match in matches:
json_obj[match.name].append(match)
stdout_json(json_obj)
elif args.info:
for record in matches:
pretty_record(record)
else:
builder = [
"%-25s %-15s %15s %-15s"
% (
"Name",
"Version",
"Build",
"Channel",
)
]
for record in matches:
builder.append(
"%-25s %-15s %15s %-15s"
% (
record.name,
record.version,
record.build,
record.schannel,
)
)
print("\n".join(builder))
|
def execute(args, parser):
spec = MatchSpec(args.match_spec)
if spec.get_exact_value("subdir"):
subdirs = (spec.get_exact_value("subdir"),)
elif args.platform:
subdirs = (args.platform,)
else:
subdirs = context.subdirs
with spinner(
"Loading channels", not context.verbosity and not context.quiet, context.json
):
spec_channel = spec.get_exact_value("channel")
channel_urls = (spec_channel,) if spec_channel else context.channels
matches = sorted(
SubdirData.query_all(channel_urls, subdirs, spec),
key=lambda rec: (rec.name, VersionOrder(rec.version), rec.build),
)
if not matches:
channels_urls = tuple(
calculate_channel_urls(
channel_urls=context.channels,
prepend=not args.override_channels,
platform=subdirs[0],
use_local=args.use_local,
)
)
from ..exceptions import PackagesNotFoundError
raise PackagesNotFoundError((text_type(spec),), channels_urls)
if context.json:
json_obj = defaultdict(list)
for match in matches:
json_obj[match.name].append(match)
stdout_json(json_obj)
elif args.info:
for record in matches:
pretty_record(record)
else:
builder = [
"%-25s %-15s %15s %-15s"
% (
"Name",
"Version",
"Build",
"Channel",
)
]
for record in matches:
builder.append(
"%-25s %-15s %15s %-15s"
% (
record.name,
record.version,
record.build,
record.schannel,
)
)
sys.stdout.write("\n".join(builder))
sys.stdout.write("\n")
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def pretty_record(record):
def push_line(display_name, attr_name):
value = getattr(record, attr_name, None)
if value is not None:
builder.append("%-12s: %s" % (display_name, value))
builder = []
builder.append(record.name + " " + record.version + " " + record.build)
builder.append("-" * len(builder[0]))
push_line("file name", "fn")
push_line("name", "name")
push_line("version", "version")
push_line("build string", "build")
push_line("build number", "build_number")
builder.append("%-12s: %s" % ("size", human_bytes(record.size)))
push_line("arch", "arch")
push_line("constrains", "constrains")
push_line("platform", "platform")
push_line("license", "license")
push_line("subdir", "subdir")
push_line("url", "url")
push_line("md5", "md5")
builder.append("%-12s: %s" % ("dependencies", dashlist(record.depends)))
builder.append("\n")
print("\n".join(builder))
|
def pretty_record(record):
def push_line(display_name, attr_name):
value = getattr(record, attr_name, None)
if value is not None:
builder.append("%-12s: %s" % (display_name, value))
builder = []
builder.append(record.name + " " + record.version + " " + record.build)
builder.append("-" * len(builder[0]))
push_line("file name", "fn")
push_line("name", "name")
push_line("version", "version")
push_line("build string", "build")
push_line("build number", "build_number")
builder.append("%-12s: %s" % ("size", human_bytes(record.size)))
push_line("arch", "arch")
push_line("constrains", "constrains")
push_line("platform", "platform")
push_line("license", "license")
push_line("subdir", "subdir")
push_line("url", "url")
push_line("md5", "md5")
builder.append("%-12s: %s" % ("dependencies", dashlist(record.depends)))
builder.append("\n")
sys.stdout.write("\n".join(builder))
sys.stdout.write("\n")
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def __init__(self, message, enabled=True, json=False):
self.message = message
self.enabled = enabled
self.json = json
self._stop_running = Event()
self._spinner_thread = Thread(target=self._start_spinning)
self._indicator_length = len(next(self.spinner_cycle)) + 1
self.fh = sys.stdout
self.show_spin = (
enabled and not json and hasattr(self.fh, "isatty") and self.fh.isatty()
)
|
def __init__(self, enable_spin=True):
self._stop_running = Event()
self._spinner_thread = Thread(target=self._start_spinning)
self._indicator_length = len(next(self.spinner_cycle)) + 1
self.fh = sys.stdout
self.show_spin = enable_spin and hasattr(self.fh, "isatty") and self.fh.isatty()
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def start(self):
if self.show_spin:
self._spinner_thread.start()
elif not self.json:
self.fh.write("...working... ")
self.fh.flush()
|
def start(self):
if self.show_spin:
self._spinner_thread.start()
else:
self.fh.write("...working... ")
self.fh.flush()
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def stop(self):
if self.show_spin:
self._stop_running.set()
self._spinner_thread.join()
self.show_spin = False
|
def stop(self):
if self.show_spin:
self._stop_running.set()
self._spinner_thread.join()
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def _start_spinning(self):
try:
while not self._stop_running.is_set():
self.fh.write(next(self.spinner_cycle) + " ")
self.fh.flush()
sleep(0.10)
self.fh.write("\b" * self._indicator_length)
except EnvironmentError as e:
if e.errno in (EPIPE, ESHUTDOWN):
self.stop()
else:
raise
|
def _start_spinning(self):
while not self._stop_running.is_set():
self.fh.write(next(self.spinner_cycle) + " ")
self.fh.flush()
sleep(0.10)
self.fh.write("\b" * self._indicator_length)
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def __init__(self, description, enabled=True, json=False):
"""
Args:
description (str):
The name of the progress bar, shown on left side of output.
enabled (bool):
If False, usage is a no-op.
json (bool):
If true, outputs json progress to stdout rather than a progress bar.
Currently, the json format assumes this is only used for "fetch", which
maintains backward compatibility with conda 4.3 and earlier behavior.
"""
self.description = description
self.enabled = enabled
self.json = json
if json:
pass
elif enabled:
bar_format = "{desc}{bar} | {percentage:3.0f}% "
try:
self.pbar = tqdm(
desc=description, bar_format=bar_format, ascii=True, total=1
)
except EnvironmentError as e:
if e.errno in (EPIPE, ESHUTDOWN):
self.enabled = False
else:
raise
|
def __init__(self, description, enabled=True, json=False):
"""
Args:
description (str):
The name of the progress bar, shown on left side of output.
enabled (bool):
If False, usage is a no-op.
json (bool):
If true, outputs json progress to stdout rather than a progress bar.
Currently, the json format assumes this is only used for "fetch", which
maintains backward compatibility with conda 4.3 and earlier behavior.
"""
self.description = description
self.enabled = enabled
self.json = json
if json:
pass
elif enabled:
bar_format = "{desc}{bar} | {percentage:3.0f}% "
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def update_to(self, fraction):
try:
if self.json and self.enabled:
sys.stdout.write(
'{"fetch":"%s","finished":false,"maxval":1,"progress":%f}\n\0'
% (self.description, fraction)
)
elif self.enabled:
self.pbar.update(fraction - self.pbar.n)
except EnvironmentError as e:
if e.errno in (EPIPE, ESHUTDOWN):
self.enabled = False
else:
raise
|
def update_to(self, fraction):
if self.json:
sys.stdout.write(
'{"fetch":"%s","finished":false,"maxval":1,"progress":%f}\n\0'
% (self.description, fraction)
)
elif self.enabled:
self.pbar.update(fraction - self.pbar.n)
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def close(self):
if self.enabled and self.json:
sys.stdout.write(
'{"fetch":"%s","finished":true,"maxval":1,"progress":1}\n\0'
% self.description
)
sys.stdout.flush()
elif self.enabled:
self.pbar.close()
|
def close(self):
try:
if self.json:
sys.stdout.write(
'{"fetch":"%s","finished":true,"maxval":1,"progress":1}\n\0'
% self.description
)
sys.stdout.flush()
elif self.enabled:
self.pbar.close()
except (IOError, OSError) as e:
# Ignore BrokenPipeError and errors related to stdout or stderr being
# closed by a downstream program.
if e.errno not in (EPIPE, ESHUTDOWN):
raise
self.enabled = False
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def prepare(self):
if self._prepared:
return
self.transaction_context = {}
with Spinner(
"Preparing transaction",
not context.verbosity and not context.quiet,
context.json,
):
for stp in itervalues(self.prefix_setups):
grps = self._prepare(
self.transaction_context,
stp.target_prefix,
stp.unlink_precs,
stp.link_precs,
stp.remove_specs,
stp.update_specs,
)
self.prefix_action_groups[stp.target_prefix] = PrefixActionGroup(*grps)
self._prepared = True
|
def prepare(self):
if self._prepared:
return
self.transaction_context = {}
with spinner(
"Preparing transaction",
not context.verbosity and not context.quiet,
context.json,
):
for stp in itervalues(self.prefix_setups):
grps = self._prepare(
self.transaction_context,
stp.target_prefix,
stp.unlink_precs,
stp.link_precs,
stp.remove_specs,
stp.update_specs,
)
self.prefix_action_groups[stp.target_prefix] = PrefixActionGroup(*grps)
self._prepared = True
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def verify(self):
if not self._prepared:
self.prepare()
assert not context.dry_run
if context.safety_checks == SafetyChecks.disabled:
self._verified = True
return
with Spinner(
"Verifying transaction",
not context.verbosity and not context.quiet,
context.json,
):
exceptions = self._verify(self.prefix_setups, self.prefix_action_groups)
if exceptions:
try:
maybe_raise(CondaMultiError(exceptions), context)
except:
rm_rf(self.transaction_context["temp_dir"])
raise
log.info(exceptions)
self._verified = True
|
def verify(self):
if not self._prepared:
self.prepare()
assert not context.dry_run
if context.safety_checks == SafetyChecks.disabled:
self._verified = True
return
with spinner(
"Verifying transaction",
not context.verbosity and not context.quiet,
context.json,
):
exceptions = self._verify(self.prefix_setups, self.prefix_action_groups)
if exceptions:
try:
maybe_raise(CondaMultiError(exceptions), context)
except:
rm_rf(self.transaction_context["temp_dir"])
raise
log.info(exceptions)
self._verified = True
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def _execute(cls, all_action_groups):
with signal_handler(conda_signal_handler), time_recorder("unlink_link_execute"):
pkg_idx = 0
try:
with Spinner(
"Executing transaction",
not context.verbosity and not context.quiet,
context.json,
):
for pkg_idx, axngroup in enumerate(all_action_groups):
cls._execute_actions(pkg_idx, axngroup)
except CondaMultiError as e:
action, is_unlink = (None, axngroup.type == "unlink")
prec = axngroup.pkg_data
log.error(
"An error occurred while %s package '%s'.\n"
"%r\n"
"Attempting to roll back.\n",
"uninstalling" if is_unlink else "installing",
prec and prec.dist_str(),
e.errors[0],
)
# reverse all executed packages except the one that failed
rollback_excs = []
if context.rollback_enabled:
with Spinner(
"Rolling back transaction",
not context.verbosity and not context.quiet,
context.json,
):
failed_pkg_idx = pkg_idx
reverse_actions = reversed(
tuple(enumerate(take(failed_pkg_idx, all_action_groups)))
)
for pkg_idx, axngroup in reverse_actions:
excs = cls._reverse_actions(pkg_idx, axngroup)
rollback_excs.extend(excs)
raise CondaMultiError(
tuple(
concatv(
(e.errors if isinstance(e, CondaMultiError) else (e,)),
rollback_excs,
)
)
)
else:
for axngroup in all_action_groups:
for action in axngroup.actions:
action.cleanup()
|
def _execute(cls, all_action_groups):
with signal_handler(conda_signal_handler), time_recorder("unlink_link_execute"):
pkg_idx = 0
try:
with spinner(
"Executing transaction",
not context.verbosity and not context.quiet,
context.json,
):
for pkg_idx, axngroup in enumerate(all_action_groups):
cls._execute_actions(pkg_idx, axngroup)
except CondaMultiError as e:
action, is_unlink = (None, axngroup.type == "unlink")
prec = axngroup.pkg_data
log.error(
"An error occurred while %s package '%s'.\n"
"%r\n"
"Attempting to roll back.\n",
"uninstalling" if is_unlink else "installing",
prec and prec.dist_str(),
e.errors[0],
)
# reverse all executed packages except the one that failed
rollback_excs = []
if context.rollback_enabled:
with spinner(
"Rolling back transaction",
not context.verbosity and not context.quiet,
context.json,
):
failed_pkg_idx = pkg_idx
reverse_actions = reversed(
tuple(enumerate(take(failed_pkg_idx, all_action_groups)))
)
for pkg_idx, axngroup in reverse_actions:
excs = cls._reverse_actions(pkg_idx, axngroup)
rollback_excs.extend(excs)
raise CondaMultiError(
tuple(
concatv(
(e.errors if isinstance(e, CondaMultiError) else (e,)),
rollback_excs,
)
)
)
else:
for axngroup in all_action_groups:
for action in axngroup.actions:
action.cleanup()
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def solve_for_transaction(
self,
deps_modifier=NULL,
prune=NULL,
ignore_pinned=NULL,
force_remove=NULL,
force_reinstall=False,
):
"""Gives an UnlinkLinkTransaction instance that can be used to execute the solution
on an environment.
Args:
deps_modifier (DepsModifier):
See :meth:`solve_final_state`.
prune (bool):
See :meth:`solve_final_state`.
ignore_pinned (bool):
See :meth:`solve_final_state`.
force_remove (bool):
See :meth:`solve_final_state`.
force_reinstall (bool):
See :meth:`solve_for_diff`.
Returns:
UnlinkLinkTransaction:
"""
with Spinner(
"Solving environment", not context.verbosity and not context.quiet, context.json
):
if self.prefix == context.root_prefix and context.enable_private_envs:
# This path has the ability to generate a multi-prefix transaction. The basic logic
# is in the commented out get_install_transaction() function below. Exercised at
# the integration level in the PrivateEnvIntegrationTests in test_create.py.
raise NotImplementedError()
else:
unlink_precs, link_precs = self.solve_for_diff(
deps_modifier, prune, ignore_pinned, force_remove, force_reinstall
)
stp = PrefixSetup(
self.prefix,
unlink_precs,
link_precs,
self.specs_to_remove,
self.specs_to_add,
)
# TODO: Only explicitly requested remove and update specs are being included in
# History right now. Do we need to include other categories from the solve?
if context.notify_outdated_conda:
conda_newer_spec = MatchSpec("conda >%s" % CONDA_VERSION)
if not any(conda_newer_spec.match(prec) for prec in link_precs):
conda_newer_records = sorted(
SubdirData.query_all(self.channels, self.subdirs, conda_newer_spec),
key=lambda x: VersionOrder(x.version),
)
if conda_newer_records:
latest_version = conda_newer_records[-1].version
print(
dedent("""
==> WARNING: A newer version of conda exists. <==
current version: %s
latest version: %s
Please update conda by running
$ conda update -n base conda
""")
% (CONDA_VERSION, latest_version),
file=sys.stderr,
)
return UnlinkLinkTransaction(stp)
|
def solve_for_transaction(
self,
deps_modifier=NULL,
prune=NULL,
ignore_pinned=NULL,
force_remove=NULL,
force_reinstall=False,
):
"""Gives an UnlinkLinkTransaction instance that can be used to execute the solution
on an environment.
Args:
deps_modifier (DepsModifier):
See :meth:`solve_final_state`.
prune (bool):
See :meth:`solve_final_state`.
ignore_pinned (bool):
See :meth:`solve_final_state`.
force_remove (bool):
See :meth:`solve_final_state`.
force_reinstall (bool):
See :meth:`solve_for_diff`.
Returns:
UnlinkLinkTransaction:
"""
with spinner(
"Solving environment", not context.verbosity and not context.quiet, context.json
):
if self.prefix == context.root_prefix and context.enable_private_envs:
# This path has the ability to generate a multi-prefix transaction. The basic logic
# is in the commented out get_install_transaction() function below. Exercised at
# the integration level in the PrivateEnvIntegrationTests in test_create.py.
raise NotImplementedError()
else:
unlink_precs, link_precs = self.solve_for_diff(
deps_modifier, prune, ignore_pinned, force_remove, force_reinstall
)
stp = PrefixSetup(
self.prefix,
unlink_precs,
link_precs,
self.specs_to_remove,
self.specs_to_add,
)
# TODO: Only explicitly requested remove and update specs are being included in
# History right now. Do we need to include other categories from the solve?
if context.notify_outdated_conda:
conda_newer_spec = MatchSpec("conda >%s" % CONDA_VERSION)
if not any(conda_newer_spec.match(prec) for prec in link_precs):
conda_newer_records = sorted(
SubdirData.query_all(self.channels, self.subdirs, conda_newer_spec),
key=lambda x: VersionOrder(x.version),
)
if conda_newer_records:
latest_version = conda_newer_records[-1].version
sys.stderr.write(
dedent("""
==> WARNING: A newer version of conda exists. <==
current version: %s
latest version: %s
Please update conda by running
$ conda update -n base conda
""")
% (CONDA_VERSION, latest_version)
)
return UnlinkLinkTransaction(stp)
|
https://github.com/conda/conda/issues/6582
|
error: BrokenPipeError(32, 'Broken pipe')
command: /home/ubuntu/anaconda3/envs/tensorflow_p36/bin/conda install -p /home/ubuntu/anaconda3/envs/tensorflow_p36 tensorflow-gpu -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-1044-aws ubuntu/16.04 glibc/2.23
_messageid: -9223372036845075603
_messagetime: 1514219033248 / 2017-12-25 10:23:53
Traceback (most recent call last):
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 281, in handle_txn
progressive_fetch_extract.execute()
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 575, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 590, in _execute_actions
progress_bar = ProgressBar(desc, not context.verbosity and not context.quiet, context.json)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 365, in __init__
self.pbar = tqdm(desc=description, bar_format=bar_format, ascii=True, total=1)
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 767, in __init__
self.postfix, unit_divisor))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 201, in print_status
fp_write('\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File "/home/ubuntu/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def verify(self):
validation_error = super(PrefixReplaceLinkAction, self).verify()
if validation_error:
return validation_error
if islink(self.source_full_path):
log.trace(
"ignoring prefix update for symlink with source path %s",
self.source_full_path,
)
# return
assert False, "I don't think this is the right place to ignore this"
self.intermediate_path = join(
self.transaction_context["temp_dir"], text_type(uuid4())
)
log.trace("copying %s => %s", self.source_full_path, self.intermediate_path)
create_link(self.source_full_path, self.intermediate_path, LinkType.copy)
make_writable(self.intermediate_path)
try:
log.trace("rewriting prefixes in %s", self.target_full_path)
update_prefix(
self.intermediate_path,
context.target_prefix_override or self.target_prefix,
self.prefix_placeholder,
self.file_mode,
)
except _PaddingError:
raise PaddingError(
self.target_full_path, self.prefix_placeholder, len(self.prefix_placeholder)
)
sha256_in_prefix = compute_sha256sum(self.intermediate_path)
self.prefix_path_data = PathDataV1.from_objects(
self.prefix_path_data,
file_mode=self.file_mode,
path_type=PathType.hardlink,
prefix_placeholder=self.prefix_placeholder,
sha256_in_prefix=sha256_in_prefix,
)
self._verified = True
|
def verify(self):
validation_error = super(PrefixReplaceLinkAction, self).verify()
if validation_error:
return validation_error
if islink(self.source_full_path):
log.trace(
"ignoring prefix update for symlink with source path %s",
self.source_full_path,
)
# return
assert False, "I don't think this is the right place to ignore this"
self.intermediate_path = join(
self.transaction_context["temp_dir"], text_type(uuid4())
)
log.trace("copying %s => %s", self.source_full_path, self.intermediate_path)
create_link(self.source_full_path, self.intermediate_path, LinkType.copy)
try:
log.trace("rewriting prefixes in %s", self.target_full_path)
update_prefix(
self.intermediate_path,
context.target_prefix_override or self.target_prefix,
self.prefix_placeholder,
self.file_mode,
)
except _PaddingError:
raise PaddingError(
self.target_full_path, self.prefix_placeholder, len(self.prefix_placeholder)
)
sha256_in_prefix = compute_sha256sum(self.intermediate_path)
self.prefix_path_data = PathDataV1.from_objects(
self.prefix_path_data,
file_mode=self.file_mode,
path_type=PathType.hardlink,
prefix_placeholder=self.prefix_placeholder,
sha256_in_prefix=sha256_in_prefix,
)
self._verified = True
|
https://github.com/conda/conda/issues/6852
|
Traceback (most recent call last):
File "/miniconda/lib/python3.6/site-packages/conda/exceptions.py", line 772, in __call__
return func(*args, **kwargs)
File "/miniconda/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/miniconda/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 77, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/miniconda/lib/python3.6/site-packages/conda/cli/main_create.py", line 11, in execute
install(args, parser, 'create')
File "/miniconda/lib/python3.6/site-packages/conda/cli/install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/miniconda/lib/python3.6/site-packages/conda/cli/install.py", line 285, in handle_txn
unlink_link_transaction.execute()
File "/miniconda/lib/python3.6/site-packages/conda/core/link.py", line 220, in execute
self.verify()
File "/miniconda/lib/python3.6/site-packages/conda/common/io.py", line 441, in decorated
return f(*args, **kwds)
File "/miniconda/lib/python3.6/site-packages/conda/core/link.py", line 207, in verify
exceptions = self._verify(self.prefix_setups, self.prefix_action_groups)
File "/miniconda/lib/python3.6/site-packages/conda/core/link.py", line 460, in _verify
cls._verify_transaction_level(prefix_setups),
File "/miniconda/lib/python3.6/site-packages/conda/core/link.py", line 455, in <genexpr>
exceptions = tuple(exc for exc in concatv(
File "/miniconda/lib/python3.6/site-packages/conda/core/link.py", line 323, in _verify_individual_level
error_result = axn.verify()
File "/miniconda/lib/python3.6/site-packages/conda/core/path_actions.py", line 410, in verify
self.file_mode)
File "/miniconda/lib/python3.6/site-packages/conda/core/portability.py", line 57, in update_prefix
update_file_in_place_as_binary(realpath(path), _update_prefix)
File "/miniconda/lib/python3.6/site-packages/conda/gateways/disk/update.py", line 33, in update_file_in_place_as_binary
fh = exp_backoff_fn(open, file_full_path, 'rb+')
File "/miniconda/lib/python3.6/site-packages/conda/gateways/disk/__init__.py", line 23, in exp_backoff_fn
return fn(*args, **kwargs)
PermissionError: [Errno 13] Permission denied: '/tmp/tmpp4kwvm4j/be616029-6651-4227-a448-4e595cd8e473'
|
PermissionError
|
def _pip_install_via_requirements(prefix, specs, args, *_, **kwargs):
"""
Installs the pip dependencies in specs using a temporary pip requirements file.
Args
----
prefix: string
The path to the python and pip executables.
specs: iterable of strings
Each element should be a valid pip dependency.
See: https://pip.pypa.io/en/stable/user_guide/#requirements-files
https://pip.pypa.io/en/stable/reference/pip_install/#requirements-file-format
"""
try:
pip_workdir = op.dirname(op.abspath(args.file))
except AttributeError:
pip_workdir = None
requirements = None
try:
# Generate the temporary requirements file
requirements = tempfile.NamedTemporaryFile(
mode="w",
prefix="condaenv.",
suffix=".requirements.txt",
dir=pip_workdir,
delete=False,
)
requirements.write("\n".join(specs))
requirements.close()
# pip command line...
args, pip_version = pip_args(prefix)
if args is None:
return
pip_cmd = args + ["install", "-r", requirements.name]
# ...run it
process = subprocess.Popen(pip_cmd, cwd=pip_workdir, universal_newlines=True)
process.communicate()
if process.returncode != 0:
raise CondaValueError("pip returned an error")
finally:
# Win/Appveyor does not like it if we use context manager + delete=True.
# So we delete the temporary file in a finally block.
if requirements is not None and op.isfile(requirements.name):
os.remove(requirements.name)
|
def _pip_install_via_requirements(prefix, specs, args, *_, **kwargs):
"""
Installs the pip dependencies in specs using a temporary pip requirements file.
Args
----
prefix: string
The path to the python and pip executables.
specs: iterable of strings
Each element should be a valid pip dependency.
See: https://pip.pypa.io/en/stable/user_guide/#requirements-files
https://pip.pypa.io/en/stable/reference/pip_install/#requirements-file-format
"""
try:
pip_workdir = op.dirname(op.abspath(args.file))
except AttributeError:
pip_workdir = None
requirements = None
try:
# Generate the temporary requirements file
requirements = tempfile.NamedTemporaryFile(
mode="w",
prefix="condaenv.",
suffix=".requirements.txt",
dir=pip_workdir,
delete=False,
)
requirements.write("\n".join(specs))
requirements.close()
# pip command line...
args, pip_version = pip_args(prefix)
pip_cmd = args + ["install", "-r", requirements.name]
# ...run it
process = subprocess.Popen(pip_cmd, cwd=pip_workdir, universal_newlines=True)
process.communicate()
if process.returncode != 0:
raise CondaValueError("pip returned an error")
finally:
# Win/Appveyor does not like it if we use context manager + delete=True.
# So we delete the temporary file in a finally block.
if requirements is not None and op.isfile(requirements.name):
os.remove(requirements.name)
|
https://github.com/conda/conda/issues/6208
|
Traceback (most recent call last):
File "/home/snadar/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 640, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/snadar/anaconda3/lib/python3.6/site-packages/conda_env/cli/main_create.py", line 108, in execute
installer.install(prefix, pkg_specs, args, env)
File "/home/snadar/anaconda3/lib/python3.6/site-packages/conda_env/installers/pip.py", line 8, in install
pip_cmd = pip_args(prefix) + ['install', ] + specs
TypeError: can only concatenate list (not "NoneType") to list
|
TypeError
|
def configure_parser_config(sub_parsers):
descr = (
dedent("""
Modify configuration values in .condarc. This is modeled after the git
config command. Writes to the user .condarc file (%s) by default.
""")
% escaped_user_rc_path
)
# Note, the extra whitespace in the list keys is on purpose. It's so the
# formatting from help2man is still valid YAML (otherwise it line wraps the
# keys like "- conda - defaults"). Technically the parser here still won't
# recognize it because it removes the indentation, but at least it will be
# valid.
additional_descr = (
"""
See `conda config --describe` or %s/docs/config.html
for details on all the options that can go in .condarc.
Examples:
Display all configuration values as calculated and compiled:
conda config --show
Display all identified configuration sources:
conda config --show-sources
Describe all available configuration options:
conda config --describe
Add the conda-canary channel:
conda config --add channels conda-canary
Set the output verbosity to level 3 (highest):
conda config --set verbosity 3
Get the channels defined in the system .condarc:
conda config --get channels --system
Add the 'foo' Binstar channel:
conda config --add channels foo
Disable the 'show_channel_urls' option:
conda config --set show_channel_urls no
"""
% CONDA_HOMEPAGE_URL
)
p = sub_parsers.add_parser(
"config",
description=descr,
help=descr,
epilog=additional_descr,
)
add_parser_json(p)
# TODO: use argparse.FileType
location = p.add_mutually_exclusive_group()
location.add_argument(
"--system",
action="store_true",
help="""Write to the system .condarc file ({system}). Otherwise writes to the user
config file ({user}).""".format(
system=escaped_sys_rc_path, user=escaped_user_rc_path
),
)
location.add_argument(
"--env",
action="store_true",
help="Write to the active conda environment .condarc file (%s). "
"If no environment is active, write to the user config file (%s)."
""
% (
os.getenv("CONDA_PREFIX", "<no active environment>").replace("%", "%%"),
escaped_user_rc_path,
),
)
location.add_argument(
"--file",
action="store",
help="""Write to the given file. Otherwise writes to the user config file ({user})
or the file path given by the 'CONDARC' environment variable, if it is set
(default: %(default)s).""".format(user=escaped_user_rc_path),
default=os.environ.get("CONDARC", user_rc_path),
)
# XXX: Does this really have to be mutually exclusive. I think the below
# code will work even if it is a regular group (although combination of
# --add and --remove with the same keys will not be well-defined).
action = p.add_mutually_exclusive_group(required=True)
action.add_argument(
"--show",
nargs="*",
default=None,
help="Display configuration values as calculated and compiled. "
"If no arguments given, show information for all configuration values.",
)
action.add_argument(
"--show-sources",
action="store_true",
help="Display all identified configuration sources.",
)
action.add_argument(
"--validate",
action="store_true",
help="Validate all configuration sources.",
)
action.add_argument(
"--describe",
nargs="*",
default=None,
help="Describe given configuration parameters. If no arguments given, show "
"information for all configuration parameters.",
)
action.add_argument(
"--write-default",
action="store_true",
help="Write the default configuration to a file. "
"Equivalent to `conda config --describe > ~/.condarc` "
"when no --env, --system, or --file flags are given.",
)
action.add_argument(
"--get",
nargs="*",
action="store",
help="Get a configuration value.",
default=None,
metavar="KEY",
)
action.add_argument(
"--append",
nargs=2,
action="append",
help="""Add one configuration value to the end of a list key.""",
default=[],
metavar=("KEY", "VALUE"),
)
action.add_argument(
"--prepend",
"--add",
nargs=2,
action="append",
help="""Add one configuration value to the beginning of a list key.""",
default=[],
metavar=("KEY", "VALUE"),
)
action.add_argument(
"--set",
nargs=2,
action="append",
help="""Set a boolean or string key""",
default=[],
metavar=("KEY", "VALUE"),
)
action.add_argument(
"--remove",
nargs=2,
action="append",
help="""Remove a configuration value from a list key. This removes
all instances of the value.""",
default=[],
metavar=("KEY", "VALUE"),
)
action.add_argument(
"--remove-key",
nargs=1,
action="append",
help="""Remove a configuration key (and all its values).""",
default=[],
metavar="KEY",
)
action.add_argument(
"--stdin",
action="store_true",
help="Apply configuration information given in yaml format piped through stdin.",
)
p.add_argument(
"-f",
"--force",
action="store_true",
default=NULL,
help=SUPPRESS, # TODO: No longer used. Remove in a future release.
)
p.set_defaults(func=".main_config.execute")
|
def configure_parser_config(sub_parsers):
descr = (
dedent("""
Modify configuration values in .condarc. This is modeled after the git
config command. Writes to the user .condarc file (%s) by default.
""")
% user_rc_path
)
# Note, the extra whitespace in the list keys is on purpose. It's so the
# formatting from help2man is still valid YAML (otherwise it line wraps the
# keys like "- conda - defaults"). Technically the parser here still won't
# recognize it because it removes the indentation, but at least it will be
# valid.
additional_descr = (
"""
See `conda config --describe` or %s/docs/config.html
for details on all the options that can go in .condarc.
Examples:
Display all configuration values as calculated and compiled:
conda config --show
Display all identified configuration sources:
conda config --show-sources
Describe all available configuration options:
conda config --describe
Add the conda-canary channel:
conda config --add channels conda-canary
Set the output verbosity to level 3 (highest):
conda config --set verbosity 3
Get the channels defined in the system .condarc:
conda config --get channels --system
Add the 'foo' Binstar channel:
conda config --add channels foo
Disable the 'show_channel_urls' option:
conda config --set show_channel_urls no
"""
% CONDA_HOMEPAGE_URL
)
p = sub_parsers.add_parser(
"config",
description=descr,
help=descr,
epilog=additional_descr,
)
add_parser_json(p)
# TODO: use argparse.FileType
location = p.add_mutually_exclusive_group()
location.add_argument(
"--system",
action="store_true",
help="""Write to the system .condarc file ({system}). Otherwise writes to the user
config file ({user}).""".format(system=sys_rc_path, user=user_rc_path),
)
location.add_argument(
"--env",
action="store_true",
help="Write to the active conda environment .condarc file (%s). "
"If no environment is active, write to the user config file (%s)."
"" % (os.getenv("CONDA_PREFIX", "<no active environment>"), user_rc_path),
)
location.add_argument(
"--file",
action="store",
help="""Write to the given file. Otherwise writes to the user config file ({user})
or the file path given by the 'CONDARC' environment variable, if it is set
(default: %(default)s).""".format(user=user_rc_path),
default=os.environ.get("CONDARC", user_rc_path),
)
# XXX: Does this really have to be mutually exclusive. I think the below
# code will work even if it is a regular group (although combination of
# --add and --remove with the same keys will not be well-defined).
action = p.add_mutually_exclusive_group(required=True)
action.add_argument(
"--show",
nargs="*",
default=None,
help="Display configuration values as calculated and compiled. "
"If no arguments given, show information for all configuration values.",
)
action.add_argument(
"--show-sources",
action="store_true",
help="Display all identified configuration sources.",
)
action.add_argument(
"--validate",
action="store_true",
help="Validate all configuration sources.",
)
action.add_argument(
"--describe",
nargs="*",
default=None,
help="Describe given configuration parameters. If no arguments given, show "
"information for all configuration parameters.",
)
action.add_argument(
"--write-default",
action="store_true",
help="Write the default configuration to a file. "
"Equivalent to `conda config --describe > ~/.condarc` "
"when no --env, --system, or --file flags are given.",
)
action.add_argument(
"--get",
nargs="*",
action="store",
help="Get a configuration value.",
default=None,
metavar="KEY",
)
action.add_argument(
"--append",
nargs=2,
action="append",
help="""Add one configuration value to the end of a list key.""",
default=[],
metavar=("KEY", "VALUE"),
)
action.add_argument(
"--prepend",
"--add",
nargs=2,
action="append",
help="""Add one configuration value to the beginning of a list key.""",
default=[],
metavar=("KEY", "VALUE"),
)
action.add_argument(
"--set",
nargs=2,
action="append",
help="""Set a boolean or string key""",
default=[],
metavar=("KEY", "VALUE"),
)
action.add_argument(
"--remove",
nargs=2,
action="append",
help="""Remove a configuration value from a list key. This removes
all instances of the value.""",
default=[],
metavar=("KEY", "VALUE"),
)
action.add_argument(
"--remove-key",
nargs=1,
action="append",
help="""Remove a configuration key (and all its values).""",
default=[],
metavar="KEY",
)
action.add_argument(
"--stdin",
action="store_true",
help="Apply configuration information given in yaml format piped through stdin.",
)
p.add_argument(
"-f",
"--force",
action="store_true",
default=NULL,
help=SUPPRESS, # TODO: No longer used. Remove in a future release.
)
p.set_defaults(func=".main_config.execute")
|
https://github.com/conda/conda/issues/6645
|
Traceback (most recent call last):
File "E:\Miniconda3\lib\site-packages\conda\exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "E:\Miniconda3\lib\site-packages\conda\cli\main.py", line 71, in _main
args = p.parse_args(args[1:])
File "E:\Miniconda3\lib\argparse.py", line 1730, in parse_args
args, argv = self.parse_known_args(args, namespace)
File "E:\Miniconda3\lib\argparse.py", line 1762, in parse_known_args
namespace, args = self._parse_known_args(args, namespace)
File "E:\Miniconda3\lib\argparse.py", line 1968, in _parse_known_args
start_index = consume_optional(start_index)
File "E:\Miniconda3\lib\argparse.py", line 1908, in consume_optional
take_action(action, args, option_string)
File "E:\Miniconda3\lib\argparse.py", line 1836, in take_action
action(self, namespace, argument_values, option_string)
File "E:\Miniconda3\lib\argparse.py", line 1020, in __call__
parser.print_help()
File "E:\Miniconda3\lib\site-packages\conda\cli\conda_argparse.py", line 149, in print_help
super(ArgumentParser, self).print_help()
File "E:\Miniconda3\lib\argparse.py", line 2362, in print_help
self._print_message(self.format_help(), file)
File "E:\Miniconda3\lib\argparse.py", line 2346, in format_help
return formatter.format_help()
File "E:\Miniconda3\lib\argparse.py", line 282, in format_help
help = self._root_section.format_help()
File "E:\Miniconda3\lib\argparse.py", line 213, in format_help
item_help = join([func(*args) for func, args in self.items])
File "E:\Miniconda3\lib\argparse.py", line 213, in <listcomp>
item_help = join([func(*args) for func, args in self.items])
File "E:\Miniconda3\lib\argparse.py", line 213, in format_help
item_help = join([func(*args) for func, args in self.items])
File "E:\Miniconda3\lib\argparse.py", line 213, in <listcomp>
item_help = join([func(*args) for func, args in self.items])
File "E:\Miniconda3\lib\argparse.py", line 531, in _format_action
parts.append(self._format_action(subaction))
File "E:\Miniconda3\lib\argparse.py", line 519, in _format_action
help_text = self._expand_help(action)
File "E:\Miniconda3\lib\argparse.py", line 606, in _expand_help
return self._get_help_string(action) % params
ValueError: unsupported format character 'U' (0x55) at index 140
|
ValueError
|
def revert_actions(prefix, revision=-1, index=None):
# TODO: If revision raise a revision error, should always go back to a safe revision
# change
h = History(prefix)
user_requested_specs = itervalues(h.get_requested_specs_map())
try:
state = h.get_state(revision)
except IndexError:
raise CondaIndexError("no such revision: %d" % revision)
curr = h.get_state()
if state == curr:
return UnlinkLinkTransaction()
_supplement_index_with_prefix(index, prefix)
r = Resolve(index)
state = r.dependency_sort({d.name: d for d in (Dist(s) for s in state)})
curr = set(Dist(s) for s in curr)
link_dists = tuple(d for d in state if not is_linked(prefix, d))
unlink_dists = set(curr) - set(state)
# check whether it is a safe revision
for dist in concatv(link_dists, unlink_dists):
if dist not in index:
from .exceptions import CondaRevisionError
msg = "Cannot revert to {}, since {} is not in repodata".format(
revision, dist
)
raise CondaRevisionError(msg)
unlink_precs = tuple(index[d] for d in unlink_dists)
link_precs = tuple(index[d] for d in link_dists)
stp = PrefixSetup(prefix, unlink_precs, link_precs, (), user_requested_specs)
txn = UnlinkLinkTransaction(stp)
return txn
|
def revert_actions(prefix, revision=-1, index=None):
# TODO: If revision raise a revision error, should always go back to a safe revision
# change
h = History(prefix)
h.update()
user_requested_specs = itervalues(h.get_requested_specs_map())
try:
state = h.get_state(revision)
except IndexError:
raise CondaIndexError("no such revision: %d" % revision)
curr = h.get_state()
if state == curr:
return {} # TODO: return txn with nothing_to_do
_supplement_index_with_prefix(index, prefix)
r = Resolve(index)
state = r.dependency_sort({d.name: d for d in (Dist(s) for s in state)})
curr = set(Dist(s) for s in curr)
link_dists = tuple(d for d in state if not is_linked(prefix, d))
unlink_dists = set(curr) - set(state)
# dists = (Dist(s) for s in state)
# actions = ensure_linked_actions(dists, prefix)
# for dist in curr - state:
# add_unlink(actions, Dist(dist))
# check whether it is a safe revision
for dist in concatv(link_dists, unlink_dists):
if dist not in index:
from .exceptions import CondaRevisionError
msg = "Cannot revert to {}, since {} is not in repodata".format(
revision, dist
)
raise CondaRevisionError(msg)
unlink_precs = tuple(index[d] for d in unlink_dists)
link_precs = tuple(index[d] for d in link_dists)
stp = PrefixSetup(prefix, unlink_precs, link_precs, (), user_requested_specs)
txn = UnlinkLinkTransaction(stp)
return txn
|
https://github.com/conda/conda/issues/6628
|
error: AttributeError("'dict' object has no attribute 'get_pfe'",)
command: C:\Program Files\Anaconda3\Scripts\conda install --revision 4
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.5.2 Windows/8.1 Windows/6.3.9600
_messageid: -9223372036843575560
_messagetime: 1514442489595 / 2017-12-28 00:28:09
Traceback (most recent call last):
File "C:\Program Files\Anaconda3\lib\site-packages\conda\exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "C:\Program Files\Anaconda3\lib\site-packages\conda\cli\main.py", line 78, in _main
exit_code = do_call(args, p)
File "C:\Program Files\Anaconda3\lib\site-packages\conda\cli\conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "C:\Program Files\Anaconda3\lib\site-packages\conda\cli\main_install.py", line 11, in execute
install(args, parser, 'install')
File "C:\Program Files\Anaconda3\lib\site-packages\conda\cli\install.py", line 232, in install
progressive_fetch_extract = unlink_link_transaction.get_pfe()
AttributeError: 'dict' object has no attribute 'get_pfe'
|
AttributeError
|
def handle_exception(self, exc_val, exc_tb):
return_code = getattr(exc_val, "return_code", None)
if return_code == 0:
return 0
if isinstance(exc_val, CondaError):
return self.handle_application_exception(exc_val, exc_tb)
if isinstance(exc_val, UnicodeError) and PY2:
return self.handle_application_exception(EncodingError(exc_val), exc_tb)
if isinstance(exc_val, EnvironmentError):
if getattr(exc_val, "errno", None) == ENOSPC:
return self.handle_application_exception(NoSpaceLeftError(exc_val), exc_tb)
if isinstance(exc_val, MemoryError):
return self.handle_application_exception(CondaMemoryError(exc_val), exc_tb)
if isinstance(exc_val, KeyboardInterrupt):
self._print_conda_exception(CondaError("KeyboardInterrupt"), _format_exc())
return 1
if isinstance(exc_val, SystemExit):
return exc_val.code
return self.handle_unexpected_exception(exc_val, exc_tb)
|
def handle_exception(self, exc_val, exc_tb):
return_code = getattr(exc_val, "return_code", None)
if return_code == 0:
return 0
if isinstance(exc_val, CondaError):
return self.handle_application_exception(exc_val, exc_tb)
if isinstance(exc_val, UnicodeError) and PY2:
return self.handle_application_exception(EncodingError(exc_val), exc_tb)
if isinstance(exc_val, EnvironmentError):
if getattr(exc_val, "errno", None) == ENOSPC:
return self.handle_application_exception(NoSpaceLeftError(exc_val), exc_tb)
if isinstance(exc_val, KeyboardInterrupt):
self._print_conda_exception(CondaError("KeyboardInterrupt"), _format_exc())
return 1
if isinstance(exc_val, SystemExit):
return exc_val.code
return self.handle_unexpected_exception(exc_val, exc_tb)
|
https://github.com/conda/conda/issues/6699
|
error: MemoryError()
command: C:\Users\Jason\Anaconda3\Scripts\conda install rise
user_agent: conda/4.4.7 requests/2.18.4 CPython/3.6.3 Windows/10 Windows/10.0.16299
_messageid: -9223372036837525402
_messagetime: 1515517517366 / 2018-01-09 11:05:17
MemoryError
During handling of the above exception, another exception occurred:
MemoryError
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\exceptions.py", line 743, in __call__
return func(*args, **kwargs)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\cli\main.py", line 78, in _main
exit_code = do_call(args, p)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\cli\conda_argparse.py", line 76, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\cli\main_install.py", line 11, in execute
install(args, parser, 'install')
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\cli\install.py", line 236, in install
force_reinstall=context.force,
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\core\solve.py", line 504, in solve_for_transaction
force_remove, force_reinstall)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\core\solve.py", line 437, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\core\solve.py", line 145, in solve_final_state
solution = tuple(Dist(d) for d in prefix_data.iter_records())
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\core\linked_data.py", line 90, in iter_records
return itervalues(self._prefix_records)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\core\linked_data.py", line 110, in _prefix_records
return self.__prefix_records or self.load() or self.__prefix_records
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\core\linked_data.py", line 48, in load
self._load_single_record(meta_file)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\core\linked_data.py", line 116, in _load_single_record
prefix_record = PrefixRecord(**json_data)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 718, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 735, in __init__
setattr(self, key, kwargs[key])
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 427, in __set__
instance.__dict__[self.name] = self.validate(instance, self.box(instance, instance.__class__, val))
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 666, in box
return self._type(**val)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 718, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 735, in __init__
setattr(self, key, kwargs[key])
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 427, in __set__
instance.__dict__[self.name] = self.validate(instance, self.box(instance, instance.__class__, val))
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 590, in box
return self._type(v if isinstance(v, et) else et(**v) for v in val)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 590, in <genexpr>
return self._type(v if isinstance(v, et) else et(**v) for v in val)
File "C:\Users\Jason\Anaconda3\lib\site-packages\conda\_vendor\auxlib\entity.py", line 718, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
MemoryError
|
MemoryError
|
def __init__(self, shell, arguments=None):
self.shell = shell
self._raw_arguments = arguments
if PY2:
self.environ = {
ensure_fs_path_encoding(k): ensure_fs_path_encoding(v)
for k, v in iteritems(os.environ)
}
else:
self.environ = os.environ.copy()
if shell == "posix":
self.pathsep_join = ":".join
self.path_conversion = native_path_to_unix
self.script_extension = ".sh"
self.tempfile_extension = (
None # write instructions to stdout rather than a temp file
)
self.shift_args = 0
self.command_join = "\n"
self.unset_var_tmpl = "unset %s"
self.export_var_tmpl = "export %s='%s'"
self.set_var_tmpl = "%s='%s'"
self.run_script_tmpl = '. "%s"'
elif shell == "csh":
self.pathsep_join = ":".join
self.path_conversion = native_path_to_unix
self.script_extension = ".csh"
self.tempfile_extension = (
None # write instructions to stdout rather than a temp file
)
self.shift_args = 0
self.command_join = ";\n"
self.unset_var_tmpl = "unset %s"
self.export_var_tmpl = 'setenv %s "%s"'
self.set_var_tmpl = "set %s='%s'"
self.run_script_tmpl = 'source "%s"'
elif shell == "xonsh":
self.pathsep_join = ":".join
self.path_conversion = native_path_to_unix
self.script_extension = ".xsh"
self.tempfile_extension = ".xsh"
self.shift_args = 0
self.command_join = "\n"
self.unset_var_tmpl = "del $%s"
self.export_var_tmpl = "$%s = '%s'"
self.run_script_tmpl = 'source "%s"'
elif shell == "cmd.exe":
self.pathsep_join = ";".join
self.path_conversion = path_identity
self.script_extension = ".bat"
self.tempfile_extension = ".bat"
self.shift_args = 1
self.command_join = "\n"
self.unset_var_tmpl = "@SET %s="
self.export_var_tmpl = '@SET "%s=%s"'
self.run_script_tmpl = '@CALL "%s"'
elif shell == "fish":
self.pathsep_join = '" "'.join
self.path_conversion = native_path_to_unix
self.script_extension = ".fish"
self.tempfile_extension = (
None # write instructions to stdout rather than a temp file
)
self.shift_args = 0
self.command_join = ";\n"
self.unset_var_tmpl = "set -e %s"
self.export_var_tmpl = 'set -gx %s "%s"'
self.run_script_tmpl = 'source "%s"'
elif shell == "powershell":
self.pathsep_join = ";".join
self.path_conversion = path_identity
self.script_extension = ".ps1"
self.tempfile_extension = (
None # write instructions to stdout rather than a temp file
)
self.shift_args = 0
self.command_join = "\n"
self.unset_var_tmpl = "Remove-Variable %s"
self.export_var_tmpl = '$env:%s = "%s"'
self.run_script_tmpl = '. "%s"'
else:
raise NotImplementedError()
|
def __init__(self, shell, arguments=None):
self.shell = shell
self._raw_arguments = arguments
if shell == "posix":
self.pathsep_join = ":".join
self.path_conversion = native_path_to_unix
self.script_extension = ".sh"
self.tempfile_extension = (
None # write instructions to stdout rather than a temp file
)
self.shift_args = 0
self.command_join = "\n"
self.unset_var_tmpl = "unset %s"
self.export_var_tmpl = "export %s='%s'"
self.set_var_tmpl = "%s='%s'"
self.run_script_tmpl = '. "%s"'
elif shell == "csh":
self.pathsep_join = ":".join
self.path_conversion = native_path_to_unix
self.script_extension = ".csh"
self.tempfile_extension = (
None # write instructions to stdout rather than a temp file
)
self.shift_args = 0
self.command_join = ";\n"
self.unset_var_tmpl = "unset %s"
self.export_var_tmpl = 'setenv %s "%s"'
self.set_var_tmpl = "set %s='%s'"
self.run_script_tmpl = 'source "%s"'
elif shell == "xonsh":
self.pathsep_join = ":".join
self.path_conversion = native_path_to_unix
self.script_extension = ".xsh"
self.tempfile_extension = ".xsh"
self.shift_args = 0
self.command_join = "\n"
self.unset_var_tmpl = "del $%s"
self.export_var_tmpl = "$%s = '%s'"
self.run_script_tmpl = 'source "%s"'
elif shell == "cmd.exe":
self.pathsep_join = ";".join
self.path_conversion = path_identity
self.script_extension = ".bat"
self.tempfile_extension = ".bat"
self.shift_args = 1
self.command_join = "\n"
self.unset_var_tmpl = "@SET %s="
self.export_var_tmpl = '@SET "%s=%s"'
self.run_script_tmpl = '@CALL "%s"'
elif shell == "fish":
self.pathsep_join = '" "'.join
self.path_conversion = native_path_to_unix
self.script_extension = ".fish"
self.tempfile_extension = (
None # write instructions to stdout rather than a temp file
)
self.shift_args = 0
self.command_join = ";\n"
self.unset_var_tmpl = "set -e %s"
self.export_var_tmpl = 'set -gx %s "%s"'
self.run_script_tmpl = 'source "%s"'
elif shell == "powershell":
self.pathsep_join = ";".join
self.path_conversion = path_identity
self.script_extension = ".ps1"
self.tempfile_extension = (
None # write instructions to stdout rather than a temp file
)
self.shift_args = 0
self.command_join = "\n"
self.unset_var_tmpl = "Remove-Variable %s"
self.export_var_tmpl = '$env:%s = "%s"'
self.run_script_tmpl = '. "%s"'
else:
raise NotImplementedError()
|
https://github.com/conda/conda/issues/6739
|
Traceback (most recent call last):
File "/anaconda/lib/python2.7/site-packages/conda/gateways/logging.py", line 64, in emit
msg = self.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 734, in format
return fmt.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 465, in format
record.message = record.getMessage()
File "/anaconda/lib/python2.7/logging/__init__.py", line 329, in getMessage
msg = msg % self.args
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 43, in __repr__
return '%s: %s' % (self.__class__.__name__, text_type(self))
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 47, in __str__
return text_type(self.message % self._kwargs)
ValueError: unsupported format character '{' (0x7b) at index 513
Logged from file exceptions.py, line 724
|
ValueError
|
def build_activate(self, env_name_or_prefix):
if re.search(r"\\|/", env_name_or_prefix):
prefix = expand(env_name_or_prefix)
if not isdir(join(prefix, "conda-meta")):
from .exceptions import EnvironmentLocationNotFound
raise EnvironmentLocationNotFound(prefix)
elif env_name_or_prefix in (ROOT_ENV_NAME, "root"):
prefix = context.root_prefix
else:
prefix = locate_prefix_by_name(env_name_or_prefix)
prefix = normpath(prefix)
# query environment
old_conda_shlvl = int(self.environ.get("CONDA_SHLVL", 0))
old_conda_prefix = self.environ.get("CONDA_PREFIX")
max_shlvl = context.max_shlvl
if old_conda_prefix == prefix:
return self.build_reactivate()
if self.environ.get("CONDA_PREFIX_%s" % (old_conda_shlvl - 1)) == prefix:
# in this case, user is attempting to activate the previous environment,
# i.e. step back down
return self.build_deactivate()
activate_scripts = self._get_activate_scripts(prefix)
conda_default_env = self._default_env(prefix)
conda_prompt_modifier = self._prompt_modifier(conda_default_env)
assert 0 <= old_conda_shlvl <= max_shlvl
set_vars = {}
if old_conda_shlvl == 0:
new_path = self.pathsep_join(self._add_prefix_to_path(prefix))
export_vars = {
"CONDA_PYTHON_EXE": self.path_conversion(sys.executable),
"PATH": new_path,
"CONDA_PREFIX": prefix,
"CONDA_SHLVL": old_conda_shlvl + 1,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
deactivate_scripts = ()
elif old_conda_shlvl == max_shlvl:
new_path = self.pathsep_join(
self._replace_prefix_in_path(old_conda_prefix, prefix)
)
export_vars = {
"PATH": new_path,
"CONDA_PREFIX": prefix,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
deactivate_scripts = self._get_deactivate_scripts(old_conda_prefix)
else:
new_path = self.pathsep_join(self._add_prefix_to_path(prefix))
export_vars = {
"PATH": new_path,
"CONDA_PREFIX": prefix,
"CONDA_PREFIX_%d" % old_conda_shlvl: old_conda_prefix,
"CONDA_SHLVL": old_conda_shlvl + 1,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
deactivate_scripts = ()
self._update_prompt(set_vars, conda_prompt_modifier)
if on_win and self.shell == "cmd.exe":
import ctypes
export_vars.update(
{
"PYTHONIOENCODING": ctypes.cdll.kernel32.GetACP(),
}
)
return {
"unset_vars": (),
"set_vars": set_vars,
"export_vars": export_vars,
"deactivate_scripts": deactivate_scripts,
"activate_scripts": activate_scripts,
}
|
def build_activate(self, env_name_or_prefix):
if re.search(r"\\|/", env_name_or_prefix):
prefix = expand(env_name_or_prefix)
if not isdir(join(prefix, "conda-meta")):
from .exceptions import EnvironmentLocationNotFound
raise EnvironmentLocationNotFound(prefix)
elif env_name_or_prefix in (ROOT_ENV_NAME, "root"):
prefix = context.root_prefix
else:
prefix = locate_prefix_by_name(env_name_or_prefix)
prefix = normpath(prefix)
# query environment
old_conda_shlvl = int(os.getenv("CONDA_SHLVL", 0))
old_conda_prefix = os.getenv("CONDA_PREFIX")
max_shlvl = context.max_shlvl
if old_conda_prefix == prefix:
return self.build_reactivate()
if os.getenv("CONDA_PREFIX_%s" % (old_conda_shlvl - 1)) == prefix:
# in this case, user is attempting to activate the previous environment,
# i.e. step back down
return self.build_deactivate()
activate_scripts = self._get_activate_scripts(prefix)
conda_default_env = self._default_env(prefix)
conda_prompt_modifier = self._prompt_modifier(conda_default_env)
assert 0 <= old_conda_shlvl <= max_shlvl
set_vars = {}
if old_conda_shlvl == 0:
new_path = self.pathsep_join(self._add_prefix_to_path(prefix))
export_vars = {
"CONDA_PYTHON_EXE": self.path_conversion(sys.executable),
"PATH": new_path,
"CONDA_PREFIX": prefix,
"CONDA_SHLVL": old_conda_shlvl + 1,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
deactivate_scripts = ()
elif old_conda_shlvl == max_shlvl:
new_path = self.pathsep_join(
self._replace_prefix_in_path(old_conda_prefix, prefix)
)
export_vars = {
"PATH": new_path,
"CONDA_PREFIX": prefix,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
deactivate_scripts = self._get_deactivate_scripts(old_conda_prefix)
else:
new_path = self.pathsep_join(self._add_prefix_to_path(prefix))
export_vars = {
"PATH": new_path,
"CONDA_PREFIX": prefix,
"CONDA_PREFIX_%d" % old_conda_shlvl: old_conda_prefix,
"CONDA_SHLVL": old_conda_shlvl + 1,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
deactivate_scripts = ()
self._update_prompt(set_vars, conda_prompt_modifier)
if on_win and self.shell == "cmd.exe":
import ctypes
export_vars.update(
{
"PYTHONIOENCODING": ctypes.cdll.kernel32.GetACP(),
}
)
return {
"unset_vars": (),
"set_vars": set_vars,
"export_vars": export_vars,
"deactivate_scripts": deactivate_scripts,
"activate_scripts": activate_scripts,
}
|
https://github.com/conda/conda/issues/6739
|
Traceback (most recent call last):
File "/anaconda/lib/python2.7/site-packages/conda/gateways/logging.py", line 64, in emit
msg = self.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 734, in format
return fmt.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 465, in format
record.message = record.getMessage()
File "/anaconda/lib/python2.7/logging/__init__.py", line 329, in getMessage
msg = msg % self.args
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 43, in __repr__
return '%s: %s' % (self.__class__.__name__, text_type(self))
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 47, in __str__
return text_type(self.message % self._kwargs)
ValueError: unsupported format character '{' (0x7b) at index 513
Logged from file exceptions.py, line 724
|
ValueError
|
def build_deactivate(self):
# query environment
old_conda_shlvl = int(self.environ.get("CONDA_SHLVL", 0))
old_conda_prefix = self.environ.get("CONDA_PREFIX", None)
if old_conda_shlvl <= 0 or old_conda_prefix is None:
return {
"unset_vars": (),
"set_vars": {},
"export_vars": {},
"deactivate_scripts": (),
"activate_scripts": (),
}
deactivate_scripts = self._get_deactivate_scripts(old_conda_prefix)
new_conda_shlvl = old_conda_shlvl - 1
new_path = self.pathsep_join(self._remove_prefix_from_path(old_conda_prefix))
assert old_conda_shlvl > 0
set_vars = {}
if old_conda_shlvl == 1:
# TODO: warn conda floor
conda_prompt_modifier = ""
unset_vars = (
"CONDA_PREFIX",
"CONDA_DEFAULT_ENV",
"CONDA_PYTHON_EXE",
"CONDA_PROMPT_MODIFIER",
)
export_vars = {
"PATH": new_path,
"CONDA_SHLVL": new_conda_shlvl,
}
activate_scripts = ()
else:
new_prefix = self.environ.get("CONDA_PREFIX_%d" % new_conda_shlvl)
conda_default_env = self._default_env(new_prefix)
conda_prompt_modifier = self._prompt_modifier(conda_default_env)
unset_vars = ("CONDA_PREFIX_%d" % new_conda_shlvl,)
export_vars = {
"PATH": new_path,
"CONDA_SHLVL": new_conda_shlvl,
"CONDA_PREFIX": new_prefix,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
activate_scripts = self._get_activate_scripts(new_prefix)
self._update_prompt(set_vars, conda_prompt_modifier)
return {
"unset_vars": unset_vars,
"set_vars": set_vars,
"export_vars": export_vars,
"deactivate_scripts": deactivate_scripts,
"activate_scripts": activate_scripts,
}
|
def build_deactivate(self):
# query environment
old_conda_shlvl = int(os.getenv("CONDA_SHLVL", 0))
old_conda_prefix = os.getenv("CONDA_PREFIX", None)
if old_conda_shlvl <= 0 or old_conda_prefix is None:
return {
"unset_vars": (),
"set_vars": {},
"export_vars": {},
"deactivate_scripts": (),
"activate_scripts": (),
}
deactivate_scripts = self._get_deactivate_scripts(old_conda_prefix)
new_conda_shlvl = old_conda_shlvl - 1
new_path = self.pathsep_join(self._remove_prefix_from_path(old_conda_prefix))
assert old_conda_shlvl > 0
set_vars = {}
if old_conda_shlvl == 1:
# TODO: warn conda floor
conda_prompt_modifier = ""
unset_vars = (
"CONDA_PREFIX",
"CONDA_DEFAULT_ENV",
"CONDA_PYTHON_EXE",
"CONDA_PROMPT_MODIFIER",
)
export_vars = {
"PATH": new_path,
"CONDA_SHLVL": new_conda_shlvl,
}
activate_scripts = ()
else:
new_prefix = os.getenv("CONDA_PREFIX_%d" % new_conda_shlvl)
conda_default_env = self._default_env(new_prefix)
conda_prompt_modifier = self._prompt_modifier(conda_default_env)
unset_vars = ("CONDA_PREFIX_%d" % new_conda_shlvl,)
export_vars = {
"PATH": new_path,
"CONDA_SHLVL": new_conda_shlvl,
"CONDA_PREFIX": new_prefix,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
activate_scripts = self._get_activate_scripts(new_prefix)
self._update_prompt(set_vars, conda_prompt_modifier)
return {
"unset_vars": unset_vars,
"set_vars": set_vars,
"export_vars": export_vars,
"deactivate_scripts": deactivate_scripts,
"activate_scripts": activate_scripts,
}
|
https://github.com/conda/conda/issues/6739
|
Traceback (most recent call last):
File "/anaconda/lib/python2.7/site-packages/conda/gateways/logging.py", line 64, in emit
msg = self.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 734, in format
return fmt.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 465, in format
record.message = record.getMessage()
File "/anaconda/lib/python2.7/logging/__init__.py", line 329, in getMessage
msg = msg % self.args
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 43, in __repr__
return '%s: %s' % (self.__class__.__name__, text_type(self))
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 47, in __str__
return text_type(self.message % self._kwargs)
ValueError: unsupported format character '{' (0x7b) at index 513
Logged from file exceptions.py, line 724
|
ValueError
|
def build_reactivate(self):
conda_prefix = self.environ.get("CONDA_PREFIX")
conda_shlvl = int(self.environ.get("CONDA_SHLVL", -1))
if not conda_prefix or conda_shlvl < 1:
# no active environment, so cannot reactivate; do nothing
return {
"unset_vars": (),
"set_vars": {},
"export_vars": {},
"deactivate_scripts": (),
"activate_scripts": (),
}
conda_default_env = self.environ.get(
"CONDA_DEFAULT_ENV", self._default_env(conda_prefix)
)
# environment variables are set only to aid transition from conda 4.3 to conda 4.4
return {
"unset_vars": (),
"set_vars": {},
"export_vars": {
"CONDA_SHLVL": conda_shlvl,
"CONDA_PROMPT_MODIFIER": self._prompt_modifier(conda_default_env),
},
"deactivate_scripts": self._get_deactivate_scripts(conda_prefix),
"activate_scripts": self._get_activate_scripts(conda_prefix),
}
|
def build_reactivate(self):
conda_prefix = os.environ.get("CONDA_PREFIX")
conda_shlvl = int(os.environ.get("CONDA_SHLVL", -1))
if not conda_prefix or conda_shlvl < 1:
# no active environment, so cannot reactivate; do nothing
return {
"unset_vars": (),
"set_vars": {},
"export_vars": {},
"deactivate_scripts": (),
"activate_scripts": (),
}
conda_default_env = os.environ.get(
"CONDA_DEFAULT_ENV", self._default_env(conda_prefix)
)
# environment variables are set only to aid transition from conda 4.3 to conda 4.4
return {
"unset_vars": (),
"set_vars": {},
"export_vars": {
"CONDA_SHLVL": conda_shlvl,
"CONDA_PROMPT_MODIFIER": self._prompt_modifier(conda_default_env),
},
"deactivate_scripts": self._get_deactivate_scripts(conda_prefix),
"activate_scripts": self._get_activate_scripts(conda_prefix),
}
|
https://github.com/conda/conda/issues/6739
|
Traceback (most recent call last):
File "/anaconda/lib/python2.7/site-packages/conda/gateways/logging.py", line 64, in emit
msg = self.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 734, in format
return fmt.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 465, in format
record.message = record.getMessage()
File "/anaconda/lib/python2.7/logging/__init__.py", line 329, in getMessage
msg = msg % self.args
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 43, in __repr__
return '%s: %s' % (self.__class__.__name__, text_type(self))
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 47, in __str__
return text_type(self.message % self._kwargs)
ValueError: unsupported format character '{' (0x7b) at index 513
Logged from file exceptions.py, line 724
|
ValueError
|
def _get_starting_path_list(self):
path = self.environ["PATH"]
if on_win:
# On Windows, the Anaconda Python interpreter prepends sys.prefix\Library\bin on
# startup. It's a hack that allows users to avoid using the correct activation
# procedure; a hack that needs to go away because it doesn't add all the paths.
# See: https://github.com/AnacondaRecipes/python-feedstock/blob/master/recipe/0005-Win32-Ensure-Library-bin-is-in-os.environ-PATH.patch # NOQA
# But, we now detect if that has happened because:
# 1. In future we would like to remove this hack and require real activation.
# 2. We should not assume that the Anaconda Python interpreter is being used.
path_split = path.split(os.pathsep)
library_bin = r"%s\Library\bin" % (sys.prefix)
# ^^^ deliberately the same as: https://github.com/AnacondaRecipes/python-feedstock/blob/8e8aee4e2f4141ecfab082776a00b374c62bb6d6/recipe/0005-Win32-Ensure-Library-bin-is-in-os.environ-PATH.patch#L20 # NOQA
if normpath(path_split[0]) == normpath(library_bin):
return path_split[1:]
else:
return path_split
else:
return path.split(os.pathsep)
|
def _get_starting_path_list(self):
path = os.environ["PATH"]
if on_win:
# On Windows, the Anaconda Python interpreter prepends sys.prefix\Library\bin on
# startup. It's a hack that allows users to avoid using the correct activation
# procedure; a hack that needs to go away because it doesn't add all the paths.
# See: https://github.com/AnacondaRecipes/python-feedstock/blob/master/recipe/0005-Win32-Ensure-Library-bin-is-in-os.environ-PATH.patch # NOQA
# But, we now detect if that has happened because:
# 1. In future we would like to remove this hack and require real activation.
# 2. We should not assume that the Anaconda Python interpreter is being used.
path_split = path.split(os.pathsep)
library_bin = r"%s\Library\bin" % (sys.prefix)
# ^^^ deliberately the same as: https://github.com/AnacondaRecipes/python-feedstock/blob/8e8aee4e2f4141ecfab082776a00b374c62bb6d6/recipe/0005-Win32-Ensure-Library-bin-is-in-os.environ-PATH.patch#L20 # NOQA
if normpath(path_split[0]) == normpath(library_bin):
return path_split[1:]
else:
return path_split
else:
return path.split(os.pathsep)
|
https://github.com/conda/conda/issues/6739
|
Traceback (most recent call last):
File "/anaconda/lib/python2.7/site-packages/conda/gateways/logging.py", line 64, in emit
msg = self.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 734, in format
return fmt.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 465, in format
record.message = record.getMessage()
File "/anaconda/lib/python2.7/logging/__init__.py", line 329, in getMessage
msg = msg % self.args
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 43, in __repr__
return '%s: %s' % (self.__class__.__name__, text_type(self))
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 47, in __str__
return text_type(self.message % self._kwargs)
ValueError: unsupported format character '{' (0x7b) at index 513
Logged from file exceptions.py, line 724
|
ValueError
|
def _update_prompt(self, set_vars, conda_prompt_modifier):
if not context.changeps1:
return
if self.shell == "posix":
ps1 = self.environ.get("PS1", "")
current_prompt_modifier = self.environ.get("CONDA_PROMPT_MODIFIER")
if current_prompt_modifier:
ps1 = re.sub(re.escape(current_prompt_modifier), r"", ps1)
# Because we're using single-quotes to set shell variables, we need to handle the
# proper escaping of single quotes that are already part of the string.
# Best solution appears to be https://stackoverflow.com/a/1250279
ps1 = ps1.replace("'", "'\"'\"'")
set_vars.update(
{
"PS1": conda_prompt_modifier + ps1,
}
)
elif self.shell == "csh":
prompt = self.environ.get("prompt", "")
current_prompt_modifier = self.environ.get("CONDA_PROMPT_MODIFIER")
if current_prompt_modifier:
prompt = re.sub(re.escape(current_prompt_modifier), r"", prompt)
set_vars.update(
{
"prompt": conda_prompt_modifier + prompt,
}
)
|
def _update_prompt(self, set_vars, conda_prompt_modifier):
if not context.changeps1:
return
if self.shell == "posix":
ps1 = os.environ.get("PS1", "")
current_prompt_modifier = os.environ.get("CONDA_PROMPT_MODIFIER")
if current_prompt_modifier:
ps1 = re.sub(re.escape(current_prompt_modifier), r"", ps1)
# Because we're using single-quotes to set shell variables, we need to handle the
# proper escaping of single quotes that are already part of the string.
# Best solution appears to be https://stackoverflow.com/a/1250279
ps1 = ps1.replace("'", "'\"'\"'")
set_vars.update(
{
"PS1": conda_prompt_modifier + ps1,
}
)
elif self.shell == "csh":
prompt = os.environ.get("prompt", "")
current_prompt_modifier = os.environ.get("CONDA_PROMPT_MODIFIER")
if current_prompt_modifier:
prompt = re.sub(re.escape(current_prompt_modifier), r"", prompt)
set_vars.update(
{
"prompt": conda_prompt_modifier + prompt,
}
)
|
https://github.com/conda/conda/issues/6739
|
Traceback (most recent call last):
File "/anaconda/lib/python2.7/site-packages/conda/gateways/logging.py", line 64, in emit
msg = self.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 734, in format
return fmt.format(record)
File "/anaconda/lib/python2.7/logging/__init__.py", line 465, in format
record.message = record.getMessage()
File "/anaconda/lib/python2.7/logging/__init__.py", line 329, in getMessage
msg = msg % self.args
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 43, in __repr__
return '%s: %s' % (self.__class__.__name__, text_type(self))
File "/anaconda/lib/python2.7/site-packages/conda/__init__.py", line 47, in __str__
return text_type(self.message % self._kwargs)
ValueError: unsupported format character '{' (0x7b) at index 513
Logged from file exceptions.py, line 724
|
ValueError
|
def __get__(self, instance, instance_type):
try:
return super(ChannelField, self).__get__(instance, instance_type)
except AttributeError:
url = instance.url
return self.unbox(instance, instance_type, Channel(url))
|
def __get__(self, instance, instance_type):
try:
return super(ChannelField, self).__get__(instance, instance_type)
except AttributeError:
try:
url = instance.url
return self.unbox(instance, instance_type, Channel(url))
except AttributeError:
return Channel(None)
|
https://github.com/conda/conda/issues/6537
|
conda install /scratch/xxx/anaconda/pkgs/conda-build-3.2.0-py27_0.tar.bz2
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.3.25
conda is private : False
conda-env version : 4.3.25
conda-build version : 3.1.3
python version : 2.7.13.final.0
requests version : 2.14.2
root environment : /scratch/xxx/anaconda (writable)
default environment : /scratch/xxx/anaconda
envs directories : /scratch/xxx/conda-envs
/scratch/xxx/anaconda/envs
/home/xxx/.conda/envs
package cache : /scratch/xxx/anaconda/pkgs
/home/xxx/.conda/pkgs
channel URLs : file:///scratch/xxx/conda-bld/linux-64
file:///scratch/xxx/conda-bld/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
config file : /home/xxx/.condarc
netrc file : None
offline mode : False
user-agent : conda/4.3.25 requests/2.14.2 CPython/2.7.13 Linux/2.6.18-422.el5 Red Hat Enterprise Linux Server/5.11 glibc/2.5
UID:GID : 7679:107679
`$ /scratch/xxx/anaconda/bin/conda install /scratch/xxx/anaconda/pkgs/conda-build-3.2.0-py27_0.tar.bz2`
Traceback (most recent call last):
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 640, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 140, in _main
exit_code = args.func(args, p)
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 210, in install
explicit(args_packages, prefix, verbose=not context.quiet)
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/misc.py", line 110, in explicit
execute_actions(actions, index, verbose=verbose)
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/plan.py", line 830, in execute_actions
execute_instructions(plan, index, verbose)
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/instructions.py", line 247, in execute_instructions
cmd(state, arg)
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/instructions.py", line 107, in UNLINKLINKTRANSACTION_CMD
txn = UnlinkLinkTransaction.create_from_dists(index, prefix, unlink_dists, link_dists)
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/core/link.py", line 125, in create_from_dists
for dist, pkg_dir in zip(link_dists, pkg_dirs_to_link))
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/core/link.py", line 125, in <genexpr>
for dist, pkg_dir in zip(link_dists, pkg_dirs_to_link))
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/gateways/disk/read.py", line 95, in read_package_info
paths_data=paths_data,
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 702, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 719, in __init__
setattr(self, key, kwargs[key])
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 831, in __setattr__
super(ImmutableEntity, self).__setattr__(attribute, value)
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 424, in __set__
instance.__dict__[self.name] = self.validate(instance, self.box(instance, val))
File "/scratch/xxx/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 465, in validate
raise ValidationError(getattr(self, 'name', 'undefined name'), val)
ValidationError: Value for url cannot be None.
|
ValidationError
|
def extract_tarball(
tarball_full_path, destination_directory=None, progress_update_callback=None
):
if destination_directory is None:
destination_directory = tarball_full_path[:-8]
log.debug("extracting %s\n to %s", tarball_full_path, destination_directory)
assert not lexists(destination_directory), destination_directory
with tarfile.open(tarball_full_path) as t:
members = t.getmembers()
num_members = len(members)
def members_with_progress():
for q, member in enumerate(members):
if progress_update_callback:
progress_update_callback(q / num_members)
yield member
try:
t.extractall(path=destination_directory, members=members_with_progress())
except EnvironmentError as e:
if e.errno == ELOOP:
raise CaseInsensitiveFileSystemError(
package_location=tarball_full_path,
extract_location=destination_directory,
caused_by=e,
)
else:
raise
if sys.platform.startswith("linux") and os.getuid() == 0:
# When extracting as root, tarfile will by restore ownership
# of extracted files. However, we want root to be the owner
# (our implementation of --no-same-owner).
for root, dirs, files in os.walk(destination_directory):
for fn in files:
p = join(root, fn)
os.lchown(p, 0, 0)
|
def extract_tarball(
tarball_full_path, destination_directory=None, progress_update_callback=None
):
if destination_directory is None:
destination_directory = tarball_full_path[:-8]
log.debug("extracting %s\n to %s", tarball_full_path, destination_directory)
assert not lexists(destination_directory), destination_directory
with tarfile.open(tarball_full_path) as t:
members = t.getmembers()
num_members = len(members)
def members_with_progress():
for q, member in enumerate(members):
if progress_update_callback:
progress_update_callback(q / num_members)
yield member
t.extractall(path=destination_directory, members=members_with_progress())
if sys.platform.startswith("linux") and os.getuid() == 0:
# When extracting as root, tarfile will by restore ownership
# of extracted files. However, we want root to be the owner
# (our implementation of --no-same-owner).
for root, dirs, files in os.walk(destination_directory):
for fn in files:
p = join(root, fn)
os.lchown(p, 0, 0)
|
https://github.com/conda/conda/issues/6514
|
Traceback (most recent call last):
File "/Users/msarahan/miniconda3/bin/c3i", line 11, in <module>
load_entry_point('conda-concourse-ci', 'console_scripts', 'c3i')()
File "/Users/msarahan/code/conda-concourse-ci/conda_concourse_ci/cli.py", line 123, in main
execute.submit_one_off(**args.__dict__)
File "/Users/msarahan/code/conda-concourse-ci/conda_concourse_ci/execute.py", line 647, in submit_one_off
**kwargs)
File "/Users/msarahan/code/conda-concourse-ci/conda_concourse_ci/execute.py", line 508, in compute_builds
variant_config_files=kw.get('variant_config_files', []))
File "/Users/msarahan/code/conda-concourse-ci/conda_concourse_ci/execute.py", line 72, in collect_tasks
config=config)
File "/Users/msarahan/code/conda-concourse-ci/conda_concourse_ci/compute_build_graph.py", line 379, in construct_graph
recipes_dir, config=config)
File "/Users/msarahan/code/conda-concourse-ci/conda_concourse_ci/compute_build_graph.py", line 206, in add_recipe_to_graph
rendered = _get_or_render_metadata(recipe_dir, worker, config=config)
File "/Users/msarahan/miniconda3/lib/python3.6/site-packages/conda/utils.py", line 38, in __call__
return self.func(*args, **kw)
File "/Users/msarahan/code/conda-concourse-ci/conda_concourse_ci/compute_build_graph.py", line 199, in _get_or_render_metadata
bypass_env_check=True, config=config)
File "/Users/msarahan/code/conda-build/conda_build/api.py", line 49, in render
permit_undefined_jinja=not finalize):
File "/Users/msarahan/code/conda-build/conda_build/metadata.py", line 1781, in get_output_metadata_set
permit_unsatisfiable_variants=permit_unsatisfiable_variants)
File "/Users/msarahan/code/conda-build/conda_build/metadata.py", line 645, in finalize_outputs_pass
fm = finalize_metadata(om, permit_unsatisfiable_variants=permit_unsatisfiable_variants)
File "/Users/msarahan/code/conda-build/conda_build/render.py", line 387, in finalize_metadata
exclude_pattern)
File "/Users/msarahan/code/conda-build/conda_build/render.py", line 306, in add_upstream_pins
permit_unsatisfiable_variants, exclude_pattern)
File "/Users/msarahan/code/conda-build/conda_build/render.py", line 289, in _read_upstream_pin_files
extra_run_specs = get_upstream_pins(m, actions, env)
File "/Users/msarahan/code/conda-build/conda_build/render.py", line 251, in get_upstream_pins
pfe.execute()
File "/Users/msarahan/miniconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 494, in execute
self._execute_action(action)
File "/Users/msarahan/miniconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 515, in _execute_action
raise CondaMultiError(exceptions)
conda.CondaMultiError: OSError(62, 'Too many levels of symbolic links')
OSError(62, 'Too many levels of symbolic links')
OSError(62, 'Too many levels of symbolic links')
|
conda.CondaMultiError
|
def execute_config(args, parser):
json_warnings = []
json_get = {}
if args.show_sources:
if context.json:
print(
json.dumps(
context.collect_all(),
sort_keys=True,
indent=2,
separators=(",", ": "),
)
)
else:
lines = []
for source, reprs in iteritems(context.collect_all()):
lines.append("==> %s <==" % source)
lines.extend(format_dict(reprs))
lines.append("")
print("\n".join(lines))
return
if args.show is not None:
if args.show:
paramater_names = args.show
all_names = context.list_parameters()
not_params = set(paramater_names) - set(all_names)
if not_params:
from ..exceptions import ArgumentError
from ..resolve import dashlist
raise ArgumentError(
"Invalid configuration parameters: %s" % dashlist(not_params)
)
else:
paramater_names = context.list_parameters()
from collections import OrderedDict
d = OrderedDict((key, getattr(context, key)) for key in paramater_names)
if context.json:
print(
json.dumps(
d,
sort_keys=True,
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
)
else:
# coerce channels
if "custom_channels" in d:
d["custom_channels"] = {
channel.name: "%s://%s" % (channel.scheme, channel.location)
for channel in itervalues(d["custom_channels"])
}
# TODO: custom_multichannels needs better formatting
if "custom_multichannels" in d:
d["custom_multichannels"] = {
k: json.dumps([text_type(c) for c in chnls])
for k, chnls in iteritems(d["custom_multichannels"])
}
print("\n".join(format_dict(d)))
context.validate_configuration()
return
if args.describe is not None:
if args.describe:
paramater_names = args.describe
all_names = context.list_parameters()
not_params = set(paramater_names) - set(all_names)
if not_params:
from ..exceptions import ArgumentError
from ..resolve import dashlist
raise ArgumentError(
"Invalid configuration parameters: %s" % dashlist(not_params)
)
else:
paramater_names = context.list_parameters()
if context.json:
print(
json.dumps(
[context.describe_parameter(name) for name in paramater_names],
sort_keys=True,
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
)
else:
print(
"\n".join(
concat(
parameter_description_builder(name) for name in paramater_names
)
)
)
return
if args.validate:
context.validate_all()
return
if args.system:
rc_path = sys_rc_path
elif args.env:
if "CONDA_PREFIX" in os.environ:
rc_path = join(os.environ["CONDA_PREFIX"], ".condarc")
else:
rc_path = user_rc_path
elif args.file:
rc_path = args.file
else:
rc_path = user_rc_path
if args.write_default:
if isfile(rc_path):
with open(rc_path) as fh:
data = fh.read().strip()
if data:
raise CondaError(
"The file '%s' "
"already contains configuration information.\n"
"Remove the file to proceed.\n"
"Use `conda config --describe` to display default configuration."
% rc_path
)
with open(rc_path, "w") as fh:
paramater_names = context.list_parameters()
fh.write(
"\n".join(
concat(
parameter_description_builder(name) for name in paramater_names
)
)
)
return
# read existing condarc
if os.path.exists(rc_path):
with open(rc_path, "r") as fh:
rc_config = yaml_load(fh) or {}
else:
rc_config = {}
grouped_paramaters = groupby(
lambda p: context.describe_parameter(p)["parameter_type"],
context.list_parameters(),
)
primitive_parameters = grouped_paramaters["primitive"]
sequence_parameters = grouped_paramaters["sequence"]
map_parameters = grouped_paramaters["map"]
# Get
if args.get is not None:
context.validate_all()
if args.get == []:
args.get = sorted(rc_config.keys())
for key in args.get:
if key not in primitive_parameters + sequence_parameters:
message = "unknown key %s" % key
if not context.json:
print(message, file=sys.stderr)
else:
json_warnings.append(message)
continue
if key not in rc_config:
continue
if context.json:
json_get[key] = rc_config[key]
continue
if isinstance(rc_config[key], (bool, string_types)):
print("--set", key, rc_config[key])
else: # assume the key is a list-type
# Note, since conda config --add prepends, these are printed in
# the reverse order so that entering them in this order will
# recreate the same file
items = rc_config.get(key, [])
numitems = len(items)
for q, item in enumerate(reversed(items)):
# Use repr so that it can be pasted back in to conda config --add
if key == "channels" and q in (0, numitems - 1):
print(
"--add",
key,
repr(item),
" # lowest priority" if q == 0 else " # highest priority",
)
else:
print("--add", key, repr(item))
if args.stdin:
content = timeout(5, sys.stdin.read)
if not content:
return
try:
parsed = yaml_load(content)
rc_config.update(parsed)
except Exception: # pragma: no cover
from ..exceptions import ParseError
raise ParseError("invalid yaml content:\n%s" % content)
# prepend, append, add
for arg, prepend in zip((args.prepend, args.append), (True, False)):
for key, item in arg:
if key == "channels" and key not in rc_config:
rc_config[key] = ["defaults"]
if key not in sequence_parameters:
from ..exceptions import CondaValueError
raise CondaValueError(
"Key '%s' is not a known sequence parameter." % key
)
if not isinstance(rc_config.get(key, []), list):
from ..exceptions import CouldntParseError
bad = rc_config[key].__class__.__name__
raise CouldntParseError("key %r should be a list, not %s." % (key, bad))
arglist = rc_config.setdefault(key, [])
if item in arglist:
# Right now, all list keys should not contain duplicates
message = "Warning: '%s' already in '%s' list, moving to the %s" % (
item,
key,
"top" if prepend else "bottom",
)
arglist = rc_config[key] = [p for p in arglist if p != item]
if not context.json:
print(message, file=sys.stderr)
else:
json_warnings.append(message)
arglist.insert(0 if prepend else len(arglist), item)
# Set
for key, item in args.set:
key, subkey = key.split(".", 1) if "." in key else (key, None)
if key in primitive_parameters:
value = context.typify_parameter(key, item)
rc_config[key] = value
elif key in map_parameters:
argmap = rc_config.setdefault(key, {})
argmap[subkey] = item
else:
from ..exceptions import CondaValueError
raise CondaValueError("Key '%s' is not a known primitive parameter." % key)
# Remove
for key, item in args.remove:
key, subkey = key.split(".", 1) if "." in key else (key, None)
if key not in rc_config:
if key != "channels":
from ..exceptions import CondaKeyError
raise CondaKeyError(key, "key %r is not in the config file" % key)
rc_config[key] = ["defaults"]
if item not in rc_config[key]:
from ..exceptions import CondaKeyError
raise CondaKeyError(
key, "%r is not in the %r key of the config file" % (item, key)
)
rc_config[key] = [i for i in rc_config[key] if i != item]
# Remove Key
for (key,) in args.remove_key:
key, subkey = key.split(".", 1) if "." in key else (key, None)
if key not in rc_config:
from ..exceptions import CondaKeyError
raise CondaKeyError(key, "key %r is not in the config file" % key)
del rc_config[key]
# config.rc_keys
if not args.get:
# Add representers for enums.
# Because a representer cannot be added for the base Enum class (it must be added for
# each specific Enum subclass), and because of import rules), I don't know of a better
# location to do this.
def enum_representer(dumper, data):
return dumper.represent_str(str(data))
yaml.representer.RoundTripRepresenter.add_representer(
SafetyChecks, enum_representer
)
yaml.representer.RoundTripRepresenter.add_representer(
PathConflict, enum_representer
)
try:
with open(rc_path, "w") as rc:
rc.write(yaml_dump(rc_config))
except (IOError, OSError) as e:
raise CondaError(
"Cannot write to condarc file at %s\nCaused by %r" % (rc_path, e)
)
if context.json:
from .common import stdout_json_success
stdout_json_success(rc_path=rc_path, warnings=json_warnings, get=json_get)
return
|
def execute_config(args, parser):
json_warnings = []
json_get = {}
if args.show_sources:
if context.json:
print(
json.dumps(
context.collect_all(),
sort_keys=True,
indent=2,
separators=(",", ": "),
)
)
else:
lines = []
for source, reprs in iteritems(context.collect_all()):
lines.append("==> %s <==" % source)
lines.extend(format_dict(reprs))
lines.append("")
print("\n".join(lines))
return
if args.show is not None:
if args.show:
paramater_names = args.show
all_names = context.list_parameters()
not_params = set(paramater_names) - set(all_names)
if not_params:
from ..exceptions import ArgumentError
from ..resolve import dashlist
raise ArgumentError(
"Invalid configuration parameters: %s" % dashlist(not_params)
)
else:
paramater_names = context.list_parameters()
from collections import OrderedDict
d = OrderedDict((key, getattr(context, key)) for key in paramater_names)
if context.json:
print(
json.dumps(
d,
sort_keys=True,
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
)
else:
# coerce channels
if "custom_channels" in d:
d["custom_channels"] = {
channel.name: "%s://%s" % (channel.scheme, channel.location)
for channel in itervalues(d["custom_channels"])
}
# TODO: custom_multichannels needs better formatting
if "custom_multichannels" in d:
d["custom_multichannels"] = {
k: json.dumps([text_type(c) for c in chnls])
for k, chnls in iteritems(d["custom_multichannels"])
}
print("\n".join(format_dict(d)))
context.validate_configuration()
return
if args.describe is not None:
if args.describe:
paramater_names = args.describe
all_names = context.list_parameters()
not_params = set(paramater_names) - set(all_names)
if not_params:
from ..exceptions import ArgumentError
from ..resolve import dashlist
raise ArgumentError(
"Invalid configuration parameters: %s" % dashlist(not_params)
)
else:
paramater_names = context.list_parameters()
if context.json:
print(
json.dumps(
[context.describe_parameter(name) for name in paramater_names],
sort_keys=True,
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
)
else:
print(
"\n".join(
concat(
parameter_description_builder(name) for name in paramater_names
)
)
)
return
if args.validate:
context.validate_all()
return
if args.system:
rc_path = sys_rc_path
elif args.env:
if "CONDA_PREFIX" in os.environ:
rc_path = join(os.environ["CONDA_PREFIX"], ".condarc")
else:
rc_path = user_rc_path
elif args.file:
rc_path = args.file
else:
rc_path = user_rc_path
if args.write_default:
if isfile(rc_path):
with open(rc_path) as fh:
data = fh.read().strip()
if data:
raise CondaError(
"The file '%s' "
"already contains configuration information.\n"
"Remove the file to proceed.\n"
"Use `conda config --describe` to display default configuration."
% rc_path
)
with open(rc_path, "w") as fh:
paramater_names = context.list_parameters()
fh.write(
"\n".join(
concat(
parameter_description_builder(name) for name in paramater_names
)
)
)
return
# read existing condarc
if os.path.exists(rc_path):
with open(rc_path, "r") as fh:
rc_config = yaml_load(fh) or {}
else:
rc_config = {}
grouped_paramaters = groupby(
lambda p: context.describe_parameter(p)["parameter_type"],
context.list_parameters(),
)
primitive_parameters = grouped_paramaters["primitive"]
sequence_parameters = grouped_paramaters["sequence"]
map_parameters = grouped_paramaters["map"]
# Get
if args.get is not None:
context.validate_all()
if args.get == []:
args.get = sorted(rc_config.keys())
for key in args.get:
if key not in primitive_parameters + sequence_parameters:
message = "unknown key %s" % key
if not context.json:
print(message, file=sys.stderr)
else:
json_warnings.append(message)
continue
if key not in rc_config:
continue
if context.json:
json_get[key] = rc_config[key]
continue
if isinstance(rc_config[key], (bool, string_types)):
print("--set", key, rc_config[key])
else: # assume the key is a list-type
# Note, since conda config --add prepends, these are printed in
# the reverse order so that entering them in this order will
# recreate the same file
items = rc_config.get(key, [])
numitems = len(items)
for q, item in enumerate(reversed(items)):
# Use repr so that it can be pasted back in to conda config --add
if key == "channels" and q in (0, numitems - 1):
print(
"--add",
key,
repr(item),
" # lowest priority" if q == 0 else " # highest priority",
)
else:
print("--add", key, repr(item))
if args.stdin:
content = timeout(5, sys.stdin.read)
if not content:
return
try:
parsed = yaml_load(content)
rc_config.update(parsed)
except Exception: # pragma: no cover
from ..exceptions import ParseError
raise ParseError("invalid yaml content:\n%s" % content)
# prepend, append, add
for arg, prepend in zip((args.prepend, args.append), (True, False)):
for key, item in arg:
if key == "channels" and key not in rc_config:
rc_config[key] = ["defaults"]
if key not in sequence_parameters:
from ..exceptions import CondaValueError
raise CondaValueError(
"Key '%s' is not a known sequence parameter." % key
)
if not isinstance(rc_config.get(key, []), list):
from ..exceptions import CouldntParseError
bad = rc_config[key].__class__.__name__
raise CouldntParseError("key %r should be a list, not %s." % (key, bad))
arglist = rc_config.setdefault(key, [])
if item in arglist:
# Right now, all list keys should not contain duplicates
message = "Warning: '%s' already in '%s' list, moving to the %s" % (
item,
key,
"top" if prepend else "bottom",
)
arglist = rc_config[key] = [p for p in arglist if p != item]
if not context.json:
print(message, file=sys.stderr)
else:
json_warnings.append(message)
arglist.insert(0 if prepend else len(arglist), item)
# Set
for key, item in args.set:
key, subkey = key.split(".", 1) if "." in key else (key, None)
if key in primitive_parameters:
value = context.typify_parameter(key, item)
rc_config[key] = value
elif key in map_parameters:
argmap = rc_config.setdefault(key, {})
argmap[subkey] = item
else:
from ..exceptions import CondaValueError
raise CondaValueError("Key '%s' is not a known primitive parameter." % key)
# Remove
for key, item in args.remove:
key, subkey = key.split(".", 1) if "." in key else (key, None)
if key not in rc_config:
if key != "channels":
from ..exceptions import CondaKeyError
raise CondaKeyError(key, "key %r is not in the config file" % key)
rc_config[key] = ["defaults"]
if item not in rc_config[key]:
from ..exceptions import CondaKeyError
raise CondaKeyError(
key, "%r is not in the %r key of the config file" % (item, key)
)
rc_config[key] = [i for i in rc_config[key] if i != item]
# Remove Key
for (key,) in args.remove_key:
key, subkey = key.split(".", 1) if "." in key else (key, None)
if key not in rc_config:
from ..exceptions import CondaKeyError
raise CondaKeyError(key, "key %r is not in the config file" % key)
del rc_config[key]
# config.rc_keys
if not args.get:
try:
with open(rc_path, "w") as rc:
rc.write(yaml_dump(rc_config))
except (IOError, OSError) as e:
raise CondaError(
"Cannot write to condarc file at %s\nCaused by %r" % (rc_path, e)
)
if context.json:
from .common import stdout_json_success
stdout_json_success(rc_path=rc_path, warnings=json_warnings, get=json_get)
return
|
https://github.com/conda/conda/issues/6618
|
error: RepresenterError('cannot represent an object: prevent',)
command: C:\tools\Anaconda3\Scripts\conda config --set path_conflict prevent
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Windows/10 Windows/10.0.16299
_messageid: -9223372036843225525
_messagetime: 1514570427640 / 2017-12-29 12:00:27
Traceback (most recent call last):
File "C:\tools\Anaconda3\lib\site-packages\conda\exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "C:\tools\Anaconda3\lib\site-packages\conda\cli\main.py", line 78, in _main
exit_code = do_call(args, p)
File "C:\tools\Anaconda3\lib\site-packages\conda\cli\conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "C:\tools\Anaconda3\lib\site-packages\conda\cli\main_config.py", line 29, in execute
execute_config(args, parser)
File "C:\tools\Anaconda3\lib\site-packages\conda\cli\main_config.py", line 312, in execute_config
rc.write(yaml_dump(rc_config))
File "C:\tools\Anaconda3\lib\site-packages\conda\common\serialize.py", line 81, in yaml_dump
indent=2)
File "C:\tools\Anaconda3\lib\site-packages\ruamel_yaml\main.py", line 254, in dump
version=version, tags=tags, block_seq_indent=block_seq_indent)
File "C:\tools\Anaconda3\lib\site-packages\ruamel_yaml\main.py", line 224, in dump_all
dumper.represent(data)
File "C:\tools\Anaconda3\lib\site-packages\ruamel_yaml\representer.py", line 49, in represent
node = self.represent_data(data)
File "C:\tools\Anaconda3\lib\site-packages\ruamel_yaml\representer.py", line 83, in represent_data
node = self.yaml_representers[data_types[0]](self, data)
File "C:\tools\Anaconda3\lib\site-packages\ruamel_yaml\representer.py", line 852, in represent_dict
return self.represent_mapping(tag, data)
File "C:\tools\Anaconda3\lib\site-packages\ruamel_yaml\representer.py", line 698, in represent_mapping
node_value = self.represent_data(item_value)
File "C:\tools\Anaconda3\lib\site-packages\ruamel_yaml\representer.py", line 93, in represent_data
node = self.yaml_representers[None](self, data)
File "C:\tools\Anaconda3\lib\site-packages\ruamel_yaml\representer.py", line 324, in represent_undefined
raise RepresenterError("cannot represent an object: %s" % data)
ruamel_yaml.representer.RepresenterError: cannot represent an object: prevent
|
ruamel_yaml.representer.RepresenterError
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/repodata_record.json doesn't exists
# JsonDecodeError if info/repodata_record.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because %r",
join(extracted_package_dir, "info", "repodata_record.json"),
e,
)
# try reading info/index.json
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/index.json doesn't exist
# JsonDecodeError if info/index.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because",
join(extracted_package_dir, "info", "index.json"),
e,
)
if isdir(extracted_package_dir) and not isfile(package_tarball_full_path):
# We have a directory that looks like a conda package, but without
# (1) info/repodata_record.json or info/index.json, and (2) a conda package
# tarball, there's not much we can do. We'll just ignore it.
return None
try:
if self.is_writable:
if isdir(extracted_package_dir):
# We have a partially unpacked conda package directory. Best thing
# to do is remove it and try extracting.
rm_rf(extracted_package_dir)
try:
extract_tarball(
package_tarball_full_path, extracted_package_dir
)
except EnvironmentError as e:
if e.errno == ENOENT:
# FileNotFoundError(2, 'No such file or directory')
# At this point, we can assume the package tarball is bad.
# Remove everything and move on.
# see https://github.com/conda/conda/issues/6707
rm_rf(package_tarball_full_path)
rm_rf(extracted_package_dir)
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError):
# At this point, we can assume the package tarball is bad.
# Remove everything and move on.
rm_rf(package_tarball_full_path)
rm_rf(extracted_package_dir)
return None
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError) as e:
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
# We have a corrupted tarball. Remove the tarball so it doesn't affect
# anything, and move on.
log.debug(
"unable to extract info/index.json from %s\n because %r",
package_tarball_full_path,
e,
)
rm_rf(package_tarball_full_path)
return None
# we were able to read info/index.json, so let's continue
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
# write the info/repodata_record.json file so we can short-circuit this next time
if self.is_writable:
repodata_record = PackageRecord.from_objects(package_cache_record)
repodata_record_path = join(
extracted_package_dir, "info", "repodata_record.json"
)
try:
write_as_json_to_file(repodata_record_path, repodata_record)
except (IOError, OSError) as e:
if e.errno in (EACCES, EPERM) and isdir(dirname(repodata_record_path)):
raise NotWritableError(repodata_record_path, e.errno, caused_by=e)
else:
raise
return package_cache_record
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/repodata_record.json doesn't exists
# JsonDecodeError if info/repodata_record.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because %r",
join(extracted_package_dir, "info", "repodata_record.json"),
e,
)
# try reading info/index.json
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/index.json doesn't exist
# JsonDecodeError if info/index.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because",
join(extracted_package_dir, "info", "index.json"),
e,
)
if isdir(extracted_package_dir) and not isfile(package_tarball_full_path):
# We have a directory that looks like a conda package, but without
# (1) info/repodata_record.json or info/index.json, and (2) a conda package
# tarball, there's not much we can do. We'll just ignore it.
return None
try:
if self.is_writable:
if isdir(extracted_package_dir):
# We have a partially unpacked conda package directory. Best thing
# to do is remove it and try extracting.
rm_rf(extracted_package_dir)
extract_tarball(package_tarball_full_path, extracted_package_dir)
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError):
# At this point, we can assume the package tarball is bad.
# Remove everything and move on.
rm_rf(package_tarball_full_path)
rm_rf(extracted_package_dir)
return None
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError) as e:
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
# We have a corrupted tarball. Remove the tarball so it doesn't affect
# anything, and move on.
log.debug(
"unable to extract info/index.json from %s\n because %r",
package_tarball_full_path,
e,
)
rm_rf(package_tarball_full_path)
return None
# we were able to read info/index.json, so let's continue
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
# write the info/repodata_record.json file so we can short-circuit this next time
if self.is_writable:
repodata_record = PackageRecord.from_objects(package_cache_record)
repodata_record_path = join(
extracted_package_dir, "info", "repodata_record.json"
)
try:
write_as_json_to_file(repodata_record_path, repodata_record)
except (IOError, OSError) as e:
if e.errno in (EACCES, EPERM) and isdir(dirname(repodata_record_path)):
raise NotWritableError(repodata_record_path, e.errno, caused_by=e)
else:
raise
return package_cache_record
|
https://github.com/conda/conda/issues/6707
|
error: FileNotFoundError(2, 'No such file or directory')
command: C:\Users\Anurag\Anaconda3\Scripts\conda install spyder
user_agent: conda/4.4.7 requests/2.13.0 CPython/3.6.2 Windows/10 Windows/10.0.16299
_messageid: -9223372036837325447
_messagetime: 1515540414747 / 2018-01-09 17:26:54
Traceback (most recent call last):
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 270, in _make_single_record
repodata_record = read_repodata_json(extracted_package_dir)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\gateways\disk\read.py", line 123, in read_repodata_json
with open(join(extracted_package_directory, 'info', 'repodata_record.json')) as fi:
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\common\compat.py", line 120, in open
closefd=closefd)
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\Anurag\\Anaconda3\\pkgs\\pip-9.0.1-py36_1\\info\\repodata_record.json'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 287, in _make_single_record
index_json_record = read_index_json(extracted_package_dir)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\gateways\disk\read.py", line 111, in read_index_json
with open(join(extracted_package_directory, 'info', 'index.json')) as fi:
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\common\compat.py", line 120, in open
closefd=closefd)
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\Anurag\\Anaconda3\\pkgs\\pip-9.0.1-py36_1\\info\\index.json'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\exceptions.py", line 743, in __call__
return func(*args, **kwargs)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\cli\main.py", line 78, in _main
exit_code = do_call(args, p)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\cli\conda_argparse.py", line 76, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\cli\main_install.py", line 11, in execute
install(args, parser, 'install')
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\cli\install.py", line 255, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\cli\install.py", line 272, in handle_txn
unlink_link_transaction.display_actions(progressive_fetch_extract)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\link.py", line 706, in display_actions
legacy_action_groups = self.make_legacy_action_groups(pfe)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\link.py", line 689, in make_legacy_action_groups
pfe.prepare()
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\common\io.py", line 415, in decorated
return f(*args, **kwds)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 540, in prepare
for prec in self.link_precs)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 540, in <genexpr>
for prec in self.link_precs)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 434, in make_actions_for_record
), None)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 431, in <genexpr>
pcrec for pcrec in concat(PackageCache(pkgs_dir).query(pref_or_spec)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 432, in <genexpr>
for pkgs_dir in context.pkgs_dirs)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 118, in query
return (pcrec for pcrec in itervalues(self._package_cache_records) if pcrec == param)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 211, in _package_cache_records
self.load()
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 90, in load
package_cache_record = self._make_single_record(base_name)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\core\package_cache.py", line 308, in _make_single_record
extract_tarball(package_tarball_full_path, extracted_package_dir)
File "C:\Users\Anurag\Anaconda3\lib\site-packages\conda\gateways\disk\create.py", line 145, in extract_tarball
t.extractall(path=destination_directory, members=members_with_progress())
File "C:\Users\Anurag\Anaconda3\lib\tarfile.py", line 2007, in extractall
numeric_owner=numeric_owner)
File "C:\Users\Anurag\Anaconda3\lib\tarfile.py", line 2049, in extract
numeric_owner=numeric_owner)
File "C:\Users\Anurag\Anaconda3\lib\tarfile.py", line 2119, in _extract_member
self.makefile(tarinfo, targetpath)
File "C:\Users\Anurag\Anaconda3\lib\tarfile.py", line 2160, in makefile
with bltn_open(targetpath, "wb") as target:
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\Anurag\\Anaconda3\\pkgs\\pip-9.0.1-py36_1\\Lib\\site-packages\\pip\\_vendor\\cachecontrol\\__pycache__\\filewrapper.cpython-36.pyc'
|
FileNotFoundError
|
def __enter__(self):
enabled = os.environ.get("CONDA_INSTRUMENTATION_ENABLED")
if enabled and boolify(enabled):
self.start_time = time()
return self
|
def __enter__(self):
enabled = os.environ.get("CONDA_INSTRUMENTATION_ENABLED")
if enabled and boolify(enabled):
self.start_time = time()
|
https://github.com/conda/conda/issues/6624
|
error: RuntimeError("generator didn't stop after throw()",)
command: /home/mholekev/miniconda3/bin/conda install --yes numpy scipy matplotlib jupyter git pandas
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/2.6.32-696.10.3.el6.x86_64 centos/6.7 glibc/2.12
_messageid: -9223372036842075552
_messagetime: 1514766990662 / 2017-12-31 18:36:30
Traceback (most recent call last):
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/common/io.py", line 399, in backdown_thread_pool
yield ThreadPoolExecutor(max_workers)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 214, in get_reduced_index
new_records = query_all(spec)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 187, in query_all
return tuple(concat(future.result() for future in as_completed(futures)))
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 187, in <genexpr>
return tuple(concat(future.result() for future in as_completed(futures)))
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/_base.py", line 217, in as_completed
fs = set(fs)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 186, in <genexpr>
futures = (executor.submit(sd.query, spec) for sd in subdir_datas)
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/thread.py", line 123, in submit
self._adjust_thread_count()
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/thread.py", line 142, in _adjust_thread_count
t.start()
File "/home/mholekev/miniconda3/lib/python3.6/threading.py", line 846, in start
_start_new_thread(self._bootstrap, ())
RuntimeError: can't start new thread
|
RuntimeError
|
def get_reduced_index(prefix, channels, subdirs, specs):
# # this block of code is a "combine" step intended to filter out redundant specs
# # causes a problem with py.test tests/core/test_solve.py -k broken_install
# specs_map = defaultdict(list)
# for spec in specs:
# specs_map[spec.name].append(spec)
# consolidated_specs = set()
# for spec_name, specs_group in iteritems(specs_map):
# if len(specs_group) == 1:
# consolidated_specs.add(specs_group[0])
# elif spec_name == '*':
# consolidated_specs.update(specs_group)
# else:
# keep_specs = []
# for spec in specs_group:
# if len(spec._match_components) > 1 or spec.target or spec.optional:
# keep_specs.append(spec)
# consolidated_specs.update(keep_specs)
with ThreadLimitedThreadPoolExecutor() as executor:
channel_urls = all_channel_urls(channels, subdirs=subdirs)
check_whitelist(channel_urls)
if context.offline:
grouped_urls = groupby(lambda url: url.startswith("file://"), channel_urls)
ignored_urls = grouped_urls.get(False, ())
if ignored_urls:
log.info(
"Ignoring the following channel urls because mode is offline.%s",
dashlist(ignored_urls),
)
channel_urls = IndexedSet(grouped_urls.get(True, ()))
subdir_datas = tuple(SubdirData(Channel(url)) for url in channel_urls)
records = IndexedSet()
collected_names = set()
collected_track_features = set()
pending_names = set()
pending_track_features = set()
def query_all(spec):
futures = (executor.submit(sd.query, spec) for sd in subdir_datas)
return tuple(concat(future.result() for future in as_completed(futures)))
def push_spec(spec):
name = spec.get_raw_value("name")
if name and name not in collected_names:
pending_names.add(name)
track_features = spec.get_raw_value("track_features")
if track_features:
for ftr_name in track_features:
if ftr_name not in collected_track_features:
pending_track_features.add(ftr_name)
def push_record(record):
for _spec in record.combined_depends:
push_spec(_spec)
if record.track_features:
for ftr_name in record.track_features:
push_spec(MatchSpec(track_features=ftr_name))
for spec in specs:
push_spec(spec)
while pending_names or pending_track_features:
while pending_names:
name = pending_names.pop()
collected_names.add(name)
spec = MatchSpec(name)
new_records = query_all(spec)
for record in new_records:
push_record(record)
records.update(new_records)
while pending_track_features:
feature_name = pending_track_features.pop()
collected_track_features.add(feature_name)
spec = MatchSpec(track_features=feature_name)
new_records = query_all(spec)
for record in new_records:
push_record(record)
records.update(new_records)
reduced_index = {Dist(rec): rec for rec in records}
if prefix is not None:
_supplement_index_with_prefix(reduced_index, prefix)
if context.offline or (
"unknown" in context._argparse_args and context._argparse_args.unknown
):
# This is really messed up right now. Dates all the way back to
# https://github.com/conda/conda/commit/f761f65a82b739562a0d997a2570e2b8a0bdc783
# TODO: revisit this later
_supplement_index_with_cache(reduced_index)
# add feature records for the solver
known_features = set()
for rec in itervalues(reduced_index):
known_features.update(concatv(rec.track_features, rec.features))
known_features.update(context.track_features)
for ftr_str in known_features:
rec = make_feature_record(ftr_str)
reduced_index[Dist(rec)] = rec
return reduced_index
|
def get_reduced_index(prefix, channels, subdirs, specs):
# # this block of code is a "combine" step intended to filter out redundant specs
# # causes a problem with py.test tests/core/test_solve.py -k broken_install
# specs_map = defaultdict(list)
# for spec in specs:
# specs_map[spec.name].append(spec)
# consolidated_specs = set()
# for spec_name, specs_group in iteritems(specs_map):
# if len(specs_group) == 1:
# consolidated_specs.add(specs_group[0])
# elif spec_name == '*':
# consolidated_specs.update(specs_group)
# else:
# keep_specs = []
# for spec in specs_group:
# if len(spec._match_components) > 1 or spec.target or spec.optional:
# keep_specs.append(spec)
# consolidated_specs.update(keep_specs)
with backdown_thread_pool() as executor:
channel_urls = all_channel_urls(channels, subdirs=subdirs)
check_whitelist(channel_urls)
if context.offline:
grouped_urls = groupby(lambda url: url.startswith("file://"), channel_urls)
ignored_urls = grouped_urls.get(False, ())
if ignored_urls:
log.info(
"Ignoring the following channel urls because mode is offline.%s",
dashlist(ignored_urls),
)
channel_urls = IndexedSet(grouped_urls.get(True, ()))
subdir_datas = tuple(SubdirData(Channel(url)) for url in channel_urls)
records = IndexedSet()
collected_names = set()
collected_track_features = set()
pending_names = set()
pending_track_features = set()
def query_all(spec):
futures = (executor.submit(sd.query, spec) for sd in subdir_datas)
return tuple(concat(future.result() for future in as_completed(futures)))
def push_spec(spec):
name = spec.get_raw_value("name")
if name and name not in collected_names:
pending_names.add(name)
track_features = spec.get_raw_value("track_features")
if track_features:
for ftr_name in track_features:
if ftr_name not in collected_track_features:
pending_track_features.add(ftr_name)
def push_record(record):
for _spec in record.combined_depends:
push_spec(_spec)
if record.track_features:
for ftr_name in record.track_features:
push_spec(MatchSpec(track_features=ftr_name))
for spec in specs:
push_spec(spec)
while pending_names or pending_track_features:
while pending_names:
name = pending_names.pop()
collected_names.add(name)
spec = MatchSpec(name)
new_records = query_all(spec)
for record in new_records:
push_record(record)
records.update(new_records)
while pending_track_features:
feature_name = pending_track_features.pop()
collected_track_features.add(feature_name)
spec = MatchSpec(track_features=feature_name)
new_records = query_all(spec)
for record in new_records:
push_record(record)
records.update(new_records)
reduced_index = {Dist(rec): rec for rec in records}
if prefix is not None:
_supplement_index_with_prefix(reduced_index, prefix)
if context.offline or (
"unknown" in context._argparse_args and context._argparse_args.unknown
):
# This is really messed up right now. Dates all the way back to
# https://github.com/conda/conda/commit/f761f65a82b739562a0d997a2570e2b8a0bdc783
# TODO: revisit this later
_supplement_index_with_cache(reduced_index)
# add feature records for the solver
known_features = set()
for rec in itervalues(reduced_index):
known_features.update(concatv(rec.track_features, rec.features))
known_features.update(context.track_features)
for ftr_str in known_features:
rec = make_feature_record(ftr_str)
reduced_index[Dist(rec)] = rec
return reduced_index
|
https://github.com/conda/conda/issues/6624
|
error: RuntimeError("generator didn't stop after throw()",)
command: /home/mholekev/miniconda3/bin/conda install --yes numpy scipy matplotlib jupyter git pandas
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/2.6.32-696.10.3.el6.x86_64 centos/6.7 glibc/2.12
_messageid: -9223372036842075552
_messagetime: 1514766990662 / 2017-12-31 18:36:30
Traceback (most recent call last):
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/common/io.py", line 399, in backdown_thread_pool
yield ThreadPoolExecutor(max_workers)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 214, in get_reduced_index
new_records = query_all(spec)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 187, in query_all
return tuple(concat(future.result() for future in as_completed(futures)))
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 187, in <genexpr>
return tuple(concat(future.result() for future in as_completed(futures)))
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/_base.py", line 217, in as_completed
fs = set(fs)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 186, in <genexpr>
futures = (executor.submit(sd.query, spec) for sd in subdir_datas)
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/thread.py", line 123, in submit
self._adjust_thread_count()
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/thread.py", line 142, in _adjust_thread_count
t.start()
File "/home/mholekev/miniconda3/lib/python3.6/threading.py", line 846, in start
_start_new_thread(self._bootstrap, ())
RuntimeError: can't start new thread
|
RuntimeError
|
def query_all(channels, subdirs, package_ref_or_match_spec):
from .index import check_whitelist # TODO: fix in-line import
channel_urls = all_channel_urls(channels, subdirs=subdirs)
check_whitelist(channel_urls)
with ThreadLimitedThreadPoolExecutor() as executor:
futures = (
executor.submit(SubdirData(Channel(url)).query, package_ref_or_match_spec)
for url in channel_urls
)
return tuple(concat(future.result() for future in as_completed(futures)))
|
def query_all(channels, subdirs, package_ref_or_match_spec):
channel_urls = all_channel_urls(channels, subdirs=subdirs)
executor = None
try:
from concurrent.futures import ThreadPoolExecutor, as_completed
executor = ThreadPoolExecutor(10)
futures = (
executor.submit(SubdirData(Channel(url)).query, package_ref_or_match_spec)
for url in channel_urls
)
return tuple(concat(future.result() for future in as_completed(futures)))
except RuntimeError as e: # pragma: no cover
# concurrent.futures is only available in Python >= 3.2 or if futures is installed
# RuntimeError is thrown if number of threads are limited by OS
raise
finally:
if executor:
executor.shutdown(wait=True)
|
https://github.com/conda/conda/issues/6624
|
error: RuntimeError("generator didn't stop after throw()",)
command: /home/mholekev/miniconda3/bin/conda install --yes numpy scipy matplotlib jupyter git pandas
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/2.6.32-696.10.3.el6.x86_64 centos/6.7 glibc/2.12
_messageid: -9223372036842075552
_messagetime: 1514766990662 / 2017-12-31 18:36:30
Traceback (most recent call last):
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/common/io.py", line 399, in backdown_thread_pool
yield ThreadPoolExecutor(max_workers)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 214, in get_reduced_index
new_records = query_all(spec)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 187, in query_all
return tuple(concat(future.result() for future in as_completed(futures)))
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 187, in <genexpr>
return tuple(concat(future.result() for future in as_completed(futures)))
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/_base.py", line 217, in as_completed
fs = set(fs)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 186, in <genexpr>
futures = (executor.submit(sd.query, spec) for sd in subdir_datas)
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/thread.py", line 123, in submit
self._adjust_thread_count()
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/thread.py", line 142, in _adjust_thread_count
t.start()
File "/home/mholekev/miniconda3/lib/python3.6/threading.py", line 846, in start
_start_new_thread(self._bootstrap, ())
RuntimeError: can't start new thread
|
RuntimeError
|
def backdown_thread_pool(max_workers=10):
"""Tries to create an executor with max_workers, but will back down ultimately to a single
thread of the OS decides you can't have more than one.
"""
from concurrent.futures import (
_base,
) # These "_" imports are gross, but I don't think there's an alternative # NOQA
from concurrent.futures.thread import _WorkItem
class CondaThreadPoolExecutor(ThreadPoolExecutor):
def submit(self, fn, *args, **kwargs):
with self._shutdown_lock:
if self._shutdown:
raise RuntimeError("cannot schedule new futures after shutdown")
f = _base.Future()
w = _WorkItem(f, fn, args, kwargs)
self._work_queue.put(w)
try:
self._adjust_thread_count()
except RuntimeError:
# RuntimeError: can't start new thread
# See https://github.com/conda/conda/issues/6624
if len(self._threads) > 0:
# It's ok to not be able to start new threads if we already have at least
# one thread alive.
pass
else:
raise
return f
try:
yield CondaThreadPoolExecutor(max_workers)
except RuntimeError as e: # pragma: no cover
# RuntimeError is thrown if number of threads are limited by OS
log.debug(repr(e))
try:
yield CondaThreadPoolExecutor(floor(max_workers / 2))
except RuntimeError as e:
log.debug(repr(e))
yield CondaThreadPoolExecutor(1)
|
def backdown_thread_pool(max_workers=10):
"""Tries to create an executor with max_workers, but will back down ultimately to a single
thread of the OS decides you can't have more than one.
"""
try:
yield ThreadPoolExecutor(max_workers)
except RuntimeError as e: # pragma: no cover
# RuntimeError is thrown if number of threads are limited by OS
log.debug(repr(e))
try:
yield ThreadPoolExecutor(floor(max_workers / 2))
except RuntimeError as e:
log.debug(repr(e))
yield ThreadPoolExecutor(1)
|
https://github.com/conda/conda/issues/6624
|
error: RuntimeError("generator didn't stop after throw()",)
command: /home/mholekev/miniconda3/bin/conda install --yes numpy scipy matplotlib jupyter git pandas
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/2.6.32-696.10.3.el6.x86_64 centos/6.7 glibc/2.12
_messageid: -9223372036842075552
_messagetime: 1514766990662 / 2017-12-31 18:36:30
Traceback (most recent call last):
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/common/io.py", line 399, in backdown_thread_pool
yield ThreadPoolExecutor(max_workers)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 214, in get_reduced_index
new_records = query_all(spec)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 187, in query_all
return tuple(concat(future.result() for future in as_completed(futures)))
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 187, in <genexpr>
return tuple(concat(future.result() for future in as_completed(futures)))
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/_base.py", line 217, in as_completed
fs = set(fs)
File "/home/mholekev/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 186, in <genexpr>
futures = (executor.submit(sd.query, spec) for sd in subdir_datas)
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/thread.py", line 123, in submit
self._adjust_thread_count()
File "/home/mholekev/miniconda3/lib/python3.6/concurrent/futures/thread.py", line 142, in _adjust_thread_count
t.start()
File "/home/mholekev/miniconda3/lib/python3.6/threading.py", line 846, in start
_start_new_thread(self._bootstrap, ())
RuntimeError: can't start new thread
|
RuntimeError
|
def _load_single_record(self, prefix_record_json_path):
log.trace("loading prefix record %s", prefix_record_json_path)
with open(prefix_record_json_path) as fh:
try:
json_data = json_load(fh.read())
except JSONDecodeError:
raise CorruptedEnvironmentError(self.prefix_path, prefix_record_json_path)
prefix_record = PrefixRecord(**json_data)
self.__prefix_records[prefix_record.name] = prefix_record
|
def _load_single_record(self, prefix_record_json_path):
log.trace("loading prefix record %s", prefix_record_json_path)
with open(prefix_record_json_path) as fh:
json_data = json_load(fh.read())
prefix_record = PrefixRecord(**json_data)
self.__prefix_records[prefix_record.name] = prefix_record
|
https://github.com/conda/conda/issues/6390
|
Traceback (most recent call last):
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/site-packages/conda/exceptions.py", line 640, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/site-packages/conda/cli/main.py", line 140, in _main
exit_code = args.func(args, p)
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/site-packages/conda/cli/main_list.py", line 242, in execute
show_channel_urls=context.show_channel_urls)
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/site-packages/conda/cli/main_list.py", line 172, in print_packages
installed = linked(prefix)
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/site-packages/conda/core/linked_data.py", line 123, in linked
return set(linked_data(prefix, ignore_channels=ignore_channels).keys())
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/site-packages/conda/core/linked_data.py", line 115, in linked_data
load_linked_data(prefix, dist_name, ignore_channels=ignore_channels)
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/site-packages/conda/core/linked_data.py", line 36, in load_linked_data
rec = json.load(fi)
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/json/__init__.py", line 299, in load
parse_constant=parse_constant, object_pairs_hook=object_pairs_hook, **kw)
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/json/__init__.py", line 354, in loads
return _default_decoder.decode(s)
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/json/decoder.py", line 339, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/home/dhj/anaconda3-5.0.1/lib/python3.6/json/decoder.py", line 357, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
|
json.decoder.JSONDecodeError
|
def solve_final_state(
self, deps_modifier=NULL, prune=NULL, ignore_pinned=NULL, force_remove=NULL
):
"""Gives the final, solved state of the environment.
Args:
deps_modifier (DepsModifier):
An optional flag indicating special solver handling for dependencies. The
default solver behavior is to be as conservative as possible with dependency
updates (in the case the dependency already exists in the environment), while
still ensuring all dependencies are satisfied. Options include
* NO_DEPS
* ONLY_DEPS
* UPDATE_DEPS
* UPDATE_DEPS_ONLY_DEPS
prune (bool):
If ``True``, the solution will not contain packages that were
previously brought into the environment as dependencies but are no longer
required as dependencies and are not user-requested.
ignore_pinned (bool):
If ``True``, the solution will ignore pinned package configuration
for the prefix.
force_remove (bool):
Forces removal of a package without removing packages that depend on it.
Returns:
Tuple[PackageRef]:
In sorted dependency order from roots to leaves, the package references for
the solved state of the environment.
"""
prune = context.prune if prune is NULL else prune
ignore_pinned = context.ignore_pinned if ignore_pinned is NULL else ignore_pinned
deps_modifier = context.deps_modifier if deps_modifier is NULL else deps_modifier
if isinstance(deps_modifier, string_types):
deps_modifier = DepsModifier(deps_modifier.lower())
specs_to_remove = self.specs_to_remove
specs_to_add = self.specs_to_add
# force_remove is a special case where we return early
if specs_to_remove and force_remove:
if specs_to_add:
raise NotImplementedError()
index, r = self._prepare(specs_to_remove)
solution = tuple(
Dist(rec)
for rec in PrefixData(self.prefix).iter_records()
if not any(spec.match(rec) for spec in specs_to_remove)
)
return IndexedSet(
index[d] for d in r.dependency_sort({d.name: d for d in solution})
)
log.debug(
"solving prefix %s\n specs_to_remove: %s\n specs_to_add: %s\n prune: %s",
self.prefix,
specs_to_remove,
specs_to_add,
prune,
)
# declare starting point, the initial state of the environment
# `solution` and `specs_map` are mutated throughout this method
prefix_data = PrefixData(self.prefix)
solution = tuple(Dist(d) for d in prefix_data.iter_records())
specs_from_history_map = History(self.prefix).get_requested_specs_map()
if (
prune
): # or deps_modifier == DepsModifier.UPDATE_ALL # pending conda/constructor#138
# Users are struggling with the prune functionality in --update-all, due to
# https://github.com/conda/constructor/issues/138. Until that issue is resolved,
# and for the foreseeable future, it's best to be more conservative with --update-all.
# Start with empty specs map for UPDATE_ALL because we're optimizing the update
# only for specs the user has requested; it's ok to remove dependencies.
specs_map = odict()
# However, because of https://github.com/conda/constructor/issues/138, we need
# to hard-code keeping conda, conda-build, and anaconda, if they're already in
# the environment.
solution_pkg_names = set(d.name for d in solution)
ensure_these = (
pkg_name
for pkg_name in {
"anaconda",
"conda",
"conda-build",
}
if pkg_name not in specs_from_history_map and pkg_name in solution_pkg_names
)
for pkg_name in ensure_these:
specs_from_history_map[pkg_name] = MatchSpec(pkg_name)
else:
specs_map = odict((d.name, MatchSpec(d.name)) for d in solution)
# add in historically-requested specs
specs_map.update(specs_from_history_map)
# let's pretend for now that this is the right place to build the index
prepared_specs = set(
concatv(
specs_to_remove,
specs_to_add,
itervalues(specs_from_history_map),
)
)
index, r = self._prepare(prepared_specs)
if specs_to_remove:
# In a previous implementation, we invoked SAT here via `r.remove()` to help with
# spec removal, and then later invoking SAT again via `r.solve()`. Rather than invoking
# SAT for spec removal determination, we can use the DAG and simple tree traversal
# if we're careful about how we handle features. We still invoke sat via `r.solve()`
# later.
_track_fts_specs = (
spec for spec in specs_to_remove if "track_features" in spec
)
feature_names = set(
concat(spec.get_raw_value("track_features") for spec in _track_fts_specs)
)
dag = PrefixDag((index[dist] for dist in solution), itervalues(specs_map))
removed_records = []
for spec in specs_to_remove:
# If the spec was a provides_features spec, then we need to also remove every
# package with a requires_feature that matches the provides_feature. The
# `dag.remove_spec()` method handles that for us.
log.trace("using dag to remove records for %s", spec)
removed_records.extend(dag.remove_spec(spec))
for rec in removed_records:
# We keep specs (minus the feature part) for the non provides_features packages
# if they're in the history specs. Otherwise, we pop them from the specs_map.
rec_has_a_feature = set(rec.features or ()) & feature_names
if rec_has_a_feature and rec.name in specs_from_history_map:
spec = specs_map.get(rec.name, MatchSpec(rec.name))
spec._match_components.pop("features", None)
specs_map[spec.name] = spec
else:
specs_map.pop(rec.name, None)
solution = tuple(Dist(rec) for rec in dag.records)
if not removed_records and not prune:
raise PackagesNotFoundError(tuple(spec.name for spec in specs_to_remove))
# We handle as best as possible environments in inconsistent states. To do this,
# we remove now from consideration the set of packages causing inconsistencies,
# and then we add them back in following the main SAT call.
_, inconsistent_dists = r.bad_installed(solution, ())
add_back_map = {} # name: (dist, spec)
if log.isEnabledFor(DEBUG):
log.debug(
"inconsistent dists: %s",
dashlist(inconsistent_dists) if inconsistent_dists else "None",
)
if inconsistent_dists:
for dist in inconsistent_dists:
# pop and save matching spec in specs_map
add_back_map[dist.name] = (dist, specs_map.pop(dist.name, None))
solution = tuple(dist for dist in solution if dist not in inconsistent_dists)
# For the remaining specs in specs_map, add target to each spec. `target` is a reference
# to the package currently existing in the environment. Setting target instructs the
# solver to not disturb that package if it's not necessary.
# If the spec.name is being modified by inclusion in specs_to_add, we don't set `target`,
# since we *want* the solver to modify/update that package.
#
# TLDR: when working with MatchSpec objects,
# - to minimize the version change, set MatchSpec(name=name, target=dist.full_name)
# - to freeze the package, set all the components of MatchSpec individually
for pkg_name, spec in iteritems(specs_map):
matches_for_spec = tuple(dist for dist in solution if spec.match(index[dist]))
if matches_for_spec:
if len(matches_for_spec) != 1:
raise CondaError(
dals("""
Conda encountered an error with your environment. Please report an issue
at https://github.com/conda/conda/issues/new. In your report, please include
the output of 'conda info' and 'conda list' for the active environment, along
with the command you invoked that resulted in this error.
pkg_name: %s
spec: %s
matches_for_spec: %s
""")
% (
pkg_name,
spec,
dashlist((text_type(s) for s in matches_for_spec), indent=4),
)
)
target_dist = matches_for_spec[0]
if deps_modifier == DepsModifier.FREEZE_INSTALLED:
new_spec = MatchSpec(index[target_dist])
else:
target = Dist(target_dist).full_name
new_spec = MatchSpec(spec, target=target)
specs_map[pkg_name] = new_spec
if log.isEnabledFor(TRACE):
log.trace("specs_map with targets: %s", specs_map)
# If we're in UPDATE_ALL mode, we need to drop all the constraints attached to specs,
# so they can all float and the solver can find the most up-to-date solution. In the case
# of UPDATE_ALL, `specs_map` wasn't initialized with packages from the current environment,
# but *only* historically-requested specs. This lets UPDATE_ALL drop dependencies if
# they're no longer needed, and their presence would otherwise prevent the updated solution
# the user most likely wants.
if deps_modifier == DepsModifier.UPDATE_ALL:
specs_map = {
pkg_name: MatchSpec(spec.name, optional=spec.optional)
for pkg_name, spec in iteritems(specs_map)
}
# As a business rule, we never want to update python beyond the current minor version,
# unless that's requested explicitly by the user (which we actively discourage).
if "python" in specs_map:
python_prefix_rec = prefix_data.get("python")
if python_prefix_rec:
python_spec = specs_map["python"]
if not python_spec.get("version"):
pinned_version = (
get_major_minor_version(python_prefix_rec.version) + ".*"
)
specs_map["python"] = MatchSpec(python_spec, version=pinned_version)
# For the aggressive_update_packages configuration parameter, we strip any target
# that's been set.
if not context.offline:
for spec in context.aggressive_update_packages:
if spec.name in specs_map:
old_spec = specs_map[spec.name]
specs_map[spec.name] = MatchSpec(old_spec, target=None)
if (
context.auto_update_conda
and paths_equal(self.prefix, context.root_prefix)
and any(dist.name == "conda" for dist in solution)
):
specs_map["conda"] = MatchSpec("conda")
# add in explicitly requested specs from specs_to_add
# this overrides any name-matching spec already in the spec map
specs_map.update((s.name, s) for s in specs_to_add)
# collect additional specs to add to the solution
track_features_specs = pinned_specs = ()
if context.track_features:
track_features_specs = tuple(MatchSpec(x + "@") for x in context.track_features)
if not ignore_pinned:
pinned_specs = get_pinned_specs(self.prefix)
final_environment_specs = IndexedSet(
concatv(
itervalues(specs_map),
track_features_specs,
pinned_specs,
)
)
# We've previously checked `solution` for consistency (which at that point was the
# pre-solve state of the environment). Now we check our compiled set of
# `final_environment_specs` for the possibility of a solution. If there are conflicts,
# we can often avoid them by neutering specs that have a target (e.g. removing version
# constraint) and also making them optional. The result here will be less cases of
# `UnsatisfiableError` handed to users, at the cost of more packages being modified
# or removed from the environment.
conflicting_specs = r.get_conflicting_specs(tuple(final_environment_specs))
if log.isEnabledFor(DEBUG):
log.debug("conflicting specs: %s", dashlist(conflicting_specs))
for spec in conflicting_specs:
if spec.target:
final_environment_specs.remove(spec)
neutered_spec = MatchSpec(spec.name, target=spec.target, optional=True)
final_environment_specs.add(neutered_spec)
# Finally! We get to call SAT.
if log.isEnabledFor(DEBUG):
log.debug(
"final specs to add: %s",
dashlist(sorted(text_type(s) for s in final_environment_specs)),
)
solution = r.solve(tuple(final_environment_specs)) # return value is List[dist]
# add back inconsistent packages to solution
if add_back_map:
for name, (dist, spec) in iteritems(add_back_map):
if not any(d.name == name for d in solution):
solution.append(dist)
if spec:
final_environment_specs.add(spec)
# Special case handling for various DepsModifer flags. Maybe this block could be pulled
# out into its own non-public helper method?
if deps_modifier == DepsModifier.NO_DEPS:
# In the NO_DEPS case, we need to start with the original list of packages in the
# environment, and then only modify packages that match specs_to_add or
# specs_to_remove.
_no_deps_solution = IndexedSet(Dist(rec) for rec in prefix_data.iter_records())
only_remove_these = set(
dist
for spec in specs_to_remove
for dist in _no_deps_solution
if spec.match(index[dist])
)
_no_deps_solution -= only_remove_these
only_add_these = set(
dist
for spec in specs_to_add
for dist in solution
if spec.match(index[dist])
)
remove_before_adding_back = set(dist.name for dist in only_add_these)
_no_deps_solution = IndexedSet(
dist
for dist in _no_deps_solution
if dist.name not in remove_before_adding_back
)
_no_deps_solution |= only_add_these
solution = _no_deps_solution
elif deps_modifier == DepsModifier.ONLY_DEPS:
# Using a special instance of the DAG to remove leaf nodes that match the original
# specs_to_add. It's important to only remove leaf nodes, because a typical use
# might be `conda install --only-deps python=2 flask`, and in that case we'd want
# to keep python.
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
elif deps_modifier in (
DepsModifier.UPDATE_DEPS,
DepsModifier.UPDATE_DEPS_ONLY_DEPS,
):
# Here we have to SAT solve again :( It's only now that we know the dependency
# chain of specs_to_add.
specs_to_add_names = set(spec.name for spec in specs_to_add)
update_names = set()
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
for spec in specs_to_add:
node = dag.get_node_by_name(spec.name)
for ascendant in node.all_ascendants():
ascendant_name = ascendant.record.name
if ascendant_name not in specs_to_add_names:
update_names.add(ascendant_name)
grouped_specs = groupby(
lambda s: s.name in update_names, final_environment_specs
)
new_final_environment_specs = set(grouped_specs.get(False, ()))
update_specs = set(
MatchSpec(spec.name, optional=spec.optional)
for spec in grouped_specs.get(True, ())
)
final_environment_specs = new_final_environment_specs | update_specs
solution = r.solve(final_environment_specs)
if deps_modifier == DepsModifier.UPDATE_DEPS_ONLY_DEPS:
# duplicated from DepsModifier.ONLY_DEPS
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
if prune:
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
dag.prune()
solution = tuple(Dist(rec) for rec in dag.records)
self._check_solution(solution, pinned_specs)
solution = IndexedSet(r.dependency_sort({d.name: d for d in solution}))
log.debug(
"solved prefix %s\n solved_linked_dists:\n %s\n",
self.prefix,
"\n ".join(text_type(d) for d in solution),
)
return IndexedSet(index[d] for d in solution)
|
def solve_final_state(
self, deps_modifier=NULL, prune=NULL, ignore_pinned=NULL, force_remove=NULL
):
"""Gives the final, solved state of the environment.
Args:
deps_modifier (DepsModifier):
An optional flag indicating special solver handling for dependencies. The
default solver behavior is to be as conservative as possible with dependency
updates (in the case the dependency already exists in the environment), while
still ensuring all dependencies are satisfied. Options include
* NO_DEPS
* ONLY_DEPS
* UPDATE_DEPS
* UPDATE_DEPS_ONLY_DEPS
prune (bool):
If ``True``, the solution will not contain packages that were
previously brought into the environment as dependencies but are no longer
required as dependencies and are not user-requested.
ignore_pinned (bool):
If ``True``, the solution will ignore pinned package configuration
for the prefix.
force_remove (bool):
Forces removal of a package without removing packages that depend on it.
Returns:
Tuple[PackageRef]:
In sorted dependency order from roots to leaves, the package references for
the solved state of the environment.
"""
prune = context.prune if prune is NULL else prune
ignore_pinned = context.ignore_pinned if ignore_pinned is NULL else ignore_pinned
deps_modifier = context.deps_modifier if deps_modifier is NULL else deps_modifier
if isinstance(deps_modifier, string_types):
deps_modifier = DepsModifier(deps_modifier.lower())
specs_to_remove = self.specs_to_remove
specs_to_add = self.specs_to_add
# force_remove is a special case where we return early
if specs_to_remove and force_remove:
if specs_to_add:
raise NotImplementedError()
index, r = self._prepare(specs_to_remove)
solution = tuple(
Dist(rec)
for rec in PrefixData(self.prefix).iter_records()
if not any(spec.match(rec) for spec in specs_to_remove)
)
return IndexedSet(
index[d] for d in r.dependency_sort({d.name: d for d in solution})
)
log.debug(
"solving prefix %s\n specs_to_remove: %s\n specs_to_add: %s\n prune: %s",
self.prefix,
specs_to_remove,
specs_to_add,
prune,
)
# declare starting point, the initial state of the environment
# `solution` and `specs_map` are mutated throughout this method
prefix_data = PrefixData(self.prefix)
solution = tuple(Dist(d) for d in prefix_data.iter_records())
specs_from_history_map = History(self.prefix).get_requested_specs_map()
if (
prune
): # or deps_modifier == DepsModifier.UPDATE_ALL # pending conda/constructor#138
# Users are struggling with the prune functionality in --update-all, due to
# https://github.com/conda/constructor/issues/138. Until that issue is resolved,
# and for the foreseeable future, it's best to be more conservative with --update-all.
# Start with empty specs map for UPDATE_ALL because we're optimizing the update
# only for specs the user has requested; it's ok to remove dependencies.
specs_map = odict()
# However, because of https://github.com/conda/constructor/issues/138, we need
# to hard-code keeping conda, conda-build, and anaconda, if they're already in
# the environment.
solution_pkg_names = set(d.name for d in solution)
ensure_these = (
pkg_name
for pkg_name in {
"anaconda",
"conda",
"conda-build",
}
if pkg_name not in specs_from_history_map and pkg_name in solution_pkg_names
)
for pkg_name in ensure_these:
specs_from_history_map[pkg_name] = MatchSpec(pkg_name)
else:
specs_map = odict((d.name, MatchSpec(d.name)) for d in solution)
# add in historically-requested specs
specs_map.update(specs_from_history_map)
# let's pretend for now that this is the right place to build the index
prepared_specs = set(
concatv(
specs_to_remove,
specs_to_add,
itervalues(specs_from_history_map),
)
)
index, r = self._prepare(prepared_specs)
if specs_to_remove:
# In a previous implementation, we invoked SAT here via `r.remove()` to help with
# spec removal, and then later invoking SAT again via `r.solve()`. Rather than invoking
# SAT for spec removal determination, we can use the DAG and simple tree traversal
# if we're careful about how we handle features. We still invoke sat via `r.solve()`
# later.
_track_fts_specs = (
spec for spec in specs_to_remove if "track_features" in spec
)
feature_names = set(
concat(spec.get_raw_value("track_features") for spec in _track_fts_specs)
)
dag = PrefixDag((index[dist] for dist in solution), itervalues(specs_map))
removed_records = []
for spec in specs_to_remove:
# If the spec was a provides_features spec, then we need to also remove every
# package with a requires_feature that matches the provides_feature. The
# `dag.remove_spec()` method handles that for us.
log.trace("using dag to remove records for %s", spec)
removed_records.extend(dag.remove_spec(spec))
for rec in removed_records:
# We keep specs (minus the feature part) for the non provides_features packages
# if they're in the history specs. Otherwise, we pop them from the specs_map.
rec_has_a_feature = set(rec.features or ()) & feature_names
if rec_has_a_feature and rec.name in specs_from_history_map:
spec = specs_map.get(rec.name, MatchSpec(rec.name))
spec._match_components.pop("features", None)
specs_map[spec.name] = spec
else:
specs_map.pop(rec.name, None)
solution = tuple(Dist(rec) for rec in dag.records)
if not removed_records and not prune:
raise PackagesNotFoundError(tuple(spec.name for spec in specs_to_remove))
# We handle as best as possible environments in inconsistent states. To do this,
# we remove now from consideration the set of packages causing inconsistencies,
# and then we add them back in following the main SAT call.
_, inconsistent_dists = r.bad_installed(solution, ())
add_back_map = {} # name: (dist, spec)
if log.isEnabledFor(DEBUG):
log.debug(
"inconsistent dists: %s",
dashlist(inconsistent_dists) if inconsistent_dists else "None",
)
if inconsistent_dists:
for dist in inconsistent_dists:
# pop and save matching spec in specs_map
add_back_map[dist.name] = (dist, specs_map.pop(dist.name, None))
solution = tuple(dist for dist in solution if dist not in inconsistent_dists)
# For the remaining specs in specs_map, add target to each spec. `target` is a reference
# to the package currently existing in the environment. Setting target instructs the
# solver to not disturb that package if it's not necessary.
# If the spec.name is being modified by inclusion in specs_to_add, we don't set `target`,
# since we *want* the solver to modify/update that package.
#
# TLDR: when working with MatchSpec objects,
# - to minimize the version change, set MatchSpec(name=name, target=dist.full_name)
# - to freeze the package, set all the components of MatchSpec individually
for pkg_name, spec in iteritems(specs_map):
matches_for_spec = tuple(dist for dist in solution if spec.match(index[dist]))
if matches_for_spec:
if len(matches_for_spec) != 1:
raise CondaError(
dals("""
Conda encountered an error with your environment. Please report an issue
at https://github.com/conda/conda/issues/new. In your report, please include
the output of 'conda info' and 'conda list' for the active environment, along
with the command you invoked that resulted in this error.
pkg_name: %s
spec: %s
matches_for_spec: %s
""")
% (
pkg_name,
spec,
dashlist((text_type(s) for s in matches_for_spec), indent=4),
)
)
target_dist = matches_for_spec[0]
if deps_modifier == DepsModifier.FREEZE_INSTALLED:
new_spec = MatchSpec(index[target_dist])
else:
target = Dist(target_dist).full_name
new_spec = MatchSpec(spec, target=target)
specs_map[pkg_name] = new_spec
if log.isEnabledFor(TRACE):
log.trace("specs_map with targets: %s", specs_map)
# If we're in UPDATE_ALL mode, we need to drop all the constraints attached to specs,
# so they can all float and the solver can find the most up-to-date solution. In the case
# of UPDATE_ALL, `specs_map` wasn't initialized with packages from the current environment,
# but *only* historically-requested specs. This lets UPDATE_ALL drop dependencies if
# they're no longer needed, and their presence would otherwise prevent the updated solution
# the user most likely wants.
if deps_modifier == DepsModifier.UPDATE_ALL:
specs_map = {
pkg_name: MatchSpec(spec.name, optional=spec.optional)
for pkg_name, spec in iteritems(specs_map)
}
# As a business rule, we never want to update python beyond the current minor version,
# unless that's requested explicitly by the user (which we actively discourage).
if "python" in specs_map:
python_prefix_rec = prefix_data.get("python")
if python_prefix_rec:
python_spec = specs_map["python"]
if not python_spec.get("version"):
pinned_version = (
get_major_minor_version(python_prefix_rec.version) + ".*"
)
specs_map["python"] = MatchSpec(python_spec, version=pinned_version)
# For the aggressive_update_packages configuration parameter, we strip any target
# that's been set.
if not context.offline:
for spec in context.aggressive_update_packages:
if spec.name in specs_map:
old_spec = specs_map[spec.name]
specs_map[spec.name] = MatchSpec(old_spec, target=None)
if (
context.auto_update_conda
and paths_equal(self.prefix, context.root_prefix)
and any(dist.name == "conda" for dist in solution)
):
specs_map["conda"] = MatchSpec("conda")
# add in explicitly requested specs from specs_to_add
# this overrides any name-matching spec already in the spec map
specs_map.update((s.name, s) for s in specs_to_add)
# collect additional specs to add to the solution
track_features_specs = pinned_specs = ()
if context.track_features:
track_features_specs = tuple(MatchSpec(x + "@") for x in context.track_features)
if not ignore_pinned:
pinned_specs = get_pinned_specs(self.prefix)
final_environment_specs = IndexedSet(
concatv(
itervalues(specs_map),
track_features_specs,
pinned_specs,
)
)
# We've previously checked `solution` for consistency (which at that point was the
# pre-solve state of the environment). Now we check our compiled set of
# `final_environment_specs` for the possibility of a solution. If there are conflicts,
# we can often avoid them by neutering specs that have a target (e.g. removing version
# constraint) and also making them optional. The result here will be less cases of
# `UnsatisfiableError` handed to users, at the cost of more packages being modified
# or removed from the environment.
conflicting_specs = r.get_conflicting_specs(tuple(final_environment_specs))
if log.isEnabledFor(DEBUG):
log.debug("conflicting specs: %s", dashlist(conflicting_specs))
for spec in conflicting_specs:
if spec.target:
final_environment_specs.remove(spec)
neutered_spec = MatchSpec(spec.name, target=spec.target, optional=True)
final_environment_specs.add(neutered_spec)
# Finally! We get to call SAT.
if log.isEnabledFor(DEBUG):
log.debug(
"final specs to add: %s",
dashlist(sorted(text_type(s) for s in final_environment_specs)),
)
solution = r.solve(tuple(final_environment_specs)) # return value is List[dist]
# add back inconsistent packages to solution
if add_back_map:
for name, (dist, spec) in iteritems(add_back_map):
if not any(d.name == name for d in solution):
solution.append(dist)
if spec:
final_environment_specs.add(spec)
# Special case handling for various DepsModifer flags. Maybe this block could be pulled
# out into its own non-public helper method?
if deps_modifier == DepsModifier.NO_DEPS:
# In the NO_DEPS case, we need to start with the original list of packages in the
# environment, and then only modify packages that match specs_to_add or
# specs_to_remove.
_no_deps_solution = IndexedSet(Dist(rec) for rec in prefix_data.iter_records())
only_remove_these = set(
dist
for spec in specs_to_remove
for dist in _no_deps_solution
if spec.match(index[dist])
)
_no_deps_solution -= only_remove_these
only_add_these = set(
dist
for spec in specs_to_add
for dist in solution
if spec.match(index[dist])
)
remove_before_adding_back = set(dist.name for dist in only_add_these)
_no_deps_solution = IndexedSet(
dist
for dist in _no_deps_solution
if dist.name not in remove_before_adding_back
)
_no_deps_solution |= only_add_these
solution = _no_deps_solution
elif deps_modifier == DepsModifier.ONLY_DEPS:
# Using a special instance of the DAG to remove leaf nodes that match the original
# specs_to_add. It's important to only remove leaf nodes, because a typical use
# might be `conda install --only-deps python=2 flask`, and in that case we'd want
# to keep python.
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
elif deps_modifier in (
DepsModifier.UPDATE_DEPS,
DepsModifier.UPDATE_DEPS_ONLY_DEPS,
):
# Here we have to SAT solve again :( It's only now that we know the dependency
# chain of specs_to_add.
specs_to_add_names = set(spec.name for spec in specs_to_add)
update_names = set()
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
for spec in specs_to_add:
node = dag.get_node_by_name(spec.name)
for ascendant in node.all_ascendants():
ascendant_name = ascendant.record.name
if ascendant_name not in specs_to_add_names:
update_names.add(ascendant_name)
grouped_specs = groupby(
lambda s: s.name in update_names, final_environment_specs
)
new_final_environment_specs = set(grouped_specs[False])
update_specs = set(
MatchSpec(spec.name, optional=spec.optional) for spec in grouped_specs[True]
)
final_environment_specs = new_final_environment_specs | update_specs
solution = r.solve(final_environment_specs)
if deps_modifier == DepsModifier.UPDATE_DEPS_ONLY_DEPS:
# duplicated from DepsModifier.ONLY_DEPS
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
if prune:
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
dag.prune()
solution = tuple(Dist(rec) for rec in dag.records)
self._check_solution(solution, pinned_specs)
solution = IndexedSet(r.dependency_sort({d.name: d for d in solution}))
log.debug(
"solved prefix %s\n solved_linked_dists:\n %s\n",
self.prefix,
"\n ".join(text_type(d) for d in solution),
)
return IndexedSet(index[d] for d in solution)
|
https://github.com/conda/conda/issues/6693
|
error: KeyError(True,)
command: /home/jgrnt/miniconda/bin/conda install --update-deps python= numpy nose scipy matplotlib pandas pytest h5py mkl mkl-service
user_agent: conda/4.4.7 requests/2.18.4 CPython/3.6.3 Linux/4.14.4-gentoo gentoo/2.4.1 glibc/2.25
_messageid: -9223372036837525416
_messagetime: 1515513689937 / 2018-01-09 10:01:29
Traceback (most recent call last):
File "/home/jgrnt/miniconda/lib/python3.6/site-packages/conda/exceptions.py", line 743, in __call__
return func(*args, **kwargs)
File "/home/jgrnt/miniconda/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/jgrnt/miniconda/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 76, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/jgrnt/miniconda/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/jgrnt/miniconda/lib/python3.6/site-packages/conda/cli/install.py", line 236, in install
force_reinstall=context.force,
File "/home/jgrnt/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 504, in solve_for_transaction
force_remove, force_reinstall)
File "/home/jgrnt/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 437, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File "/home/jgrnt/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 385, in solve_final_state
for spec in grouped_specs[True])
KeyError: True
|
KeyError
|
def _replace_prefix_in_path(self, old_prefix, new_prefix, starting_path_dirs=None):
if starting_path_dirs is None:
path_list = self._get_starting_path_list()
else:
path_list = list(starting_path_dirs)
if on_win: # pragma: unix no cover
if old_prefix is not None:
# windows has a nasty habit of adding extra Library\bin directories
prefix_dirs = tuple(self._get_path_dirs(old_prefix))
try:
first_idx = path_list.index(prefix_dirs[0])
except ValueError:
first_idx = 0
else:
last_idx = path_list.index(prefix_dirs[-1])
del path_list[first_idx : last_idx + 1]
else:
first_idx = 0
if new_prefix is not None:
path_list[first_idx:first_idx] = list(self._get_path_dirs(new_prefix))
else:
if old_prefix is not None:
try:
idx = path_list.index(join(old_prefix, "bin"))
except ValueError:
idx = 0
else:
del path_list[idx]
else:
idx = 0
if new_prefix is not None:
path_list.insert(idx, join(new_prefix, "bin"))
return self.path_conversion(path_list)
|
def _replace_prefix_in_path(self, old_prefix, new_prefix, starting_path_dirs=None):
if starting_path_dirs is None:
path_list = self._get_starting_path_list()
else:
path_list = list(starting_path_dirs)
if on_win: # pragma: unix no cover
# windows has a nasty habit of adding extra Library\bin directories
prefix_dirs = tuple(self._get_path_dirs(old_prefix))
try:
first_idx = path_list.index(prefix_dirs[0])
except ValueError:
first_idx = 0
else:
last_idx = path_list.index(prefix_dirs[-1])
del path_list[first_idx : last_idx + 1]
if new_prefix is not None:
path_list[first_idx:first_idx] = list(self._get_path_dirs(new_prefix))
else:
try:
idx = path_list.index(join(old_prefix, "bin"))
except ValueError:
idx = 0
else:
del path_list[idx]
if new_prefix is not None:
path_list.insert(idx, join(new_prefix, "bin"))
return self.path_conversion(path_list)
|
https://github.com/conda/conda/issues/6627
|
error: AttributeError("'NoneType' object has no attribute 'endswith'",)
command: /home/wang/anaconda2/bin/conda shell.posix activate py2
user_agent: conda/4.4.4 requests/2.18.4 CPython/2.7.13 Linux/3.19.0-42-generic ubuntu/14.04 glibc/2.19
_messageid: -9223372036842325539
_messagetime: 1514696872936 / 2017-12-30 23:07:52
Traceback (most recent call last):
File "/home/wang/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 111, in main
return activator_main()
File "/home/wang/anaconda2/lib/python2.7/site-packages/conda/activate.py", line 529, in main
sys.stdout.write(activator.execute())
File "/home/wang/anaconda2/lib/python2.7/site-packages/conda/activate.py", line 149, in execute
return getattr(self, self.command)()
File "/home/wang/anaconda2/lib/python2.7/site-packages/conda/activate.py", line 135, in activate
return self._finalize(self._yield_commands(self.build_activate(self.env_name_or_prefix)),
File "/home/wang/anaconda2/lib/python2.7/site-packages/conda/activate.py", line 247, in build_activate
new_path = self.pathsep_join(self._replace_prefix_in_path(old_conda_prefix, prefix))
File "/home/wang/anaconda2/lib/python2.7/site-packages/conda/activate.py", line 411, in _replace_prefix_in_path
idx = path_list.index(join(old_prefix, 'bin'))
File "/home/wang/anaconda2/lib/python2.7/posixpath.py", line 70, in join
elif path == '' or path.endswith('/'):
AttributeError: 'NoneType' object has no attribute 'endswith'
|
AttributeError
|
def from_string(cls, string, channel_override=NULL):
string = text_type(string)
if is_url(string) and channel_override == NULL:
return cls.from_url(string)
if string.endswith("@"):
return cls(
channel="@",
name=string,
version="",
build_string="",
build_number=0,
dist_name=string,
)
REGEX_STR = (
r"(?:([^\s\[\]]+)::)?" # optional channel
r"([^\s\[\]]+)" # 3.x dist
r"(?:\[([a-zA-Z0-9_-]+)\])?" # with_features_depends
)
channel, original_dist, w_f_d = re.search(REGEX_STR, string).groups()
if original_dist.endswith(CONDA_TARBALL_EXTENSION):
original_dist = original_dist[: -len(CONDA_TARBALL_EXTENSION)]
if channel_override != NULL:
channel = channel_override
if not channel:
channel = UNKNOWN_CHANNEL
# enforce dist format
dist_details = cls.parse_dist_name(original_dist)
return cls(
channel=channel,
name=dist_details.name,
version=dist_details.version,
build_string=dist_details.build_string,
build_number=dist_details.build_number,
dist_name=original_dist,
)
|
def from_string(cls, string, channel_override=NULL):
string = text_type(string)
if is_url(string) and channel_override == NULL:
return cls.from_url(string)
if string.endswith("@"):
return cls(
channel="@",
name=string,
version="",
build_string="",
build_number=0,
dist_name=string,
)
REGEX_STR = (
r"(?:([^\s\[\]]+)::)?" # optional channel
r"([^\s\[\]]+)" # 3.x dist
r"(?:\[([a-zA-Z0-9_-]+)\])?" # with_features_depends
)
channel, original_dist, w_f_d = re.search(REGEX_STR, string).groups()
if original_dist.endswith(CONDA_TARBALL_EXTENSION):
original_dist = original_dist[: -len(CONDA_TARBALL_EXTENSION)]
if channel_override != NULL:
channel = channel_override
if channel is None:
channel = UNKNOWN_CHANNEL
# enforce dist format
dist_details = cls.parse_dist_name(original_dist)
return cls(
channel=channel,
name=dist_details.name,
version=dist_details.version,
build_string=dist_details.build_string,
build_number=dist_details.build_number,
dist_name=original_dist,
)
|
https://github.com/conda/conda/issues/6665
|
Solving environment: failed
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 76, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/install.py", line 236, in install
force_reinstall=context.force,
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 504, in solve_for_transaction
force_remove, force_reinstall)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 437, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 407, in solve_final_state
return IndexedSet(index[d] for d in solution)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/_vendor/boltons/setutils.py", line 90, in __init__
self.update(other)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/_vendor/boltons/setutils.py", line 304, in update
for o in other:
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 407, in <genexpr>
return IndexedSet(index[d] for d in solution)
KeyError: Dist(channel='<unknown>', dist_name='dask-0.16.0-py36h73d177f_0', name='dask', version='0.16.0', build_string='py36h73d177f_0', build_number=0, base_url=None, platform=None)
`$ /mnt/data/home/psommer/miniconda/bin/conda install anaconda-client`
environment variables:
CIO_TEST=<not set>
CONDA_DEFAULT_ENV=root
CONDA_PATH_BACKUP=/mnt/data/home/psommer/bin:/mnt/data/home/psommer/.local/bin:/usr/loca
l/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/lo
cal/games:/snap/bin
CONDA_PREFIX=/mnt/data/home/psommer/miniconda
CONDA_PS1_BACKUP=
CONDA_ROOT=/mnt/data/home/psommer/miniconda
PATH=/mnt/data/home/psommer/miniconda/bin:/mnt/data/home/psommer/bin:/mnt/d
ata/home/psommer/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/
usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
active environment : base
active env location : /mnt/data/home/psommer/miniconda
user config file : /mnt/data/home/psommer/.condarc
populated config files :
conda version : 4.4.6
conda-build version : not installed
python version : 3.6.3.final.0
base environment : /mnt/data/home/psommer/miniconda (writable)
channel URLs : https://repo.continuum.io/pkgs/main/linux-64
https://repo.continuum.io/pkgs/main/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
package cache : /mnt/data/home/psommer/miniconda/pkgs
/mnt/data/home/psommer/.conda/pkgs
envs directories : /mnt/data/home/psommer/miniconda/envs
/mnt/data/home/psommer/.conda/envs
platform : linux-64
user-agent : conda/4.4.6 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-104-generic ubuntu/16.04 glibc/2.23
UID:GID : 1042:1025
netrc file : None
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
|
KeyError
|
def dump(self, instance, instance_type, val):
if val:
return text_type(val)
else:
val = instance.channel # call __get__
return text_type(val)
|
def dump(self, instance, instance_type, val):
return val and text_type(val)
|
https://github.com/conda/conda/issues/6665
|
Solving environment: failed
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 76, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/install.py", line 236, in install
force_reinstall=context.force,
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 504, in solve_for_transaction
force_remove, force_reinstall)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 437, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 407, in solve_final_state
return IndexedSet(index[d] for d in solution)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/_vendor/boltons/setutils.py", line 90, in __init__
self.update(other)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/_vendor/boltons/setutils.py", line 304, in update
for o in other:
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 407, in <genexpr>
return IndexedSet(index[d] for d in solution)
KeyError: Dist(channel='<unknown>', dist_name='dask-0.16.0-py36h73d177f_0', name='dask', version='0.16.0', build_string='py36h73d177f_0', build_number=0, base_url=None, platform=None)
`$ /mnt/data/home/psommer/miniconda/bin/conda install anaconda-client`
environment variables:
CIO_TEST=<not set>
CONDA_DEFAULT_ENV=root
CONDA_PATH_BACKUP=/mnt/data/home/psommer/bin:/mnt/data/home/psommer/.local/bin:/usr/loca
l/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/lo
cal/games:/snap/bin
CONDA_PREFIX=/mnt/data/home/psommer/miniconda
CONDA_PS1_BACKUP=
CONDA_ROOT=/mnt/data/home/psommer/miniconda
PATH=/mnt/data/home/psommer/miniconda/bin:/mnt/data/home/psommer/bin:/mnt/d
ata/home/psommer/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/
usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
active environment : base
active env location : /mnt/data/home/psommer/miniconda
user config file : /mnt/data/home/psommer/.condarc
populated config files :
conda version : 4.4.6
conda-build version : not installed
python version : 3.6.3.final.0
base environment : /mnt/data/home/psommer/miniconda (writable)
channel URLs : https://repo.continuum.io/pkgs/main/linux-64
https://repo.continuum.io/pkgs/main/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
package cache : /mnt/data/home/psommer/miniconda/pkgs
/mnt/data/home/psommer/.conda/pkgs
envs directories : /mnt/data/home/psommer/miniconda/envs
/mnt/data/home/psommer/.conda/envs
platform : linux-64
user-agent : conda/4.4.6 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-104-generic ubuntu/16.04 glibc/2.23
UID:GID : 1042:1025
netrc file : None
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
|
KeyError
|
def from_string(cls, string, channel_override=NULL):
string = text_type(string)
if is_url(string) and channel_override == NULL:
return cls.from_url(string)
if string.endswith("@"):
return cls(
channel="@",
name=string,
version="",
build_string="",
build_number=0,
dist_name=string,
)
REGEX_STR = (
r"(?:([^\s\[\]]+)::)?" # optional channel
r"([^\s\[\]]+)" # 3.x dist
r"(?:\[([a-zA-Z0-9_-]+)\])?" # with_features_depends
)
channel, original_dist, w_f_d = re.search(REGEX_STR, string).groups()
if original_dist.endswith(CONDA_TARBALL_EXTENSION):
original_dist = original_dist[: -len(CONDA_TARBALL_EXTENSION)]
if channel_override != NULL:
channel = channel_override
if channel is None:
channel = UNKNOWN_CHANNEL
# enforce dist format
dist_details = cls.parse_dist_name(original_dist)
return cls(
channel=channel,
name=dist_details.name,
version=dist_details.version,
build_string=dist_details.build_string,
build_number=dist_details.build_number,
dist_name=original_dist,
)
|
def from_string(cls, string, channel_override=NULL):
string = text_type(string)
if is_url(string) and channel_override == NULL:
return cls.from_url(string)
if string.endswith("@"):
return cls(
channel="@",
name=string,
version="",
build_string="",
build_number=0,
dist_name=string,
)
REGEX_STR = (
r"(?:([^\s\[\]]+)::)?" # optional channel
r"([^\s\[\]]+)" # 3.x dist
r"(?:\[([a-zA-Z0-9_-]+)\])?" # with_features_depends
)
channel, original_dist, w_f_d = re.search(REGEX_STR, string).groups()
if original_dist.endswith(CONDA_TARBALL_EXTENSION):
original_dist = original_dist[: -len(CONDA_TARBALL_EXTENSION)]
if channel_override != NULL:
channel = channel_override
elif channel is None:
channel = UNKNOWN_CHANNEL
# enforce dist format
dist_details = cls.parse_dist_name(original_dist)
return cls(
channel=channel,
name=dist_details.name,
version=dist_details.version,
build_string=dist_details.build_string,
build_number=dist_details.build_number,
dist_name=original_dist,
)
|
https://github.com/conda/conda/issues/6665
|
Solving environment: failed
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 76, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/cli/install.py", line 236, in install
force_reinstall=context.force,
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 504, in solve_for_transaction
force_remove, force_reinstall)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 437, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 407, in solve_final_state
return IndexedSet(index[d] for d in solution)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/_vendor/boltons/setutils.py", line 90, in __init__
self.update(other)
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/_vendor/boltons/setutils.py", line 304, in update
for o in other:
File "/mnt/data/home/psommer/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 407, in <genexpr>
return IndexedSet(index[d] for d in solution)
KeyError: Dist(channel='<unknown>', dist_name='dask-0.16.0-py36h73d177f_0', name='dask', version='0.16.0', build_string='py36h73d177f_0', build_number=0, base_url=None, platform=None)
`$ /mnt/data/home/psommer/miniconda/bin/conda install anaconda-client`
environment variables:
CIO_TEST=<not set>
CONDA_DEFAULT_ENV=root
CONDA_PATH_BACKUP=/mnt/data/home/psommer/bin:/mnt/data/home/psommer/.local/bin:/usr/loca
l/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/lo
cal/games:/snap/bin
CONDA_PREFIX=/mnt/data/home/psommer/miniconda
CONDA_PS1_BACKUP=
CONDA_ROOT=/mnt/data/home/psommer/miniconda
PATH=/mnt/data/home/psommer/miniconda/bin:/mnt/data/home/psommer/bin:/mnt/d
ata/home/psommer/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/
usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
active environment : base
active env location : /mnt/data/home/psommer/miniconda
user config file : /mnt/data/home/psommer/.condarc
populated config files :
conda version : 4.4.6
conda-build version : not installed
python version : 3.6.3.final.0
base environment : /mnt/data/home/psommer/miniconda (writable)
channel URLs : https://repo.continuum.io/pkgs/main/linux-64
https://repo.continuum.io/pkgs/main/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
package cache : /mnt/data/home/psommer/miniconda/pkgs
/mnt/data/home/psommer/.conda/pkgs
envs directories : /mnt/data/home/psommer/miniconda/envs
/mnt/data/home/psommer/.conda/envs
platform : linux-64
user-agent : conda/4.4.6 requests/2.18.4 CPython/3.6.3 Linux/4.4.0-104-generic ubuntu/16.04 glibc/2.23
UID:GID : 1042:1025
netrc file : None
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
|
KeyError
|
def build_deactivate(self):
# query environment
old_conda_shlvl = int(os.getenv("CONDA_SHLVL", 0))
old_conda_prefix = os.getenv("CONDA_PREFIX", None)
if old_conda_shlvl <= 0 or old_conda_prefix is None:
return {
"unset_vars": (),
"set_vars": {},
"export_vars": {},
"deactivate_scripts": (),
"activate_scripts": (),
}
deactivate_scripts = self._get_deactivate_scripts(old_conda_prefix)
new_conda_shlvl = old_conda_shlvl - 1
new_path = self.pathsep_join(self._remove_prefix_from_path(old_conda_prefix))
assert old_conda_shlvl > 0
set_vars = {}
if old_conda_shlvl == 1:
# TODO: warn conda floor
conda_prompt_modifier = ""
unset_vars = (
"CONDA_PREFIX",
"CONDA_DEFAULT_ENV",
"CONDA_PYTHON_EXE",
"CONDA_PROMPT_MODIFIER",
)
export_vars = {
"PATH": new_path,
"CONDA_SHLVL": new_conda_shlvl,
}
activate_scripts = ()
else:
new_prefix = os.getenv("CONDA_PREFIX_%d" % new_conda_shlvl)
conda_default_env = self._default_env(new_prefix)
conda_prompt_modifier = self._prompt_modifier(conda_default_env)
unset_vars = ("CONDA_PREFIX_%d" % new_conda_shlvl,)
export_vars = {
"PATH": new_path,
"CONDA_SHLVL": new_conda_shlvl,
"CONDA_PREFIX": new_prefix,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
activate_scripts = self._get_activate_scripts(new_prefix)
self._update_prompt(set_vars, conda_prompt_modifier)
return {
"unset_vars": unset_vars,
"set_vars": set_vars,
"export_vars": export_vars,
"deactivate_scripts": deactivate_scripts,
"activate_scripts": activate_scripts,
}
|
def build_deactivate(self):
# query environment
old_conda_shlvl = int(os.getenv("CONDA_SHLVL", 0))
if old_conda_shlvl <= 0:
return {
"unset_vars": (),
"set_vars": {},
"export_vars": {},
"deactivate_scripts": (),
"activate_scripts": (),
}
old_conda_prefix = os.environ["CONDA_PREFIX"]
deactivate_scripts = self._get_deactivate_scripts(old_conda_prefix)
new_conda_shlvl = old_conda_shlvl - 1
new_path = self.pathsep_join(self._remove_prefix_from_path(old_conda_prefix))
assert old_conda_shlvl > 0
set_vars = {}
if old_conda_shlvl == 1:
# TODO: warn conda floor
conda_prompt_modifier = ""
unset_vars = (
"CONDA_PREFIX",
"CONDA_DEFAULT_ENV",
"CONDA_PYTHON_EXE",
"CONDA_PROMPT_MODIFIER",
)
export_vars = {
"PATH": new_path,
"CONDA_SHLVL": new_conda_shlvl,
}
activate_scripts = ()
else:
new_prefix = os.getenv("CONDA_PREFIX_%d" % new_conda_shlvl)
conda_default_env = self._default_env(new_prefix)
conda_prompt_modifier = self._prompt_modifier(conda_default_env)
unset_vars = ("CONDA_PREFIX_%d" % new_conda_shlvl,)
export_vars = {
"PATH": new_path,
"CONDA_SHLVL": new_conda_shlvl,
"CONDA_PREFIX": new_prefix,
"CONDA_DEFAULT_ENV": conda_default_env,
"CONDA_PROMPT_MODIFIER": conda_prompt_modifier,
}
activate_scripts = self._get_activate_scripts(new_prefix)
self._update_prompt(set_vars, conda_prompt_modifier)
return {
"unset_vars": unset_vars,
"set_vars": set_vars,
"export_vars": export_vars,
"deactivate_scripts": deactivate_scripts,
"activate_scripts": activate_scripts,
}
|
https://github.com/conda/conda/issues/6620
|
error: KeyError(u'CONDA_PREFIX',)
command: D:\Anaconda2\Scripts\conda shell.cmd.exe deactivate deactivate
user_agent: conda/4.4.4 requests/2.18.4 CPython/2.7.14 Windows/10 Windows/10.0.16299
_messageid: -9223372036842425555
_messagetime: 1514685063692 / 2017-12-30 19:51:03
Traceback (most recent call last):
File "D:\Anaconda2\lib\site-packages\conda\cli\main.py", line 111, in main
return activator_main()
File "D:\Anaconda2\lib\site-packages\conda\activate.py", line 529, in main
sys.stdout.write(activator.execute())
File "D:\Anaconda2\lib\site-packages\conda\activate.py", line 149, in execute
return getattr(self, self.command)()
File "D:\Anaconda2\lib\site-packages\conda\activate.py", line 139, in deactivate
return self._finalize(self._yield_commands(self.build_deactivate()),
File "D:\Anaconda2\lib\site-packages\conda\activate.py", line 288, in build_deactivate
old_conda_prefix = os.environ['CONDA_PREFIX']
File "D:\Anaconda2\lib\os.py", line 425, in __getitem__
return self.data[key.upper()]
KeyError: u'CONDA_PREFIX'
|
KeyError
|
def main(argv=None):
argv = argv or sys.argv
assert len(argv) >= 3
assert argv[1].startswith("shell.")
shell = argv[1].replace("shell.", "", 1)
activator_args = argv[2:]
activator = Activator(shell, activator_args)
try:
print(activator.execute(), end="")
return 0
except Exception as e:
from . import CondaError
if isinstance(e, CondaError):
print(text_type(e), file=sys.stderr)
return e.return_code
else:
raise
|
def main(argv=None):
argv = argv or sys.argv
assert len(argv) >= 3
assert argv[1].startswith("shell.")
shell = argv[1].replace("shell.", "", 1)
activator_args = argv[2:]
activator = Activator(shell, activator_args)
try:
sys.stdout.write(activator.execute())
return 0
except Exception as e:
from . import CondaError
if isinstance(e, CondaError):
sys.stderr.write(text_type(e))
return e.return_code
else:
raise
|
https://github.com/conda/conda/issues/6620
|
error: KeyError(u'CONDA_PREFIX',)
command: D:\Anaconda2\Scripts\conda shell.cmd.exe deactivate deactivate
user_agent: conda/4.4.4 requests/2.18.4 CPython/2.7.14 Windows/10 Windows/10.0.16299
_messageid: -9223372036842425555
_messagetime: 1514685063692 / 2017-12-30 19:51:03
Traceback (most recent call last):
File "D:\Anaconda2\lib\site-packages\conda\cli\main.py", line 111, in main
return activator_main()
File "D:\Anaconda2\lib\site-packages\conda\activate.py", line 529, in main
sys.stdout.write(activator.execute())
File "D:\Anaconda2\lib\site-packages\conda\activate.py", line 149, in execute
return getattr(self, self.command)()
File "D:\Anaconda2\lib\site-packages\conda\activate.py", line 139, in deactivate
return self._finalize(self._yield_commands(self.build_deactivate()),
File "D:\Anaconda2\lib\site-packages\conda\activate.py", line 288, in build_deactivate
old_conda_prefix = os.environ['CONDA_PREFIX']
File "D:\Anaconda2\lib\os.py", line 425, in __getitem__
return self.data[key.upper()]
KeyError: u'CONDA_PREFIX'
|
KeyError
|
def determine_target_prefix(ctx, args=None):
"""Get the prefix to operate in. The prefix may not yet exist.
Args:
ctx: the context of conda
args: the argparse args from the command line
Returns: the prefix
Raises: CondaEnvironmentNotFoundError if the prefix is invalid
"""
argparse_args = args or ctx._argparse_args
try:
prefix_name = argparse_args.name
except AttributeError:
prefix_name = None
try:
prefix_path = argparse_args.prefix
except AttributeError:
prefix_path = None
if prefix_name is not None and not prefix_name.strip(): # pragma: no cover
from ..exceptions import ArgumentError
raise ArgumentError("Argument --name requires a value.")
if prefix_path is not None and not prefix_path.strip(): # pragma: no cover
from ..exceptions import ArgumentError
raise ArgumentError("Argument --prefix requires a value.")
if prefix_name is None and prefix_path is None:
return ctx.default_prefix
elif prefix_path is not None:
return expand(prefix_path)
else:
if "/" in prefix_name:
from ..exceptions import CondaValueError
raise CondaValueError(
"'/' not allowed in environment name: %s" % prefix_name
)
if prefix_name in (ROOT_ENV_NAME, "root"):
return ctx.root_prefix
else:
from ..exceptions import EnvironmentNameNotFound
try:
return locate_prefix_by_name(prefix_name)
except EnvironmentNameNotFound:
return join(_first_writable_envs_dir(), prefix_name)
|
def determine_target_prefix(ctx, args=None):
"""Get the prefix to operate in. The prefix may not yet exist.
Args:
ctx: the context of conda
args: the argparse args from the command line
Returns: the prefix
Raises: CondaEnvironmentNotFoundError if the prefix is invalid
"""
argparse_args = args or ctx._argparse_args
try:
prefix_name = argparse_args.name
except AttributeError:
prefix_name = None
try:
prefix_path = argparse_args.prefix
except AttributeError:
prefix_path = None
if prefix_name is None and prefix_path is None:
return ctx.default_prefix
elif prefix_path is not None:
return expand(prefix_path)
else:
if "/" in prefix_name:
from ..exceptions import CondaValueError
raise CondaValueError(
"'/' not allowed in environment name: %s" % prefix_name
)
if prefix_name in (ROOT_ENV_NAME, "root"):
return ctx.root_prefix
else:
from ..exceptions import EnvironmentNameNotFound
try:
return locate_prefix_by_name(prefix_name)
except EnvironmentNameNotFound:
return join(_first_writable_envs_dir(), prefix_name)
|
https://github.com/conda/conda/issues/6629
|
error: AssertionError()
command: /Users/cpthgli/.anyenv/envs/pyenv/versions/default/bin/conda update --name --all --yes
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.4 Darwin/17.3.0 OSX/10.13.2
_messageid: -9223372036843525540
_messagetime: 1514462637935 / 2017-12-28 06:03:57
Traceback (most recent call last):
File "/Users/cpthgli/.anyenv/envs/pyenv/versions/anaconda3-5.0.1/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/Users/cpthgli/.anyenv/envs/pyenv/versions/anaconda3-5.0.1/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/Users/cpthgli/.anyenv/envs/pyenv/versions/anaconda3-5.0.1/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/Users/cpthgli/.anyenv/envs/pyenv/versions/anaconda3-5.0.1/lib/python3.6/site-packages/conda/cli/main_update.py", line 14, in execute
install(args, parser, 'update')
File "/Users/cpthgli/.anyenv/envs/pyenv/versions/anaconda3-5.0.1/lib/python3.6/site-packages/conda/cli/install.py", line 140, in install
prefix = context.target_prefix
File "/Users/cpthgli/.anyenv/envs/pyenv/versions/anaconda3-5.0.1/lib/python3.6/site-packages/conda/base/context.py", line 454, in target_prefix
return determine_target_prefix(self)
File "/Users/cpthgli/.anyenv/envs/pyenv/versions/anaconda3-5.0.1/lib/python3.6/site-packages/conda/base/context.py", line 974, in determine_target_prefix
return locate_prefix_by_name(prefix_name)
File "/Users/cpthgli/.anyenv/envs/pyenv/versions/anaconda3-5.0.1/lib/python3.6/site-packages/conda/base/context.py", line 923, in locate_prefix_by_name
assert name
AssertionError
|
AssertionError
|
def create_cache_dir():
cache_dir = join(PackageCache.first_writable(context.pkgs_dirs).pkgs_dir, "cache")
mkdir_p_sudo_safe(cache_dir)
return cache_dir
|
def create_cache_dir():
cache_dir = join(PackageCache.first_writable(context.pkgs_dirs).pkgs_dir, "cache")
try:
makedirs(cache_dir)
except OSError:
pass
return cache_dir
|
https://github.com/conda/conda/issues/6630
|
error: AssertionError()
command: /opt/intel/intelpython3/bin/conda update --all -y
user_agent: conda/4.4.4 requests/2.18.4 CPython/3.6.3 Linux/4.9.49-moby debian/9 glibc/2.24
_messageid: -9223372036843625573
_messagetime: 1514424955743 / 2017-12-27 19:35:55
Traceback (most recent call last):
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/repodata.py", line 211, in _load
mod_etag_headers.get('_mod'))
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/repodata.py", line 411, in fetch_repodata_remote_request
raise Response304ContentUnchanged()
conda.core.repodata.Response304ContentUnchanged
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/exceptions.py", line 724, in __call__
return func(*args, **kwargs)
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/cli/main_update.py", line 14, in execute
install(args, parser, 'update')
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/cli/install.py", line 236, in install
force_reinstall=context.force,
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/solve.py", line 504, in solve_for_transaction
force_remove, force_reinstall)
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/solve.py", line 437, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/solve.py", line 178, in solve_final_state
index, r = self._prepare(prepared_specs)
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/solve.py", line 560, in _prepare
self.subdirs, prepared_specs)
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/index.py", line 214, in get_reduced_index
new_records = query_all(spec)
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/index.py", line 187, in query_all
return tuple(concat(future.result() for future in as_completed(futures)))
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/repodata.py", line 99, in query
self.load()
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/repodata.py", line 143, in load
_internal_state = self._load()
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/core/repodata.py", line 215, in _load
touch(self.cache_path_json)
File "/opt/intel/intelpython3/lib/python3.6/site-packages/conda/gateways/disk/update.py", line 80, in touch
assert isdir(dirname(path))
AssertionError
|
AssertionError
|
def _load(self):
try:
mtime = getmtime(self.cache_path_json)
except (IOError, OSError):
log.debug(
"No local cache found for %s at %s", self.url_w_subdir, self.cache_path_json
)
if context.use_index_cache or (
context.offline and not self.url_w_subdir.startswith("file://")
):
log.debug(
"Using cached data for %s at %s forced. Returning empty repodata.",
self.url_w_subdir,
self.cache_path_json,
)
return {
"_package_records": (),
"_package_dists": (),
"_names_index": defaultdict(list),
"_track_features_index": defaultdict(list),
}
else:
mod_etag_headers = {}
else:
mod_etag_headers = read_mod_and_etag(self.cache_path_json)
if context.use_index_cache:
log.debug(
"Using cached repodata for %s at %s because use_cache=True",
self.url_w_subdir,
self.cache_path_json,
)
_internal_state = self._read_local_repdata(
mod_etag_headers.get("_etag"), mod_etag_headers.get("_mod")
)
return _internal_state
if context.local_repodata_ttl > 1:
max_age = context.local_repodata_ttl
elif context.local_repodata_ttl == 1:
max_age = get_cache_control_max_age(
mod_etag_headers.get("_cache_control", "")
)
else:
max_age = 0
timeout = mtime + max_age - time()
if (timeout > 0 or context.offline) and not self.url_w_subdir.startswith(
"file://"
):
log.debug(
"Using cached repodata for %s at %s. Timeout in %d sec",
self.url_w_subdir,
self.cache_path_json,
timeout,
)
_internal_state = self._read_local_repdata(
mod_etag_headers.get("_etag"), mod_etag_headers.get("_mod")
)
return _internal_state
log.debug(
"Local cache timed out for %s at %s",
self.url_w_subdir,
self.cache_path_json,
)
try:
raw_repodata_str = fetch_repodata_remote_request(
self.url_w_credentials,
mod_etag_headers.get("_etag"),
mod_etag_headers.get("_mod"),
)
except Response304ContentUnchanged:
log.debug(
"304 NOT MODIFIED for '%s'. Updating mtime and loading from disk",
self.url_w_subdir,
)
touch(self.cache_path_json)
_internal_state = self._read_local_repdata(
mod_etag_headers.get("_etag"), mod_etag_headers.get("_mod")
)
return _internal_state
else:
if not isdir(dirname(self.cache_path_json)):
mkdir_p(dirname(self.cache_path_json))
try:
with open(self.cache_path_json, "w") as fh:
fh.write(raw_repodata_str or "{}")
except (IOError, OSError) as e:
if e.errno in (EACCES, EPERM):
raise NotWritableError(self.cache_path_json, e.errno, caused_by=e)
else:
raise
_internal_state = self._process_raw_repodata_str(raw_repodata_str)
self._internal_state = _internal_state
self._pickle_me()
return _internal_state
|
def _load(self):
try:
mtime = getmtime(self.cache_path_json)
except (IOError, OSError):
log.debug(
"No local cache found for %s at %s", self.url_w_subdir, self.cache_path_json
)
if context.use_index_cache or (
context.offline and not self.url_w_subdir.startswith("file://")
):
log.debug(
"Using cached data for %s at %s forced. Returning empty repodata.",
self.url_w_subdir,
self.cache_path_json,
)
return {
"_package_records": (),
"_package_dists": (),
"_names_index": defaultdict(list),
"_track_features_index": defaultdict(list),
}
else:
mod_etag_headers = {}
else:
mod_etag_headers = read_mod_and_etag(self.cache_path_json)
if context.use_index_cache:
log.debug(
"Using cached repodata for %s at %s because use_cache=True",
self.url_w_subdir,
self.cache_path_json,
)
_internal_state = self._read_local_repdata(
mod_etag_headers.get("_etag"), mod_etag_headers.get("_mod")
)
return _internal_state
if context.local_repodata_ttl > 1:
max_age = context.local_repodata_ttl
elif context.local_repodata_ttl == 1:
max_age = get_cache_control_max_age(
mod_etag_headers.get("_cache_control", "")
)
else:
max_age = 0
timeout = mtime + max_age - time()
if (timeout > 0 or context.offline) and not self.url_w_subdir.startswith(
"file://"
):
log.debug(
"Using cached repodata for %s at %s. Timeout in %d sec",
self.url_w_subdir,
self.cache_path_json,
timeout,
)
_internal_state = self._read_local_repdata(
mod_etag_headers.get("_etag"), mod_etag_headers.get("_mod")
)
return _internal_state
log.debug(
"Local cache timed out for %s at %s",
self.url_w_subdir,
self.cache_path_json,
)
try:
raw_repodata_str = fetch_repodata_remote_request(
self.url_w_credentials,
mod_etag_headers.get("_etag"),
mod_etag_headers.get("_mod"),
)
except Response304ContentUnchanged:
log.debug(
"304 NOT MODIFIED for '%s'. Updating mtime and loading from disk",
self.url_w_subdir,
)
touch(self.cache_path_json)
_internal_state = self._read_local_repdata(
mod_etag_headers.get("_etag"), mod_etag_headers.get("_mod")
)
return _internal_state
else:
if not isdir(dirname(self.cache_path_json)):
mkdir_p(dirname(self.cache_path_json))
with open(self.cache_path_json, "w") as fh:
fh.write(raw_repodata_str or "{}")
_internal_state = self._process_raw_repodata_str(raw_repodata_str)
self._internal_state = _internal_state
self._pickle_me()
return _internal_state
|
https://github.com/conda/conda/issues/6572
|
error: PermissionError(13, 'Permission denied')
command: /Users/apple/.conda/envs/cafe/bin/conda uninstall protobuf
user_agent: conda/4.4.3 requests/2.18.4 CPython/3.6.1 Darwin/16.1.0 OSX/10.12.1
_messageid: -9223372036845375609
_messagetime: 1514148478933 / 2017-12-24 14:47:58
_receipttime: 1514148478933 / 2017-12-24 14:47:58
Traceback (most recent call last):
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/exceptions.py", line 722, in __call__
return func(*args, **kwargs)
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/cli/main_remove.py", line 82, in execute
txn = solver.solve_for_transaction(force_remove=args.force)
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/core/solve.py", line 501, in solve_for_transaction
force_remove, force_reinstall)
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/core/solve.py", line 434, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/core/solve.py", line 178, in solve_final_state
index, r = self._prepare(prepared_specs)
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/core/solve.py", line 557, in _prepare
self.subdirs, prepared_specs)
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 214, in get_reduced_index
new_records = query_all(spec)
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/core/index.py", line 187, in query_all
return tuple(concat(future.result() for future in as_completed(futures)))
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/core/repodata.py", line 99, in query
self.load()
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/core/repodata.py", line 143, in load
_internal_state = self._load()
File "/Users/apple/miniconda3/lib/python3.6/site-packages/conda/core/repodata.py", line 222, in _load
with open(self.cache_path_json, 'w') as fh:
PermissionError: [Errno 13] Permission denied: '/Users/apple/miniconda3/pkgs/cache/809318c1.json'
|
PermissionError
|
def get_egg_info_files(sp_dir):
for fn in isdir(sp_dir) and os.listdir(sp_dir) or ():
if fn.endswith(".egg-link"):
with open(join(sp_dir, fn), "r") as reader:
for egg in get_egg_info_files(reader.readline().strip()):
yield egg
if not fn.endswith((".egg", ".egg-info", ".dist-info")):
continue
path = join(sp_dir, fn)
if isfile(path):
yield path
elif isdir(path):
for path2 in [
join(path, "PKG-INFO"),
join(path, "EGG-INFO", "PKG-INFO"),
join(path, "METADATA"),
]:
if isfile(path2):
yield path2
|
def get_egg_info_files(sp_dir):
for fn in os.listdir(sp_dir):
if fn.endswith(".egg-link"):
with open(join(sp_dir, fn), "r") as reader:
for egg in get_egg_info_files(reader.readline().strip()):
yield egg
if not fn.endswith((".egg", ".egg-info", ".dist-info")):
continue
path = join(sp_dir, fn)
if isfile(path):
yield path
elif isdir(path):
for path2 in [
join(path, "PKG-INFO"),
join(path, "EGG-INFO", "PKG-INFO"),
join(path, "METADATA"),
]:
if isfile(path2):
yield path2
|
https://github.com/conda/conda/issues/6557
|
"command": "/Users/hideki/anaconda/bin/conda list"
"user_agent": "conda/4.4.3 requests/2.14.2 CPython/3.5.2 Darwin/16.7.0 OSX/10.12.6"
Traceback (most recent call last):
File \"/Users/hideki/anaconda/lib/python3.5/site-packages/conda/exceptions.py\", line 722, in __call__
return func(*args, **kwargs)
File \"/Users/hideki/anaconda/lib/python3.5/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/Users/hideki/anaconda/lib/python3.5/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/Users/hideki/anaconda/lib/python3.5/site-packages/conda/cli/main_list.py\", line 150, in execute
show_channel_urls=context.show_channel_urls)
File \"/Users/hideki/anaconda/lib/python3.5/site-packages/conda/cli/main_list.py\", line 85, in print_packages
other_python = get_egg_info(prefix)
File \"/Users/hideki/anaconda/lib/python3.5/site-packages/conda/egg_info.py\", line 86, in get_egg_info
for path in get_egg_info_files(join(prefix, sp_dir)):
File \"/Users/hideki/anaconda/lib/python3.5/site-packages/conda/egg_info.py\", line 35, in get_egg_info_files
for egg in get_egg_info_files(reader.readline().strip()):
File \"/Users/hideki/anaconda/lib/python3.5/site-packages/conda/egg_info.py\", line 32, in get_egg_info_files
for fn in os.listdir(sp_dir):
FileNotFoundError: [Errno 2] No such file or directory: '/Users/hideki/darkflow'
|
FileNotFoundError
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/repodata_record.json doesn't exists
# JsonDecodeError if info/repodata_record.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because %r",
join(extracted_package_dir, "info", "repodata_record.json"),
e,
)
# try reading info/index.json
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/index.json doesn't exist
# JsonDecodeError if info/index.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because",
join(extracted_package_dir, "info", "index.json"),
e,
)
if isdir(extracted_package_dir) and not isfile(package_tarball_full_path):
# We have a directory that looks like a conda package, but without
# (1) info/repodata_record.json or info/index.json, and (2) a conda package
# tarball, there's not much we can do. We'll just ignore it.
return None
try:
if self.is_writable:
if isdir(extracted_package_dir):
# We have a partially unpacked conda package directory. Best thing
# to do is remove it and try extracting.
rm_rf(extracted_package_dir)
extract_tarball(package_tarball_full_path, extracted_package_dir)
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError):
# At this point, we can assume the package tarball is bad.
# Remove everything and move on.
rm_rf(package_tarball_full_path)
rm_rf(extracted_package_dir)
return None
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError) as e:
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
# We have a corrupted tarball. Remove the tarball so it doesn't affect
# anything, and move on.
log.debug(
"unable to extract info/index.json from %s\n because %r",
package_tarball_full_path,
e,
)
rm_rf(package_tarball_full_path)
return None
# we were able to read info/index.json, so let's continue
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
# write the info/repodata_record.json file so we can short-circuit this next time
if self.is_writable:
repodata_record = PackageRecord.from_objects(package_cache_record)
repodata_record_path = join(
extracted_package_dir, "info", "repodata_record.json"
)
try:
write_as_json_to_file(repodata_record_path, repodata_record)
except (IOError, OSError) as e:
if e.errno in (EACCES, EPERM) and isdir(dirname(repodata_record_path)):
raise NotWritableError(repodata_record_path, e.errno, caused_by=e)
else:
raise
return package_cache_record
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/repodata_record.json doesn't exists
# JsonDecodeError if info/repodata_record.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because %r",
join(extracted_package_dir, "info", "repodata_record.json"),
e,
)
# try reading info/index.json
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/index.json doesn't exist
# JsonDecodeError if info/index.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because",
join(extracted_package_dir, "info", "index.json"),
e,
)
if isdir(extracted_package_dir) and not isfile(package_tarball_full_path):
# We have a directory that looks like a conda package, but without
# (1) info/repodata_record.json or info/index.json, and (2) a conda package
# tarball, there's not much we can do. We'll just ignore it.
return None
try:
if self.is_writable:
if isdir(extracted_package_dir):
# We have a partially unpacked conda package directory. Best thing
# to do is remove it and try extracting.
rm_rf(extracted_package_dir)
extract_tarball(package_tarball_full_path, extracted_package_dir)
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError):
# At this point, we can assume the package tarball is bad.
# Remove everything and move on.
rm_rf(package_tarball_full_path)
rm_rf(extracted_package_dir)
return None
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError) as e:
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
# We have a corrupted tarball. Remove the tarball so it doesn't affect
# anything, and move on.
log.debug(
"unable to extract info/index.json from %s\n because %r",
package_tarball_full_path,
e,
)
rm_rf(package_tarball_full_path)
return None
# we were able to read info/index.json, so let's continue
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
# write the info/repodata_record.json file so we can short-circuit this next time
if self.is_writable:
repodata_record = PackageRecord.from_objects(package_cache_record)
repodata_record_path = join(
extracted_package_dir, "info", "repodata_record.json"
)
write_as_json_to_file(repodata_record_path, repodata_record)
return package_cache_record
|
https://github.com/conda/conda/issues/6562
|
error: PermissionError(13, 'Permission denied')
command: /home/jing/anaconda3/bin/conda upgrade Requests
user_agent: conda/4.4.3 requests/2.18.4 CPython/3.6.1 Linux/4.13.0-21-generic ubuntu/17.10 glibc/2.26
_messageid: -9223372036845975622
_messagetime: 1513948198000 / 2017-12-22 07:09:58
_receipttime: 1513993708752 / 2017-12-22 19:48:28
Traceback (most recent call last):
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 268, in _make_single_record
repodata_record = read_repodata_json(extracted_package_dir)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 123, in read_repodata_json
with open(join(extracted_package_directory, 'info', 'repodata_record.json')) as fi:
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/common/compat.py", line 120, in open
closefd=closefd)
FileNotFoundError: [Errno 2] No such file or directory: '/home/jing/anaconda3/pkgs/conda-4.3.31-py36_0/info/repodata_record.json'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 722, in __call__
return func(*args, **kwargs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/main_update.py", line 14, in execute
install(args, parser, 'update')
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 239, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 256, in handle_txn
unlink_link_transaction.display_actions(progressive_fetch_extract)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 706, in display_actions
legacy_action_groups = self.make_legacy_action_groups(pfe)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 689, in make_legacy_action_groups
pfe.prepare()
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 415, in decorated
return f(*args, **kwds)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 525, in prepare
for prec in self.link_precs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 525, in <genexpr>
for prec in self.link_precs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 419, in make_actions_for_record
), None)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 416, in <genexpr>
pcrec for pcrec in concat(PackageCache(pkgs_dir).query(pref_or_spec)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 417, in <genexpr>
for pkgs_dir in context.pkgs_dirs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 116, in query
return (pcrec for pcrec in itervalues(self._package_cache_records) if pcrec == param)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 209, in _package_cache_records
self.load()
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 88, in load
package_cache_record = self._make_single_record(base_name)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 339, in _make_single_record
write_as_json_to_file(repodata_record_path, repodata_record)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/gateways/disk/create.py", line 61, in write_as_json_to_file
with open(file_path, str('wb')) as fo:
PermissionError: [Errno 13] Permission denied: '/home/jing/anaconda3/pkgs/conda-4.3.31-py36_0/info/repodata_record.json'
|
FileNotFoundError
|
def __init__(self, path, errno, **kwargs):
kwargs.update(
{
"path": path,
"errno": errno,
}
)
if on_win:
message = dals("""
The current user does not have write permissions to a required path.
path: %(path)s
""")
else:
message = dals("""
The current user does not have write permissions to a required path.
path: %(path)s
uid: %(uid)s
gid: %(gid)s
If you feel that permissions on this path are set incorrectly, you can manually
change them by executing
$ sudo chown %(uid)s:%(gid)s %(path)s
In general, it's not advisable to use 'sudo conda'.
""")
import os
kwargs.update(
{
"uid": os.geteuid(),
"gid": os.getegid(),
}
)
super(NotWritableError, self).__init__(message, **kwargs)
|
def __init__(self, path, errno, **kwargs):
kwargs.update(
{
"path": path,
"errno": errno,
}
)
if on_win:
message = dals("""
The current user does not have write permissions to a required path.
path: %(path)s
""")
else:
message = dals("""
The current user does not have write permissions to a required path.
path: %(path)s
uid: %(uid)s
gid: %(gid)s
If you feel that permissions on this path are set incorrectly, you can manually
change them by executing
$ sudo chown %(uid)s:%(gid)s %(path)s
""")
import os
kwargs.update(
{
"uid": os.geteuid(),
"gid": os.getegid(),
}
)
super(NotWritableError, self).__init__(message, **kwargs)
|
https://github.com/conda/conda/issues/6562
|
error: PermissionError(13, 'Permission denied')
command: /home/jing/anaconda3/bin/conda upgrade Requests
user_agent: conda/4.4.3 requests/2.18.4 CPython/3.6.1 Linux/4.13.0-21-generic ubuntu/17.10 glibc/2.26
_messageid: -9223372036845975622
_messagetime: 1513948198000 / 2017-12-22 07:09:58
_receipttime: 1513993708752 / 2017-12-22 19:48:28
Traceback (most recent call last):
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 268, in _make_single_record
repodata_record = read_repodata_json(extracted_package_dir)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 123, in read_repodata_json
with open(join(extracted_package_directory, 'info', 'repodata_record.json')) as fi:
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/common/compat.py", line 120, in open
closefd=closefd)
FileNotFoundError: [Errno 2] No such file or directory: '/home/jing/anaconda3/pkgs/conda-4.3.31-py36_0/info/repodata_record.json'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 722, in __call__
return func(*args, **kwargs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/main_update.py", line 14, in execute
install(args, parser, 'update')
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 239, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 256, in handle_txn
unlink_link_transaction.display_actions(progressive_fetch_extract)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 706, in display_actions
legacy_action_groups = self.make_legacy_action_groups(pfe)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 689, in make_legacy_action_groups
pfe.prepare()
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 415, in decorated
return f(*args, **kwds)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 525, in prepare
for prec in self.link_precs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 525, in <genexpr>
for prec in self.link_precs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 419, in make_actions_for_record
), None)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 416, in <genexpr>
pcrec for pcrec in concat(PackageCache(pkgs_dir).query(pref_or_spec)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 417, in <genexpr>
for pkgs_dir in context.pkgs_dirs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 116, in query
return (pcrec for pcrec in itervalues(self._package_cache_records) if pcrec == param)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 209, in _package_cache_records
self.load()
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 88, in load
package_cache_record = self._make_single_record(base_name)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 339, in _make_single_record
write_as_json_to_file(repodata_record_path, repodata_record)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/gateways/disk/create.py", line 61, in write_as_json_to_file
with open(file_path, str('wb')) as fo:
PermissionError: [Errno 13] Permission denied: '/home/jing/anaconda3/pkgs/conda-4.3.31-py36_0/info/repodata_record.json'
|
FileNotFoundError
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/repodata_record.json doesn't exists
# JsonDecodeError if info/repodata_record.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because %r",
join(extracted_package_dir, "info", "repodata_record.json"),
e,
)
# try reading info/index.json
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/index.json doesn't exist
# JsonDecodeError if info/index.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because",
join(extracted_package_dir, "info", "index.json"),
e,
)
if isdir(extracted_package_dir) and not isfile(package_tarball_full_path):
# We have a directory that looks like a conda package, but without
# (1) info/repodata_record.json or info/index.json, and (2) a conda package
# tarball, there's not much we can do. We'll just ignore it.
return None
try:
if self.is_writable:
if isdir(extracted_package_dir):
# We have a partially unpacked conda package directory. Best thing
# to do is remove it and try extracting.
rm_rf(extracted_package_dir)
extract_tarball(package_tarball_full_path, extracted_package_dir)
index_json_record = read_index_json(extracted_package_dir)
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError) as e:
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
# We have a corrupted tarball. Remove the tarball so it doesn't affect
# anything, and move on.
log.debug(
"unable to extract info/index.json from %s\n because %r",
package_tarball_full_path,
e,
)
rm_rf(package_tarball_full_path)
return None
# we were able to read info/index.json, so let's continue
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
# write the info/repodata_record.json file so we can short-circuit this next time
if self.is_writable:
repodata_record = PackageRecord.from_objects(package_cache_record)
repodata_record_path = join(
extracted_package_dir, "info", "repodata_record.json"
)
try:
write_as_json_to_file(repodata_record_path, repodata_record)
except (IOError, OSError) as e:
if e.errno in (EACCES, EPERM) and isdir(dirname(repodata_record_path)):
raise NotWritableError(repodata_record_path, e.errno, caused_by=e)
else:
raise
return package_cache_record
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/repodata_record.json doesn't exists
# JsonDecodeError if info/repodata_record.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because %r",
join(extracted_package_dir, "info", "repodata_record.json"),
e,
)
# try reading info/index.json
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/index.json doesn't exist
# JsonDecodeError if info/index.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because",
join(extracted_package_dir, "info", "index.json"),
e,
)
if isdir(extracted_package_dir) and not isfile(package_tarball_full_path):
# We have a directory that looks like a conda package, but without
# (1) info/repodata_record.json or info/index.json, and (2) a conda package
# tarball, there's not much we can do. We'll just ignore it.
return None
try:
if self.is_writable:
if isdir(extracted_package_dir):
# We have a partially unpacked conda package directory. Best thing
# to do is remove it and try extracting.
rm_rf(extracted_package_dir)
extract_tarball(package_tarball_full_path, extracted_package_dir)
index_json_record = read_index_json(extracted_package_dir)
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError) as e:
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
# We have a corrupted tarball. Remove the tarball so it doesn't affect
# anything, and move on.
log.debug(
"unable to extract info/index.json from %s\n because %r",
package_tarball_full_path,
e,
)
rm_rf(package_tarball_full_path)
return None
# we were able to read info/index.json, so let's continue
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
# write the info/repodata_record.json file so we can short-circuit this next time
if self.is_writable:
repodata_record = PackageRecord.from_objects(package_cache_record)
repodata_record_path = join(
extracted_package_dir, "info", "repodata_record.json"
)
write_as_json_to_file(repodata_record_path, repodata_record)
return package_cache_record
|
https://github.com/conda/conda/issues/6562
|
error: PermissionError(13, 'Permission denied')
command: /home/jing/anaconda3/bin/conda upgrade Requests
user_agent: conda/4.4.3 requests/2.18.4 CPython/3.6.1 Linux/4.13.0-21-generic ubuntu/17.10 glibc/2.26
_messageid: -9223372036845975622
_messagetime: 1513948198000 / 2017-12-22 07:09:58
_receipttime: 1513993708752 / 2017-12-22 19:48:28
Traceback (most recent call last):
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 268, in _make_single_record
repodata_record = read_repodata_json(extracted_package_dir)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 123, in read_repodata_json
with open(join(extracted_package_directory, 'info', 'repodata_record.json')) as fi:
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/common/compat.py", line 120, in open
closefd=closefd)
FileNotFoundError: [Errno 2] No such file or directory: '/home/jing/anaconda3/pkgs/conda-4.3.31-py36_0/info/repodata_record.json'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 722, in __call__
return func(*args, **kwargs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/main_update.py", line 14, in execute
install(args, parser, 'update')
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 239, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/cli/install.py", line 256, in handle_txn
unlink_link_transaction.display_actions(progressive_fetch_extract)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 706, in display_actions
legacy_action_groups = self.make_legacy_action_groups(pfe)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 689, in make_legacy_action_groups
pfe.prepare()
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/common/io.py", line 415, in decorated
return f(*args, **kwds)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 525, in prepare
for prec in self.link_precs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 525, in <genexpr>
for prec in self.link_precs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 419, in make_actions_for_record
), None)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 416, in <genexpr>
pcrec for pcrec in concat(PackageCache(pkgs_dir).query(pref_or_spec)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 417, in <genexpr>
for pkgs_dir in context.pkgs_dirs)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 116, in query
return (pcrec for pcrec in itervalues(self._package_cache_records) if pcrec == param)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 209, in _package_cache_records
self.load()
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 88, in load
package_cache_record = self._make_single_record(base_name)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 339, in _make_single_record
write_as_json_to_file(repodata_record_path, repodata_record)
File "/home/jing/anaconda3/lib/python3.6/site-packages/conda/gateways/disk/create.py", line 61, in write_as_json_to_file
with open(file_path, str('wb')) as fo:
PermissionError: [Errno 13] Permission denied: '/home/jing/anaconda3/pkgs/conda-4.3.31-py36_0/info/repodata_record.json'
|
FileNotFoundError
|
def from_yaml(yamlstr, **kwargs):
"""Load and return a ``Environment`` from a given ``yaml string``"""
data = yaml_load_standard(yamlstr)
if kwargs is not None:
for key, value in kwargs.items():
data[key] = value
return Environment(**data)
|
def from_yaml(yamlstr, **kwargs):
"""Load and return a ``Environment`` from a given ``yaml string``"""
data = yaml_load(yamlstr)
if kwargs is not None:
for key, value in kwargs.items():
data[key] = value
return Environment(**data)
|
https://github.com/conda/conda/issues/6529
|
Traceback (most recent call last):
File "[conda_dir]/lib/python2.7/site-packages/conda/exceptions.py", line 722, in __call__
return func(*args, **kwargs)
File "[conda_dir]/lib/python2.7/site-packages/conda_env/cli/main.py", line 74, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "[conda_dir]/lib/python2.7/site-packages/conda_env/cli/main_create.py", line 79, in execute
directory=os.getcwd())
File "[conda_dir]/lib/python2.7/site-packages/conda_env/specs/__init__.py", line 20, in detect
if spec.can_handle():
File "[conda_dir]/lib/python2.7/site-packages/conda_env/specs/yaml_file.py", line 14, in can_handle
self._environment = env.from_file(self.filename)
File "[conda_dir]/lib/python2.7/site-packages/conda_env/env.py", line 84, in from_file
return from_yaml(yamlstr, filename=filename)
File "[conda_dir]/lib/python2.7/site-packages/conda_env/env.py", line 72, in from_yaml
data = yaml_load(yamlstr)
File "[conda_dir]/lib/python2.7/site-packages/conda/common/serialize.py", line 54, in yaml_load
return yaml.load(string, Loader=yaml.RoundTripLoader, version="1.2")
File "[conda_dir]/lib/python2.7/site-packages/ruamel_yaml/main.py", line 75, in load
return loader.get_single_data()
File "[conda_dir]/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 62, in get_single_data
return self.construct_document(node)
File "[conda_dir]/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 71, in construct_document
for dummy in generator:
File "[conda_dir]/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 1049, in construct_yaml_map
self.construct_mapping(node, data)
File "[conda_dir]/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 978, in construct_mapping
value = self.construct_object(value_node, deep=deep)
File "[conda_dir]/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 120, in construct_object
data = next(generator)
File "[conda_dir]/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 1115, in construct_undefined
node.start_mark)
ConstructorError: could not determine a constructor for the tag '!!python/unicode'
in "<byte string>", line 191, column 9:
prefix: !!python/unicode '/home/pair/dev ...
^
environment variables:
CIO_TEST=<not set>
CONDA_ROOT=[conda_dir]
MODULEPATH=/etc/scl/modulefiles:/etc/scl/modulefiles:/etc/scl/modulefiles:/usr/sh
are/Modules/modulefiles:/etc/modulefiles:/usr/share/modulefiles
PATH=/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/home/pair/.local/bi
n:/home/pair/bin:/home/pair/.local/bin:/home/pair/bin
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
TERMINATOR_DBUS_PATH=/net/tenshu/Terminator2
WINDOWPATH=2
active environment : None
user config file : /home/pair/.condarc
populated config files :
conda version : 4.4.2
conda-build version : not installed
python version : 2.7.14.final.0
base environment : [conda_dir] (writable)
channel URLs : https://repo.continuum.io/pkgs/main/linux-64
https://repo.continuum.io/pkgs/main/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
package cache : [conda_dir]/pkgs
/home/pair/.conda/pkgs
envs directories : [conda_dir]/envs
/home/pair/.conda/envs
platform : linux-64
user-agent : conda/4.4.2 requests/2.18.4 CPython/2.7.14 Linux/4.13.16-100.fc25.x86_64 fedora/25 glibc/2.24
UID:GID : 1000:1000
netrc file : None
offline mode : False
|
ConstructorError
|
def register_env(location):
location = normpath(location)
if "placehold_pl" in location:
# Don't record envs created by conda-build.
return
if location in yield_lines(USER_ENVIRONMENTS_TXT_FILE):
# Nothing to do. Location is already recorded in a known environments.txt file.
return
with open(USER_ENVIRONMENTS_TXT_FILE, "a") as fh:
fh.write(ensure_text_type(location))
fh.write("\n")
|
def register_env(location):
location = normpath(location)
if "placehold_pl" in location:
# Don't record envs created by conda-build.
return
if location in yield_lines(USER_ENVIRONMENTS_TXT_FILE):
# Nothing to do. Location is already recorded in a known environments.txt file.
return
with open(USER_ENVIRONMENTS_TXT_FILE, "a") as fh:
fh.write(location)
fh.write("\n")
|
https://github.com/conda/conda/issues/6541
|
Traceback (most recent call last):
File "/Users/kfranz/continuum/conda/conda/core/link.py", line 535, in _execute_actions
action.execute()
File "/Users/kfranz/continuum/conda/conda/core/path_actions.py", line 876, in execute
register_env(self.target_prefix)
File "/Users/kfranz/continuum/conda/conda/core/envs_manager.py", line 28, in register_env
if location in yield_lines(USER_ENVIRONMENTS_TXT_FILE):
File "/Users/kfranz/continuum/conda/conda/gateways/disk/read.py", line 49, in yield_lines
if not line or line.startswith('#'):
UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3 in position 54: ordinal not in range(128)
|
UnicodeDecodeError
|
def spinner(message=None, enabled=True, json=False):
"""
Args:
message (str, optional):
An optional message to prefix the spinner with.
If given, ': ' are automatically added.
enabled (bool):
If False, usage is a no-op.
json (bool):
If True, will not output non-json to stdout.
"""
sp = Spinner(enabled)
exception_raised = False
try:
if message:
if json:
pass
else:
sys.stdout.write("%s: " % message)
sys.stdout.flush()
if not json:
sp.start()
yield
except:
exception_raised = True
raise
finally:
if not json:
sp.stop()
if message:
if json:
pass
else:
try:
if exception_raised:
sys.stdout.write("failed\n")
else:
sys.stdout.write("done\n")
sys.stdout.flush()
except (IOError, OSError) as e:
# Ignore BrokenPipeError and errors related to stdout or stderr being
# closed by a downstream program.
if e.errno not in (EPIPE, ESHUTDOWN):
raise
|
def spinner(message=None, enabled=True, json=False):
"""
Args:
message (str, optional):
An optional message to prefix the spinner with.
If given, ': ' are automatically added.
enabled (bool):
If False, usage is a no-op.
json (bool):
If True, will not output non-json to stdout.
"""
sp = Spinner(enabled)
exception_raised = False
try:
if message:
if json:
pass
else:
sys.stdout.write("%s: " % message)
sys.stdout.flush()
if not json:
sp.start()
yield
except:
exception_raised = True
raise
finally:
if not json:
sp.stop()
if message:
if json:
pass
else:
if exception_raised:
sys.stdout.write("failed\n")
else:
sys.stdout.write("done\n")
sys.stdout.flush()
|
https://github.com/conda/conda/issues/6538
|
Traceback (most recent call last):
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/exceptions.py\", line 722, in __call__
return func(*args, **kwargs)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/main_create.py\", line 11, in execute
install(args, parser, 'create')
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/install.py\", line 239, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/install.py\", line 265, in handle_txn
progressive_fetch_extract.execute()
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py\", line 543, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py\", line 595, in _execute_actions
progress_bar.close()
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/common/io.py\", line 376, in close
self.pbar.close()
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py\", line 1054, in close
self.bar_format, self.postfix, self.unit_divisor))
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py\", line 201, in print_status
fp_write('\\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py\", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def close(self):
try:
if self.json:
sys.stdout.write(
'{"fetch":"%s","finished":true,"maxval":1,"progress":1}\n\0'
% self.description
)
sys.stdout.flush()
elif self.enabled:
self.pbar.close()
except (IOError, OSError) as e:
# Ignore BrokenPipeError and errors related to stdout or stderr being
# closed by a downstream program.
if e.errno not in (EPIPE, ESHUTDOWN):
raise
self.enabled = False
|
def close(self):
if self.json:
sys.stdout.write(
'{"fetch":"%s","finished":true,"maxval":1,"progress":1}\n\0'
% self.description
)
sys.stdout.flush()
elif self.enabled:
self.pbar.close()
self.enabled = False
|
https://github.com/conda/conda/issues/6538
|
Traceback (most recent call last):
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/exceptions.py\", line 722, in __call__
return func(*args, **kwargs)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/main_create.py\", line 11, in execute
install(args, parser, 'create')
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/install.py\", line 239, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/cli/install.py\", line 265, in handle_txn
progressive_fetch_extract.execute()
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py\", line 543, in execute
exc = self._execute_actions(prec_or_spec, prec_actions)
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py\", line 595, in _execute_actions
progress_bar.close()
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/common/io.py\", line 376, in close
self.pbar.close()
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py\", line 1054, in close
self.bar_format, self.postfix, self.unit_divisor))
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py\", line 201, in print_status
fp_write('\\r' + s + (' ' * max(last_len[0] - len_s, 0)))
File \"/home/jon/anaconda3/lib/python3.6/site-packages/conda/_vendor/tqdm/_tqdm.py\", line 195, in fp_write
fp_flush()
BrokenPipeError: [Errno 32] Broken pipe
|
BrokenPipeError
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/repodata_record.json doesn't exists
# JsonDecodeError if info/repodata_record.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because %r",
join(extracted_package_dir, "info", "repodata_record.json"),
e,
)
# try reading info/index.json
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError, JSONDecodeError) as e:
# IOError / OSError if info/index.json doesn't exist
# JsonDecodeError if info/index.json is partially extracted or corrupted
# python 2.7 raises ValueError instead of JsonDecodeError
# ValueError("No JSON object could be decoded")
log.debug(
"unable to read %s\n because",
join(extracted_package_dir, "info", "index.json"),
e,
)
if isdir(extracted_package_dir) and not isfile(package_tarball_full_path):
# We have a directory that looks like a conda package, but without
# (1) info/repodata_record.json or info/index.json, and (2) a conda package
# tarball, there's not much we can do. We'll just ignore it.
return None
try:
if self.is_writable:
if isdir(extracted_package_dir):
# We have a partially unpacked conda package directory. Best thing
# to do is remove it and try extracting.
rm_rf(extracted_package_dir)
extract_tarball(package_tarball_full_path, extracted_package_dir)
index_json_record = read_index_json(extracted_package_dir)
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError) as e:
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
# We have a corrupted tarball. Remove the tarball so it doesn't affect
# anything, and move on.
log.debug(
"unable to extract info/index.json from %s\n because %r",
package_tarball_full_path,
e,
)
rm_rf(package_tarball_full_path)
return None
# we were able to read info/index.json, so let's continue
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
# write the info/repodata_record.json file so we can short-circuit this next time
if self.is_writable:
repodata_record = PackageRecord.from_objects(package_cache_record)
repodata_record_path = join(
extracted_package_dir, "info", "repodata_record.json"
)
write_as_json_to_file(repodata_record_path, repodata_record)
return package_cache_record
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
except (IOError, OSError):
# no info/repodata_record.json exists
# try reading info/index.json
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError):
# info/index.json doesn't exist either
if isdir(extracted_package_dir) and not isfile(package_tarball_full_path):
# We have a directory that looks like a conda package, but without
# (1) info/repodata_record.json or info/index.json, and (2) a conda package
# tarball, there's not much we can do. We'll just ignore it.
return None
try:
if self.is_writable:
if isdir(extracted_package_dir):
# We have a partially unpacked conda package directory. Best thing
# to do is remove it and try extracting.
rm_rf(extracted_package_dir)
extract_tarball(package_tarball_full_path, extracted_package_dir)
index_json_record = read_index_json(extracted_package_dir)
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError):
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
rm_rf(package_tarball_full_path)
return None
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
# write the info/repodata_record.json file so we can short-circuit this next time
if self.is_writable:
repodata_record = PackageRecord.from_objects(package_cache_record)
repodata_record_path = join(
extracted_package_dir, "info", "repodata_record.json"
)
write_as_json_to_file(repodata_record_path, repodata_record)
return package_cache_record
|
https://github.com/conda/conda/issues/6530
|
Traceback (most recent call last):
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 722, in __call__
return func(*args, **kwargs)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 239, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 256, in handle_txn
unlink_link_transaction.display_actions(progressive_fetch_extract)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/link.py", line 706, in display_actions
legacy_action_groups = self.make_legacy_action_groups(pfe)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/link.py", line 689, in make_legacy_action_groups
pfe.prepare()
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/common/io.py", line 402, in decorated
return f(*args, **kwds)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/package_cache.py", line 508, in prepare
for prec in self.link_precs)
File "/home/pablo/anaconda/lib/python2.7/_abcoll.py", line 571, in update
for key, value in other:
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/package_cache.py", line 508, in <genexpr>
for prec in self.link_precs)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/package_cache.py", line 402, in make_actions_for_record
), None)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/package_cache.py", line 399, in <genexpr>
pcrec for pcrec in concat(PackageCache(pkgs_dir).query(pref_or_spec)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/package_cache.py", line 400, in <genexpr>
for pkgs_dir in context.pkgs_dirs)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/package_cache.py", line 116, in query
return (pcrec for pcrec in itervalues(self._package_cache_records) if pcrec == param)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/package_cache.py", line 209, in _package_cache_records
self.load()
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/package_cache.py", line 88, in load
package_cache_record = self._make_single_record(base_name)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/core/package_cache.py", line 279, in _make_single_record
index_json_record = read_index_json(extracted_package_dir)
File "/home/pablo/anaconda/lib/python2.7/site-packages/conda/gateways/disk/read.py", line 112, in read_index_json
record = IndexJsonRecord(**json.load(fi))
File "/home/pablo/anaconda/lib/python2.7/json/__init__.py", line 291, in load
**kw)
File "/home/pablo/anaconda/lib/python2.7/json/__init__.py", line 339, in loads
return _default_decoder.decode(s)
File "/home/pablo/anaconda/lib/python2.7/json/decoder.py", line 364, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/home/pablo/anaconda/lib/python2.7/json/decoder.py", line 382, in raw_decode
raise ValueError("No JSON object could be decoded")
ValueError: No JSON object could be decoded
|
ValueError
|
def solve_final_state(
self, deps_modifier=NULL, prune=NULL, ignore_pinned=NULL, force_remove=NULL
):
"""Gives the final, solved state of the environment.
Args:
deps_modifier (DepsModifier):
An optional flag indicating special solver handling for dependencies. The
default solver behavior is to be as conservative as possible with dependency
updates (in the case the dependency already exists in the environment), while
still ensuring all dependencies are satisfied. Options include
* NO_DEPS
* ONLY_DEPS
* UPDATE_DEPS
* UPDATE_DEPS_ONLY_DEPS
prune (bool):
If ``True``, the solution will not contain packages that were
previously brought into the environment as dependencies but are no longer
required as dependencies and are not user-requested.
ignore_pinned (bool):
If ``True``, the solution will ignore pinned package configuration
for the prefix.
force_remove (bool):
Forces removal of a package without removing packages that depend on it.
Returns:
Tuple[PackageRef]:
In sorted dependency order from roots to leaves, the package references for
the solved state of the environment.
"""
prune = context.prune if prune is NULL else prune
ignore_pinned = context.ignore_pinned if ignore_pinned is NULL else ignore_pinned
deps_modifier = context.deps_modifier if deps_modifier is NULL else deps_modifier
if isinstance(deps_modifier, string_types):
deps_modifier = DepsModifier(deps_modifier.lower())
specs_to_remove = self.specs_to_remove
specs_to_add = self.specs_to_add
# force_remove is a special case where we return early
if specs_to_remove and force_remove:
if specs_to_add:
raise NotImplementedError()
index, r = self._prepare(specs_to_remove)
solution = tuple(
Dist(rec)
for rec in PrefixData(self.prefix).iter_records()
if not any(spec.match(rec) for spec in specs_to_remove)
)
return IndexedSet(
index[d] for d in r.dependency_sort({d.name: d for d in solution})
)
log.debug(
"solving prefix %s\n specs_to_remove: %s\n specs_to_add: %s\n prune: %s",
self.prefix,
specs_to_remove,
specs_to_add,
prune,
)
# declare starting point, the initial state of the environment
# `solution` and `specs_map` are mutated throughout this method
prefix_data = PrefixData(self.prefix)
solution = tuple(Dist(d) for d in prefix_data.iter_records())
specs_from_history_map = History(self.prefix).get_requested_specs_map()
if prune or deps_modifier == DepsModifier.UPDATE_ALL:
# Start with empty specs map for UPDATE_ALL because we're optimizing the update
# only for specs the user has requested; it's ok to remove dependencies.
specs_map = odict()
# However, because of https://github.com/conda/constructor/issues/138, we need
# to hard-code keeping conda, conda-build, and anaconda, if they're already in
# the environment.
solution_pkg_names = set(d.name for d in solution)
ensure_these = (
pkg_name
for pkg_name in {
"anaconda",
"conda",
"conda-build",
}
if pkg_name not in specs_from_history_map and pkg_name in solution_pkg_names
)
for pkg_name in ensure_these:
specs_from_history_map[pkg_name] = MatchSpec(pkg_name)
else:
specs_map = odict((d.name, MatchSpec(d.name)) for d in solution)
# add in historically-requested specs
specs_map.update(specs_from_history_map)
# let's pretend for now that this is the right place to build the index
prepared_specs = set(
concatv(
specs_to_remove,
specs_to_add,
itervalues(specs_from_history_map),
)
)
index, r = self._prepare(prepared_specs)
if specs_to_remove:
# In a previous implementation, we invoked SAT here via `r.remove()` to help with
# spec removal, and then later invoking SAT again via `r.solve()`. Rather than invoking
# SAT for spec removal determination, we can use the DAG and simple tree traversal
# if we're careful about how we handle features. We still invoke sat via `r.solve()`
# later.
_track_fts_specs = (
spec for spec in specs_to_remove if "track_features" in spec
)
feature_names = set(
concat(spec.get_raw_value("track_features") for spec in _track_fts_specs)
)
dag = PrefixDag((index[dist] for dist in solution), itervalues(specs_map))
removed_records = []
for spec in specs_to_remove:
# If the spec was a provides_features spec, then we need to also remove every
# package with a requires_feature that matches the provides_feature. The
# `dag.remove_spec()` method handles that for us.
log.trace("using dag to remove records for %s", spec)
removed_records.extend(dag.remove_spec(spec))
for rec in removed_records:
# We keep specs (minus the feature part) for the non provides_features packages
# if they're in the history specs. Otherwise, we pop them from the specs_map.
rec_has_a_feature = set(rec.features or ()) & feature_names
if rec_has_a_feature and rec.name in specs_from_history_map:
spec = specs_map.get(rec.name, MatchSpec(rec.name))
spec._match_components.pop("features", None)
specs_map[spec.name] = spec
else:
specs_map.pop(rec.name, None)
solution = tuple(Dist(rec) for rec in dag.records)
if not removed_records and not prune:
raise PackagesNotFoundError(tuple(spec.name for spec in specs_to_remove))
# We handle as best as possible environments in inconsistent states. To do this,
# we remove now from consideration the set of packages causing inconsistencies,
# and then we add them back in following the main SAT call.
_, inconsistent_dists = r.bad_installed(solution, ())
add_back_map = {} # name: (dist, spec)
if log.isEnabledFor(DEBUG):
log.debug(
"inconsistent dists: %s",
dashlist(inconsistent_dists) if inconsistent_dists else "None",
)
if inconsistent_dists:
for dist in inconsistent_dists:
# pop and save matching spec in specs_map
add_back_map[dist.name] = (dist, specs_map.pop(dist.name, None))
solution = tuple(dist for dist in solution if dist not in inconsistent_dists)
# For the remaining specs in specs_map, add target to each spec. `target` is a reference
# to the package currently existing in the environment. Setting target instructs the
# solver to not disturb that package if it's not necessary.
# If the spec.name is being modified by inclusion in specs_to_add, we don't set `target`,
# since we *want* the solver to modify/update that package.
#
# TLDR: when working with MatchSpec objects,
# - to minimize the version change, set MatchSpec(name=name, target=dist.full_name)
# - to freeze the package, set all the components of MatchSpec individually
for pkg_name, spec in iteritems(specs_map):
matches_for_spec = tuple(dist for dist in solution if spec.match(index[dist]))
if matches_for_spec:
if len(matches_for_spec) != 1:
raise CondaError(
dals("""
Conda encountered an error with your environment. Please report an issue
at https://github.com/conda/conda/issues/new. In your report, please include
the output of 'conda info' and 'conda list' for the active environment, along
with the command you invoked that resulted in this error.
matches_for_spec: %s
""")
% dashlist((text_type(s) for s in matches_for_spec), indent=4)
)
target_dist = matches_for_spec[0]
if deps_modifier == DepsModifier.FREEZE_INSTALLED:
new_spec = MatchSpec(index[target_dist])
else:
target = Dist(target_dist).full_name
new_spec = MatchSpec(spec, target=target)
specs_map[pkg_name] = new_spec
if log.isEnabledFor(TRACE):
log.trace("specs_map with targets: %s", specs_map)
# If we're in UPDATE_ALL mode, we need to drop all the constraints attached to specs,
# so they can all float and the solver can find the most up-to-date solution. In the case
# of UPDATE_ALL, `specs_map` wasn't initialized with packages from the current environment,
# but *only* historically-requested specs. This lets UPDATE_ALL drop dependencies if
# they're no longer needed, and their presence would otherwise prevent the updated solution
# the user most likely wants.
if deps_modifier == DepsModifier.UPDATE_ALL:
specs_map = {
pkg_name: MatchSpec(spec.name, optional=spec.optional)
for pkg_name, spec in iteritems(specs_map)
}
# The anaconda spec is a special case here, because of the 'custom' version.
# Because of https://github.com/conda/conda/issues/6350, and until we implement
# something like https://github.com/ContinuumIO/anaconda-issues/issues/4298, I think
# this is the best we're going to do.
if "anaconda" in specs_map:
specs_map["anaconda"] = MatchSpec("anaconda>1")
# As a business rule, we never want to update python beyond the current minor version,
# unless that's requested explicitly by the user (which we actively discourage).
if "python" in specs_map:
python_prefix_rec = prefix_data.get("python")
if python_prefix_rec:
python_spec = specs_map["python"]
if not python_spec.get("version"):
pinned_version = (
get_major_minor_version(python_prefix_rec.version) + ".*"
)
specs_map["python"] = MatchSpec(python_spec, version=pinned_version)
# For the aggressive_update_packages configuration parameter, we strip any target
# that's been set.
if not context.offline:
for spec in context.aggressive_update_packages:
if spec.name in specs_map:
old_spec = specs_map[spec.name]
specs_map[spec.name] = MatchSpec(old_spec, target=None)
if (
context.auto_update_conda
and paths_equal(self.prefix, context.root_prefix)
and any(dist.name == "conda" for dist in solution)
):
specs_map["conda"] = MatchSpec("conda")
# add in explicitly requested specs from specs_to_add
# this overrides any name-matching spec already in the spec map
specs_map.update((s.name, s) for s in specs_to_add)
# collect additional specs to add to the solution
track_features_specs = pinned_specs = ()
if context.track_features:
track_features_specs = tuple(MatchSpec(x + "@") for x in context.track_features)
if not ignore_pinned:
pinned_specs = get_pinned_specs(self.prefix)
final_environment_specs = IndexedSet(
concatv(
itervalues(specs_map),
track_features_specs,
pinned_specs,
)
)
# We've previously checked `solution` for consistency (which at that point was the
# pre-solve state of the environment). Now we check our compiled set of
# `final_environment_specs` for the possibility of a solution. If there are conflicts,
# we can often avoid them by neutering specs that have a target (e.g. removing version
# constraint) and also making them optional. The result here will be less cases of
# `UnsatisfiableError` handed to users, at the cost of more packages being modified
# or removed from the environment.
conflicting_specs = r.get_conflicting_specs(tuple(final_environment_specs))
if log.isEnabledFor(DEBUG):
log.debug("conflicting specs: %s", dashlist(conflicting_specs))
for spec in conflicting_specs:
if spec.target:
final_environment_specs.remove(spec)
neutered_spec = MatchSpec(spec.name, target=spec.target, optional=True)
final_environment_specs.add(neutered_spec)
# Finally! We get to call SAT.
if log.isEnabledFor(DEBUG):
log.debug(
"final specs to add: %s",
dashlist(sorted(text_type(s) for s in final_environment_specs)),
)
solution = r.solve(tuple(final_environment_specs)) # return value is List[dist]
# add back inconsistent packages to solution
if add_back_map:
for name, (dist, spec) in iteritems(add_back_map):
if not any(d.name == name for d in solution):
solution.append(dist)
if spec:
final_environment_specs.add(spec)
# Special case handling for various DepsModifer flags. Maybe this block could be pulled
# out into its own non-public helper method?
if deps_modifier == DepsModifier.NO_DEPS:
# In the NO_DEPS case, we need to start with the original list of packages in the
# environment, and then only modify packages that match specs_to_add or
# specs_to_remove.
_no_deps_solution = IndexedSet(Dist(rec) for rec in prefix_data.iter_records())
only_remove_these = set(
dist
for spec in specs_to_remove
for dist in _no_deps_solution
if spec.match(index[dist])
)
_no_deps_solution -= only_remove_these
only_add_these = set(
dist
for spec in specs_to_add
for dist in solution
if spec.match(index[dist])
)
remove_before_adding_back = set(dist.name for dist in only_add_these)
_no_deps_solution = IndexedSet(
dist
for dist in _no_deps_solution
if dist.name not in remove_before_adding_back
)
_no_deps_solution |= only_add_these
solution = _no_deps_solution
elif deps_modifier == DepsModifier.ONLY_DEPS:
# Using a special instance of the DAG to remove leaf nodes that match the original
# specs_to_add. It's important to only remove leaf nodes, because a typical use
# might be `conda install --only-deps python=2 flask`, and in that case we'd want
# to keep python.
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
elif deps_modifier in (
DepsModifier.UPDATE_DEPS,
DepsModifier.UPDATE_DEPS_ONLY_DEPS,
):
# Here we have to SAT solve again :( It's only now that we know the dependency
# chain of specs_to_add.
specs_to_add_names = set(spec.name for spec in specs_to_add)
update_names = set()
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
for spec in specs_to_add:
node = dag.get_node_by_name(spec.name)
for ascendant in node.all_ascendants():
ascendant_name = ascendant.record.name
if ascendant_name not in specs_to_add_names:
update_names.add(ascendant_name)
grouped_specs = groupby(
lambda s: s.name in update_names, final_environment_specs
)
new_final_environment_specs = set(grouped_specs[False])
update_specs = set(
MatchSpec(spec.name, optional=spec.optional) for spec in grouped_specs[True]
)
final_environment_specs = new_final_environment_specs | update_specs
solution = r.solve(final_environment_specs)
if deps_modifier == DepsModifier.UPDATE_DEPS_ONLY_DEPS:
# duplicated from DepsModifier.ONLY_DEPS
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
if prune:
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
dag.prune()
solution = tuple(Dist(rec) for rec in dag.records)
self._check_solution(solution, pinned_specs)
solution = IndexedSet(r.dependency_sort({d.name: d for d in solution}))
log.debug(
"solved prefix %s\n solved_linked_dists:\n %s\n",
self.prefix,
"\n ".join(text_type(d) for d in solution),
)
return IndexedSet(index[d] for d in solution)
|
def solve_final_state(
self, deps_modifier=NULL, prune=NULL, ignore_pinned=NULL, force_remove=NULL
):
"""Gives the final, solved state of the environment.
Args:
deps_modifier (DepsModifier):
An optional flag indicating special solver handling for dependencies. The
default solver behavior is to be as conservative as possible with dependency
updates (in the case the dependency already exists in the environment), while
still ensuring all dependencies are satisfied. Options include
* NO_DEPS
* ONLY_DEPS
* UPDATE_DEPS
* UPDATE_DEPS_ONLY_DEPS
prune (bool):
If ``True``, the solution will not contain packages that were
previously brought into the environment as dependencies but are no longer
required as dependencies and are not user-requested.
ignore_pinned (bool):
If ``True``, the solution will ignore pinned package configuration
for the prefix.
force_remove (bool):
Forces removal of a package without removing packages that depend on it.
Returns:
Tuple[PackageRef]:
In sorted dependency order from roots to leaves, the package references for
the solved state of the environment.
"""
prune = context.prune if prune is NULL else prune
ignore_pinned = context.ignore_pinned if ignore_pinned is NULL else ignore_pinned
deps_modifier = context.deps_modifier if deps_modifier is NULL else deps_modifier
if isinstance(deps_modifier, string_types):
deps_modifier = DepsModifier(deps_modifier.lower())
specs_to_remove = self.specs_to_remove
specs_to_add = self.specs_to_add
# force_remove is a special case where we return early
if specs_to_remove and force_remove:
if specs_to_add:
raise NotImplementedError()
index, r = self._prepare(specs_to_remove)
solution = tuple(
Dist(rec)
for rec in PrefixData(self.prefix).iter_records()
if not any(spec.match(rec) for spec in specs_to_remove)
)
return IndexedSet(
index[d] for d in r.dependency_sort({d.name: d for d in solution})
)
log.debug(
"solving prefix %s\n specs_to_remove: %s\n specs_to_add: %s\n prune: %s",
self.prefix,
specs_to_remove,
specs_to_add,
prune,
)
# declare starting point, the initial state of the environment
# `solution` and `specs_map` are mutated throughout this method
prefix_data = PrefixData(self.prefix)
solution = tuple(Dist(d) for d in prefix_data.iter_records())
specs_from_history_map = History(self.prefix).get_requested_specs_map()
if prune or deps_modifier == DepsModifier.UPDATE_ALL:
# Start with empty specs map for UPDATE_ALL because we're optimizing the update
# only for specs the user has requested; it's ok to remove dependencies.
specs_map = odict()
# However, because of https://github.com/conda/constructor/issues/138, we need
# to hard-code keeping conda, conda-build, and anaconda, if they're already in
# the environment.
solution_pkg_names = set(d.name for d in solution)
ensure_these = (
pkg_name
for pkg_name in {
"anaconda",
"conda",
"conda-build",
}
if pkg_name not in specs_from_history_map and pkg_name in solution_pkg_names
)
for pkg_name in ensure_these:
specs_from_history_map[pkg_name] = MatchSpec(pkg_name)
else:
specs_map = odict((d.name, MatchSpec(d.name)) for d in solution)
# add in historically-requested specs
specs_map.update(specs_from_history_map)
# let's pretend for now that this is the right place to build the index
prepared_specs = set(
concatv(
specs_to_remove,
specs_to_add,
itervalues(specs_from_history_map),
)
)
index, r = self._prepare(prepared_specs)
if specs_to_remove:
# In a previous implementation, we invoked SAT here via `r.remove()` to help with
# spec removal, and then later invoking SAT again via `r.solve()`. Rather than invoking
# SAT for spec removal determination, we can use the DAG and simple tree traversal
# if we're careful about how we handle features. We still invoke sat via `r.solve()`
# later.
_track_fts_specs = (
spec for spec in specs_to_remove if "track_features" in spec
)
feature_names = set(
concat(spec.get_raw_value("track_features") for spec in _track_fts_specs)
)
dag = PrefixDag((index[dist] for dist in solution), itervalues(specs_map))
removed_records = []
for spec in specs_to_remove:
# If the spec was a provides_features spec, then we need to also remove every
# package with a requires_feature that matches the provides_feature. The
# `dag.remove_spec()` method handles that for us.
log.trace("using dag to remove records for %s", spec)
removed_records.extend(dag.remove_spec(spec))
for rec in removed_records:
# We keep specs (minus the feature part) for the non provides_features packages
# if they're in the history specs. Otherwise, we pop them from the specs_map.
rec_has_a_feature = set(rec.features or ()) & feature_names
if rec_has_a_feature and rec.name in specs_from_history_map:
spec = specs_map.get(rec.name, MatchSpec(rec.name))
spec._match_components.pop("features", None)
specs_map[spec.name] = spec
else:
specs_map.pop(rec.name, None)
solution = tuple(Dist(rec) for rec in dag.records)
if not removed_records and not prune:
raise PackagesNotFoundError(tuple(spec.name for spec in specs_to_remove))
# We handle as best as possible environments in inconsistent states. To do this,
# we remove now from consideration the set of packages causing inconsistencies,
# and then we add them back in following the main SAT call.
_, inconsistent_dists = r.bad_installed(solution, ())
add_back_map = {} # name: (dist, spec)
if log.isEnabledFor(DEBUG):
log.debug(
"inconsistent dists: %s",
dashlist(inconsistent_dists) if inconsistent_dists else "None",
)
if inconsistent_dists:
for dist in inconsistent_dists:
# pop and save matching spec in specs_map
add_back_map[dist.name] = (dist, specs_map.pop(dist.name, None))
solution = tuple(dist for dist in solution if dist not in inconsistent_dists)
# For the remaining specs in specs_map, add target to each spec. `target` is a reference
# to the package currently existing in the environment. Setting target instructs the
# solver to not disturb that package if it's not necessary.
# If the spec.name is being modified by inclusion in specs_to_add, we don't set `target`,
# since we *want* the solver to modify/update that package.
#
# TLDR: when working with MatchSpec objects,
# - to minimize the version change, set MatchSpec(name=name, target=dist.full_name)
# - to freeze the package, set all the components of MatchSpec individually
for pkg_name, spec in iteritems(specs_map):
matches_for_spec = tuple(dist for dist in solution if spec.match(index[dist]))
if matches_for_spec:
if len(matches_for_spec) != 1:
raise CondaError(
dals("""
Conda encountered an error with your environment. Please report an issue
at https://github.com/conda/conda/issues/new. In your report, please include
the output of 'conda info' and 'conda list' for the active environment, along
with the command you invoked that resulted in this error.
matches_for_spec: %s
""")
% matches_for_spec
)
target_dist = matches_for_spec[0]
if deps_modifier == DepsModifier.FREEZE_INSTALLED:
new_spec = MatchSpec(index[target_dist])
else:
target = Dist(target_dist).full_name
new_spec = MatchSpec(spec, target=target)
specs_map[pkg_name] = new_spec
if log.isEnabledFor(TRACE):
log.trace("specs_map with targets: %s", specs_map)
# If we're in UPDATE_ALL mode, we need to drop all the constraints attached to specs,
# so they can all float and the solver can find the most up-to-date solution. In the case
# of UPDATE_ALL, `specs_map` wasn't initialized with packages from the current environment,
# but *only* historically-requested specs. This lets UPDATE_ALL drop dependencies if
# they're no longer needed, and their presence would otherwise prevent the updated solution
# the user most likely wants.
if deps_modifier == DepsModifier.UPDATE_ALL:
specs_map = {
pkg_name: MatchSpec(spec.name, optional=spec.optional)
for pkg_name, spec in iteritems(specs_map)
}
# The anaconda spec is a special case here, because of the 'custom' version.
# Because of https://github.com/conda/conda/issues/6350, and until we implement
# something like https://github.com/ContinuumIO/anaconda-issues/issues/4298, I think
# this is the best we're going to do.
if "anaconda" in specs_map:
specs_map["anaconda"] = MatchSpec("anaconda>1")
# As a business rule, we never want to update python beyond the current minor version,
# unless that's requested explicitly by the user (which we actively discourage).
if "python" in specs_map:
python_prefix_rec = prefix_data.get("python")
if python_prefix_rec:
python_spec = specs_map["python"]
if not python_spec.get("version"):
pinned_version = (
get_major_minor_version(python_prefix_rec.version) + ".*"
)
specs_map["python"] = MatchSpec(python_spec, version=pinned_version)
# For the aggressive_update_packages configuration parameter, we strip any target
# that's been set.
if not context.offline:
for spec in context.aggressive_update_packages:
if spec.name in specs_map:
old_spec = specs_map[spec.name]
specs_map[spec.name] = MatchSpec(old_spec, target=None)
if (
context.auto_update_conda
and paths_equal(self.prefix, context.root_prefix)
and any(dist.name == "conda" for dist in solution)
):
specs_map["conda"] = MatchSpec("conda")
# add in explicitly requested specs from specs_to_add
# this overrides any name-matching spec already in the spec map
specs_map.update((s.name, s) for s in specs_to_add)
# collect additional specs to add to the solution
track_features_specs = pinned_specs = ()
if context.track_features:
track_features_specs = tuple(MatchSpec(x + "@") for x in context.track_features)
if not ignore_pinned:
pinned_specs = get_pinned_specs(self.prefix)
final_environment_specs = IndexedSet(
concatv(
itervalues(specs_map),
track_features_specs,
pinned_specs,
)
)
# We've previously checked `solution` for consistency (which at that point was the
# pre-solve state of the environment). Now we check our compiled set of
# `final_environment_specs` for the possibility of a solution. If there are conflicts,
# we can often avoid them by neutering specs that have a target (e.g. removing version
# constraint) and also making them optional. The result here will be less cases of
# `UnsatisfiableError` handed to users, at the cost of more packages being modified
# or removed from the environment.
conflicting_specs = r.get_conflicting_specs(tuple(final_environment_specs))
if log.isEnabledFor(DEBUG):
log.debug("conflicting specs: %s", dashlist(conflicting_specs))
for spec in conflicting_specs:
if spec.target:
final_environment_specs.remove(spec)
neutered_spec = MatchSpec(spec.name, target=spec.target, optional=True)
final_environment_specs.add(neutered_spec)
# Finally! We get to call SAT.
if log.isEnabledFor(DEBUG):
log.debug(
"final specs to add: %s",
dashlist(sorted(text_type(s) for s in final_environment_specs)),
)
solution = r.solve(tuple(final_environment_specs)) # return value is List[dist]
# add back inconsistent packages to solution
if add_back_map:
for name, (dist, spec) in iteritems(add_back_map):
if not any(d.name == name for d in solution):
solution.append(dist)
if spec:
final_environment_specs.add(spec)
# Special case handling for various DepsModifer flags. Maybe this block could be pulled
# out into its own non-public helper method?
if deps_modifier == DepsModifier.NO_DEPS:
# In the NO_DEPS case, we need to start with the original list of packages in the
# environment, and then only modify packages that match specs_to_add or
# specs_to_remove.
_no_deps_solution = IndexedSet(Dist(rec) for rec in prefix_data.iter_records())
only_remove_these = set(
dist
for spec in specs_to_remove
for dist in _no_deps_solution
if spec.match(index[dist])
)
_no_deps_solution -= only_remove_these
only_add_these = set(
dist
for spec in specs_to_add
for dist in solution
if spec.match(index[dist])
)
remove_before_adding_back = set(dist.name for dist in only_add_these)
_no_deps_solution = IndexedSet(
dist
for dist in _no_deps_solution
if dist.name not in remove_before_adding_back
)
_no_deps_solution |= only_add_these
solution = _no_deps_solution
elif deps_modifier == DepsModifier.ONLY_DEPS:
# Using a special instance of the DAG to remove leaf nodes that match the original
# specs_to_add. It's important to only remove leaf nodes, because a typical use
# might be `conda install --only-deps python=2 flask`, and in that case we'd want
# to keep python.
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
elif deps_modifier in (
DepsModifier.UPDATE_DEPS,
DepsModifier.UPDATE_DEPS_ONLY_DEPS,
):
# Here we have to SAT solve again :( It's only now that we know the dependency
# chain of specs_to_add.
specs_to_add_names = set(spec.name for spec in specs_to_add)
update_names = set()
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
for spec in specs_to_add:
node = dag.get_node_by_name(spec.name)
for ascendant in node.all_ascendants():
ascendant_name = ascendant.record.name
if ascendant_name not in specs_to_add_names:
update_names.add(ascendant_name)
grouped_specs = groupby(
lambda s: s.name in update_names, final_environment_specs
)
new_final_environment_specs = set(grouped_specs[False])
update_specs = set(
MatchSpec(spec.name, optional=spec.optional) for spec in grouped_specs[True]
)
final_environment_specs = new_final_environment_specs | update_specs
solution = r.solve(final_environment_specs)
if deps_modifier == DepsModifier.UPDATE_DEPS_ONLY_DEPS:
# duplicated from DepsModifier.ONLY_DEPS
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
if prune:
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
dag.prune()
solution = tuple(Dist(rec) for rec in dag.records)
self._check_solution(solution, pinned_specs)
solution = IndexedSet(r.dependency_sort({d.name: d for d in solution}))
log.debug(
"solved prefix %s\n solved_linked_dists:\n %s\n",
self.prefix,
"\n ".join(text_type(d) for d in solution),
)
return IndexedSet(index[d] for d in solution)
|
https://github.com/conda/conda/issues/6522
|
Traceback (most recent call last):
File \"C:\\Users\\court\\Anaconda3\\lib\\site-packages\\conda\\exceptions.py\", line 721, in __call__
return func(*args, **kwargs)
File \"C:\\Users\\court\\Anaconda3\\lib\\site-packages\\conda\\cli\\main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"C:\\Users\\court\\Anaconda3\\lib\\site-packages\\conda\\cli\\conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"C:\\Users\\court\\Anaconda3\\lib\\site-packages\\conda\\cli\\main_install.py\", line 11, in execute
install(args, parser, 'install')
File \"C:\\Users\\court\\Anaconda3\\lib\\site-packages\\conda\\cli\\install.py\", line 220, in install
force_reinstall=context.force,
File \"C:\\Users\\court\\Anaconda3\\lib\\site-packages\\conda\\core\\solve.py\", line 503, in solve_for_transaction
force_remove, force_reinstall)
File \"C:\\Users\\court\\Anaconda3\\lib\\site-packages\\conda\\core\\solve.py\", line 436, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File \"C:\\Users\\court\\Anaconda3\\lib\\site-packages\\conda\\core\\solve.py\", line 244, in solve_final_state
\"\"\") % matches_for_spec)
TypeError: not all arguments converted during string formatting
|
TypeError
|
def _first_writable_envs_dir():
# Starting in conda 4.3, we use the writability test on '..../pkgs/url.txt' to determine
# writability of '..../envs'.
from ..core.package_cache import PackageCache
for envs_dir in context.envs_dirs:
pkgs_dir = join(dirname(envs_dir), "pkgs")
if PackageCache(pkgs_dir).is_writable:
return envs_dir
from ..exceptions import NotWritableError
raise NotWritableError(context.envs_dirs[0], None)
|
def _first_writable_envs_dir():
# Starting in conda 4.3, we use the writability test on '..../pkgs/url.txt' to determine
# writability of '..../envs'.
from ..core.package_cache import PackageCache
for envs_dir in context.envs_dirs:
pkgs_dir = join(dirname(envs_dir), "pkgs")
if PackageCache(pkgs_dir).is_writable:
return envs_dir
from ..exceptions import NotWritableError
raise NotWritableError(context.envs_dirs[0])
|
https://github.com/conda/conda/issues/6508
|
Traceback (most recent call last):
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/exceptions.py\", line 721, in __call__
return func(*args, **kwargs)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/main_install.py\", line 11, in execute
install(args, parser, 'install')
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/install.py\", line 239, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/install.py\", line 269, in handle_txn
unlink_link_transaction.execute()
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 220, in execute
self.verify()
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/common/io.py\", line 402, in decorated
return f(*args, **kwds)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 207, in verify
exceptions = self._verify(self.prefix_setups, self.prefix_action_groups)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 460, in _verify
cls._verify_transaction_level(prefix_setups),
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 455, in <genexpr>
exceptions = tuple(exc for exc in concatv(
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 323, in _verify_individual_level
error_result = axn.verify()
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/path_actions.py\", line 870, in verify
touch(USER_ENVIRONMENTS_TXT_FILE, mkdir=True, sudo_safe=True)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/gateways/disk/update.py\", line 89, in touch
os.chown(path, uid, gid)
PermissionError: [Errno 1] Operation not permitted: '/home/nbcommon/.conda/environments.txt'
|
PermissionError
|
def __init__(self, path, errno, **kwargs):
kwargs.update(
{
"path": path,
"errno": errno,
}
)
if on_win:
message = dals("""
The current user does not have write permissions to a required path.
path: %(path)s
""")
else:
message = dals("""
The current user does not have write permissions to a required path.
path: %(path)s
uid: %(uid)s
gid: %(gid)s
If you feel that permissions on this path are set incorrectly, you can manually
change them by executing
$ sudo chmod %(uid)s:%(gid)s %(path)s
""")
import os
kwargs.update(
{
"uid": os.geteuid(),
"gid": os.getegid(),
}
)
super(NotWritableError, self).__init__(message, **kwargs)
|
def __init__(self, path):
kwargs = {
"path": path,
}
if on_win:
message = dals("""
The current user does not have write permissions to a required path.
path: %(path)s
""")
else:
message = dals("""
The current user does not have write permissions to a required path.
path: %(path)s
uid: %(uid)s
gid: %(gid)s
If you feel that permissions on this path are set incorrectly, you can manually
change them by executing
$ sudo chmod %(uid)s:%(gid)s %(path)s
""")
import os
kwargs.update(
{
"uid": os.geteuid(),
"gid": os.getegid(),
}
)
super(NotWritableError, self).__init__(message, **kwargs)
|
https://github.com/conda/conda/issues/6508
|
Traceback (most recent call last):
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/exceptions.py\", line 721, in __call__
return func(*args, **kwargs)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/main_install.py\", line 11, in execute
install(args, parser, 'install')
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/install.py\", line 239, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/install.py\", line 269, in handle_txn
unlink_link_transaction.execute()
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 220, in execute
self.verify()
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/common/io.py\", line 402, in decorated
return f(*args, **kwds)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 207, in verify
exceptions = self._verify(self.prefix_setups, self.prefix_action_groups)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 460, in _verify
cls._verify_transaction_level(prefix_setups),
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 455, in <genexpr>
exceptions = tuple(exc for exc in concatv(
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 323, in _verify_individual_level
error_result = axn.verify()
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/path_actions.py\", line 870, in verify
touch(USER_ENVIRONMENTS_TXT_FILE, mkdir=True, sudo_safe=True)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/gateways/disk/update.py\", line 89, in touch
os.chown(path, uid, gid)
PermissionError: [Errno 1] Operation not permitted: '/home/nbcommon/.conda/environments.txt'
|
PermissionError
|
def touch(path, mkdir=False, sudo_safe=False):
# sudo_safe: use any time `path` is within the user's home directory
# returns:
# True if the file did not exist but was created
# False if the file already existed
# raises: permissions errors such as EPERM and EACCES
try:
path = expand(path)
log.trace("touching path %s", path)
if lexists(path):
utime(path, None)
return True
else:
dirpath = dirname(path)
if not isdir(dirpath) and mkdir:
if sudo_safe:
mkdir_p_sudo_safe(dirpath)
else:
mkdir_p(dirpath)
else:
assert isdir(dirname(path))
try:
fh = open(path, "a")
except:
raise
else:
fh.close()
if sudo_safe and not on_win and os.environ.get("SUDO_UID") is not None:
uid = int(os.environ["SUDO_UID"])
gid = int(os.environ.get("SUDO_GID", -1))
log.trace("chowning %s:%s %s", uid, gid, path)
os.chown(path, uid, gid)
return False
except (IOError, OSError) as e:
raise NotWritableError(path, e.errno, caused_by=e)
|
def touch(path, mkdir=False, sudo_safe=False):
# sudo_safe: use any time `path` is within the user's home directory
# returns:
# True if the file did not exist but was created
# False if the file already existed
# raises: permissions errors such as EPERM and EACCES
path = expand(path)
log.trace("touching path %s", path)
if lexists(path):
utime(path, None)
return True
else:
dirpath = dirname(path)
if not isdir(dirpath) and mkdir:
if sudo_safe:
mkdir_p_sudo_safe(dirpath)
else:
mkdir_p(dirpath)
else:
assert isdir(dirname(path))
try:
fh = open(path, "a")
except:
raise
else:
fh.close()
if sudo_safe and not on_win and os.environ.get("SUDO_UID") is not None:
uid = int(os.environ["SUDO_UID"])
gid = int(os.environ.get("SUDO_GID", -1))
log.trace("chowning %s:%s %s", uid, gid, path)
os.chown(path, uid, gid)
return False
|
https://github.com/conda/conda/issues/6508
|
Traceback (most recent call last):
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/exceptions.py\", line 721, in __call__
return func(*args, **kwargs)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/main_install.py\", line 11, in execute
install(args, parser, 'install')
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/install.py\", line 239, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/cli/install.py\", line 269, in handle_txn
unlink_link_transaction.execute()
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 220, in execute
self.verify()
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/common/io.py\", line 402, in decorated
return f(*args, **kwds)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 207, in verify
exceptions = self._verify(self.prefix_setups, self.prefix_action_groups)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 460, in _verify
cls._verify_transaction_level(prefix_setups),
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 455, in <genexpr>
exceptions = tuple(exc for exc in concatv(
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/link.py\", line 323, in _verify_individual_level
error_result = axn.verify()
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/core/path_actions.py\", line 870, in verify
touch(USER_ENVIRONMENTS_TXT_FILE, mkdir=True, sudo_safe=True)
File \"/home/nbcommon/anaconda3_420/lib/python3.5/site-packages/conda/gateways/disk/update.py\", line 89, in touch
os.chown(path, uid, gid)
PermissionError: [Errno 1] Operation not permitted: '/home/nbcommon/.conda/environments.txt'
|
PermissionError
|
def solve_final_state(
self, deps_modifier=NULL, prune=NULL, ignore_pinned=NULL, force_remove=NULL
):
"""Gives the final, solved state of the environment.
Args:
deps_modifier (DepsModifier):
An optional flag indicating special solver handling for dependencies. The
default solver behavior is to be as conservative as possible with dependency
updates (in the case the dependency already exists in the environment), while
still ensuring all dependencies are satisfied. Options include
* NO_DEPS
* ONLY_DEPS
* UPDATE_DEPS
* UPDATE_DEPS_ONLY_DEPS
prune (bool):
If ``True``, the solution will not contain packages that were
previously brought into the environment as dependencies but are no longer
required as dependencies and are not user-requested.
ignore_pinned (bool):
If ``True``, the solution will ignore pinned package configuration
for the prefix.
force_remove (bool):
Forces removal of a package without removing packages that depend on it.
Returns:
Tuple[PackageRef]:
In sorted dependency order from roots to leaves, the package references for
the solved state of the environment.
"""
prune = context.prune if prune is NULL else prune
ignore_pinned = context.ignore_pinned if ignore_pinned is NULL else ignore_pinned
deps_modifier = context.deps_modifier if deps_modifier is NULL else deps_modifier
if isinstance(deps_modifier, string_types):
deps_modifier = DepsModifier(deps_modifier.lower())
specs_to_remove = self.specs_to_remove
specs_to_add = self.specs_to_add
# force_remove is a special case where we return early
if specs_to_remove and force_remove:
if specs_to_add:
raise NotImplementedError()
index, r = self._prepare(specs_to_remove)
solution = tuple(
Dist(rec)
for rec in PrefixData(self.prefix).iter_records()
if not any(spec.match(rec) for spec in specs_to_remove)
)
return IndexedSet(
index[d] for d in r.dependency_sort({d.name: d for d in solution})
)
log.debug(
"solving prefix %s\n specs_to_remove: %s\n specs_to_add: %s\n prune: %s",
self.prefix,
specs_to_remove,
specs_to_add,
prune,
)
# declare starting point, the initial state of the environment
# `solution` and `specs_map` are mutated throughout this method
prefix_data = PrefixData(self.prefix)
solution = tuple(Dist(d) for d in prefix_data.iter_records())
if prune or deps_modifier == DepsModifier.UPDATE_ALL:
# start with empty specs map for UPDATE_ALL because we're optimizing the update
# only for specs the user has requested; it's ok to remove dependencies
specs_map = odict()
else:
specs_map = odict((d.name, MatchSpec(d.name)) for d in solution)
# add in historically-requested specs
specs_from_history_map = History(self.prefix).get_requested_specs_map()
specs_map.update(specs_from_history_map)
# let's pretend for now that this is the right place to build the index
prepared_specs = tuple(
concatv(specs_to_remove, specs_to_add, itervalues(specs_from_history_map))
)
index, r = self._prepare(prepared_specs)
if specs_to_remove:
# In a previous implementation, we invoked SAT here via `r.remove()` to help with
# spec removal, and then later invoking SAT again via `r.solve()`. Rather than invoking
# SAT for spec removal determination, we can use the DAG and simple tree traversal
# if we're careful about how we handle features. We still invoke sat via `r.solve()`
# later.
_track_fts_specs = (
spec for spec in specs_to_remove if "track_features" in spec
)
feature_names = set(
concat(spec.get_raw_value("track_features") for spec in _track_fts_specs)
)
dag = PrefixDag((index[dist] for dist in solution), itervalues(specs_map))
removed_records = []
for spec in specs_to_remove:
# If the spec was a provides_features spec, then we need to also remove every
# package with a requires_feature that matches the provides_feature. The
# `dag.remove_spec()` method handles that for us.
log.trace("using dag to remove records for %s", spec)
removed_records.extend(dag.remove_spec(spec))
for rec in removed_records:
# We keep specs (minus the feature part) for the non provides_features packages
# if they're in the history specs. Otherwise, we pop them from the specs_map.
rec_has_a_feature = set(rec.features or ()) & feature_names
if rec_has_a_feature and rec.name in specs_from_history_map:
spec = specs_map.get(rec.name, MatchSpec(rec.name))
spec._match_components.pop("features", None)
specs_map[spec.name] = spec
else:
specs_map.pop(rec.name, None)
solution = tuple(Dist(rec) for rec in dag.records)
if not removed_records and not prune:
raise PackagesNotFoundError(tuple(spec.name for spec in specs_to_remove))
# We handle as best as possible environments in inconsistent states. To do this,
# we remove now from consideration the set of packages causing inconsistencies,
# and then we add them back in following the main SAT call.
_, inconsistent_dists = r.bad_installed(solution, ())
add_back_map = {} # name: (dist, spec)
if log.isEnabledFor(DEBUG):
log.debug(
"inconsistent dists: %s",
dashlist(inconsistent_dists) if inconsistent_dists else "None",
)
if inconsistent_dists:
for dist in inconsistent_dists:
# pop and save matching spec in specs_map
add_back_map[dist.name] = (dist, specs_map.pop(dist.name, None))
solution = tuple(dist for dist in solution if dist not in inconsistent_dists)
# For the remaining specs in specs_map, add target to each spec. `target` is a reference
# to the package currently existing in the environment. Setting target instructs the
# solver to not disturb that package if it's not necessary.
# If the spec.name is being modified by inclusion in specs_to_add, we don't set `target`,
# since we *want* the solver to modify/update that package.
#
# TLDR: when working with MatchSpec objects,
# - to minimize the version change, set MatchSpec(name=name, target=dist.full_name)
# - to freeze the package, set all the components of MatchSpec individually
for pkg_name, spec in iteritems(specs_map):
matches_for_spec = tuple(dist for dist in solution if spec.match(index[dist]))
if matches_for_spec:
if len(matches_for_spec) != 1:
raise CondaError(
dals("""
Conda encountered an error with your environment. Please report an issue
at https://github.com/conda/conda/issues/new. In your report, please include
the output of 'conda info' and 'conda list' for the active environment, along
with the command you invoked that resulted in this error.
matches_for_spec: %s
""")
% matches_for_spec
)
target_dist = matches_for_spec[0]
if deps_modifier == DepsModifier.FREEZE_INSTALLED:
new_spec = MatchSpec(index[target_dist])
else:
target = Dist(target_dist).full_name
new_spec = MatchSpec(spec, target=target)
specs_map[pkg_name] = new_spec
if log.isEnabledFor(TRACE):
log.trace("specs_map with targets: %s", specs_map)
# If we're in UPDATE_ALL mode, we need to drop all the constraints attached to specs,
# so they can all float and the solver can find the most up-to-date solution. In the case
# of UPDATE_ALL, `specs_map` wasn't initialized with packages from the current environment,
# but *only* historically-requested specs. This lets UPDATE_ALL drop dependencies if
# they're no longer needed, and their presence would otherwise prevent the updated solution
# the user most likely wants.
if deps_modifier == DepsModifier.UPDATE_ALL:
specs_map = {
pkg_name: MatchSpec(spec.name, optional=spec.optional)
for pkg_name, spec in iteritems(specs_map)
}
# As a business rule, we never want to update python beyond the current minor version,
# unless that's requested explicitly by the user (which we actively discourage).
if "python" in specs_map:
python_prefix_rec = prefix_data.get("python")
if python_prefix_rec:
python_spec = specs_map["python"]
if not python_spec.get("version"):
pinned_version = (
get_major_minor_version(python_prefix_rec.version) + ".*"
)
specs_map["python"] = MatchSpec(python_spec, version=pinned_version)
# For the aggressive_update_packages configuration parameter, we strip any target
# that's been set.
if not context.offline:
for spec in context.aggressive_update_packages:
if spec.name in specs_map:
old_spec = specs_map[spec.name]
specs_map[spec.name] = MatchSpec(old_spec, target=None)
if (
context.auto_update_conda
and paths_equal(self.prefix, context.root_prefix)
and any(dist.name == "conda" for dist in solution)
):
specs_map["conda"] = MatchSpec("conda")
# add in explicitly requested specs from specs_to_add
# this overrides any name-matching spec already in the spec map
specs_map.update((s.name, s) for s in specs_to_add)
# collect additional specs to add to the solution
track_features_specs = pinned_specs = ()
if context.track_features:
track_features_specs = tuple(MatchSpec(x + "@") for x in context.track_features)
if not ignore_pinned:
pinned_specs = get_pinned_specs(self.prefix)
final_environment_specs = IndexedSet(
concatv(
itervalues(specs_map),
track_features_specs,
pinned_specs,
)
)
# We've previously checked `solution` for consistency (which at that point was the
# pre-solve state of the environment). Now we check our compiled set of
# `final_environment_specs` for the possibility of a solution. If there are conflicts,
# we can often avoid them by neutering specs that have a target (e.g. removing version
# constraint) and also making them optional. The result here will be less cases of
# `UnsatisfiableError` handed to users, at the cost of more packages being modified
# or removed from the environment.
conflicting_specs = r.get_conflicting_specs(tuple(final_environment_specs))
if log.isEnabledFor(DEBUG):
log.debug("conflicting specs: %s", dashlist(conflicting_specs))
for spec in conflicting_specs:
if spec.target:
final_environment_specs.remove(spec)
neutered_spec = MatchSpec(spec.name, target=spec.target, optional=True)
final_environment_specs.add(neutered_spec)
# Finally! We get to call SAT.
if log.isEnabledFor(DEBUG):
log.debug(
"final specs to add: %s",
dashlist(sorted(text_type(s) for s in final_environment_specs)),
)
pre_solution = solution
solution = r.solve(tuple(final_environment_specs)) # return value is List[dist]
# add back inconsistent packages to solution
if add_back_map:
for name, (dist, spec) in iteritems(add_back_map):
if not any(d.name == name for d in solution):
solution.append(dist)
if spec:
final_environment_specs.add(spec)
# Special case handling for various DepsModifer flags. Maybe this block could be pulled
# out into its own non-public helper method?
if deps_modifier == DepsModifier.NO_DEPS:
# In the NO_DEPS case we're just filtering out packages from the solution.
dont_add_packages = []
new_packages = set(solution) - set(pre_solution)
for dist in new_packages:
if not any(spec.match(index[dist]) for spec in specs_to_add):
dont_add_packages.append(dist)
solution = tuple(rec for rec in solution if rec not in dont_add_packages)
elif deps_modifier == DepsModifier.ONLY_DEPS:
# Using a special instance of the DAG to remove leaf nodes that match the original
# specs_to_add. It's important to only remove leaf nodes, because a typical use
# might be `conda install --only-deps python=2 flask`, and in that case we'd want
# to keep python.
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
elif deps_modifier in (
DepsModifier.UPDATE_DEPS,
DepsModifier.UPDATE_DEPS_ONLY_DEPS,
):
# Here we have to SAT solve again :( It's only now that we know the dependency
# chain of specs_to_add.
specs_to_add_names = set(spec.name for spec in specs_to_add)
update_names = set()
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
for spec in specs_to_add:
node = dag.get_node_by_name(spec.name)
for ascendant in node.all_ascendants():
ascendant_name = ascendant.record.name
if ascendant_name not in specs_to_add_names:
update_names.add(ascendant_name)
grouped_specs = groupby(
lambda s: s.name in update_names, final_environment_specs
)
new_final_environment_specs = set(grouped_specs[False])
update_specs = set(
MatchSpec(spec.name, optional=spec.optional) for spec in grouped_specs[True]
)
final_environment_specs = new_final_environment_specs | update_specs
solution = r.solve(final_environment_specs)
if deps_modifier == DepsModifier.UPDATE_DEPS_ONLY_DEPS:
# duplicated from DepsModifier.ONLY_DEPS
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
if prune:
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
dag.prune()
solution = tuple(Dist(rec) for rec in dag.records)
self._check_solution(solution, pinned_specs)
solution = IndexedSet(r.dependency_sort({d.name: d for d in solution}))
log.debug(
"solved prefix %s\n solved_linked_dists:\n %s\n",
self.prefix,
"\n ".join(text_type(d) for d in solution),
)
return IndexedSet(index[d] for d in solution)
|
def solve_final_state(
self, deps_modifier=NULL, prune=NULL, ignore_pinned=NULL, force_remove=NULL
):
"""Gives the final, solved state of the environment.
Args:
deps_modifier (DepsModifier):
An optional flag indicating special solver handling for dependencies. The
default solver behavior is to be as conservative as possible with dependency
updates (in the case the dependency already exists in the environment), while
still ensuring all dependencies are satisfied. Options include
* NO_DEPS
* ONLY_DEPS
* UPDATE_DEPS
* UPDATE_DEPS_ONLY_DEPS
prune (bool):
If ``True``, the solution will not contain packages that were
previously brought into the environment as dependencies but are no longer
required as dependencies and are not user-requested.
ignore_pinned (bool):
If ``True``, the solution will ignore pinned package configuration
for the prefix.
force_remove (bool):
Forces removal of a package without removing packages that depend on it.
Returns:
Tuple[PackageRef]:
In sorted dependency order from roots to leaves, the package references for
the solved state of the environment.
"""
prune = context.prune if prune is NULL else prune
ignore_pinned = context.ignore_pinned if ignore_pinned is NULL else ignore_pinned
deps_modifier = context.deps_modifier if deps_modifier is NULL else deps_modifier
if isinstance(deps_modifier, string_types):
deps_modifier = DepsModifier(deps_modifier.lower())
specs_to_remove = self.specs_to_remove
specs_to_add = self.specs_to_add
# force_remove is a special case where we return early
if specs_to_remove and force_remove:
if specs_to_add:
raise NotImplementedError()
index, r = self._prepare(specs_to_remove)
solution = tuple(
Dist(rec)
for rec in PrefixData(self.prefix).iter_records()
if not any(spec.match(rec) for spec in specs_to_remove)
)
return IndexedSet(
index[d] for d in r.dependency_sort({d.name: d for d in solution})
)
log.debug(
"solving prefix %s\n specs_to_remove: %s\n specs_to_add: %s\n prune: %s",
self.prefix,
specs_to_remove,
specs_to_add,
prune,
)
# declare starting point, the initial state of the environment
# `solution` and `specs_map` are mutated throughout this method
prefix_data = PrefixData(self.prefix)
solution = tuple(Dist(d) for d in prefix_data.iter_records())
if prune or deps_modifier == DepsModifier.UPDATE_ALL:
# start with empty specs map for UPDATE_ALL because we're optimizing the update
# only for specs the user has requested; it's ok to remove dependencies
specs_map = odict()
else:
specs_map = odict((d.name, MatchSpec(d.name)) for d in solution)
# add in historically-requested specs
specs_from_history_map = History(self.prefix).get_requested_specs_map()
specs_map.update(specs_from_history_map)
# let's pretend for now that this is the right place to build the index
prepared_specs = tuple(
concatv(specs_to_remove, specs_to_add, itervalues(specs_from_history_map))
)
index, r = self._prepare(prepared_specs)
if specs_to_remove:
# In a previous implementation, we invoked SAT here via `r.remove()` to help with
# spec removal, and then later invoking SAT again via `r.solve()`. Rather than invoking
# SAT for spec removal determination, we can use the DAG and simple tree traversal
# if we're careful about how we handle features. We still invoke sat via `r.solve()`
# later.
_track_fts_specs = (
spec for spec in specs_to_remove if "track_features" in spec
)
feature_names = set(
concat(spec.get_raw_value("track_features") for spec in _track_fts_specs)
)
dag = PrefixDag((index[dist] for dist in solution), itervalues(specs_map))
removed_records = []
for spec in specs_to_remove:
# If the spec was a provides_features spec, then we need to also remove every
# package with a requires_feature that matches the provides_feature. The
# `dag.remove_spec()` method handles that for us.
log.trace("using dag to remove records for %s", spec)
removed_records.extend(dag.remove_spec(spec))
for rec in removed_records:
# We keep specs (minus the feature part) for the non provides_features packages
# if they're in the history specs. Otherwise, we pop them from the specs_map.
rec_has_a_feature = set(rec.features or ()) & feature_names
if rec_has_a_feature and rec.name in specs_from_history_map:
spec = specs_map.get(rec.name, MatchSpec(rec.name))
spec._match_components.pop("features", None)
specs_map[spec.name] = spec
else:
specs_map.pop(rec.name, None)
solution = tuple(Dist(rec) for rec in dag.records)
if not removed_records and not prune:
raise PackagesNotFoundError(tuple(spec.name for spec in specs_to_remove))
# We handle as best as possible environments in inconsistent states. To do this,
# we remove now from consideration the set of packages causing inconsistencies,
# and then we add them back in following the main SAT call.
_, inconsistent_dists = r.bad_installed(solution, ())
add_back_map = {} # name: (dist, spec)
if log.isEnabledFor(DEBUG):
log.debug(
"inconsistent dists: %s",
dashlist(inconsistent_dists) if inconsistent_dists else "None",
)
if inconsistent_dists:
for dist in inconsistent_dists:
# pop and save matching spec in specs_map
add_back_map[dist.name] = (dist, specs_map.pop(dist.name, None))
solution = tuple(dist for dist in solution if dist not in inconsistent_dists)
# For the remaining specs in specs_map, add target to each spec. `target` is a reference
# to the package currently existing in the environment. Setting target instructs the
# solver to not disturb that package if it's not necessary.
# If the spec.name is being modified by inclusion in specs_to_add, we don't set `target`,
# since we *want* the solver to modify/update that package.
#
# TLDR: when working with MatchSpec objects,
# - to minimize the version change, set MatchSpec(name=name, target=dist.full_name)
# - to freeze the package, set all the components of MatchSpec individually
for pkg_name, spec in iteritems(specs_map):
matches_for_spec = tuple(dist for dist in solution if spec.match(index[dist]))
if matches_for_spec:
assert len(matches_for_spec) == 1
target_dist = matches_for_spec[0]
if deps_modifier == DepsModifier.FREEZE_INSTALLED:
new_spec = MatchSpec(index[target_dist])
else:
target = Dist(target_dist).full_name
new_spec = MatchSpec(spec, target=target)
specs_map[pkg_name] = new_spec
if log.isEnabledFor(TRACE):
log.trace("specs_map with targets: %s", specs_map)
# If we're in UPDATE_ALL mode, we need to drop all the constraints attached to specs,
# so they can all float and the solver can find the most up-to-date solution. In the case
# of UPDATE_ALL, `specs_map` wasn't initialized with packages from the current environment,
# but *only* historically-requested specs. This lets UPDATE_ALL drop dependencies if
# they're no longer needed, and their presence would otherwise prevent the updated solution
# the user most likely wants.
if deps_modifier == DepsModifier.UPDATE_ALL:
specs_map = {
pkg_name: MatchSpec(spec.name, optional=spec.optional)
for pkg_name, spec in iteritems(specs_map)
}
# As a business rule, we never want to update python beyond the current minor version,
# unless that's requested explicitly by the user (which we actively discourage).
if "python" in specs_map:
python_prefix_rec = prefix_data.get("python")
if python_prefix_rec:
python_spec = specs_map["python"]
if not python_spec.get("version"):
pinned_version = (
get_major_minor_version(python_prefix_rec.version) + ".*"
)
specs_map["python"] = MatchSpec(python_spec, version=pinned_version)
# For the aggressive_update_packages configuration parameter, we strip any target
# that's been set.
if not context.offline:
for spec in context.aggressive_update_packages:
if spec.name in specs_map:
old_spec = specs_map[spec.name]
specs_map[spec.name] = MatchSpec(old_spec, target=None)
if (
context.auto_update_conda
and paths_equal(self.prefix, context.root_prefix)
and any(dist.name == "conda" for dist in solution)
):
specs_map["conda"] = MatchSpec("conda")
# add in explicitly requested specs from specs_to_add
# this overrides any name-matching spec already in the spec map
specs_map.update((s.name, s) for s in specs_to_add)
# collect additional specs to add to the solution
track_features_specs = pinned_specs = ()
if context.track_features:
track_features_specs = tuple(MatchSpec(x + "@") for x in context.track_features)
if not ignore_pinned:
pinned_specs = get_pinned_specs(self.prefix)
final_environment_specs = IndexedSet(
concatv(
itervalues(specs_map),
track_features_specs,
pinned_specs,
)
)
# We've previously checked `solution` for consistency (which at that point was the
# pre-solve state of the environment). Now we check our compiled set of
# `final_environment_specs` for the possibility of a solution. If there are conflicts,
# we can often avoid them by neutering specs that have a target (e.g. removing version
# constraint) and also making them optional. The result here will be less cases of
# `UnsatisfiableError` handed to users, at the cost of more packages being modified
# or removed from the environment.
conflicting_specs = r.get_conflicting_specs(tuple(final_environment_specs))
if log.isEnabledFor(DEBUG):
log.debug("conflicting specs: %s", dashlist(conflicting_specs))
for spec in conflicting_specs:
if spec.target:
final_environment_specs.remove(spec)
neutered_spec = MatchSpec(spec.name, target=spec.target, optional=True)
final_environment_specs.add(neutered_spec)
# Finally! We get to call SAT.
if log.isEnabledFor(DEBUG):
log.debug(
"final specs to add: %s",
dashlist(sorted(text_type(s) for s in final_environment_specs)),
)
pre_solution = solution
solution = r.solve(tuple(final_environment_specs)) # return value is List[dist]
# add back inconsistent packages to solution
if add_back_map:
for name, (dist, spec) in iteritems(add_back_map):
if not any(d.name == name for d in solution):
solution.append(dist)
if spec:
final_environment_specs.add(spec)
# Special case handling for various DepsModifer flags. Maybe this block could be pulled
# out into its own non-public helper method?
if deps_modifier == DepsModifier.NO_DEPS:
# In the NO_DEPS case we're just filtering out packages from the solution.
dont_add_packages = []
new_packages = set(solution) - set(pre_solution)
for dist in new_packages:
if not any(spec.match(index[dist]) for spec in specs_to_add):
dont_add_packages.append(dist)
solution = tuple(rec for rec in solution if rec not in dont_add_packages)
elif deps_modifier == DepsModifier.ONLY_DEPS:
# Using a special instance of the DAG to remove leaf nodes that match the original
# specs_to_add. It's important to only remove leaf nodes, because a typical use
# might be `conda install --only-deps python=2 flask`, and in that case we'd want
# to keep python.
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
elif deps_modifier in (
DepsModifier.UPDATE_DEPS,
DepsModifier.UPDATE_DEPS_ONLY_DEPS,
):
# Here we have to SAT solve again :( It's only now that we know the dependency
# chain of specs_to_add.
specs_to_add_names = set(spec.name for spec in specs_to_add)
update_names = set()
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
for spec in specs_to_add:
node = dag.get_node_by_name(spec.name)
for ascendant in node.all_ascendants():
ascendant_name = ascendant.record.name
if ascendant_name not in specs_to_add_names:
update_names.add(ascendant_name)
grouped_specs = groupby(
lambda s: s.name in update_names, final_environment_specs
)
new_final_environment_specs = set(grouped_specs[False])
update_specs = set(
MatchSpec(spec.name, optional=spec.optional) for spec in grouped_specs[True]
)
final_environment_specs = new_final_environment_specs | update_specs
solution = r.solve(final_environment_specs)
if deps_modifier == DepsModifier.UPDATE_DEPS_ONLY_DEPS:
# duplicated from DepsModifier.ONLY_DEPS
dag = PrefixDag((index[d] for d in solution), specs_to_add)
dag.remove_leaf_nodes_with_specs()
solution = tuple(Dist(rec) for rec in dag.records)
if prune:
dag = PrefixDag((index[d] for d in solution), final_environment_specs)
dag.prune()
solution = tuple(Dist(rec) for rec in dag.records)
self._check_solution(solution, pinned_specs)
solution = IndexedSet(r.dependency_sort({d.name: d for d in solution}))
log.debug(
"solved prefix %s\n solved_linked_dists:\n %s\n",
self.prefix,
"\n ".join(text_type(d) for d in solution),
)
return IndexedSet(index[d] for d in solution)
|
https://github.com/conda/conda/issues/6430
|
Traceback (most recent call last):
File \"/home/nicolas/miniconda3/lib/python3.6/site-packages/conda/exceptions.py\", line 683, in __call__
return func(*args, **kwargs)
File \"/home/nicolas/miniconda3/lib/python3.6/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/nicolas/miniconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/nicolas/miniconda3/lib/python3.6/site-packages/conda/cli/main_update.py\", line 14, in execute
install(args, parser, 'update')
File \"/home/nicolas/miniconda3/lib/python3.6/site-packages/conda/cli/install.py\", line 222, in install
force_reinstall=context.force,
File \"/home/nicolas/miniconda3/lib/python3.6/site-packages/conda/core/solve.py\", line 441, in solve_for_transaction
force_remove, force_reinstall)
File \"/home/nicolas/miniconda3/lib/python3.6/site-packages/conda/core/solve.py\", line 391, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File \"/home/nicolas/miniconda3/lib/python3.6/site-packages/conda/core/solve.py\", line 216, in solve_final_state
assert len(matches_for_spec) == 1
AssertionError
|
AssertionError
|
def get_egg_info(prefix, all_pkgs=False):
"""
Return a set of canonical names of all Python packages (in `prefix`),
by inspecting the .egg-info files inside site-packages.
By default, only untracked (not conda installed) .egg-info files are
considered. Setting `all_pkgs` to True changes this.
"""
installed_pkgs = linked_data(prefix)
sp_dir = get_site_packages_dir(installed_pkgs)
if sp_dir is None or not isdir(join(prefix, sp_dir)):
return set()
conda_files = set()
for info in itervalues(installed_pkgs):
conda_files.update(info.get("files", []))
res = set()
for path in get_egg_info_files(join(prefix, sp_dir)):
f = rel_path(prefix, path)
if all_pkgs or f not in conda_files:
try:
dist = parse_egg_info(path)
except UnicodeDecodeError:
dist = None
if dist:
res.add(Dist(dist))
return res
|
def get_egg_info(prefix, all_pkgs=False):
"""
Return a set of canonical names of all Python packages (in `prefix`),
by inspecting the .egg-info files inside site-packages.
By default, only untracked (not conda installed) .egg-info files are
considered. Setting `all_pkgs` to True changes this.
"""
installed_pkgs = linked_data(prefix)
sp_dir = get_site_packages_dir(installed_pkgs)
if sp_dir is None:
return set()
conda_files = set()
for info in itervalues(installed_pkgs):
conda_files.update(info.get("files", []))
res = set()
for path in get_egg_info_files(join(prefix, sp_dir)):
f = rel_path(prefix, path)
if all_pkgs or f not in conda_files:
try:
dist = parse_egg_info(path)
except UnicodeDecodeError:
dist = None
if dist:
res.add(Dist(dist))
return res
|
https://github.com/conda/conda/issues/6466
|
joris@joris-XPS-13-9350:~/scipy$ conda list
# packages in environment at /home/joris/miniconda3:
#
`$ /home/joris/miniconda3/bin/conda list`
Traceback (most recent call last):
File "/home/joris/miniconda3/lib/python3.5/site-packages/conda/exceptions.py", line 683, in __call__
return func(*args, **kwargs)
File "/home/joris/miniconda3/lib/python3.5/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/home/joris/miniconda3/lib/python3.5/site-packages/conda/cli/conda_argparse.py", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/home/joris/miniconda3/lib/python3.5/site-packages/conda/cli/main_list.py", line 150, in execute
show_channel_urls=context.show_channel_urls)
File "/home/joris/miniconda3/lib/python3.5/site-packages/conda/cli/main_list.py", line 85, in print_packages
other_python = get_egg_info(prefix)
File "/home/joris/miniconda3/lib/python3.5/site-packages/conda/egg_info.py", line 86, in get_egg_info
for path in get_egg_info_files(join(prefix, sp_dir)):
File "/home/joris/miniconda3/lib/python3.5/site-packages/conda/egg_info.py", line 35, in get_egg_info_files
for egg in get_egg_info_files(reader.readline().strip()):
File "/home/joris/miniconda3/lib/python3.5/site-packages/conda/egg_info.py", line 32, in get_egg_info_files
for fn in os.listdir(sp_dir):
FileNotFoundError: [Errno 2] No such file or directory: '/home/joris/scipy/dateutil'
|
FileNotFoundError
|
def _build_components(**kwargs):
def _make(field_name, value):
if field_name not in IndexRecord.__fields__:
raise CondaValueError("Cannot match on field %s" % (field_name,))
elif isinstance(value, string_types):
value = text_type(value)
if hasattr(value, "match"):
matcher = value
elif field_name in _implementors:
matcher = _implementors[field_name](value)
else:
matcher = StrMatch(text_type(value))
return field_name, matcher
return frozendict(_make(key, value) for key, value in iteritems(kwargs))
|
def _build_components(**kwargs):
def _make(field_name, value):
if field_name not in IndexRecord.__fields__:
raise CondaValueError("Cannot match on field %s" % (field_name,))
elif isinstance(value, string_types):
value = text_type(value)
if hasattr(value, "match"):
matcher = value
elif field_name in _implementors:
matcher = _implementors[field_name](value)
elif text_type(value):
matcher = StrMatch(value)
else:
raise NotImplementedError()
return field_name, matcher
return frozendict(_make(key, value) for key, value in iteritems(kwargs))
|
https://github.com/conda/conda/issues/6441
|
Traceback (most recent call last):
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/exceptions.py\", line 683, in __call__
return func(*args, **kwargs)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/main_list.py\", line 150, in execute
show_channel_urls=context.show_channel_urls)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/main_list.py\", line 90, in print_packages
show_channel_urls=show_channel_urls)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/main_list.py\", line 52, in list_packages
info = is_linked(prefix, dist)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/core/linked_data.py\", line 166, in is_linked
elif MatchSpec(dist).match(prefix_record):
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 67, in __call__
return super(MatchSpecType, cls).__call__(**parsed)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 178, in __init__
self._match_components = self._build_components(**kwargs)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 359, in _build_components
return frozendict(_make(key, value) for key, value in iteritems(kwargs))
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 359, in <genexpr>
return frozendict(_make(key, value) for key, value in iteritems(kwargs))
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 355, in _make
raise NotImplementedError()
NotImplementedError
|
NotImplementedError
|
def _make(field_name, value):
if field_name not in IndexRecord.__fields__:
raise CondaValueError("Cannot match on field %s" % (field_name,))
elif isinstance(value, string_types):
value = text_type(value)
if hasattr(value, "match"):
matcher = value
elif field_name in _implementors:
matcher = _implementors[field_name](value)
else:
matcher = StrMatch(text_type(value))
return field_name, matcher
|
def _make(field_name, value):
if field_name not in IndexRecord.__fields__:
raise CondaValueError("Cannot match on field %s" % (field_name,))
elif isinstance(value, string_types):
value = text_type(value)
if hasattr(value, "match"):
matcher = value
elif field_name in _implementors:
matcher = _implementors[field_name](value)
elif text_type(value):
matcher = StrMatch(value)
else:
raise NotImplementedError()
return field_name, matcher
|
https://github.com/conda/conda/issues/6441
|
Traceback (most recent call last):
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/exceptions.py\", line 683, in __call__
return func(*args, **kwargs)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/main_list.py\", line 150, in execute
show_channel_urls=context.show_channel_urls)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/main_list.py\", line 90, in print_packages
show_channel_urls=show_channel_urls)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/cli/main_list.py\", line 52, in list_packages
info = is_linked(prefix, dist)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/core/linked_data.py\", line 166, in is_linked
elif MatchSpec(dist).match(prefix_record):
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 67, in __call__
return super(MatchSpecType, cls).__call__(**parsed)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 178, in __init__
self._match_components = self._build_components(**kwargs)
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 359, in _build_components
return frozendict(_make(key, value) for key, value in iteritems(kwargs))
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 359, in <genexpr>
return frozendict(_make(key, value) for key, value in iteritems(kwargs))
File \"/home/rob/miniconda3/lib/python3.6/site-packages/conda/models/match_spec.py\", line 355, in _make
raise NotImplementedError()
NotImplementedError
|
NotImplementedError
|
def get_info_dict(system=False):
try:
from ..install import linked_data
root_pkgs = linked_data(context.root_prefix)
except: # pragma: no cover
root_pkgs = {}
try:
from requests import __version__ as requests_version
# These environment variables can influence requests' behavior, along with configuration
# in a .netrc file
# REQUESTS_CA_BUNDLE
# HTTP_PROXY
# HTTPS_PROXY
except ImportError: # pragma: no cover
try:
from pip._vendor.requests import __version__ as requests_version
except Exception as e: # pragma: no cover
requests_version = "Error %r" % e
except Exception as e: # pragma: no cover
requests_version = "Error %r" % e
try:
from conda_env import __version__ as conda_env_version
except: # pragma: no cover
try:
cenv = [p for p in itervalues(root_pkgs) if p["name"] == "conda-env"]
conda_env_version = cenv[0]["version"]
except:
conda_env_version = "not installed"
try:
import conda_build
except ImportError: # pragma: no cover
conda_build_version = "not installed"
except Exception as e: # pragma: no cover
conda_build_version = "Error %s" % e
else: # pragma: no cover
conda_build_version = conda_build.__version__
channels = list(all_channel_urls(context.channels))
if not context.json:
channels = [c + ("" if offline_keep(c) else " (offline)") for c in channels]
channels = [mask_anaconda_token(c) for c in channels]
config_files = tuple(
path for path in context.collect_all() if path not in ("envvars", "cmd_line")
)
netrc_file = os.environ.get("NETRC")
if not netrc_file:
user_netrc = expanduser("~/.netrc")
if isfile(user_netrc):
netrc_file = user_netrc
active_prefix_name = env_name(context.active_prefix)
info_dict = dict(
platform=context.subdir,
conda_version=conda_version,
conda_env_version=conda_env_version,
conda_build_version=conda_build_version,
root_prefix=context.root_prefix,
conda_prefix=context.conda_prefix,
conda_private=conda_in_private_env(),
root_writable=context.root_writable,
pkgs_dirs=context.pkgs_dirs,
envs_dirs=context.envs_dirs,
default_prefix=context.default_prefix,
active_prefix=context.active_prefix,
active_prefix_name=active_prefix_name,
conda_shlvl=context.shlvl,
channels=channels,
user_rc_path=user_rc_path,
rc_path=user_rc_path,
sys_rc_path=sys_rc_path,
# is_foreign=bool(foreign),
offline=context.offline,
envs=[],
python_version=".".join(map(str, sys.version_info)),
requests_version=requests_version,
user_agent=context.user_agent,
conda_location=CONDA_PACKAGE_ROOT,
config_files=config_files,
netrc_file=netrc_file,
)
if on_win:
from ..common.platform import is_admin_on_windows
info_dict["is_windows_admin"] = is_admin_on_windows()
else:
info_dict["UID"] = os.geteuid()
info_dict["GID"] = os.getegid()
evars = {
"CIO_TEST",
"REQUESTS_CA_BUNDLE",
"SSL_CERT_FILE",
}
# add all relevant env vars, e.g. startswith('CONDA') or endswith('PATH')
evars.update(v for v in os.environ if v.upper().startswith("CONDA"))
evars.update(v for v in os.environ if v.upper().startswith("PYTHON"))
evars.update(v for v in os.environ if v.upper().endswith("PROXY"))
evars.update(v for v in os.environ if v.upper().endswith("PATH"))
info_dict.update(
{
"sys.version": sys.version,
"sys.prefix": sys.prefix,
"sys.executable": sys.executable,
"site_dirs": get_user_site(),
"env_vars": {
ev: os.getenv(ev, os.getenv(ev.lower(), "<not set>")) for ev in evars
},
}
)
return info_dict
|
def get_info_dict(system=False):
try:
from ..install import linked_data
root_pkgs = linked_data(context.root_prefix)
except: # pragma: no cover
root_pkgs = {}
try:
from requests import __version__ as requests_version
# These environment variables can influence requests' behavior, along with configuration
# in a .netrc file
# REQUESTS_CA_BUNDLE
# HTTP_PROXY
# HTTPS_PROXY
except ImportError: # pragma: no cover
try:
from pip._vendor.requests import __version__ as requests_version
except Exception as e: # pragma: no cover
requests_version = "Error %r" % e
except Exception as e: # pragma: no cover
requests_version = "Error %r" % e
try:
from conda_env import __version__ as conda_env_version
except: # pragma: no cover
try:
cenv = [p for p in itervalues(root_pkgs) if p["name"] == "conda-env"]
conda_env_version = cenv[0]["version"]
except:
conda_env_version = "not installed"
try:
import conda_build
except ImportError: # pragma: no cover
conda_build_version = "not installed"
except Exception as e: # pragma: no cover
conda_build_version = "Error %s" % e
else: # pragma: no cover
conda_build_version = conda_build.__version__
channels = list(all_channel_urls(context.channels))
if not context.json:
channels = [c + ("" if offline_keep(c) else " (offline)") for c in channels]
channels = [mask_anaconda_token(c) for c in channels]
config_files = tuple(
path for path in context.collect_all() if path not in ("envvars", "cmd_line")
)
netrc_file = os.environ.get("NETRC")
if not netrc_file:
user_netrc = expanduser("~/.netrc")
if isfile(user_netrc):
netrc_file = user_netrc
active_prefix_name = env_name(context.active_prefix)
info_dict = dict(
platform=context.subdir,
conda_version=conda_version,
conda_env_version=conda_env_version,
conda_build_version=conda_build_version,
root_prefix=context.root_prefix,
conda_prefix=context.conda_prefix,
conda_private=conda_in_private_env(),
root_writable=context.root_writable,
pkgs_dirs=context.pkgs_dirs,
envs_dirs=context.envs_dirs,
default_prefix=context.default_prefix,
active_prefix=context.active_prefix,
active_prefix_name=active_prefix_name,
conda_shlvl=context.shlvl,
channels=channels,
user_rc_path=user_rc_path,
rc_path=user_rc_path,
sys_rc_path=sys_rc_path,
# is_foreign=bool(foreign),
offline=context.offline,
envs=[],
python_version=".".join(map(str, sys.version_info)),
requests_version=requests_version,
user_agent=context.user_agent,
conda_location=CONDA_PACKAGE_ROOT,
config_files=config_files,
netrc_file=netrc_file,
)
if on_win:
from ..common.platform import is_admin_on_windows
info_dict["is_windows_admin"] = is_admin_on_windows()
else:
info_dict["UID"] = os.geteuid()
info_dict["GID"] = os.getegid()
if system:
evars = {
"CIO_TEST",
"CONDA_DEFAULT_ENV",
"CONDA_ENVS_PATH",
"DYLD_LIBRARY_PATH",
"FTP_PROXY",
"HTTP_PROXY",
"HTTPS_PROXY",
"LD_LIBRARY_PATH",
"PATH",
"PYTHONHOME",
"PYTHONPATH",
"REQUESTS_CA_BUNDLE",
"SSL_CERT_FILE",
}
evars.update(v for v in os.environ if v.startswith("CONDA_"))
evars.update(v for v in os.environ if v.startswith("conda_"))
info_dict.update(
{
"sys.version": sys.version,
"sys.prefix": sys.prefix,
"sys.executable": sys.executable,
"site_dirs": get_user_site(),
"env_vars": {
ev: os.getenv(ev, os.getenv(ev.lower(), "<not set>"))
for ev in evars
},
}
)
return info_dict
|
https://github.com/conda/conda/issues/6431
|
Traceback (most recent call last):
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 265, in _make_single_record
repodata_record = read_repodata_json(extracted_package_dir)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/gateways/disk/read.py\", line 123, in read_repodata_json
with open(join(extracted_package_directory, 'info', 'repodata_record.json')) as fi:
FileNotFoundError: [Errno 2] No such file or directory: '/home/travis/miniconda/pkgs/test_source_files-1-0/info/repodata_record.json'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 276, in _make_single_record
index_json_record = read_index_json(extracted_package_dir)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/gateways/disk/read.py\", line 111, in read_index_json
with open(join(extracted_package_directory, 'info', 'index.json')) as fi:
FileNotFoundError: [Errno 2] No such file or directory: '/home/travis/miniconda/pkgs/test_source_files-1-0/info/index.json'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/exceptions.py\", line 683, in __call__
return func(*args, **kwargs)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/cli/main_create.py\", line 11, in execute
install(args, parser, 'create')
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/cli/install.py\", line 241, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/cli/install.py\", line 258, in handle_txn
unlink_link_transaction.display_actions(progressive_fetch_extract)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/link.py\", line 704, in display_actions
legacy_action_groups = self.make_legacy_action_groups(pfe)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/link.py\", line 687, in make_legacy_action_groups
pfe.prepare()
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 504, in prepare
for prec in self.link_precs)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 504, in <genexpr>
for prec in self.link_precs)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 399, in make_actions_for_record
), None)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 396, in <genexpr>
pcrec for pcrec in concat(PackageCache(pkgs_dir).query(pref_or_spec)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 397, in <genexpr>
for pkgs_dir in context.pkgs_dirs)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 116, in query
return (pcrec for pcrec in itervalues(self._package_cache_records) if pcrec == param)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 208, in _package_cache_records
return self.__package_cache_records or self.load() or self.__package_cache_records
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 88, in load
package_cache_record = self._make_single_record(base_name)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/core/package_cache.py\", line 291, in _make_single_record
extract_tarball(package_tarball_full_path, extracted_package_dir)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda-4.4.0rc2.post15+0dc8573d-py3.6.egg/conda/gateways/disk/create.py\", line 133, in extract_tarball
assert not lexists(destination_directory), destination_directory
AssertionError: /home/travis/miniconda/pkgs/test_source_files-1-0
|
FileNotFoundError
|
def execute(args, parser):
if not (args.all or args.package_names):
raise CondaValueError(
'no package names supplied,\n try "conda remove -h" for more details'
)
prefix = context.target_prefix
check_non_admin()
if args.all and prefix == context.default_prefix:
msg = "cannot remove current environment. deactivate and run conda remove again"
raise CondaEnvironmentError(msg)
if args.all and not isdir(prefix):
# full environment removal was requested, but environment doesn't exist anyway
return 0
if not is_conda_environment(prefix):
from ..exceptions import EnvironmentLocationNotFound
raise EnvironmentLocationNotFound(prefix)
delete_trash()
if args.all:
if prefix == context.root_prefix:
raise CondaEnvironmentError(
"cannot remove root environment,\n"
" add -n NAME or -p PREFIX option"
)
print("\nRemove all packages in environment %s:\n" % prefix, file=sys.stderr)
index = linked_data(prefix)
index = {dist: info for dist, info in iteritems(index)}
actions = defaultdict(list)
actions[PREFIX] = prefix
for dist in sorted(iterkeys(index)):
add_unlink(actions, dist)
actions["ACTION"] = "REMOVE_ALL"
action_groups = ((actions, index),)
if not context.json:
confirm_yn()
rm_rf(prefix)
if context.json:
stdout_json(
{"success": True, "actions": tuple(x[0] for x in action_groups)}
)
return
else:
specs = specs_from_args(args.package_names)
channel_urls = ()
subdirs = ()
solver = Solver(prefix, channel_urls, subdirs, specs_to_remove=specs)
txn = solver.solve_for_transaction(force_remove=args.force)
pfe = txn.get_pfe()
handle_txn(pfe, txn, prefix, args, False, True)
|
def execute(args, parser):
if not (args.all or args.package_names or args.features):
raise CondaValueError(
'no package names supplied,\n try "conda remove -h" for more details'
)
prefix = context.target_prefix
check_non_admin()
if args.all and prefix == context.default_prefix:
msg = "cannot remove current environment. deactivate and run conda remove again"
raise CondaEnvironmentError(msg)
if args.all and not isdir(prefix):
# full environment removal was requested, but environment doesn't exist anyway
return 0
if not is_conda_environment(prefix):
from ..exceptions import EnvironmentLocationNotFound
raise EnvironmentLocationNotFound(prefix)
delete_trash()
if args.all:
if prefix == context.root_prefix:
raise CondaEnvironmentError(
"cannot remove root environment,\n"
" add -n NAME or -p PREFIX option"
)
print("\nRemove all packages in environment %s:\n" % prefix, file=sys.stderr)
index = linked_data(prefix)
index = {dist: info for dist, info in iteritems(index)}
actions = defaultdict(list)
actions[PREFIX] = prefix
for dist in sorted(iterkeys(index)):
add_unlink(actions, dist)
actions["ACTION"] = "REMOVE_ALL"
action_groups = ((actions, index),)
if not context.json:
confirm_yn()
rm_rf(prefix)
if context.json:
stdout_json(
{"success": True, "actions": tuple(x[0] for x in action_groups)}
)
return
else:
specs = specs_from_args(args.package_names)
channel_urls = ()
subdirs = ()
solver = Solver(prefix, channel_urls, subdirs, specs_to_remove=specs)
txn = solver.solve_for_transaction(force_remove=args.force)
pfe = txn.get_pfe()
handle_txn(pfe, txn, prefix, args, False, True)
|
https://github.com/conda/conda/issues/6429
|
AttributeError", "exception_type": "<class 'AttributeError'>", "traceback": "Traceback (most recent call last):
File \"/home/matt/anaconda3/lib/python3.6/site-packages/conda/exceptions.py\", line 683, in __call__
return func(*args, **kwargs)
File \"/home/matt/anaconda3/lib/python3.6/site-packages/conda/cli/main.py\", line 78, in _main
exit_code = do_call(args, p)
File \"/home/matt/anaconda3/lib/python3.6/site-packages/conda/cli/conda_argparse.py\", line 75, in do_call
exit_code = getattr(module, func_name)(args, parser)
File \"/home/matt/anaconda3/lib/python3.6/site-packages/conda/cli/main_remove.py\", line 28, in execute
if not (args.all or args.package_names or args.features):
AttributeError: 'Namespace' object has no attribute 'features'
|
AttributeError
|
def execute(args, parser):
from conda.base.context import context
name = args.remote_definition or args.name
try:
spec = specs.detect(
name=name, filename=expand(args.file), directory=os.getcwd()
)
env = spec.environment
# FIXME conda code currently requires args to have a name or prefix
# don't overwrite name if it's given. gh-254
if args.prefix is None and args.name is None:
args.name = env.name
except exceptions.SpecNotFound:
raise
prefix = get_prefix(args, search=False)
if args.force and prefix != context.root_prefix and os.path.exists(prefix):
rm_rf(prefix)
cli_install.check_prefix(prefix, json=args.json)
# TODO, add capability
# common.ensure_override_channels_requires_channel(args)
# channel_urls = args.channel or ()
# # special case for empty environment
# if not env.dependencies:
# from conda.install import symlink_conda
# symlink_conda(prefix, context.root_dir)
for installer_type, pkg_specs in env.dependencies.items():
try:
installer = get_installer(installer_type)
installer.install(prefix, pkg_specs, args, env)
except InvalidInstaller:
sys.stderr.write(
textwrap.dedent("""
Unable to install package for {0}.
Please double check and ensure your dependencies file has
the correct spelling. You might also try installing the
conda-env-{0} package to see if provides the required
installer.
""")
.lstrip()
.format(installer_type)
)
return -1
touch_nonadmin(prefix)
cli_install.print_activate(args.name if args.name else prefix)
|
def execute(args, parser):
from conda.base.context import context
name = args.remote_definition or args.name
try:
spec = specs.detect(
name=name, filename=expand(args.file), directory=os.getcwd()
)
env = spec.environment
# FIXME conda code currently requires args to have a name or prefix
# don't overwrite name if it's given. gh-254
if args.prefix is None and args.name is None:
args.name = env.name
except exceptions.SpecNotFound:
raise
prefix = get_prefix(args, search=False)
if args.force and prefix != context.root_prefix and os.path.exists(prefix):
rm_rf(prefix)
cli_install.check_prefix(prefix, json=args.json)
# TODO, add capability
# common.ensure_override_channels_requires_channel(args)
# channel_urls = args.channel or ()
# # special case for empty environment
# if not env.dependencies:
# from conda.install import symlink_conda
# symlink_conda(prefix, context.root_dir)
for installer_type, pkg_specs in env.dependencies.items():
try:
installer = get_installer(installer_type)
installer.install(prefix, pkg_specs, args, env)
except InvalidInstaller:
sys.stderr.write(
textwrap.dedent("""
Unable to install package for {0}.
Please double check and ensure you dependencies file has
the correct spelling. You might also try installing the
conda-env-{0} package to see if provides the required
installer.
""")
.lstrip()
.format(installer_type)
)
return -1
touch_nonadmin(prefix)
cli_install.print_activate(args.name if args.name else prefix)
|
https://github.com/conda/conda/issues/5680
|
$ cat environment.yml
dependencies:
- pip:
$ conda env create -n recreate --file=environment.yml
Fetching package metadata ...........
Solving package specifications: An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.3.13
conda is private : False
conda-env version : 4.3.13
conda-build version : 2.1.5
python version : 3.5.2.final.0
requests version : 2.13.0
root environment : /opt/ts/services/miniconda.ext_public_miniconda/dist (read only)
default environment : /opt/ts/services/miniconda.ext_public_miniconda/dist
envs directories : /nas/dft/ire/rhys/envs
/opt/ts/services/miniconda.ext_public_miniconda/dist/envs
/home/rhys/.conda/envs
package cache : /opt/ts/services/miniconda.ext_public_miniconda/dist/pkgs
/home/rhys/.conda/pkgs
channel URLs : http://python3.app.twosigma.com/conda/twosigma.com/ts/linux-64
http://python3.app.twosigma.com/conda/twosigma.com/ts/noarch
http://python3.app.twosigma.com/conda/twosigma.com/ext/linux-64
http://python3.app.twosigma.com/conda/twosigma.com/ext/noarch
http://python3.app.twosigma.com/conda/repo.continuum.io/pkgs/free/linux-64
http://python3.app.twosigma.com/conda/repo.continuum.io/pkgs/free/noarch
http://python3.app.twosigma.com/conda/repo.continuum.io/pkgs/pro/linux-64
http://python3.app.twosigma.com/conda/repo.continuum.io/pkgs/pro/noarch
config file : /home/rhys/.condarc
offline mode : False
user-agent : conda/4.3.13 requests/2.13.0 CPython/3.5.2 Linux/4.1.35-pv-ts2 debian/7.10 glibc/2.13
UID:GID : 11082:5000
`$ /opt/ts/services/miniconda.ext_public_miniconda/dist/bin/conda-env create -n recreate --file=environment.yml`
Traceback (most recent call last):
File "/opt/ts/services/miniconda.ext_public_miniconda/dist/lib/python3.5/site-packages/conda/exceptions.py", line 591, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/opt/ts/services/miniconda.ext_public_miniconda/dist/lib/python3.5/site-packages/conda_env/cli/main_create.py", line 108, in execute
installer.install(prefix, pkg_specs, args, env)
File "/opt/ts/services/miniconda.ext_public_miniconda/dist/lib/python3.5/site-packages/conda_env/installers/pip.py", line 8, in install
pip_cmd = pip_args(prefix) + ['install', ] + specs
TypeError: unsupported operand type(s) for +: 'NoneType' and 'list'
|
TypeError
|
def parse(self):
if not self.raw:
return
self.update({"conda": []})
for line in self.raw:
if isinstance(line, dict):
self.update(line)
else:
self["conda"].append(common.arg2spec(line))
if "pip" in self:
if not self["pip"]:
del self["pip"]
if not any(MatchSpec(s).name == "pip" for s in self["conda"]):
self["conda"].append("pip")
|
def parse(self):
if not self.raw:
return
self.update({"conda": []})
for line in self.raw:
if isinstance(line, dict):
self.update(line)
else:
self["conda"].append(common.arg2spec(line))
|
https://github.com/conda/conda/issues/5680
|
$ cat environment.yml
dependencies:
- pip:
$ conda env create -n recreate --file=environment.yml
Fetching package metadata ...........
Solving package specifications: An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.3.13
conda is private : False
conda-env version : 4.3.13
conda-build version : 2.1.5
python version : 3.5.2.final.0
requests version : 2.13.0
root environment : /opt/ts/services/miniconda.ext_public_miniconda/dist (read only)
default environment : /opt/ts/services/miniconda.ext_public_miniconda/dist
envs directories : /nas/dft/ire/rhys/envs
/opt/ts/services/miniconda.ext_public_miniconda/dist/envs
/home/rhys/.conda/envs
package cache : /opt/ts/services/miniconda.ext_public_miniconda/dist/pkgs
/home/rhys/.conda/pkgs
channel URLs : http://python3.app.twosigma.com/conda/twosigma.com/ts/linux-64
http://python3.app.twosigma.com/conda/twosigma.com/ts/noarch
http://python3.app.twosigma.com/conda/twosigma.com/ext/linux-64
http://python3.app.twosigma.com/conda/twosigma.com/ext/noarch
http://python3.app.twosigma.com/conda/repo.continuum.io/pkgs/free/linux-64
http://python3.app.twosigma.com/conda/repo.continuum.io/pkgs/free/noarch
http://python3.app.twosigma.com/conda/repo.continuum.io/pkgs/pro/linux-64
http://python3.app.twosigma.com/conda/repo.continuum.io/pkgs/pro/noarch
config file : /home/rhys/.condarc
offline mode : False
user-agent : conda/4.3.13 requests/2.13.0 CPython/3.5.2 Linux/4.1.35-pv-ts2 debian/7.10 glibc/2.13
UID:GID : 11082:5000
`$ /opt/ts/services/miniconda.ext_public_miniconda/dist/bin/conda-env create -n recreate --file=environment.yml`
Traceback (most recent call last):
File "/opt/ts/services/miniconda.ext_public_miniconda/dist/lib/python3.5/site-packages/conda/exceptions.py", line 591, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/opt/ts/services/miniconda.ext_public_miniconda/dist/lib/python3.5/site-packages/conda_env/cli/main_create.py", line 108, in execute
installer.install(prefix, pkg_specs, args, env)
File "/opt/ts/services/miniconda.ext_public_miniconda/dist/lib/python3.5/site-packages/conda_env/installers/pip.py", line 8, in install
pip_cmd = pip_args(prefix) + ['install', ] + specs
TypeError: unsupported operand type(s) for +: 'NoneType' and 'list'
|
TypeError
|
def configure_parser(sub_parsers):
list_parser = sub_parsers.add_parser(
"list",
formatter_class=RawDescriptionHelpFormatter,
description=description,
help=description,
epilog=example,
)
common.add_parser_json(list_parser)
list_parser.set_defaults(func=execute)
|
def configure_parser(sub_parsers):
l = sub_parsers.add_parser(
"list",
formatter_class=RawDescriptionHelpFormatter,
description=description,
help=description,
epilog=example,
)
common.add_parser_json(l)
l.set_defaults(func=execute)
|
https://github.com/conda/conda/issues/6023
|
Traceback (most recent call last):
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\exceptions.py", line 632, in conda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\cli\main.py", line 137, in _main
exit_code = args.func(args, p)
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\cli\main_install.py", line 80, in execute
install(args, parser, 'install')
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\cli\install.py", line 357, in install
execute_actions(actions, index, verbose=not context.quiet)
File "C:\Users\dbsr7927\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\plan.py", line 830, in execute_actions
execute_instructions(plan, index, verbose)
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\instructions.py", line 247, in execute_instructions
cmd(state, arg)
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\instructions.py", line 108, in UNLINKLINKTRANSACTION_CMD
txn.execute()
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\core\link.py", line 263, in execute
self.verify()
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\core\link.py", line 242, in verify
self.prepare()
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\core\link.py", line 149, in prepare
for pkg_info in self.packages_info_to_link)
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\core\link.py", line 149, in <genexpr>
for pkg_info in self.packages_info_to_link)
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\core\link.py", line 54, in determine_link_type
if hardlink_supported(source_test_file, target_prefix):
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\_vendor\auxlib\decorators.py", line 56, in _memoized_func
result = func(*args, **kwargs)
File "C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\lib\site-packages\conda\gateways\disk\test.py", line 84, in hardlink_supported
assert not lexists(test_file), test_file
AssertionError: C:\Users\xxxx\AppData\Local\Continuum\Anaconda3\.tmp.index.json
|
AssertionError
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
except (IOError, OSError):
# no info/repodata_record.json exists
# try reading info/index.json
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError):
# info/index.json doesn't exist either
if isdir(extracted_package_dir) and not isfile(package_tarball_full_path):
# We have a directory that looks like a conda package, but without
# (1) info/repodata_record.json or info/index.json, and (2) a conda package
# tarball, there's not much we can do. We'll just ignore it.
return None
try:
if self.is_writable:
if isdir(extracted_package_dir):
# We have a partially unpacked conda package directory. Best thing
# to do is remove it and try extracting.
rm_rf(extracted_package_dir)
extract_tarball(package_tarball_full_path, extracted_package_dir)
index_json_record = read_index_json(extracted_package_dir)
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError):
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
rm_rf(package_tarball_full_path)
return None
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
# write the info/repodata_record.json file so we can short-circuit this next time
if self.is_writable:
repodata_record = PackageRecord.from_objects(package_cache_record)
repodata_record_path = join(
extracted_package_dir, "info", "repodata_record.json"
)
write_as_json_to_file(repodata_record_path, repodata_record)
return package_cache_record
|
def _make_single_record(self, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
package_tarball_full_path = join(self.pkgs_dir, package_filename)
log.trace("adding to package cache %s", package_tarball_full_path)
extracted_package_dir = package_tarball_full_path[: -len(CONDA_TARBALL_EXTENSION)]
# try reading info/repodata_record.json
try:
repodata_record = read_repodata_json(extracted_package_dir)
package_cache_record = PackageCacheRecord.from_objects(
repodata_record,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
except (IOError, OSError):
try:
index_json_record = read_index_json(extracted_package_dir)
except (IOError, OSError):
try:
if self.is_writable:
extract_tarball(package_tarball_full_path, extracted_package_dir)
index_json_record = read_index_json(extracted_package_dir)
else:
index_json_record = read_index_json_from_tarball(
package_tarball_full_path
)
except (EOFError, ReadError):
# EOFError: Compressed file ended before the end-of-stream marker was reached
# tarfile.ReadError: file could not be opened successfully
rm_rf(package_tarball_full_path)
return None
if isfile(package_tarball_full_path):
md5 = compute_md5sum(package_tarball_full_path)
else:
md5 = None
url = first(self._urls_data, lambda x: basename(x) == package_filename)
package_cache_record = PackageCacheRecord.from_objects(
index_json_record,
url=url,
md5=md5,
package_tarball_full_path=package_tarball_full_path,
extracted_package_dir=extracted_package_dir,
)
return package_cache_record
|
https://github.com/conda/conda/issues/5808
|
{
"command":"D:\\Anaconda3\\Scripts\\conda-script.py install -c anaconda pillow",
"conda_info":{
"_channels":"https://conda.anaconda.org/anaconda/win-64
https://conda.anaconda.org/anaconda/noarch
https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/win-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch",
"_config_files":"",
"_envs_dirs":"D:\\Anaconda3\\envs
C:\\Users\\username\\AppData\\Local\\conda\\conda\\envs
C:\\Users\\username\\.conda\\envs",
"_pkgs_dirs":"D:\\Anaconda3\\pkgs
C:\\Users\\username\\AppData\\Local\\conda\\conda\\pkgs",
"_rtwro":"writable",
"active_prefix":null,
"active_prefix_name":null,
"channels":[
"https://conda.anaconda.org/anaconda/win-64",
"https://conda.anaconda.org/anaconda/noarch",
"https://repo.continuum.io/pkgs/free/win-64",
"https://repo.continuum.io/pkgs/free/noarch",
"https://repo.continuum.io/pkgs/r/win-64",
"https://repo.continuum.io/pkgs/r/noarch",
"https://repo.continuum.io/pkgs/pro/win-64",
"https://repo.continuum.io/pkgs/pro/noarch",
"https://repo.continuum.io/pkgs/msys2/win-64",
"https://repo.continuum.io/pkgs/msys2/noarch"
],
"conda_build_version":"3.0.6",
"conda_env_version":"4.4.0rc0",
"conda_location":"D:\\Anaconda3\\lib\\site-packages\\conda",
"conda_prefix":"D:\\Anaconda3",
"conda_private":false,
"conda_shlvl":-1,
"conda_version":"4.4.0rc0",
"config_files":[
],
"default_prefix":"D:\\Anaconda3",
"envs":[
],
"envs_dirs":[
"D:\\Anaconda3\\envs",
"C:\\Users\\username\\AppData\\Local\\conda\\conda\\envs",
"C:\\Users\\username\\.conda\\envs"
],
"is_windows_admin":false,
"netrc_file":null,
"offline":false,
"pkgs_dirs":[
"D:\\Anaconda3\\pkgs",
"C:\\Users\\username\\AppData\\Local\\conda\\conda\\pkgs"
],
"platform":"win-64",
"python_version":"3.5.3.final.0",
"rc_path":"C:\\Users\\username\\.condarc",
"requests_version":"2.14.2",
"root_prefix":"D:\\Anaconda3",
"root_writable":true,
"sys_rc_path":"D:\\Anaconda3\\.condarc",
"user_agent":"conda/4.4.0rc0 requests/2.14.2 CPython/3.5.3 Windows/10 Windows/10.0.15063",
"user_rc_path":"C:\\Users\\username\\.condarc"
},
"error":"AssertionError('D:\\\\Anaconda3\\\\pkgs\\\\numpy-1.10.1-py35_0',)",
"exception_name":"AssertionError",
"exception_type":"<class 'AssertionError'>",
"traceback":"Traceback (most recent call last):
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 262, in _make_single_record
repodata_record = read_repodata_json(extracted_package_dir)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\gateways\\disk\\read.py\", line 123, in read_repodata_json
with open(join(extracted_package_directory, 'info', 'repodata_record.json')) as fi:
FileNotFoundError: [Errno 2] No such file or directory: 'D:\\\\Anaconda3\\\\pkgs\\\\numpy-1.10.1-py35_0\\\\info\\\\repodata_record.json'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 270, in _make_single_record
index_json_record = read_index_json(extracted_package_dir)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\gateways\\disk\\read.py\", line 111, in read_index_json
with open(join(extracted_package_directory, 'info', 'index.json')) as fi:
FileNotFoundError: [Errno 2] No such file or directory: 'D:\\\\Anaconda3\\\\pkgs\\\\numpy-1.10.1-py35_0\\\\info\\\\index.json'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\exceptions.py\", line 653, in __call__
return func(*args, **kwargs)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\cli\\main.py\", line 136, in _main
exit_code = args.func(args, p)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\cli\\main_install.py\", line 80, in execute
install(args, parser, 'install')
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\cli\\install.py\", line 220, in install
handle_txn(progressive_fetch_extract, unlink_link_transaction, prefix, args, newenv)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\cli\\install.py\", line 237, in handle_txn
unlink_link_transaction.display_actions(progressive_fetch_extract)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\link.py\", line 698, in display_actions
legacy_action_groups = self.make_legacy_action_groups(pfe)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\link.py\", line 681, in make_legacy_action_groups
pfe.prepare()
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 479, in prepare
for prec in self.link_precs)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 479, in <genexpr>
for prec in self.link_precs)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 375, in make_actions_for_record
), None)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 372, in <genexpr>
pcrec for pcrec in concat(PackageCache(pkgs_dir).query(pref_or_spec)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 373, in <genexpr>
for pkgs_dir in context.pkgs_dirs)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 116, in query
return (pcrec for pcrec in itervalues(self._package_cache_records) if pcrec == param)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 208, in _package_cache_records
return self.__package_cache_records or self.load() or self.__package_cache_records
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 88, in load
package_cache_record = self._make_single_record(base_name)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\core\\package_cache.py\", line 274, in _make_single_record
extract_tarball(package_tarball_full_path, extracted_package_dir)
File \"D:\\Anaconda3\\lib\\site-packages\\conda\\gateways\\disk\\create.py\", line 133, in extract_tarball
assert not lexists(destination_directory), destination_directory
AssertionError: D:\\Anaconda3\\pkgs\\numpy-1.10.1-py35_0
"
}
|
FileNotFoundError
|
def execute(args, parser):
name = args.remote_definition or args.name
try:
spec = install_specs.detect(
name=name, filename=expand(args.file), directory=os.getcwd()
)
env = spec.environment
except exceptions.SpecNotFound:
raise
if not (args.name or args.prefix):
if not env.name:
# Note, this is a hack fofr get_prefix that assumes argparse results
# TODO Refactor common.get_prefix
name = os.environ.get("CONDA_DEFAULT_ENV", False)
if not name:
msg = "Unable to determine environment\n\n"
msg += textwrap.dedent("""
Please re-run this command with one of the following options:
* Provide an environment name via --name or -n
* Re-run this command inside an activated conda environment.""").lstrip()
# TODO Add json support
raise CondaEnvException(msg)
# Note: stubbing out the args object as all of the
# conda.cli.common code thinks that name will always
# be specified.
args.name = env.name
prefix = get_prefix(args, search=False)
# CAN'T Check with this function since it assumes we will create prefix.
# cli_install.check_prefix(prefix, json=args.json)
# TODO, add capability
# common.ensure_override_channels_requires_channel(args)
# channel_urls = args.channel or ()
for installer_type, specs in env.dependencies.items():
try:
installer = get_installer(installer_type)
installer.install(prefix, specs, args, env)
except InvalidInstaller:
sys.stderr.write(
textwrap.dedent("""
Unable to install package for {0}.
Please double check and ensure you dependencies file has
the correct spelling. You might also try installing the
conda-env-{0} package to see if provides the required
installer.
""")
.lstrip()
.format(installer_type)
)
return -1
touch_nonadmin(prefix)
cli_install.print_activate(args.name if args.name else prefix)
|
def execute(args, parser):
name = args.remote_definition or args.name
try:
spec = install_specs.detect(
name=name, filename=expand(args.file), directory=os.getcwd()
)
env = spec.environment
except exceptions.SpecNotFound:
raise
if not (args.name or args.prefix):
if not env.name:
# Note, this is a hack fofr get_prefix that assumes argparse results
# TODO Refactor common.get_prefix
name = os.environ.get("CONDA_DEFAULT_ENV", False)
if not name:
msg = "Unable to determine environment\n\n"
msg += textwrap.dedent("""
Please re-run this command with one of the following options:
* Provide an environment name via --name or -n
* Re-run this command inside an activated conda environment.""").lstrip()
# TODO Add json support
raise CondaEnvException(msg)
# Note: stubbing out the args object as all of the
# conda.cli.common code thinks that name will always
# be specified.
args.name = env.name
prefix = get_prefix(args, search=False)
# CAN'T Check with this function since it assumes we will create prefix.
# cli_install.check_prefix(prefix, json=args.json)
# TODO, add capability
# common.ensure_override_channels_requires_channel(args)
# channel_urls = args.channel or ()
for installer_type, specs in env.dependencies.items():
try:
installer = get_installer(installer_type)
installer.install(prefix, specs, args, env, prune=args.prune)
except InvalidInstaller:
sys.stderr.write(
textwrap.dedent("""
Unable to install package for {0}.
Please double check and ensure you dependencies file has
the correct spelling. You might also try installing the
conda-env-{0} package to see if provides the required
installer.
""")
.lstrip()
.format(installer_type)
)
return -1
touch_nonadmin(prefix)
cli_install.print_activate(args.name if args.name else prefix)
|
https://github.com/conda/conda/issues/5809
|
{
"command":"/home/travis/miniconda/bin/conda-env update",
"conda_info":{
"GID":2000,
"UID":2000,
"_channels":"https://conda.anaconda.org/conda-canary/linux-64
https://conda.anaconda.org/conda-canary/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch",
"_config_files":"/home/travis/.condarc",
"_envs_dirs":"/home/travis/miniconda/envs
/home/travis/.conda/envs",
"_pkgs_dirs":"/home/travis/miniconda/pkgs
/home/travis/.conda/pkgs",
"_rtwro":"writable",
"active_prefix":null,
"active_prefix_name":null,
"channels":[
"https://conda.anaconda.org/conda-canary/linux-64",
"https://conda.anaconda.org/conda-canary/noarch",
"https://repo.continuum.io/pkgs/free/linux-64",
"https://repo.continuum.io/pkgs/free/noarch",
"https://repo.continuum.io/pkgs/r/linux-64",
"https://repo.continuum.io/pkgs/r/noarch",
"https://repo.continuum.io/pkgs/pro/linux-64",
"https://repo.continuum.io/pkgs/pro/noarch"
],
"conda_build_version":"not installed",
"conda_env_version":"4.4.0rc0",
"conda_location":"/home/travis/miniconda/lib/python3.6/site-packages/conda",
"conda_prefix":"/home/travis/miniconda",
"conda_private":false,
"conda_shlvl":-1,
"conda_version":"4.4.0rc0",
"config_files":[
"/home/travis/.condarc"
],
"default_prefix":"/home/travis/miniconda",
"envs":[
],
"envs_dirs":[
"/home/travis/miniconda/envs",
"/home/travis/.conda/envs"
],
"netrc_file":null,
"offline":false,
"pkgs_dirs":[
"/home/travis/miniconda/pkgs",
"/home/travis/.conda/pkgs"
],
"platform":"linux-64",
"python_version":"3.6.1.final.0",
"rc_path":"/home/travis/.condarc",
"requests_version":"2.14.2",
"root_prefix":"/home/travis/miniconda",
"root_writable":true,
"sys_rc_path":"/home/travis/miniconda/.condarc",
"user_agent":"conda/4.4.0rc0 requests/2.14.2 CPython/3.6.1 Linux/4.4.0-83-generic ubuntu/14.04 glibc/2.19",
"user_rc_path":"/home/travis/.condarc"
},
"error":"TypeError(\"_pip_install_via_requirements() got an unexpected keyword argument 'prune'\",)",
"exception_name":"TypeError",
"exception_type":"<class 'TypeError'>",
"traceback":"Traceback (most recent call last):
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda/exceptions.py\", line 653, in __call__
return func(*args, **kwargs)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda_env/cli/main_update.py\", line 107, in execute
installer.install(prefix, specs, args, env, prune=args.prune)
TypeError: _pip_install_via_requirements() got an unexpected keyword argument 'prune'
"
}
|
TypeError
|
def install(prefix, specs, args, env, *_, **kwargs):
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
new_specs = []
channel_urls = set()
for elem in specs:
if "::" in elem:
channel_urls.add(elem.split("::")[0])
new_specs.append(elem.split("::")[-1])
else:
new_specs.append(elem)
specs = new_specs
channel_urls = list(channel_urls)
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
channel_urls = channel_urls + [
chan for chan in env.channels if chan != "nodefaults"
]
if "nodefaults" not in env.channels:
channel_urls.extend(context.channels)
_channel_priority_map = prioritize_channels(channel_urls)
channel_names = IndexedSet(
Channel(url).canonical_name for url in _channel_priority_map
)
channels = IndexedSet(Channel(cn) for cn in channel_names)
subdirs = IndexedSet(basename(url) for url in _channel_priority_map)
solver = Solver(prefix, channels, subdirs, specs_to_add=specs)
unlink_link_transaction = solver.solve_for_transaction(
prune=getattr(args, "prune", False)
)
pfe = unlink_link_transaction.get_pfe()
pfe.execute()
unlink_link_transaction.execute()
|
def install(prefix, specs, args, env, prune=False):
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
new_specs = []
channel_urls = set()
for elem in specs:
if "::" in elem:
channel_urls.add(elem.split("::")[0])
new_specs.append(elem.split("::")[-1])
else:
new_specs.append(elem)
specs = new_specs
channel_urls = list(channel_urls)
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
channel_urls = channel_urls + [
chan for chan in env.channels if chan != "nodefaults"
]
if "nodefaults" not in env.channels:
channel_urls.extend(context.channels)
_channel_priority_map = prioritize_channels(channel_urls)
channel_names = IndexedSet(
Channel(url).canonical_name for url in _channel_priority_map
)
channels = IndexedSet(Channel(cn) for cn in channel_names)
subdirs = IndexedSet(basename(url) for url in _channel_priority_map)
solver = Solver(prefix, channels, subdirs, specs_to_add=specs)
unlink_link_transaction = solver.solve_for_transaction(prune=prune)
pfe = unlink_link_transaction.get_pfe()
pfe.execute()
unlink_link_transaction.execute()
|
https://github.com/conda/conda/issues/5809
|
{
"command":"/home/travis/miniconda/bin/conda-env update",
"conda_info":{
"GID":2000,
"UID":2000,
"_channels":"https://conda.anaconda.org/conda-canary/linux-64
https://conda.anaconda.org/conda-canary/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch",
"_config_files":"/home/travis/.condarc",
"_envs_dirs":"/home/travis/miniconda/envs
/home/travis/.conda/envs",
"_pkgs_dirs":"/home/travis/miniconda/pkgs
/home/travis/.conda/pkgs",
"_rtwro":"writable",
"active_prefix":null,
"active_prefix_name":null,
"channels":[
"https://conda.anaconda.org/conda-canary/linux-64",
"https://conda.anaconda.org/conda-canary/noarch",
"https://repo.continuum.io/pkgs/free/linux-64",
"https://repo.continuum.io/pkgs/free/noarch",
"https://repo.continuum.io/pkgs/r/linux-64",
"https://repo.continuum.io/pkgs/r/noarch",
"https://repo.continuum.io/pkgs/pro/linux-64",
"https://repo.continuum.io/pkgs/pro/noarch"
],
"conda_build_version":"not installed",
"conda_env_version":"4.4.0rc0",
"conda_location":"/home/travis/miniconda/lib/python3.6/site-packages/conda",
"conda_prefix":"/home/travis/miniconda",
"conda_private":false,
"conda_shlvl":-1,
"conda_version":"4.4.0rc0",
"config_files":[
"/home/travis/.condarc"
],
"default_prefix":"/home/travis/miniconda",
"envs":[
],
"envs_dirs":[
"/home/travis/miniconda/envs",
"/home/travis/.conda/envs"
],
"netrc_file":null,
"offline":false,
"pkgs_dirs":[
"/home/travis/miniconda/pkgs",
"/home/travis/.conda/pkgs"
],
"platform":"linux-64",
"python_version":"3.6.1.final.0",
"rc_path":"/home/travis/.condarc",
"requests_version":"2.14.2",
"root_prefix":"/home/travis/miniconda",
"root_writable":true,
"sys_rc_path":"/home/travis/miniconda/.condarc",
"user_agent":"conda/4.4.0rc0 requests/2.14.2 CPython/3.6.1 Linux/4.4.0-83-generic ubuntu/14.04 glibc/2.19",
"user_rc_path":"/home/travis/.condarc"
},
"error":"TypeError(\"_pip_install_via_requirements() got an unexpected keyword argument 'prune'\",)",
"exception_name":"TypeError",
"exception_type":"<class 'TypeError'>",
"traceback":"Traceback (most recent call last):
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda/exceptions.py\", line 653, in __call__
return func(*args, **kwargs)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda_env/cli/main_update.py\", line 107, in execute
installer.install(prefix, specs, args, env, prune=args.prune)
TypeError: _pip_install_via_requirements() got an unexpected keyword argument 'prune'
"
}
|
TypeError
|
def _pip_install_via_requirements(prefix, specs, args, *_, **kwargs):
"""
Installs the pip dependencies in specs using a temporary pip requirements file.
Args
----
prefix: string
The path to the python and pip executables.
specs: iterable of strings
Each element should be a valid pip dependency.
See: https://pip.pypa.io/en/stable/user_guide/#requirements-files
https://pip.pypa.io/en/stable/reference/pip_install/#requirements-file-format
"""
try:
pip_workdir = op.dirname(op.abspath(args.file))
except AttributeError:
pip_workdir = None
requirements = None
try:
# Generate the temporary requirements file
requirements = tempfile.NamedTemporaryFile(
mode="w",
prefix="condaenv.",
suffix=".requirements.txt",
dir=pip_workdir,
delete=False,
)
requirements.write("\n".join(specs))
requirements.close()
# pip command line...
pip_cmd = pip_args(prefix) + ["install", "-r", requirements.name]
# ...run it
process = subprocess.Popen(pip_cmd, cwd=pip_workdir, universal_newlines=True)
process.communicate()
if process.returncode != 0:
raise CondaValueError("pip returned an error")
finally:
# Win/Appveyor does not like it if we use context manager + delete=True.
# So we delete the temporary file in a finally block.
if requirements is not None and op.isfile(requirements.name):
os.remove(requirements.name)
|
def _pip_install_via_requirements(prefix, specs, args, *_):
"""
Installs the pip dependencies in specs using a temporary pip requirements file.
Args
----
prefix: string
The path to the python and pip executables.
specs: iterable of strings
Each element should be a valid pip dependency.
See: https://pip.pypa.io/en/stable/user_guide/#requirements-files
https://pip.pypa.io/en/stable/reference/pip_install/#requirements-file-format
"""
try:
pip_workdir = op.dirname(op.abspath(args.file))
except AttributeError:
pip_workdir = None
requirements = None
try:
# Generate the temporary requirements file
requirements = tempfile.NamedTemporaryFile(
mode="w",
prefix="condaenv.",
suffix=".requirements.txt",
dir=pip_workdir,
delete=False,
)
requirements.write("\n".join(specs))
requirements.close()
# pip command line...
pip_cmd = pip_args(prefix) + ["install", "-r", requirements.name]
# ...run it
process = subprocess.Popen(pip_cmd, cwd=pip_workdir, universal_newlines=True)
process.communicate()
if process.returncode != 0:
raise CondaValueError("pip returned an error")
finally:
# Win/Appveyor does not like it if we use context manager + delete=True.
# So we delete the temporary file in a finally block.
if requirements is not None and op.isfile(requirements.name):
os.remove(requirements.name)
|
https://github.com/conda/conda/issues/5809
|
{
"command":"/home/travis/miniconda/bin/conda-env update",
"conda_info":{
"GID":2000,
"UID":2000,
"_channels":"https://conda.anaconda.org/conda-canary/linux-64
https://conda.anaconda.org/conda-canary/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch",
"_config_files":"/home/travis/.condarc",
"_envs_dirs":"/home/travis/miniconda/envs
/home/travis/.conda/envs",
"_pkgs_dirs":"/home/travis/miniconda/pkgs
/home/travis/.conda/pkgs",
"_rtwro":"writable",
"active_prefix":null,
"active_prefix_name":null,
"channels":[
"https://conda.anaconda.org/conda-canary/linux-64",
"https://conda.anaconda.org/conda-canary/noarch",
"https://repo.continuum.io/pkgs/free/linux-64",
"https://repo.continuum.io/pkgs/free/noarch",
"https://repo.continuum.io/pkgs/r/linux-64",
"https://repo.continuum.io/pkgs/r/noarch",
"https://repo.continuum.io/pkgs/pro/linux-64",
"https://repo.continuum.io/pkgs/pro/noarch"
],
"conda_build_version":"not installed",
"conda_env_version":"4.4.0rc0",
"conda_location":"/home/travis/miniconda/lib/python3.6/site-packages/conda",
"conda_prefix":"/home/travis/miniconda",
"conda_private":false,
"conda_shlvl":-1,
"conda_version":"4.4.0rc0",
"config_files":[
"/home/travis/.condarc"
],
"default_prefix":"/home/travis/miniconda",
"envs":[
],
"envs_dirs":[
"/home/travis/miniconda/envs",
"/home/travis/.conda/envs"
],
"netrc_file":null,
"offline":false,
"pkgs_dirs":[
"/home/travis/miniconda/pkgs",
"/home/travis/.conda/pkgs"
],
"platform":"linux-64",
"python_version":"3.6.1.final.0",
"rc_path":"/home/travis/.condarc",
"requests_version":"2.14.2",
"root_prefix":"/home/travis/miniconda",
"root_writable":true,
"sys_rc_path":"/home/travis/miniconda/.condarc",
"user_agent":"conda/4.4.0rc0 requests/2.14.2 CPython/3.6.1 Linux/4.4.0-83-generic ubuntu/14.04 glibc/2.19",
"user_rc_path":"/home/travis/.condarc"
},
"error":"TypeError(\"_pip_install_via_requirements() got an unexpected keyword argument 'prune'\",)",
"exception_name":"TypeError",
"exception_type":"<class 'TypeError'>",
"traceback":"Traceback (most recent call last):
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda/exceptions.py\", line 653, in __call__
return func(*args, **kwargs)
File \"/home/travis/miniconda/lib/python3.6/site-packages/conda_env/cli/main_update.py\", line 107, in execute
installer.install(prefix, specs, args, env, prune=args.prune)
TypeError: _pip_install_via_requirements() got an unexpected keyword argument 'prune'
"
}
|
TypeError
|
def symlink_conda_hlp(prefix, root_dir, where, symlink_fn):
scripts = ["conda", "activate", "deactivate"]
prefix_where = join(prefix, where)
if not isdir(prefix_where):
os.makedirs(prefix_where)
for f in scripts:
root_file = join(root_dir, where, f)
prefix_file = join(prefix_where, f)
try:
# try to kill stale links if they exist
if os.path.lexists(prefix_file):
os.remove(prefix_file)
# if they're in use, they won't be killed. Skip making new symlink.
if not os.path.lexists(prefix_file):
symlink_fn(root_file, prefix_file)
except (IOError, OSError) as e:
if os.path.lexists(prefix_file) and (
e.errno in (errno.EPERM, errno.EACCES, errno.EROFS, errno.EEXIST)
):
log.debug(
"Cannot symlink {0} to {1}. Ignoring since link already exists.".format(
root_file, prefix_file
)
)
else:
raise
|
def symlink_conda_hlp(prefix, root_dir, where, symlink_fn):
scripts = ["conda", "activate", "deactivate"]
prefix_where = join(prefix, where)
if not isdir(prefix_where):
os.makedirs(prefix_where)
for f in scripts:
root_file = join(root_dir, where, f)
prefix_file = join(prefix_where, f)
try:
# try to kill stale links if they exist
if os.path.lexists(prefix_file):
os.remove(prefix_file)
# if they're in use, they won't be killed. Skip making new symlink.
if not os.path.lexists(prefix_file):
symlink_fn(root_file, prefix_file)
except (IOError, OSError) as e:
if os.path.lexists(prefix_file) and (
e.errno in (errno.EPERM, errno.EACCES, errno.EROFS)
):
log.debug(
"Cannot symlink {0} to {1}. Ignoring since link already exists.".format(
root_file, prefix_file
)
)
else:
raise
|
https://github.com/conda/conda/issues/2837
|
Traceback (most recent call last):
File "/symln_home/anaconda/bin/conda", line 6, in <module>
sys.exit(main())
File "/Users/tomflem/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 48, in main
activate.main()
File "/Users/tomflem/anaconda/lib/python2.7/site-packages/conda/cli/activate.py", line 163, in main
conda.install.symlink_conda(prefix, root_dir, shell)
File "/Users/tomflem/anaconda/lib/python2.7/site-packages/conda/install.py", line 582, in symlink_conda
symlink_conda_hlp(prefix, root_dir, where, symlink_fn)
File "/Users/tomflem/anaconda/lib/python2.7/site-packages/conda/install.py", line 599, in symlink_conda_hlp
symlink_fn(root_file, prefix_file)
OSError: [Errno 17] File exists
|
OSError
|
def configure_parser(sub_parsers):
p = sub_parsers.add_parser(
"update",
formatter_class=RawDescriptionHelpFormatter,
description=description,
help=description,
epilog=example,
)
common.add_parser_prefix(p)
p.add_argument(
"-f",
"--file",
action="store",
help="environment definition (default: environment.yml)",
default="environment.yml",
)
p.add_argument(
"--prune",
action="store_true",
default=False,
help="remove installed packages not defined in environment.yml",
)
p.add_argument(
"-q",
"--quiet",
action="store_true",
default=False,
)
p.add_argument(
"remote_definition",
help="remote environment definition / IPython notebook",
action="store",
default=None,
nargs="?",
)
common.add_parser_json(p)
p.set_defaults(func=execute)
|
def configure_parser(sub_parsers):
p = sub_parsers.add_parser(
"update",
formatter_class=RawDescriptionHelpFormatter,
description=description,
help=description,
epilog=example,
)
p.add_argument(
"-n",
"--name",
action="store",
help="name of environment (in %s)" % os.pathsep.join(config.envs_dirs),
default=None,
)
p.add_argument(
"-f",
"--file",
action="store",
help="environment definition (default: environment.yml)",
default="environment.yml",
)
p.add_argument(
"--prune",
action="store_true",
default=False,
help="remove installed packages not defined in environment.yml",
)
p.add_argument(
"-q",
"--quiet",
action="store_true",
default=False,
)
p.add_argument(
"remote_definition",
help="remote environment definition / IPython notebook",
action="store",
default=None,
nargs="?",
)
common.add_parser_json(p)
p.set_defaults(func=execute)
|
https://github.com/conda/conda/issues/5420
|
conda env update
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.3.20
conda is private : False
conda-env version : 4.3.20
conda-build version : not installed
python version : 3.5.2.final.0
requests version : 2.14.2
root environment : /home/travis/miniconda (writable)
default environment : /home/travis/miniconda
envs directories : /home/travis/miniconda/envs
/home/travis/.conda/envs
package cache : /home/travis/miniconda/pkgs
/home/travis/.conda/pkgs
channel URLs : https://conda.anaconda.org/conda-canary/linux-64
https://conda.anaconda.org/conda-canary/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
config file : /home/travis/.condarc
netrc file : None
offline mode : False
user-agent : conda/4.3.20 requests/2.14.2 CPython/3.5.2 Linux/4.4.0-51-generic debian/jessie/sid glibc/2.19
UID:GID : 1000:1000
`$ /home/travis/miniconda/bin/conda-env update`
Traceback (most recent call last):
File "/home/travis/miniconda/lib/python3.5/site-packages/conda/exceptions.py", line 632, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/travis/miniconda/lib/python3.5/site-packages/conda_env/cli/main_update.py", line 82, in execute
if not (args.name or args.prefix):
AttributeError: 'Namespace' object has no attribute 'prefix'
|
AttributeError
|
def error(self, message):
import re
import subprocess
from .find_commands import find_executable
exc = sys.exc_info()[1]
if exc:
# this is incredibly lame, but argparse stupidly does not expose
# reasonable hooks for customizing error handling
if hasattr(exc, "argument_name"):
argument = self._get_action_from_name(exc.argument_name)
else:
argument = None
if argument and argument.dest == "cmd":
m = re.compile(r"invalid choice: u?'([\w\-]+)'").match(exc.message)
if m:
cmd = m.group(1)
executable = find_executable("conda-" + cmd)
if not executable:
raise CommandNotFoundError(cmd)
args = [find_executable("conda-" + cmd)]
args.extend(sys.argv[2:])
p = subprocess.Popen(args)
try:
p.communicate()
except KeyboardInterrupt:
p.wait()
finally:
sys.exit(p.returncode)
super(ArgumentParser, self).error(message)
|
def error(self, message):
import re
import subprocess
from .find_commands import find_executable
exc = sys.exc_info()[1]
if exc:
# this is incredibly lame, but argparse stupidly does not expose
# reasonable hooks for customizing error handling
if hasattr(exc, "argument_name"):
argument = self._get_action_from_name(exc.argument_name)
else:
argument = None
if argument and argument.dest == "cmd":
m = re.compile(r"invalid choice: '([\w\-]+)'").match(exc.message)
if m:
cmd = m.group(1)
executable = find_executable("conda-" + cmd)
if not executable:
raise CommandNotFoundError(cmd)
args = [find_executable("conda-" + cmd)]
args.extend(sys.argv[2:])
p = subprocess.Popen(args)
try:
p.communicate()
except KeyboardInterrupt:
p.wait()
finally:
sys.exit(p.returncode)
super(ArgumentParser, self).error(message)
|
https://github.com/conda/conda/issues/5346
|
________________________________ test_skeleton_pypi ________________________________
Traceback (most recent call last):
File "/home/dev/code/conda-build/tests/test_published_examples.py", line 15, in test_skeleton_pypi
check_call_env(cmd.split())
File "/home/dev/code/conda-build/conda_build/utils.py", line 670, in check_call_env
return _func_defaulting_env_to_os_environ(subprocess.check_call, *popenargs, **kwargs)
File "/home/dev/code/conda-build/conda_build/utils.py", line 666, in _func_defaulting_env_to_os_environ
return func(_args, **kwargs)
File "/opt/miniconda/lib/python2.7/subprocess.py", line 541, in check_call
raise CalledProcessError(retcode, cmd)
CalledProcessError: Command '['conda', 'skeleton', 'pypi', 'pyinstrument']' returned non-zero exit status 2
------------------------------- Captured stderr call -------------------------------
usage: conda [-h] [-V] command ...
conda: error: argument command: invalid choice: u'skeleton' (choose from u'info', u'help', u'list', u'search', u'create', u'install', u'update', u'upgrade', u'remove', u'uninstall', u'config', u'clean', u'package')
|
CalledProcessError
|
def help(command, shell):
# sys.argv[1] will be ..checkenv in activate if an environment is already
# activated
# get grandparent process name to see which shell we're using
if command in ("..activate", "..checkenv"):
if shell in ["cmd.exe", "powershell.exe"]:
raise CondaSystemExit("""Usage: activate ENV
Adds the 'Scripts' and 'Library\\bin' directory of the environment ENV to the front of PATH.
ENV may either refer to just the name of the environment, or the full
prefix path.""")
else:
raise CondaSystemExit("""Usage: source activate ENV
Adds the 'bin' directory of the environment ENV to the front of PATH.
ENV may either refer to just the name of the environment, or the full
prefix path.""")
elif command == "..deactivate":
if shell in ["cmd.exe", "powershell.exe"]:
raise CondaSystemExit("""Usage: deactivate
Removes the environment prefix, 'Scripts' and 'Library\\bin' directory
of the environment ENV from the front of PATH.""")
else:
raise CondaSystemExit("""Usage: source deactivate
Removes the 'bin' directory of the environment activated with 'source
activate' from PATH. """)
else:
raise CondaSystemExit(
"No help available for command %s" % ensure_text_type(sys.argv[1])
)
|
def help(command, shell):
# sys.argv[1] will be ..checkenv in activate if an environment is already
# activated
# get grandparent process name to see which shell we're using
if command in ("..activate", "..checkenv"):
if shell in ["cmd.exe", "powershell.exe"]:
raise CondaSystemExit("""Usage: activate ENV
Adds the 'Scripts' and 'Library\\bin' directory of the environment ENV to the front of PATH.
ENV may either refer to just the name of the environment, or the full
prefix path.""")
else:
raise CondaSystemExit("""Usage: source activate ENV
Adds the 'bin' directory of the environment ENV to the front of PATH.
ENV may either refer to just the name of the environment, or the full
prefix path.""")
elif command == "..deactivate":
if shell in ["cmd.exe", "powershell.exe"]:
raise CondaSystemExit("""Usage: deactivate
Removes the environment prefix, 'Scripts' and 'Library\\bin' directory
of the environment ENV from the front of PATH.""")
else:
raise CondaSystemExit("""Usage: source deactivate
Removes the 'bin' directory of the environment activated with 'source
activate' from PATH. """)
else:
raise CondaSystemExit("No help available for command %s" % sys.argv[1])
|
https://github.com/conda/conda/issues/5329
|
(root) c:\msys64\home\kfranz\continuum\conda>python -m conda create -n qtcrΞator qt=5.6.2 python=3.6
Fetching package metadata ...........
Solving package specifications: .
Package plan for installation in environment C:\conda-root\envs\qtcrΞator:
The following NEW packages will be INSTALLED:
icu: 57.1-vc14_0 [vc14]
jpeg: 9b-vc14_0 [vc14]
libpng: 1.6.27-vc14_0 [vc14]
openssl: 1.0.2k-vc14_0 [vc14]
pip: 9.0.1-py36_1
python: 3.6.1-2
qt: 5.6.2-vc14_3 [vc14]
setuptools: 27.2.0-py36_1
vs2015_runtime: 14.0.25123-0
wheel: 0.29.0-py36_0
zlib: 1.2.8-vc14_3 [vc14]
Proceed ([y]/n)?
icu-57.1-vc14_ 100% |###############################| Time: 0:00:03 10.44 MB/s
jpeg-9b-vc14_0 100% |###############################| Time: 0:00:00 19.74 MB/s
python-3.6.1-2 100% |###############################| Time: 0:00:03 10.96 MB/s
zlib-1.2.8-vc1 100% |###############################| Time: 0:00:00 0.00 B/s
libpng-1.6.27- 100% |###############################| Time: 0:00:00 10.97 MB/s
qt-5.6.2-vc14_ 100% |###############################| Time: 0:00:05 11.55 MB/s
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.3.18.post13+e7b1a6bf
conda is private : False
conda-env version : 4.3.18.post13+e7b1a6bf
conda-build version : not installed
python version : 3.6.1.final.0
requests version : 2.12.4
root environment : C:\conda-root (writable)
default environment : C:\conda-root
envs directories : C:\conda-root\envs
C:\Users\kfranz\AppData\Local\conda\conda\envs
C:\Users\kfranz\.conda\envs
package cache : C:\conda-root\pkgs
C:\Users\kfranz\AppData\Local\conda\conda\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/win-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch
config file : C:\Users\kfranz\.condarc
offline mode : False
user-agent : conda/4.3.18.post13+e7b1a6bf requests/2.12.4 CPython/3.6.1 Windows/10 Windows/10.0.14393
administrator : unknown
`$ c:\msys64\home\kfranz\continuum\conda\conda\__main__.py create -n qtcrΞator qt=5.6.2 python=3.6`
Traceback (most recent call last):
File "c:\msys64\home\kfranz\continuum\conda\conda\exceptions.py", line 632, in conda_exception_handler
return_value = func(*args, **kwargs)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main.py", line 134, in _main
exit_code = args.func(args, p)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main_create.py", line 68, in execute
install(args, parser, 'create')
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\install.py", line 357, in install
execute_actions(actions, index, verbose=not context.quiet)
File "c:\msys64\home\kfranz\continuum\conda\conda\plan.py", line 830, in execute_actions
execute_instructions(plan, index, verbose)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 75, in __exit__
self.update('exit')
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 104, in update
self.write_changes(last, curr)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 263, in write_changes
write_head(fo)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 27, in write_head
fo.write("# cmd: %s\n" % (' '.join(sys.argv)))
File "C:\conda-root\lib\encodings\cp1252.py", line 19, in encode
return codecs.charmap_encode(input,self.errors,encoding_table)[0]
UnicodeEncodeError: 'charmap' codec can't encode character '\u039e' in position 77: character maps to <undefined>
|
UnicodeEncodeError
|
def main():
from ..base.constants import ROOT_ENV_NAME
sys_argv = tuple(ensure_text_type(s) for s in sys.argv)
if "-h" in sys_argv or "--help" in sys_argv:
# all execution paths sys.exit at end.
help(sys_argv[1], sys_argv[2])
if len(sys_argv) > 2:
shell = sys_argv[2]
else:
shell = ""
if regex.match("^..(?:de|)activate$", sys_argv[1]):
arg_num = len(sys_argv)
if arg_num != 4:
num_expected = 2
if arg_num < 4:
raise TooFewArgumentsError(
num_expected,
arg_num - num_expected,
"{} expected exactly two arguments:\
shell and env name".format(sys_argv[1]),
)
if arg_num > 4:
raise TooManyArgumentsError(
num_expected,
arg_num - num_expected,
sys_argv[2:],
"{} expected exactly two arguments:\
shell and env name".format(sys_argv[1]),
)
if sys_argv[1] == "..activate":
print(get_activate_path(sys_argv[3], shell))
sys.exit(0)
elif sys_argv[1] == "..deactivate.path":
activation_path = get_activate_path(sys_argv[3], shell)
if os.getenv("_CONDA_HOLD"):
new_path = regex.sub(
r"%s(:?)" % regex.escape(activation_path),
r"CONDA_PATH_PLACEHOLDER\1",
os.environ[str("PATH")],
1,
)
else:
new_path = regex.sub(
r"%s(:?)" % regex.escape(activation_path),
r"",
os.environ[str("PATH")],
1,
)
print(new_path)
sys.exit(0)
elif sys_argv[1] == "..checkenv":
if len(sys_argv) < 4:
raise ArgumentError(
"Invalid arguments to checkenv. Need shell and env name/path"
)
if len(sys_argv) > 4:
raise ArgumentError("did not expect more than one argument.")
if sys_argv[3].lower() == ROOT_ENV_NAME.lower():
# no need to check root env and try to install a symlink there
sys.exit(0)
# raise CondaSystemExit
# this should throw an error and exit if the env or path can't be found.
try:
prefix = prefix_from_arg(sys_argv[3], shell)
except ValueError as e:
raise CondaValueError(text_type(e))
# Make sure an env always has the conda symlink
try:
from ..base.context import context
from ..install import symlink_conda
symlink_conda(prefix, context.root_prefix, shell)
except (IOError, OSError) as e:
if e.errno == errno.EPERM or e.errno == errno.EACCES:
msg = (
"Cannot activate environment {0}.\n"
"User does not have write access for conda symlinks.".format(
sys_argv[2]
)
)
raise CondaEnvironmentError(msg)
raise
sys.exit(0)
# raise CondaSystemExit
elif sys_argv[1] == "..changeps1":
from ..base.context import context
path = int(context.changeps1)
else:
# This means there is a bug in main.py
raise CondaValueError("unexpected command")
# This print is actually what sets the PATH or PROMPT variable. The shell
# script gets this value, and finishes the job.
print(path)
|
def main():
from ..base.constants import ROOT_ENV_NAME
if "-h" in sys.argv or "--help" in sys.argv:
# all execution paths sys.exit at end.
help(sys.argv[1], sys.argv[2])
if len(sys.argv) > 2:
shell = sys.argv[2]
else:
shell = ""
if regex.match("^..(?:de|)activate$", sys.argv[1]):
arg_num = len(sys.argv)
if arg_num != 4:
num_expected = 2
if arg_num < 4:
raise TooFewArgumentsError(
num_expected,
arg_num - num_expected,
"{} expected exactly two arguments:\
shell and env name".format(sys.argv[1]),
)
if arg_num > 4:
raise TooManyArgumentsError(
num_expected,
arg_num - num_expected,
sys.argv[2:],
"{} expected exactly two arguments:\
shell and env name".format(sys.argv[1]),
)
if sys.argv[1] == "..activate":
print(get_activate_path(sys.argv[3], shell))
sys.exit(0)
elif sys.argv[1] == "..deactivate.path":
activation_path = get_activate_path(sys.argv[3], shell)
if os.getenv("_CONDA_HOLD"):
new_path = regex.sub(
r"%s(:?)" % regex.escape(activation_path),
r"CONDA_PATH_PLACEHOLDER\1",
os.environ[str("PATH")],
1,
)
else:
new_path = regex.sub(
r"%s(:?)" % regex.escape(activation_path),
r"",
os.environ[str("PATH")],
1,
)
print(new_path)
sys.exit(0)
elif sys.argv[1] == "..checkenv":
if len(sys.argv) < 4:
raise ArgumentError(
"Invalid arguments to checkenv. Need shell and env name/path"
)
if len(sys.argv) > 4:
raise ArgumentError("did not expect more than one argument.")
if sys.argv[3].lower() == ROOT_ENV_NAME.lower():
# no need to check root env and try to install a symlink there
sys.exit(0)
# raise CondaSystemExit
# this should throw an error and exit if the env or path can't be found.
try:
prefix = prefix_from_arg(sys.argv[3], shell)
except ValueError as e:
raise CondaValueError(text_type(e))
# Make sure an env always has the conda symlink
try:
from ..base.context import context
from ..install import symlink_conda
symlink_conda(prefix, context.root_prefix, shell)
except (IOError, OSError) as e:
if e.errno == errno.EPERM or e.errno == errno.EACCES:
msg = (
"Cannot activate environment {0}.\n"
"User does not have write access for conda symlinks.".format(
sys.argv[2]
)
)
raise CondaEnvironmentError(msg)
raise
sys.exit(0)
# raise CondaSystemExit
elif sys.argv[1] == "..changeps1":
from ..base.context import context
path = int(context.changeps1)
else:
# This means there is a bug in main.py
raise CondaValueError("unexpected command")
# This print is actually what sets the PATH or PROMPT variable. The shell
# script gets this value, and finishes the job.
print(path)
|
https://github.com/conda/conda/issues/5329
|
(root) c:\msys64\home\kfranz\continuum\conda>python -m conda create -n qtcrΞator qt=5.6.2 python=3.6
Fetching package metadata ...........
Solving package specifications: .
Package plan for installation in environment C:\conda-root\envs\qtcrΞator:
The following NEW packages will be INSTALLED:
icu: 57.1-vc14_0 [vc14]
jpeg: 9b-vc14_0 [vc14]
libpng: 1.6.27-vc14_0 [vc14]
openssl: 1.0.2k-vc14_0 [vc14]
pip: 9.0.1-py36_1
python: 3.6.1-2
qt: 5.6.2-vc14_3 [vc14]
setuptools: 27.2.0-py36_1
vs2015_runtime: 14.0.25123-0
wheel: 0.29.0-py36_0
zlib: 1.2.8-vc14_3 [vc14]
Proceed ([y]/n)?
icu-57.1-vc14_ 100% |###############################| Time: 0:00:03 10.44 MB/s
jpeg-9b-vc14_0 100% |###############################| Time: 0:00:00 19.74 MB/s
python-3.6.1-2 100% |###############################| Time: 0:00:03 10.96 MB/s
zlib-1.2.8-vc1 100% |###############################| Time: 0:00:00 0.00 B/s
libpng-1.6.27- 100% |###############################| Time: 0:00:00 10.97 MB/s
qt-5.6.2-vc14_ 100% |###############################| Time: 0:00:05 11.55 MB/s
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.3.18.post13+e7b1a6bf
conda is private : False
conda-env version : 4.3.18.post13+e7b1a6bf
conda-build version : not installed
python version : 3.6.1.final.0
requests version : 2.12.4
root environment : C:\conda-root (writable)
default environment : C:\conda-root
envs directories : C:\conda-root\envs
C:\Users\kfranz\AppData\Local\conda\conda\envs
C:\Users\kfranz\.conda\envs
package cache : C:\conda-root\pkgs
C:\Users\kfranz\AppData\Local\conda\conda\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/win-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch
config file : C:\Users\kfranz\.condarc
offline mode : False
user-agent : conda/4.3.18.post13+e7b1a6bf requests/2.12.4 CPython/3.6.1 Windows/10 Windows/10.0.14393
administrator : unknown
`$ c:\msys64\home\kfranz\continuum\conda\conda\__main__.py create -n qtcrΞator qt=5.6.2 python=3.6`
Traceback (most recent call last):
File "c:\msys64\home\kfranz\continuum\conda\conda\exceptions.py", line 632, in conda_exception_handler
return_value = func(*args, **kwargs)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main.py", line 134, in _main
exit_code = args.func(args, p)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main_create.py", line 68, in execute
install(args, parser, 'create')
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\install.py", line 357, in install
execute_actions(actions, index, verbose=not context.quiet)
File "c:\msys64\home\kfranz\continuum\conda\conda\plan.py", line 830, in execute_actions
execute_instructions(plan, index, verbose)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 75, in __exit__
self.update('exit')
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 104, in update
self.write_changes(last, curr)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 263, in write_changes
write_head(fo)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 27, in write_head
fo.write("# cmd: %s\n" % (' '.join(sys.argv)))
File "C:\conda-root\lib\encodings\cp1252.py", line 19, in encode
return codecs.charmap_encode(input,self.errors,encoding_table)[0]
UnicodeEncodeError: 'charmap' codec can't encode character '\u039e' in position 77: character maps to <undefined>
|
UnicodeEncodeError
|
def main(*args):
if not args:
args = sys.argv
args = tuple(_ensure_text_type(s) for s in args)
log.debug("conda.cli.main called with %s", args)
if len(args) > 1:
try:
argv1 = args[1].strip()
if argv1.startswith(".."):
import conda.cli.activate as activate
activate.main()
return
if argv1 in ("activate", "deactivate"):
from ..exceptions import CommandNotFoundError
raise CommandNotFoundError(argv1)
except Exception as e:
from ..exceptions import handle_exception
return handle_exception(e)
from ..exceptions import conda_exception_handler
return conda_exception_handler(_main, *args)
|
def main(*args):
if not args:
args = sys.argv
if not args:
args = sys.argv
log.debug("conda.cli.main called with %s", args)
if len(args) > 1:
try:
argv1 = args[1].strip()
if argv1.startswith(".."):
import conda.cli.activate as activate
activate.main()
return
if argv1 in ("activate", "deactivate"):
from ..exceptions import CommandNotFoundError
raise CommandNotFoundError(argv1)
except Exception as e:
from ..exceptions import handle_exception
return handle_exception(e)
from ..exceptions import conda_exception_handler
return conda_exception_handler(_main, *args)
|
https://github.com/conda/conda/issues/5329
|
(root) c:\msys64\home\kfranz\continuum\conda>python -m conda create -n qtcrΞator qt=5.6.2 python=3.6
Fetching package metadata ...........
Solving package specifications: .
Package plan for installation in environment C:\conda-root\envs\qtcrΞator:
The following NEW packages will be INSTALLED:
icu: 57.1-vc14_0 [vc14]
jpeg: 9b-vc14_0 [vc14]
libpng: 1.6.27-vc14_0 [vc14]
openssl: 1.0.2k-vc14_0 [vc14]
pip: 9.0.1-py36_1
python: 3.6.1-2
qt: 5.6.2-vc14_3 [vc14]
setuptools: 27.2.0-py36_1
vs2015_runtime: 14.0.25123-0
wheel: 0.29.0-py36_0
zlib: 1.2.8-vc14_3 [vc14]
Proceed ([y]/n)?
icu-57.1-vc14_ 100% |###############################| Time: 0:00:03 10.44 MB/s
jpeg-9b-vc14_0 100% |###############################| Time: 0:00:00 19.74 MB/s
python-3.6.1-2 100% |###############################| Time: 0:00:03 10.96 MB/s
zlib-1.2.8-vc1 100% |###############################| Time: 0:00:00 0.00 B/s
libpng-1.6.27- 100% |###############################| Time: 0:00:00 10.97 MB/s
qt-5.6.2-vc14_ 100% |###############################| Time: 0:00:05 11.55 MB/s
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.3.18.post13+e7b1a6bf
conda is private : False
conda-env version : 4.3.18.post13+e7b1a6bf
conda-build version : not installed
python version : 3.6.1.final.0
requests version : 2.12.4
root environment : C:\conda-root (writable)
default environment : C:\conda-root
envs directories : C:\conda-root\envs
C:\Users\kfranz\AppData\Local\conda\conda\envs
C:\Users\kfranz\.conda\envs
package cache : C:\conda-root\pkgs
C:\Users\kfranz\AppData\Local\conda\conda\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/win-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch
config file : C:\Users\kfranz\.condarc
offline mode : False
user-agent : conda/4.3.18.post13+e7b1a6bf requests/2.12.4 CPython/3.6.1 Windows/10 Windows/10.0.14393
administrator : unknown
`$ c:\msys64\home\kfranz\continuum\conda\conda\__main__.py create -n qtcrΞator qt=5.6.2 python=3.6`
Traceback (most recent call last):
File "c:\msys64\home\kfranz\continuum\conda\conda\exceptions.py", line 632, in conda_exception_handler
return_value = func(*args, **kwargs)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main.py", line 134, in _main
exit_code = args.func(args, p)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main_create.py", line 68, in execute
install(args, parser, 'create')
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\install.py", line 357, in install
execute_actions(actions, index, verbose=not context.quiet)
File "c:\msys64\home\kfranz\continuum\conda\conda\plan.py", line 830, in execute_actions
execute_instructions(plan, index, verbose)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 75, in __exit__
self.update('exit')
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 104, in update
self.write_changes(last, curr)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 263, in write_changes
write_head(fo)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 27, in write_head
fo.write("# cmd: %s\n" % (' '.join(sys.argv)))
File "C:\conda-root\lib\encodings\cp1252.py", line 19, in encode
return codecs.charmap_encode(input,self.errors,encoding_table)[0]
UnicodeEncodeError: 'charmap' codec can't encode character '\u039e' in position 77: character maps to <undefined>
|
UnicodeEncodeError
|
def __init__(self, message, **kwargs):
command = " ".join(ensure_text_type(s) for s in sys.argv)
super(CommandArgumentError, self).__init__(message, command=command, **kwargs)
|
def __init__(self, message, **kwargs):
command = " ".join(sys.argv)
super(CommandArgumentError, self).__init__(message, command=command, **kwargs)
|
https://github.com/conda/conda/issues/5329
|
(root) c:\msys64\home\kfranz\continuum\conda>python -m conda create -n qtcrΞator qt=5.6.2 python=3.6
Fetching package metadata ...........
Solving package specifications: .
Package plan for installation in environment C:\conda-root\envs\qtcrΞator:
The following NEW packages will be INSTALLED:
icu: 57.1-vc14_0 [vc14]
jpeg: 9b-vc14_0 [vc14]
libpng: 1.6.27-vc14_0 [vc14]
openssl: 1.0.2k-vc14_0 [vc14]
pip: 9.0.1-py36_1
python: 3.6.1-2
qt: 5.6.2-vc14_3 [vc14]
setuptools: 27.2.0-py36_1
vs2015_runtime: 14.0.25123-0
wheel: 0.29.0-py36_0
zlib: 1.2.8-vc14_3 [vc14]
Proceed ([y]/n)?
icu-57.1-vc14_ 100% |###############################| Time: 0:00:03 10.44 MB/s
jpeg-9b-vc14_0 100% |###############################| Time: 0:00:00 19.74 MB/s
python-3.6.1-2 100% |###############################| Time: 0:00:03 10.96 MB/s
zlib-1.2.8-vc1 100% |###############################| Time: 0:00:00 0.00 B/s
libpng-1.6.27- 100% |###############################| Time: 0:00:00 10.97 MB/s
qt-5.6.2-vc14_ 100% |###############################| Time: 0:00:05 11.55 MB/s
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.3.18.post13+e7b1a6bf
conda is private : False
conda-env version : 4.3.18.post13+e7b1a6bf
conda-build version : not installed
python version : 3.6.1.final.0
requests version : 2.12.4
root environment : C:\conda-root (writable)
default environment : C:\conda-root
envs directories : C:\conda-root\envs
C:\Users\kfranz\AppData\Local\conda\conda\envs
C:\Users\kfranz\.conda\envs
package cache : C:\conda-root\pkgs
C:\Users\kfranz\AppData\Local\conda\conda\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/win-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch
config file : C:\Users\kfranz\.condarc
offline mode : False
user-agent : conda/4.3.18.post13+e7b1a6bf requests/2.12.4 CPython/3.6.1 Windows/10 Windows/10.0.14393
administrator : unknown
`$ c:\msys64\home\kfranz\continuum\conda\conda\__main__.py create -n qtcrΞator qt=5.6.2 python=3.6`
Traceback (most recent call last):
File "c:\msys64\home\kfranz\continuum\conda\conda\exceptions.py", line 632, in conda_exception_handler
return_value = func(*args, **kwargs)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main.py", line 134, in _main
exit_code = args.func(args, p)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main_create.py", line 68, in execute
install(args, parser, 'create')
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\install.py", line 357, in install
execute_actions(actions, index, verbose=not context.quiet)
File "c:\msys64\home\kfranz\continuum\conda\conda\plan.py", line 830, in execute_actions
execute_instructions(plan, index, verbose)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 75, in __exit__
self.update('exit')
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 104, in update
self.write_changes(last, curr)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 263, in write_changes
write_head(fo)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 27, in write_head
fo.write("# cmd: %s\n" % (' '.join(sys.argv)))
File "C:\conda-root\lib\encodings\cp1252.py", line 19, in encode
return codecs.charmap_encode(input,self.errors,encoding_table)[0]
UnicodeEncodeError: 'charmap' codec can't encode character '\u039e' in position 77: character maps to <undefined>
|
UnicodeEncodeError
|
def print_unexpected_error_message(e):
# bomb = "\U0001F4A3 "
# explosion = "\U0001F4A5 "
# fire = "\U0001F525 "
# print("%s %s %s" % (3*bomb, 3*explosion, 3*fire))
traceback = format_exc()
stderrlogger = getLogger("stderr")
from .base.context import context
if context.json:
from .cli.common import stdout_json
stdout_json(dict(error=traceback))
else:
message = """\
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
"""
stderrlogger.info(message)
command = " ".join(ensure_text_type(s) for s in sys.argv)
if " info" not in command:
from .cli.main_info import get_info_dict, get_main_info_str
stderrlogger.info(get_main_info_str(get_info_dict()))
stderrlogger.info("`$ {0}`".format(command))
stderrlogger.info("\n")
stderrlogger.info("\n".join(" " + line for line in traceback.splitlines()))
|
def print_unexpected_error_message(e):
# bomb = "\U0001F4A3 "
# explosion = "\U0001F4A5 "
# fire = "\U0001F525 "
# print("%s %s %s" % (3*bomb, 3*explosion, 3*fire))
traceback = format_exc()
stderrlogger = getLogger("stderr")
from .base.context import context
if context.json:
from .cli.common import stdout_json
stdout_json(dict(error=traceback))
else:
message = """\
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
"""
stderrlogger.info(message)
command = " ".join(sys.argv)
if " info" not in command:
from .cli.main_info import get_info_dict, get_main_info_str
stderrlogger.info(get_main_info_str(get_info_dict()))
stderrlogger.info("`$ {0}`".format(command))
stderrlogger.info("\n")
stderrlogger.info("\n".join(" " + line for line in traceback.splitlines()))
|
https://github.com/conda/conda/issues/5329
|
(root) c:\msys64\home\kfranz\continuum\conda>python -m conda create -n qtcrΞator qt=5.6.2 python=3.6
Fetching package metadata ...........
Solving package specifications: .
Package plan for installation in environment C:\conda-root\envs\qtcrΞator:
The following NEW packages will be INSTALLED:
icu: 57.1-vc14_0 [vc14]
jpeg: 9b-vc14_0 [vc14]
libpng: 1.6.27-vc14_0 [vc14]
openssl: 1.0.2k-vc14_0 [vc14]
pip: 9.0.1-py36_1
python: 3.6.1-2
qt: 5.6.2-vc14_3 [vc14]
setuptools: 27.2.0-py36_1
vs2015_runtime: 14.0.25123-0
wheel: 0.29.0-py36_0
zlib: 1.2.8-vc14_3 [vc14]
Proceed ([y]/n)?
icu-57.1-vc14_ 100% |###############################| Time: 0:00:03 10.44 MB/s
jpeg-9b-vc14_0 100% |###############################| Time: 0:00:00 19.74 MB/s
python-3.6.1-2 100% |###############################| Time: 0:00:03 10.96 MB/s
zlib-1.2.8-vc1 100% |###############################| Time: 0:00:00 0.00 B/s
libpng-1.6.27- 100% |###############################| Time: 0:00:00 10.97 MB/s
qt-5.6.2-vc14_ 100% |###############################| Time: 0:00:05 11.55 MB/s
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.3.18.post13+e7b1a6bf
conda is private : False
conda-env version : 4.3.18.post13+e7b1a6bf
conda-build version : not installed
python version : 3.6.1.final.0
requests version : 2.12.4
root environment : C:\conda-root (writable)
default environment : C:\conda-root
envs directories : C:\conda-root\envs
C:\Users\kfranz\AppData\Local\conda\conda\envs
C:\Users\kfranz\.conda\envs
package cache : C:\conda-root\pkgs
C:\Users\kfranz\AppData\Local\conda\conda\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/win-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch
config file : C:\Users\kfranz\.condarc
offline mode : False
user-agent : conda/4.3.18.post13+e7b1a6bf requests/2.12.4 CPython/3.6.1 Windows/10 Windows/10.0.14393
administrator : unknown
`$ c:\msys64\home\kfranz\continuum\conda\conda\__main__.py create -n qtcrΞator qt=5.6.2 python=3.6`
Traceback (most recent call last):
File "c:\msys64\home\kfranz\continuum\conda\conda\exceptions.py", line 632, in conda_exception_handler
return_value = func(*args, **kwargs)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main.py", line 134, in _main
exit_code = args.func(args, p)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main_create.py", line 68, in execute
install(args, parser, 'create')
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\install.py", line 357, in install
execute_actions(actions, index, verbose=not context.quiet)
File "c:\msys64\home\kfranz\continuum\conda\conda\plan.py", line 830, in execute_actions
execute_instructions(plan, index, verbose)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 75, in __exit__
self.update('exit')
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 104, in update
self.write_changes(last, curr)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 263, in write_changes
write_head(fo)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 27, in write_head
fo.write("# cmd: %s\n" % (' '.join(sys.argv)))
File "C:\conda-root\lib\encodings\cp1252.py", line 19, in encode
return codecs.charmap_encode(input,self.errors,encoding_table)[0]
UnicodeEncodeError: 'charmap' codec can't encode character '\u039e' in position 77: character maps to <undefined>
|
UnicodeEncodeError
|
def write_head(fo):
fo.write("==> %s <==\n" % time.strftime("%Y-%m-%d %H:%M:%S"))
fo.write("# cmd: %s\n" % (" ".join(ensure_text_type(s) for s in sys.argv)))
|
def write_head(fo):
fo.write("==> %s <==\n" % time.strftime("%Y-%m-%d %H:%M:%S"))
fo.write("# cmd: %s\n" % (" ".join(sys.argv)))
|
https://github.com/conda/conda/issues/5329
|
(root) c:\msys64\home\kfranz\continuum\conda>python -m conda create -n qtcrΞator qt=5.6.2 python=3.6
Fetching package metadata ...........
Solving package specifications: .
Package plan for installation in environment C:\conda-root\envs\qtcrΞator:
The following NEW packages will be INSTALLED:
icu: 57.1-vc14_0 [vc14]
jpeg: 9b-vc14_0 [vc14]
libpng: 1.6.27-vc14_0 [vc14]
openssl: 1.0.2k-vc14_0 [vc14]
pip: 9.0.1-py36_1
python: 3.6.1-2
qt: 5.6.2-vc14_3 [vc14]
setuptools: 27.2.0-py36_1
vs2015_runtime: 14.0.25123-0
wheel: 0.29.0-py36_0
zlib: 1.2.8-vc14_3 [vc14]
Proceed ([y]/n)?
icu-57.1-vc14_ 100% |###############################| Time: 0:00:03 10.44 MB/s
jpeg-9b-vc14_0 100% |###############################| Time: 0:00:00 19.74 MB/s
python-3.6.1-2 100% |###############################| Time: 0:00:03 10.96 MB/s
zlib-1.2.8-vc1 100% |###############################| Time: 0:00:00 0.00 B/s
libpng-1.6.27- 100% |###############################| Time: 0:00:00 10.97 MB/s
qt-5.6.2-vc14_ 100% |###############################| Time: 0:00:05 11.55 MB/s
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.3.18.post13+e7b1a6bf
conda is private : False
conda-env version : 4.3.18.post13+e7b1a6bf
conda-build version : not installed
python version : 3.6.1.final.0
requests version : 2.12.4
root environment : C:\conda-root (writable)
default environment : C:\conda-root
envs directories : C:\conda-root\envs
C:\Users\kfranz\AppData\Local\conda\conda\envs
C:\Users\kfranz\.conda\envs
package cache : C:\conda-root\pkgs
C:\Users\kfranz\AppData\Local\conda\conda\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/win-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch
config file : C:\Users\kfranz\.condarc
offline mode : False
user-agent : conda/4.3.18.post13+e7b1a6bf requests/2.12.4 CPython/3.6.1 Windows/10 Windows/10.0.14393
administrator : unknown
`$ c:\msys64\home\kfranz\continuum\conda\conda\__main__.py create -n qtcrΞator qt=5.6.2 python=3.6`
Traceback (most recent call last):
File "c:\msys64\home\kfranz\continuum\conda\conda\exceptions.py", line 632, in conda_exception_handler
return_value = func(*args, **kwargs)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main.py", line 134, in _main
exit_code = args.func(args, p)
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\main_create.py", line 68, in execute
install(args, parser, 'create')
File "c:\msys64\home\kfranz\continuum\conda\conda\cli\install.py", line 357, in install
execute_actions(actions, index, verbose=not context.quiet)
File "c:\msys64\home\kfranz\continuum\conda\conda\plan.py", line 830, in execute_actions
execute_instructions(plan, index, verbose)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 75, in __exit__
self.update('exit')
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 104, in update
self.write_changes(last, curr)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 263, in write_changes
write_head(fo)
File "c:\msys64\home\kfranz\continuum\conda\conda\history.py", line 27, in write_head
fo.write("# cmd: %s\n" % (' '.join(sys.argv)))
File "C:\conda-root\lib\encodings\cp1252.py", line 19, in encode
return codecs.charmap_encode(input,self.errors,encoding_table)[0]
UnicodeEncodeError: 'charmap' codec can't encode character '\u039e' in position 77: character maps to <undefined>
|
UnicodeEncodeError
|
def build_message(specs):
binstar_spec = next((spec for spec in specs if isinstance(spec, BinstarSpec)), None)
if binstar_spec:
return binstar_spec.msg
else:
return "\n".join([s.msg for s in specs if s.msg is not None])
|
def build_message(specs):
return "\n".join([s.msg for s in specs if s.msg is not None])
|
https://github.com/conda/conda/issues/3689
|
Windows PowerShell
Copyright (C) 2009 Microsoft Corporation. All rights reserved.
PS C:\Users\tsnyder> which conda
C:\Users\tsnyder\Miniconda3\Scripts\conda.EXE
PS C:\Users\tsnyder> conda list
# packages in environment at C:\Users\tsnyder\Miniconda3:
#
conda 4.1.11 py35_0
conda-env 2.5.2 py35_0
console_shortcut 0.1.1 py35_1
menuinst 1.4.1 py35_0
pip 8.1.2 py35_0
pycosat 0.6.1 py35_1
pycrypto 2.6.1 py35_4
python 3.5.2 0
pyyaml 3.11 py35_4
requests 2.10.0 py35_0
ruamel_yaml 0.11.14 py35_0
setuptools 23.0.0 py35_0
vs2015_runtime 14.0.25123 0
wheel 0.29.0 py35_0
PS C:\Users\tsnyder> conda update --all
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment C:\Users\tsnyder\Miniconda3:
The following packages will be downloaded:
package | build
---------------------------|-----------------
conda-env-2.6.0 | 0 498 B
menuinst-1.4.2 | py35_0 107 KB
pyyaml-3.12 | py35_0 118 KB
requests-2.11.1 | py35_0 665 KB
setuptools-27.2.0 | py35_1 761 KB
conda-4.2.9 | py35_0 428 KB
------------------------------------------------------------
Total: 2.0 MB
The following packages will be UPDATED:
conda: 4.1.11-py35_0 --> 4.2.9-py35_0
conda-env: 2.5.2-py35_0 --> 2.6.0-0
menuinst: 1.4.1-py35_0 --> 1.4.2-py35_0
pyyaml: 3.11-py35_4 --> 3.12-py35_0
requests: 2.10.0-py35_0 --> 2.11.1-py35_0
setuptools: 23.0.0-py35_0 --> 27.2.0-py35_1
Proceed ([y]/n)?
menuinst-1.4.2 100% |###############################| Time: 0:00:00 456.48 kB/s
Fetching packages ...
conda-env-2.6. 100% |###############################| Time: 0:00:00 71.13 kB/s
pyyaml-3.12-py 100% |###############################| Time: 0:00:00 541.10 kB/s
requests-2.11. 100% |###############################| Time: 0:00:00 885.09 kB/s
setuptools-27. 100% |###############################| Time: 0:00:00 976.23 kB/s
conda-4.2.9-py 100% |###############################| Time: 0:00:00 875.95 kB/s
Extracting packages ...
[ COMPLETE ]|##################################################| 100%
Unlinking packages ...
[ COMPLETE ]|##################################################| 100%
Linking packages ...
[ COMPLETE ]|##################################################| 100%
PS C:\Users\tsnyder> conda env create -h
usage: conda-env-script.py create [-h] [-f FILE] [-n ENVIRONMENT | -p PATH]
[-q] [--force] [--json] [--debug]
[--verbose]
[remote_definition]
Create an environment based on an environment file
Options:
positional arguments:
remote_definition remote environment definition / IPython notebook
optional arguments:
-h, --help Show this help message and exit.
-f FILE, --file FILE environment definition file (default: environment.yml)
-n ENVIRONMENT, --name ENVIRONMENT
Name of environment (in
C:\Users\tsnyder\Miniconda3\envs).
-p PATH, --prefix PATH
Full path to environment prefix (default:
C:\Users\tsnyder\Miniconda3).
-q, --quiet
--force force creation of environment (removing a previously
existing environment of the same name).
--json Report all output as json. Suitable for using conda
programmatically.
--debug Show debug output.
--verbose, -v Use once for info, twice for debug.
examples:
conda env create
conda env create -n name
conda env create vader/deathstar
conda env create -f=/path/to/environment.yml
conda env create -f=/path/to/requirements.txt -n deathstar
conda env create -f=/path/to/requirements.txt -p /home/user/software/deathstar
PS C:\Users\tsnyder> conda env create tsnyder/python_training_2016_10
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.2.9
conda is private : False
conda-env version : 4.2.9
conda-build version : not installed
python version : 3.5.2.final.0
requests version : 2.11.1
root environment : C:\Users\tsnyder\Miniconda3 (writable)
default environment : C:\Users\tsnyder\Miniconda3
envs directories : C:\Users\tsnyder\Miniconda3\envs
package cache : C:\Users\tsnyder\Miniconda3\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64/
https://repo.continuum.io/pkgs/free/noarch/
https://repo.continuum.io/pkgs/pro/win-64/
https://repo.continuum.io/pkgs/pro/noarch/
https://repo.continuum.io/pkgs/msys2/win-64/
https://repo.continuum.io/pkgs/msys2/noarch/
config file : None
offline mode : False
`$ C:\Users\tsnyder\Miniconda3\Scripts\conda-env-script.py create tsnyder/python_training_2016_10`
Traceback (most recent call last):
File "C:\Users\tsnyder\Miniconda3\lib\site-packages\conda\exceptions.py", line 473, in conda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Users\tsnyder\Miniconda3\lib\site-packages\conda_env\cli\main_create.py", line 81, in execute
directory=os.getcwd())
File "C:\Users\tsnyder\Miniconda3\lib\site-packages\conda_env\specs\__init__.py", line 23, in detect
raise SpecNotFound(build_message(specs))
conda_env.exceptions.SpecNotFound: Runtime error: Please install binstar
Please install nbformat:
conda install nbformat
Conda Env Exception: environment.yml file not found
There is no requirements.txt
|
conda_env.exceptions.SpecNotFound
|
def can_handle(self):
"""
Validates loader can process environment definition.
:return: True or False
"""
# TODO: log information about trying to find the package in binstar.org
if self.valid_name():
if self.binstar is None:
self.msg = (
"Anaconda Client is required to interact with anaconda.org or an "
"Anaconda API. Please run `conda install anaconda-client`."
)
return False
return self.package is not None and self.valid_package()
return False
|
def can_handle(self):
"""
Validates loader can process environment definition.
:return: True or False
"""
# TODO: log information about trying to find the package in binstar.org
if self.valid_name():
if self.binstar is None:
self.msg = "Please install binstar"
return False
return self.package is not None and self.valid_package()
return False
|
https://github.com/conda/conda/issues/3689
|
Windows PowerShell
Copyright (C) 2009 Microsoft Corporation. All rights reserved.
PS C:\Users\tsnyder> which conda
C:\Users\tsnyder\Miniconda3\Scripts\conda.EXE
PS C:\Users\tsnyder> conda list
# packages in environment at C:\Users\tsnyder\Miniconda3:
#
conda 4.1.11 py35_0
conda-env 2.5.2 py35_0
console_shortcut 0.1.1 py35_1
menuinst 1.4.1 py35_0
pip 8.1.2 py35_0
pycosat 0.6.1 py35_1
pycrypto 2.6.1 py35_4
python 3.5.2 0
pyyaml 3.11 py35_4
requests 2.10.0 py35_0
ruamel_yaml 0.11.14 py35_0
setuptools 23.0.0 py35_0
vs2015_runtime 14.0.25123 0
wheel 0.29.0 py35_0
PS C:\Users\tsnyder> conda update --all
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment C:\Users\tsnyder\Miniconda3:
The following packages will be downloaded:
package | build
---------------------------|-----------------
conda-env-2.6.0 | 0 498 B
menuinst-1.4.2 | py35_0 107 KB
pyyaml-3.12 | py35_0 118 KB
requests-2.11.1 | py35_0 665 KB
setuptools-27.2.0 | py35_1 761 KB
conda-4.2.9 | py35_0 428 KB
------------------------------------------------------------
Total: 2.0 MB
The following packages will be UPDATED:
conda: 4.1.11-py35_0 --> 4.2.9-py35_0
conda-env: 2.5.2-py35_0 --> 2.6.0-0
menuinst: 1.4.1-py35_0 --> 1.4.2-py35_0
pyyaml: 3.11-py35_4 --> 3.12-py35_0
requests: 2.10.0-py35_0 --> 2.11.1-py35_0
setuptools: 23.0.0-py35_0 --> 27.2.0-py35_1
Proceed ([y]/n)?
menuinst-1.4.2 100% |###############################| Time: 0:00:00 456.48 kB/s
Fetching packages ...
conda-env-2.6. 100% |###############################| Time: 0:00:00 71.13 kB/s
pyyaml-3.12-py 100% |###############################| Time: 0:00:00 541.10 kB/s
requests-2.11. 100% |###############################| Time: 0:00:00 885.09 kB/s
setuptools-27. 100% |###############################| Time: 0:00:00 976.23 kB/s
conda-4.2.9-py 100% |###############################| Time: 0:00:00 875.95 kB/s
Extracting packages ...
[ COMPLETE ]|##################################################| 100%
Unlinking packages ...
[ COMPLETE ]|##################################################| 100%
Linking packages ...
[ COMPLETE ]|##################################################| 100%
PS C:\Users\tsnyder> conda env create -h
usage: conda-env-script.py create [-h] [-f FILE] [-n ENVIRONMENT | -p PATH]
[-q] [--force] [--json] [--debug]
[--verbose]
[remote_definition]
Create an environment based on an environment file
Options:
positional arguments:
remote_definition remote environment definition / IPython notebook
optional arguments:
-h, --help Show this help message and exit.
-f FILE, --file FILE environment definition file (default: environment.yml)
-n ENVIRONMENT, --name ENVIRONMENT
Name of environment (in
C:\Users\tsnyder\Miniconda3\envs).
-p PATH, --prefix PATH
Full path to environment prefix (default:
C:\Users\tsnyder\Miniconda3).
-q, --quiet
--force force creation of environment (removing a previously
existing environment of the same name).
--json Report all output as json. Suitable for using conda
programmatically.
--debug Show debug output.
--verbose, -v Use once for info, twice for debug.
examples:
conda env create
conda env create -n name
conda env create vader/deathstar
conda env create -f=/path/to/environment.yml
conda env create -f=/path/to/requirements.txt -n deathstar
conda env create -f=/path/to/requirements.txt -p /home/user/software/deathstar
PS C:\Users\tsnyder> conda env create tsnyder/python_training_2016_10
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.2.9
conda is private : False
conda-env version : 4.2.9
conda-build version : not installed
python version : 3.5.2.final.0
requests version : 2.11.1
root environment : C:\Users\tsnyder\Miniconda3 (writable)
default environment : C:\Users\tsnyder\Miniconda3
envs directories : C:\Users\tsnyder\Miniconda3\envs
package cache : C:\Users\tsnyder\Miniconda3\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64/
https://repo.continuum.io/pkgs/free/noarch/
https://repo.continuum.io/pkgs/pro/win-64/
https://repo.continuum.io/pkgs/pro/noarch/
https://repo.continuum.io/pkgs/msys2/win-64/
https://repo.continuum.io/pkgs/msys2/noarch/
config file : None
offline mode : False
`$ C:\Users\tsnyder\Miniconda3\Scripts\conda-env-script.py create tsnyder/python_training_2016_10`
Traceback (most recent call last):
File "C:\Users\tsnyder\Miniconda3\lib\site-packages\conda\exceptions.py", line 473, in conda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Users\tsnyder\Miniconda3\lib\site-packages\conda_env\cli\main_create.py", line 81, in execute
directory=os.getcwd())
File "C:\Users\tsnyder\Miniconda3\lib\site-packages\conda_env\specs\__init__.py", line 23, in detect
raise SpecNotFound(build_message(specs))
conda_env.exceptions.SpecNotFound: Runtime error: Please install binstar
Please install nbformat:
conda install nbformat
Conda Env Exception: environment.yml file not found
There is no requirements.txt
|
conda_env.exceptions.SpecNotFound
|
def execute(args, parser):
from ..base.context import context
from .common import stdout_json
prefix = context.prefix_w_legacy_search
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
if args.revisions:
from ..history import History
h = History(prefix)
if isfile(h.path):
if not context.json:
h.print_log()
else:
stdout_json(h.object_log())
else:
from ..exceptions import FileNotFoundError
raise FileNotFoundError(h.path)
return
if args.explicit:
print_explicit(prefix, args.md5)
return
if args.canonical:
format = "canonical"
elif args.export:
format = "export"
else:
format = "human"
if context.json:
format = "canonical"
exitcode = print_packages(
prefix,
regex,
format,
piplist=args.pip,
json=context.json,
show_channel_urls=context.show_channel_urls,
)
return exitcode
|
def execute(args, parser):
from ..base.context import context
from .common import stdout_json
prefix = context.prefix_w_legacy_search
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
if args.revisions:
from ..history import History
h = History(prefix)
if isfile(h.path):
if not context.json:
h.print_log()
else:
stdout_json(h.object_log())
else:
from ..exceptions import CondaFileNotFoundError
raise CondaFileNotFoundError(h.path)
return
if args.explicit:
print_explicit(prefix, args.md5)
return
if args.canonical:
format = "canonical"
elif args.export:
format = "export"
else:
format = "human"
if context.json:
format = "canonical"
exitcode = print_packages(
prefix,
regex,
format,
piplist=args.pip,
json=context.json,
show_channel_urls=context.show_channel_urls,
)
return exitcode
|
https://github.com/conda/conda/issues/4968
|
Traceback (most recent call last):
File "/conda/lib/python3.6/site-packages/conda/core/package_cache.py", line 502, in _execute_action
action.execute()
File "/conda/lib/python3.6/site-packages/conda/core/path_actions.py", line 739, in execute
source_md5sum = compute_md5sum(source_path)
File "/conda/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 59, in compute_md5sum
raise CondaFileNotFoundError(file_full_path)
conda.exceptions.CondaFileNotFoundError: <unprintable CondaFileNotFoundError object>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/conda/lib/python3.6/site-packages/conda/exceptions.py", line 592, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/conda/lib/python3.6/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/conda/lib/python3.6/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/conda/lib/python3.6/site-packages/conda/cli/install.py", line 200, in install
explicit(args.packages, prefix, verbose=not context.quiet)
File "/conda/lib/python3.6/site-packages/conda/misc.py", line 90, in explicit
pfe.execute()
File "/conda/lib/python3.6/site-packages/conda/core/package_cache.py", line 491, in execute
self._execute_action(action)
File "/conda/lib/python3.6/site-packages/conda/core/package_cache.py", line 507, in _execute_action
exceptions.append(CondaError(repr(e)))
File "/conda/lib/python3.6/site-packages/conda/__init__.py", line 43, in __repr__
return '%s: %s\n' % (self.__class__.__name__, text_type(self))
File "/conda/lib/python3.6/site-packages/conda/__init__.py", line 48, in __str__
return text_type(self.message % self._kwargs)
TypeError: must be real number, not dict
|
conda.exceptions.CondaFileNotFoundError
|
def compute_md5sum(file_full_path):
if not isfile(file_full_path):
raise FileNotFoundError(file_full_path)
hash_md5 = hashlib.md5()
with open(file_full_path, "rb") as fh:
for chunk in iter(partial(fh.read, 8192), b""):
hash_md5.update(chunk)
return hash_md5.hexdigest()
|
def compute_md5sum(file_full_path):
if not isfile(file_full_path):
raise CondaFileNotFoundError(file_full_path)
hash_md5 = hashlib.md5()
with open(file_full_path, "rb") as fh:
for chunk in iter(partial(fh.read, 8192), b""):
hash_md5.update(chunk)
return hash_md5.hexdigest()
|
https://github.com/conda/conda/issues/4968
|
Traceback (most recent call last):
File "/conda/lib/python3.6/site-packages/conda/core/package_cache.py", line 502, in _execute_action
action.execute()
File "/conda/lib/python3.6/site-packages/conda/core/path_actions.py", line 739, in execute
source_md5sum = compute_md5sum(source_path)
File "/conda/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 59, in compute_md5sum
raise CondaFileNotFoundError(file_full_path)
conda.exceptions.CondaFileNotFoundError: <unprintable CondaFileNotFoundError object>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/conda/lib/python3.6/site-packages/conda/exceptions.py", line 592, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/conda/lib/python3.6/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/conda/lib/python3.6/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/conda/lib/python3.6/site-packages/conda/cli/install.py", line 200, in install
explicit(args.packages, prefix, verbose=not context.quiet)
File "/conda/lib/python3.6/site-packages/conda/misc.py", line 90, in explicit
pfe.execute()
File "/conda/lib/python3.6/site-packages/conda/core/package_cache.py", line 491, in execute
self._execute_action(action)
File "/conda/lib/python3.6/site-packages/conda/core/package_cache.py", line 507, in _execute_action
exceptions.append(CondaError(repr(e)))
File "/conda/lib/python3.6/site-packages/conda/__init__.py", line 43, in __repr__
return '%s: %s\n' % (self.__class__.__name__, text_type(self))
File "/conda/lib/python3.6/site-packages/conda/__init__.py", line 48, in __str__
return text_type(self.message % self._kwargs)
TypeError: must be real number, not dict
|
conda.exceptions.CondaFileNotFoundError
|
def explicit(
specs, prefix, verbose=False, force_extract=True, index_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
fetch_recs = {}
for spec in specs:
if spec == "@EXPLICIT":
continue
if not is_url(spec):
spec = unquote(path_to_url(expand(spec)))
# parse URL
m = url_pat.match(spec)
if m is None:
raise ParseError("Could not parse explicit URL: %s" % spec)
url_p, fn, md5sum = m.group("url_p"), m.group("fn"), m.group("md5")
url = join_url(url_p, fn)
# url_p is everything but the tarball_basename and the md5sum
# If the path points to a file in the package cache, we need to use
# the dist name that corresponds to that package. The MD5 may not
# match, but we will let PFE below worry about that
dist = None
if url.startswith("file:/"):
path = win_path_ok(url_to_path(url))
if dirname(path) in context.pkgs_dirs:
if not exists(path):
raise FileNotFoundError(path)
pc_entry = PackageCache.tarball_file_in_cache(path)
dist = pc_entry.dist
url = dist.to_url() or pc_entry.get_urls_txt_value()
md5sum = md5sum or pc_entry.md5sum
dist = dist or Dist(url)
fetch_recs[dist] = {"md5": md5sum, "url": url}
# perform any necessary fetches and extractions
if verbose:
from .console import setup_verbose_handlers
setup_verbose_handlers()
link_dists = tuple(iterkeys(fetch_recs))
pfe = ProgressiveFetchExtract(fetch_recs, link_dists)
pfe.execute()
# dists could have been updated with more accurate urls
# TODO: I'm stuck here
# Now get the index---but the only index we need is the package cache
index = {}
_supplement_index_with_cache(index, ())
# unlink any installed packages with same package name
link_names = {index[d]["name"] for d in link_dists}
actions[UNLINK].extend(
d for d, r in iteritems(linked_data(prefix)) if r["name"] in link_names
)
# need to get the install order right, especially to install python in the prefix
# before python noarch packages
r = Resolve(index)
actions[LINK].extend(link_dists)
actions[LINK] = r.dependency_sort(
{r.package_name(dist): dist for dist in actions[LINK]}
)
actions["ACTION"] = "EXPLICIT"
execute_actions(actions, index, verbose=verbose)
return actions
|
def explicit(
specs, prefix, verbose=False, force_extract=True, index_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
fetch_recs = {}
for spec in specs:
if spec == "@EXPLICIT":
continue
if not is_url(spec):
spec = unquote(path_to_url(expand(spec)))
# parse URL
m = url_pat.match(spec)
if m is None:
raise ParseError("Could not parse explicit URL: %s" % spec)
url_p, fn, md5sum = m.group("url_p"), m.group("fn"), m.group("md5")
url = join_url(url_p, fn)
# url_p is everything but the tarball_basename and the md5sum
# If the path points to a file in the package cache, we need to use
# the dist name that corresponds to that package. The MD5 may not
# match, but we will let PFE below worry about that
dist = None
if url.startswith("file:/"):
path = win_path_ok(url_to_path(url))
if dirname(path) in context.pkgs_dirs:
if not exists(path):
raise CondaFileNotFoundError(path)
pc_entry = PackageCache.tarball_file_in_cache(path)
dist = pc_entry.dist
url = dist.to_url() or pc_entry.get_urls_txt_value()
md5sum = md5sum or pc_entry.md5sum
dist = dist or Dist(url)
fetch_recs[dist] = {"md5": md5sum, "url": url}
# perform any necessary fetches and extractions
if verbose:
from .console import setup_verbose_handlers
setup_verbose_handlers()
link_dists = tuple(iterkeys(fetch_recs))
pfe = ProgressiveFetchExtract(fetch_recs, link_dists)
pfe.execute()
# dists could have been updated with more accurate urls
# TODO: I'm stuck here
# Now get the index---but the only index we need is the package cache
index = {}
_supplement_index_with_cache(index, ())
# unlink any installed packages with same package name
link_names = {index[d]["name"] for d in link_dists}
actions[UNLINK].extend(
d for d, r in iteritems(linked_data(prefix)) if r["name"] in link_names
)
# need to get the install order right, especially to install python in the prefix
# before python noarch packages
r = Resolve(index)
actions[LINK].extend(link_dists)
actions[LINK] = r.dependency_sort(
{r.package_name(dist): dist for dist in actions[LINK]}
)
actions["ACTION"] = "EXPLICIT"
execute_actions(actions, index, verbose=verbose)
return actions
|
https://github.com/conda/conda/issues/4968
|
Traceback (most recent call last):
File "/conda/lib/python3.6/site-packages/conda/core/package_cache.py", line 502, in _execute_action
action.execute()
File "/conda/lib/python3.6/site-packages/conda/core/path_actions.py", line 739, in execute
source_md5sum = compute_md5sum(source_path)
File "/conda/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 59, in compute_md5sum
raise CondaFileNotFoundError(file_full_path)
conda.exceptions.CondaFileNotFoundError: <unprintable CondaFileNotFoundError object>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/conda/lib/python3.6/site-packages/conda/exceptions.py", line 592, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/conda/lib/python3.6/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/conda/lib/python3.6/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/conda/lib/python3.6/site-packages/conda/cli/install.py", line 200, in install
explicit(args.packages, prefix, verbose=not context.quiet)
File "/conda/lib/python3.6/site-packages/conda/misc.py", line 90, in explicit
pfe.execute()
File "/conda/lib/python3.6/site-packages/conda/core/package_cache.py", line 491, in execute
self._execute_action(action)
File "/conda/lib/python3.6/site-packages/conda/core/package_cache.py", line 507, in _execute_action
exceptions.append(CondaError(repr(e)))
File "/conda/lib/python3.6/site-packages/conda/__init__.py", line 43, in __repr__
return '%s: %s\n' % (self.__class__.__name__, text_type(self))
File "/conda/lib/python3.6/site-packages/conda/__init__.py", line 48, in __str__
return text_type(self.message % self._kwargs)
TypeError: must be real number, not dict
|
conda.exceptions.CondaFileNotFoundError
|
def create_from_dists(cls, index, target_prefix, unlink_dists, link_dists):
# This constructor method helps to patch into the 'plan' framework
lnkd_pkg_data = (load_meta(target_prefix, dist) for dist in unlink_dists)
# TODO: figure out if this filter shouldn't be an assert not None
linked_packages_data_to_unlink = tuple(lpd for lpd in lnkd_pkg_data if lpd)
log.debug(
"instantiating UnlinkLinkTransaction with\n"
" target_prefix: %s\n"
" unlink_dists:\n"
" %s\n"
" link_dists:\n"
" %s\n",
target_prefix,
"\n ".join(text_type(d) for d in unlink_dists),
"\n ".join(text_type(d) for d in link_dists),
)
pkg_dirs_to_link = tuple(
PackageCache.get_entry_to_link(dist).extracted_package_dir
for dist in link_dists
)
assert all(pkg_dirs_to_link)
packages_info_to_link = tuple(
read_package_info(index[dist], pkg_dir)
for dist, pkg_dir in zip(link_dists, pkg_dirs_to_link)
)
return UnlinkLinkTransaction(
target_prefix, linked_packages_data_to_unlink, packages_info_to_link
)
|
def create_from_dists(cls, index, target_prefix, unlink_dists, link_dists):
# This constructor method helps to patch into the 'plan' framework
linked_packages_data_to_unlink = tuple(
load_meta(target_prefix, dist) for dist in unlink_dists
)
log.debug(
"instantiating UnlinkLinkTransaction with\n"
" target_prefix: %s\n"
" unlink_dists:\n"
" %s\n"
" link_dists:\n"
" %s\n",
target_prefix,
"\n ".join(text_type(d) for d in unlink_dists),
"\n ".join(text_type(d) for d in link_dists),
)
pkg_dirs_to_link = tuple(
PackageCache.get_entry_to_link(dist).extracted_package_dir
for dist in link_dists
)
assert all(pkg_dirs_to_link)
packages_info_to_link = tuple(
read_package_info(index[dist], pkg_dir)
for dist, pkg_dir in zip(link_dists, pkg_dirs_to_link)
)
return UnlinkLinkTransaction(
target_prefix, linked_packages_data_to_unlink, packages_info_to_link
)
|
https://github.com/conda/conda/issues/4974
|
Traceback (most recent call last):
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/exceptions.py", line 591, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/cli/main_update.py", line 65, in execute
install(args, parser, 'update')
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/cli/install.py", line 359, in install
execute_actions(actions, index, verbose=not context.quiet)
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/plan.py", line 800, in execute_actions
execute_instructions(plan, index, verbose)
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/instructions.py", line 247, in execute_instructions
cmd(state, arg)
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/instructions.py", line 108, in UNLINKLINKTRANSACTION_CMD
txn.execute()
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/core/link.py", line 262, in execute
self.verify()
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/core/link.py", line 241, in verify
self.prepare()
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/core/link.py", line 163, in prepare
for lnkd_pkg_data in self.linked_packages_data_to_unlink)
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/core/link.py", line 163, in <genexpr>
for lnkd_pkg_data in self.linked_packages_data_to_unlink)
File "/Users/luisaalanizcastillo/anaconda/lib/python3.6/site-packages/conda/core/link.py", line 65, in make_unlink_actions
for trgt in linked_package_data.files)
AttributeError: 'NoneType' object has no attribute 'files'
|
AttributeError
|
def execute_config(args, parser):
json_warnings = []
json_get = {}
if args.show_sources:
if context.json:
print(
json.dumps(
context.collect_all(),
sort_keys=True,
indent=2,
separators=(",", ": "),
)
)
else:
lines = []
for source, reprs in iteritems(context.collect_all()):
lines.append("==> %s <==" % source)
lines.extend(format_dict(reprs))
lines.append("")
print("\n".join(lines))
return
if args.show:
from collections import OrderedDict
d = OrderedDict(
(key, getattr(context, key)) for key in context.list_parameters()
)
if context.json:
print(
json.dumps(
d,
sort_keys=True,
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
)
else:
# coerce channels
d["custom_channels"] = {
k: text_type(v).replace(
k, ""
) # TODO: the replace here isn't quite right # NOQA
for k, v in iteritems(d["custom_channels"])
}
# TODO: custom_multichannels needs better formatting
d["custom_multichannels"] = {
k: json.dumps([text_type(c) for c in chnls])
for k, chnls in iteritems(d["custom_multichannels"])
}
print("\n".join(format_dict(d)))
context.validate_configuration()
return
if args.describe:
paramater_names = context.list_parameters()
if context.json:
print(
json.dumps(
[context.describe_parameter(name) for name in paramater_names],
sort_keys=True,
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
)
else:
def clean_element_type(element_types):
_types = set()
for et in element_types:
_types.add("str") if isinstance(et, string_types) else _types.add(
"%s" % et
)
return tuple(sorted(_types))
for name in paramater_names:
details = context.describe_parameter(name)
aliases = details["aliases"]
string_delimiter = details.get("string_delimiter")
element_types = details["element_types"]
if details["parameter_type"] == "primitive":
print(
"%s (%s)" % (name, ", ".join(clean_element_type(element_types)))
)
else:
print(
"%s (%s: %s)"
% (
name,
details["parameter_type"],
", ".join(clean_element_type(element_types)),
)
)
def_str = " default: %s" % json.dumps(
details["default_value"],
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
print("\n ".join(def_str.split("\n")))
if aliases:
print(" aliases: %s" % ", ".join(aliases))
if string_delimiter:
print(" string delimiter: '%s'" % string_delimiter)
print("\n ".join(wrap(" " + details["description"], 70)))
print()
return
if args.validate:
context.validate_all()
return
if args.system:
rc_path = sys_rc_path
elif args.env:
if "CONDA_PREFIX" in os.environ:
rc_path = join(os.environ["CONDA_PREFIX"], ".condarc")
else:
rc_path = user_rc_path
elif args.file:
rc_path = args.file
else:
rc_path = user_rc_path
# read existing condarc
if os.path.exists(rc_path):
with open(rc_path, "r") as fh:
rc_config = yaml_load(fh) or {}
else:
rc_config = {}
# Get
if args.get is not None:
context.validate_all()
if args.get == []:
args.get = sorted(rc_config.keys())
for key in args.get:
if key not in rc_list_keys + rc_bool_keys + rc_string_keys:
if key not in rc_other:
message = "unknown key %s" % key
if not context.json:
print(message, file=sys.stderr)
else:
json_warnings.append(message)
continue
if key not in rc_config:
continue
if context.json:
json_get[key] = rc_config[key]
continue
if isinstance(rc_config[key], (bool, string_types)):
print("--set", key, rc_config[key])
else: # assume the key is a list-type
# Note, since conda config --add prepends, these are printed in
# the reverse order so that entering them in this order will
# recreate the same file
items = rc_config.get(key, [])
numitems = len(items)
for q, item in enumerate(reversed(items)):
# Use repr so that it can be pasted back in to conda config --add
if key == "channels" and q in (0, numitems - 1):
print(
"--add",
key,
repr(item),
" # lowest priority" if q == 0 else " # highest priority",
)
else:
print("--add", key, repr(item))
# prepend, append, add
for arg, prepend in zip((args.prepend, args.append), (True, False)):
sequence_parameters = [
p
for p in context.list_parameters()
if context.describe_parameter(p)["parameter_type"] == "sequence"
]
for key, item in arg:
if key == "channels" and key not in rc_config:
rc_config[key] = ["defaults"]
if key not in sequence_parameters:
raise CondaValueError(
"Key '%s' is not a known sequence parameter." % key
)
if not isinstance(rc_config.get(key, []), list):
bad = rc_config[key].__class__.__name__
raise CouldntParseError("key %r should be a list, not %s." % (key, bad))
if key == "default_channels" and rc_path != sys_rc_path:
msg = "'default_channels' is only configurable for system installs"
raise NotImplementedError(msg)
arglist = rc_config.setdefault(key, [])
if item in arglist:
# Right now, all list keys should not contain duplicates
message = "Warning: '%s' already in '%s' list, moving to the %s" % (
item,
key,
"top" if prepend else "bottom",
)
arglist = rc_config[key] = [p for p in arglist if p != item]
if not context.json:
print(message, file=sys.stderr)
else:
json_warnings.append(message)
arglist.insert(0 if prepend else len(arglist), item)
# Set
for key, item in args.set:
primitive_parameters = [
p
for p in context.list_parameters()
if context.describe_parameter(p)["parameter_type"] == "primitive"
]
if key not in primitive_parameters:
raise CondaValueError("Key '%s' is not a known primitive parameter." % key)
value = context.typify_parameter(key, item)
rc_config[key] = value
# Remove
for key, item in args.remove:
if key not in rc_config:
if key != "channels":
raise CondaKeyError(key, "key %r is not in the config file" % key)
rc_config[key] = ["defaults"]
if item not in rc_config[key]:
raise CondaKeyError(
key, "%r is not in the %r key of the config file" % (item, key)
)
rc_config[key] = [i for i in rc_config[key] if i != item]
# Remove Key
for (key,) in args.remove_key:
if key not in rc_config:
raise CondaKeyError(key, "key %r is not in the config file" % key)
del rc_config[key]
# config.rc_keys
if not args.get:
try:
with open(rc_path, "w") as rc:
rc.write(yaml_dump(rc_config))
except (IOError, OSError) as e:
raise CondaError(
"Cannot write to condarc file at %s\nCaused by %r" % (rc_path, e)
)
if context.json:
stdout_json_success(rc_path=rc_path, warnings=json_warnings, get=json_get)
return
|
def execute_config(args, parser):
json_warnings = []
json_get = {}
if args.show_sources:
if context.json:
print(
json.dumps(
context.collect_all(),
sort_keys=True,
indent=2,
separators=(",", ": "),
)
)
else:
lines = []
for source, reprs in iteritems(context.collect_all()):
lines.append("==> %s <==" % source)
lines.extend(format_dict(reprs))
lines.append("")
print("\n".join(lines))
return
if args.show:
from collections import OrderedDict
d = OrderedDict(
(key, getattr(context, key)) for key in context.list_parameters()
)
if context.json:
print(
json.dumps(
d,
sort_keys=True,
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
)
else:
# coerce channels
d["custom_channels"] = {
k: text_type(v).replace(
k, ""
) # TODO: the replace here isn't quite right # NOQA
for k, v in iteritems(d["custom_channels"])
}
# TODO: custom_multichannels needs better formatting
d["custom_multichannels"] = {
k: json.dumps([text_type(c) for c in chnls])
for k, chnls in iteritems(d["custom_multichannels"])
}
print("\n".join(format_dict(d)))
context.validate_configuration()
return
if args.describe:
paramater_names = context.list_parameters()
if context.json:
print(
json.dumps(
[context.describe_parameter(name) for name in paramater_names],
sort_keys=True,
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
)
else:
def clean_element_type(element_types):
_types = set()
for et in element_types:
_types.add("str") if isinstance(et, string_types) else _types.add(
"%s" % et
)
return tuple(sorted(_types))
for name in paramater_names:
details = context.describe_parameter(name)
aliases = details["aliases"]
string_delimiter = details.get("string_delimiter")
element_types = details["element_types"]
if details["parameter_type"] == "primitive":
print(
"%s (%s)" % (name, ", ".join(clean_element_type(element_types)))
)
else:
print(
"%s (%s: %s)"
% (
name,
details["parameter_type"],
", ".join(clean_element_type(element_types)),
)
)
def_str = " default: %s" % json.dumps(
details["default_value"],
indent=2,
separators=(",", ": "),
cls=EntityEncoder,
)
print("\n ".join(def_str.split("\n")))
if aliases:
print(" aliases: %s" % ", ".join(aliases))
if string_delimiter:
print(" string delimiter: '%s'" % string_delimiter)
print("\n ".join(wrap(" " + details["description"], 70)))
print()
return
if args.validate:
context.validate_all()
return
if args.system:
rc_path = sys_rc_path
elif args.env:
if "CONDA_PREFIX" in os.environ:
rc_path = join(os.environ["CONDA_PREFIX"], ".condarc")
else:
rc_path = user_rc_path
elif args.file:
rc_path = args.file
else:
rc_path = user_rc_path
# read existing condarc
if os.path.exists(rc_path):
with open(rc_path, "r") as fh:
rc_config = yaml_load(fh) or {}
else:
rc_config = {}
# Get
if args.get is not None:
context.validate_all()
if args.get == []:
args.get = sorted(rc_config.keys())
for key in args.get:
if key not in rc_list_keys + rc_bool_keys + rc_string_keys:
if key not in rc_other:
message = "unknown key %s" % key
if not context.json:
print(message, file=sys.stderr)
else:
json_warnings.append(message)
continue
if key not in rc_config:
continue
if context.json:
json_get[key] = rc_config[key]
continue
if isinstance(rc_config[key], (bool, string_types)):
print("--set", key, rc_config[key])
else: # assume the key is a list-type
# Note, since conda config --add prepends, these are printed in
# the reverse order so that entering them in this order will
# recreate the same file
items = rc_config.get(key, [])
numitems = len(items)
for q, item in enumerate(reversed(items)):
# Use repr so that it can be pasted back in to conda config --add
if key == "channels" and q in (0, numitems - 1):
print(
"--add",
key,
repr(item),
" # lowest priority" if q == 0 else " # highest priority",
)
else:
print("--add", key, repr(item))
# prepend, append, add
for arg, prepend in zip((args.prepend, args.append), (True, False)):
sequence_parameters = [
p
for p in context.list_parameters()
if context.describe_parameter(p)["parameter_type"] == "sequence"
]
for key, item in arg:
if key == "channels" and key not in rc_config:
rc_config[key] = ["defaults"]
if key not in sequence_parameters:
raise CondaValueError(
"Key '%s' is not a known sequence parameter." % key
)
if not isinstance(rc_config.get(key, []), list):
bad = rc_config[key].__class__.__name__
raise CouldntParseError("key %r should be a list, not %s." % (key, bad))
if key == "default_channels" and rc_path != sys_rc_path:
msg = "'default_channels' is only configurable for system installs"
raise NotImplementedError(msg)
arglist = rc_config.setdefault(key, [])
if item in arglist:
# Right now, all list keys should not contain duplicates
message = "Warning: '%s' already in '%s' list, moving to the %s" % (
item,
key,
"top" if prepend else "bottom",
)
arglist = rc_config[key] = [p for p in arglist if p != item]
if not context.json:
print(message, file=sys.stderr)
else:
json_warnings.append(message)
arglist.insert(0 if prepend else len(arglist), item)
# Set
for key, item in args.set:
primitive_parameters = [
p
for p in context.list_parameters()
if context.describe_parameter(p)["parameter_type"] == "primitive"
]
if key not in primitive_parameters:
raise CondaValueError("Key '%s' is not a known primitive parameter." % key)
value = context.typify_parameter(key, item)
rc_config[key] = value
# Remove
for key, item in args.remove:
if key not in rc_config:
if key != "channels":
raise CondaKeyError(key, "key %r is not in the config file" % key)
rc_config[key] = ["defaults"]
if item not in rc_config[key]:
raise CondaKeyError(
key, "%r is not in the %r key of the config file" % (item, key)
)
rc_config[key] = [i for i in rc_config[key] if i != item]
# Remove Key
for (key,) in args.remove_key:
if key not in rc_config:
raise CondaKeyError(key, "key %r is not in the config file" % key)
del rc_config[key]
# config.rc_keys
if not args.get:
with open(rc_path, "w") as rc:
rc.write(yaml_dump(rc_config))
if context.json:
stdout_json_success(rc_path=rc_path, warnings=json_warnings, get=json_get)
return
|
https://github.com/conda/conda/issues/598
|
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/opt/anaconda/bin/conda", line 5, in <module>
sys.exit(main())
File "/opt/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 179, in main
args.func(args, p)
File "/opt/anaconda/lib/python2.7/site-packages/conda/cli/main_config.py", line 339, in execute
with open(rc_path, 'w') as rc:
IOError: [Errno 13] Permission denied: '/opt/anaconda/.condarc'
|
IOError
|
def _merge(self, matches):
# get matches up to and including first important_match
# but if no important_match, then all matches are important_matches
relevant_matches_and_values = tuple(
(match, match.value(self)) for match in self._first_important_matches(matches)
)
for match, value in relevant_matches_and_values:
if not isinstance(value, tuple):
raise InvalidTypeError(
self.name,
value,
match.source,
value.__class__.__name__,
self._type.__name__,
)
# get individual lines from important_matches that were marked important
# these will be prepended to the final result
def get_marked_lines(match, marker, parameter_obj):
return (
tuple(
line
for line, flag in zip(
match.value(parameter_obj), match.valueflags(parameter_obj)
)
if flag is marker
)
if match
else ()
)
top_lines = concat(
get_marked_lines(m, ParameterFlag.top, self)
for m, _ in relevant_matches_and_values
)
# also get lines that were marked as bottom, but reverse the match order so that lines
# coming earlier will ultimately be last
bottom_lines = concat(
get_marked_lines(m, ParameterFlag.bottom, self)
for m, _ in reversed(relevant_matches_and_values)
)
# now, concat all lines, while reversing the matches
# reverse because elements closer to the end of search path take precedence
all_lines = concat(v for _, v in reversed(relevant_matches_and_values))
# stack top_lines + all_lines, then de-dupe
top_deduped = tuple(unique(concatv(top_lines, all_lines)))
# take the top-deduped lines, reverse them, and concat with reversed bottom_lines
# this gives us the reverse of the order we want, but almost there
# NOTE: for a line value marked both top and bottom, the bottom marker will win out
# for the top marker to win out, we'd need one additional de-dupe step
bottom_deduped = unique(
concatv(reversed(tuple(bottom_lines)), reversed(top_deduped))
)
# just reverse, and we're good to go
return tuple(reversed(tuple(bottom_deduped)))
|
def _merge(self, matches):
# get matches up to and including first important_match
# but if no important_match, then all matches are important_matches
relevant_matches = self._first_important_matches(matches)
# get individual lines from important_matches that were marked important
# these will be prepended to the final result
def get_marked_lines(match, marker, parameter_obj):
return (
tuple(
line
for line, flag in zip(
match.value(parameter_obj), match.valueflags(parameter_obj)
)
if flag is marker
)
if match
else ()
)
top_lines = concat(
get_marked_lines(m, ParameterFlag.top, self) for m in relevant_matches
)
# also get lines that were marked as bottom, but reverse the match order so that lines
# coming earlier will ultimately be last
bottom_lines = concat(
get_marked_lines(m, ParameterFlag.bottom, self)
for m in reversed(relevant_matches)
)
# now, concat all lines, while reversing the matches
# reverse because elements closer to the end of search path take precedence
all_lines = concat(m.value(self) for m in reversed(relevant_matches))
# stack top_lines + all_lines, then de-dupe
top_deduped = tuple(unique(concatv(top_lines, all_lines)))
# take the top-deduped lines, reverse them, and concat with reversed bottom_lines
# this gives us the reverse of the order we want, but almost there
# NOTE: for a line value marked both top and bottom, the bottom marker will win out
# for the top marker to win out, we'd need one additional de-dupe step
bottom_deduped = unique(
concatv(reversed(tuple(bottom_lines)), reversed(top_deduped))
)
# just reverse, and we're good to go
return tuple(reversed(tuple(bottom_deduped)))
|
https://github.com/conda/conda/issues/5189
|
(test) [hulk@ranganork conda]# conda update conda
Traceback (most recent call last):
File "/root/conda/conda/exceptions.py", line 632, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/root/conda/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/root/conda/conda/cli/main_update.py", line 65, in execute
install(args, parser, 'update')
File "/root/conda/conda/cli/install.py", line 128, in install
context.validate_configuration()
File "/root/conda/conda/common/configuration.py", line 844, in validate_configuration
raise_errors(tuple(chain.from_iterable((errors, post_errors))))
File "/root/conda/conda/common/configuration.py", line 842, in <genexpr>
for name in self.parameter_names)
File "/root/conda/conda/common/configuration.py", line 835, in _collect_validation_error
func(*args, **kwargs)
File "/root/conda/conda/common/configuration.py", line 448, in __get__
result = typify_data_structure(self._merge(matches) if matches else self.default,
File "/root/conda/conda/common/configuration.py", line 596, in _merge
top_deduped = tuple(unique(concatv(top_lines, all_lines)))
File "/root/conda/conda/_vendor/toolz/itertoolz.py", line 209, in unique
for item in seq:
File "/root/conda/conda/common/configuration.py", line 584, in <genexpr>
top_lines = concat(get_marked_lines(m, ParameterFlag.top, self) for m in relevant_matches)
File "/root/conda/conda/common/configuration.py", line 583, in get_marked_lines
if flag is marker) if match else ()
TypeError: zip argument #2 must support iteration
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/conda/envs/test/bin/conda", line 11, in <module>
load_entry_point('conda', 'console_scripts', 'conda')()
File "/root/conda/conda/cli/main.py", line 162, in main
return conda_exception_handler(_main, *args)
File "/root/conda/conda/exceptions.py", line 636, in conda_exception_handler
return handle_exception(e)
File "/root/conda/conda/exceptions.py", line 626, in handle_exception
print_unexpected_error_message(e)
File "/root/conda/conda/exceptions.py", line 588, in print_unexpected_error_message
stderrlogger.info(get_main_info_str(get_info_dict()))
File "/root/conda/conda/cli/main_info.py", line 196, in get_info_dict
channels = list(prioritize_channels(context.channels).keys())
File "/root/conda/conda/base/context.py", line 448, in channels
return self._channels
File "/root/conda/conda/common/configuration.py", line 448, in __get__
result = typify_data_structure(self._merge(matches) if matches else self.default,
File "/root/conda/conda/common/configuration.py", line 596, in _merge
top_deduped = tuple(unique(concatv(top_lines, all_lines)))
File "/root/conda/conda/_vendor/toolz/itertoolz.py", line 209, in unique
for item in seq:
File "/root/conda/conda/common/configuration.py", line 584, in <genexpr>
top_lines = concat(get_marked_lines(m, ParameterFlag.top, self) for m in relevant_matches)
File "/root/conda/conda/common/configuration.py", line 583, in get_marked_lines
if flag is marker) if match else ()
TypeError: zip argument #2 must support iteration
|
TypeError
|
def __init__(
self, parameter_name, parameter_value, source, wrong_type, valid_types, msg=None
):
self.wrong_type = wrong_type
self.valid_types = valid_types
if msg is None:
msg = "Parameter %s = %r declared in %s has type %s.\nValid types:\n%s" % (
parameter_name,
parameter_value,
source,
wrong_type,
pretty_list(valid_types),
)
super(InvalidTypeError, self).__init__(
parameter_name, parameter_value, source, msg=msg
)
|
def __init__(
self, parameter_name, parameter_value, source, wrong_type, valid_types, msg=None
):
self.wrong_type = wrong_type
self.valid_types = valid_types
if msg is None:
msg = "Parameter %s = %r declared in %s has type %s.\nValid types: %s." % (
parameter_name,
parameter_value,
source,
wrong_type,
pretty_list(valid_types),
)
super(InvalidTypeError, self).__init__(
parameter_name, parameter_value, source, msg=msg
)
|
https://github.com/conda/conda/issues/5184
|
`$ C:\Users\<username>\AppData\Local\Continuum\Anaconda3\Scripts\conda-script.py updat
e`
Traceback (most recent call last):
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\cli\main.py", line 134, in _main
exit_code = args.func(args, p)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\cli\main_update.py", line 65, in execute
install(args, parser, 'update')
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\cli\install.py", line 130, in install
context.validate_configuration()
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 838, in validate_configuration
raise_errors(tuple(chain.from_iterable((errors, post_errors))))
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 836, in <genexpr>
for name in self.parameter_names)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 829, in _collect_validation_error
func(*args, **kwargs)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 447, in __get__
result = typify_data_structure(self._merge(matches) if matches else self
.default,
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 664, in _merge
for match in relevant_matches)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 664, in <genexpr>
for match in relevant_matches)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\compat.py", line 71, in iteritems
return iter(d.items(**kw))
AttributeError: 'str' object has no attribute 'items'
|
AttributeError
|
def _merge(self, matches):
# get matches up to and including first important_match
# but if no important_match, then all matches are important_matches
relevant_matches_and_values = tuple(
(match, match.value(self)) for match in self._first_important_matches(matches)
)
for match, value in relevant_matches_and_values:
if not isinstance(value, Mapping):
raise InvalidTypeError(
self.name,
value,
match.source,
value.__class__.__name__,
self._type.__name__,
)
# mapkeys with important matches
def key_is_important(match, key):
return match.valueflags(self).get(key) is ParameterFlag.final
important_maps = tuple(
dict((k, v) for k, v in iteritems(match_value) if key_is_important(match, k))
for match, match_value in relevant_matches_and_values
)
# dump all matches in a dict
# then overwrite with important matches
return merge(
concatv((v for _, v in relevant_matches_and_values), reversed(important_maps))
)
|
def _merge(self, matches):
# get matches up to and including first important_match
# but if no important_match, then all matches are important_matches
relevant_matches = self._first_important_matches(matches)
# mapkeys with important matches
def key_is_important(match, key):
return match.valueflags(self).get(key) is ParameterFlag.final
important_maps = tuple(
dict(
(k, v)
for k, v in iteritems(match.value(self))
if key_is_important(match, k)
)
for match in relevant_matches
)
# dump all matches in a dict
# then overwrite with important matches
return merge(
concatv((m.value(self) for m in relevant_matches), reversed(important_maps))
)
|
https://github.com/conda/conda/issues/5184
|
`$ C:\Users\<username>\AppData\Local\Continuum\Anaconda3\Scripts\conda-script.py updat
e`
Traceback (most recent call last):
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\cli\main.py", line 134, in _main
exit_code = args.func(args, p)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\cli\main_update.py", line 65, in execute
install(args, parser, 'update')
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\cli\install.py", line 130, in install
context.validate_configuration()
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 838, in validate_configuration
raise_errors(tuple(chain.from_iterable((errors, post_errors))))
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 836, in <genexpr>
for name in self.parameter_names)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 829, in _collect_validation_error
func(*args, **kwargs)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 447, in __get__
result = typify_data_structure(self._merge(matches) if matches else self
.default,
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 664, in _merge
for match in relevant_matches)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\configuration.py", line 664, in <genexpr>
for match in relevant_matches)
File "C:\Users\<username>\AppData\Local\Continuum\Anaconda3\lib\site-packages\co
nda\common\compat.py", line 71, in iteritems
return iter(d.items(**kw))
AttributeError: 'str' object has no attribute 'items'
|
AttributeError
|
def add_username_and_pass_to_url(url, username, passwd):
url_parts = parse_url(url)._asdict()
url_parts["auth"] = username + ":" + quote(passwd, "")
return Url(**url_parts).url
|
def add_username_and_pass_to_url(url, username, passwd):
url_obj = parse_url(url)
url_obj.auth = username + ":" + quote(passwd, "")
return url_obj.url
|
https://github.com/conda/conda/issues/3531
|
C:\>conda search scikit-learn
https proxy username: john.doe
Password:
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.2.7
conda is private : False
conda-env version : 4.2.7
conda-build version : not installed
python version : 3.5.2.final.0
requests version : 2.11.1
root environment : C:\Miniconda3 (writable)
default environment : C:\Miniconda3
envs directories : C:\Miniconda3\envs
package cache : C:\Miniconda3\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64/
https://repo.continuum.io/pkgs/free/noarch/
https://repo.continuum.io/pkgs/pro/win-64/
https://repo.continuum.io/pkgs/pro/noarch/
https://repo.continuum.io/pkgs/msys2/win-64/
https://repo.continuum.io/pkgs/msys2/noarch/
config file : C:\Users\john.doe\.condarc
offline mode : False
`$ C:\Miniconda3\Scripts\conda-script.py search scikit-learn`
Traceback (most recent call last):
File "C:\Miniconda3\lib\site-packages\requests\packages\urllib3\connectionpool.py", line 589, in urlopen
self._prepare_proxy(conn)
File "C:\Miniconda3\lib\site-packages\requests\packages\urllib3\connectionpool.py", line 797, in _prepare_proxy
conn.connect()
File "C:\Miniconda3\lib\site-packages\requests\packages\urllib3\connection.py", line 267, in connect
self._tunnel()
File "C:\Miniconda3\lib\http\client.py", line 832, in _tunnel
message.strip()))
OSError: Tunnel connection failed: 407 Proxy Authentication Required
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Miniconda3\lib\site-packages\requests\adapters.py", line 423, in send
timeout=timeout
File "C:\Miniconda3\lib\site-packages\requests\packages\urllib3\connectionpool.py", line 668, in urlopen
release_conn=release_conn, **response_kw)
File "C:\Miniconda3\lib\site-packages\requests\packages\urllib3\connectionpool.py", line 668, in urlopen
release_conn=release_conn, **response_kw)
File "C:\Miniconda3\lib\site-packages\requests\packages\urllib3\connectionpool.py", line 668, in urlopen
release_conn=release_conn, **response_kw)
File "C:\Miniconda3\lib\site-packages\requests\packages\urllib3\connectionpool.py", line 640, in urlopen
_stacktrace=sys.exc_info()[2])
File "C:\Miniconda3\lib\site-packages\requests\packages\urllib3\util\retry.py", line 287, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
requests.packages.urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='repo.continuum.io', port=443): Max retries exceeded with url: /pkgs/free/win-64/repodata.json.bz2 (Caused by ProxyError('Cannot connect to proxy.', OSError('Tunnel connection failed: 407 Proxy Authentication Required',)))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Miniconda3\lib\site-packages\conda\fetch.py", line 112, in fetch_repodata
timeout=(3.05, 60))
File "C:\Miniconda3\lib\site-packages\requests\sessions.py", line 488, in get
return self.request('GET', url, **kwargs)
File "C:\Miniconda3\lib\site-packages\requests\sessions.py", line 475, in request
resp = self.send(prep, **send_kwargs)
File "C:\Miniconda3\lib\site-packages\requests\sessions.py", line 596, in send
r = adapter.send(request, **kwargs)
File "C:\Miniconda3\lib\site-packages\requests\adapters.py", line 485, in send
raise ProxyError(e, request=request)
requests.exceptions.ProxyError: HTTPSConnectionPool(host='repo.continuum.io', port=443): Max retries exceeded with url: /pkgs/free/win-64/repodata.json.bz2 (Caused by ProxyError('Cannot connect to proxy.', OSError('Tunnel connection failed: 407 Proxy Authentication Required',)))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Miniconda3\lib\site-packages\conda\exceptions.py", line 472, in conda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Miniconda3\lib\site-packages\conda\cli\main.py", line 144, in _main
exit_code = args.func(args, p)
File "C:\Miniconda3\lib\site-packages\conda\cli\main_search.py", line 126, in execute
execute_search(args, parser)
File "C:\Miniconda3\lib\site-packages\conda\cli\main_search.py", line 174, in execute_search
unknown=args.unknown)
File "C:\Miniconda3\lib\site-packages\conda\api.py", line 24, in get_index
index = fetch_index(channel_urls, use_cache=use_cache, unknown=unknown)
File "C:\Miniconda3\lib\site-packages\conda\fetch.py", line 287, in fetch_index
repodatas = [(u, f.result()) for u, f in zip(urls, futures)]
File "C:\Miniconda3\lib\site-packages\conda\fetch.py", line 287, in <listcomp>
repodatas = [(u, f.result()) for u, f in zip(urls, futures)]
File "C:\Miniconda3\lib\concurrent\futures\_base.py", line 405, in result
return self.__get_result()
File "C:\Miniconda3\lib\concurrent\futures\_base.py", line 357, in __get_result
raise self._exception
File "C:\Miniconda3\lib\concurrent\futures\thread.py", line 55, in run
result = self.fn(*self.args, **self.kwargs)
File "C:\Miniconda3\lib\site-packages\conda\fetch.py", line 70, in func
res = f(*args, **kwargs)
File "C:\Miniconda3\lib\site-packages\conda\fetch.py", line 178, in fetch_repodata
handle_proxy_407(url, session)
File "C:\Miniconda3\lib\site-packages\conda\fetch.py", line 212, in handle_proxy_407
session.proxies[scheme], username, passwd)
File "C:\Miniconda3\lib\site-packages\conda\common\url.py", line 46, in add_username_and_pass_to_url
url_obj.auth = username + ':' + quote(passwd, '')
AttributeError: can't set attribute
C:\>
|
OSError
|
def prefix_from_arg(arg, shelldict):
from ..base.context import context, locate_prefix_by_name
"Returns a platform-native path"
# MSYS2 converts Unix paths to Windows paths with unix seps
# so we must check for the drive identifier too.
if shelldict["sep"] in arg and not re.match("[a-zA-Z]:", arg):
# strip is removing " marks, not \ - look carefully
native_path = shelldict["path_from"](arg)
if isdir(abspath(native_path.strip('"'))):
prefix = abspath(native_path.strip('"'))
else:
raise CondaValueError("Could not find environment: %s" % native_path)
else:
prefix = locate_prefix_by_name(context, arg.replace("/", os.path.sep))
return prefix
|
def prefix_from_arg(arg, shelldict):
from conda.base.context import context, locate_prefix_by_name
"Returns a platform-native path"
# MSYS2 converts Unix paths to Windows paths with unix seps
# so we must check for the drive identifier too.
if shelldict["sep"] in arg and not re.match("[a-zA-Z]:", arg):
# strip is removing " marks, not \ - look carefully
native_path = shelldict["path_from"](arg)
if isdir(abspath(native_path.strip('"'))):
prefix = abspath(native_path.strip('"'))
else:
raise CondaValueError("Could not find environment: %s" % native_path)
else:
prefix = locate_prefix_by_name(context, arg.replace("/", os.path.sep))
return prefix
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def main():
from ..base.constants import ROOT_ENV_NAME
from ..utils import shells
if "-h" in sys.argv or "--help" in sys.argv:
# all execution paths sys.exit at end.
help(sys.argv[1], sys.argv[2])
if len(sys.argv) > 2:
shell = sys.argv[2]
shelldict = shells[shell]
else:
shelldict = {}
if sys.argv[1] == "..activate":
print(get_activate_path(shelldict))
sys.exit(0)
elif sys.argv[1] == "..deactivate.path":
import re
activation_path = get_activate_path(shelldict)
if os.getenv("_CONDA_HOLD"):
new_path = re.sub(
r"%s(:?)" % re.escape(activation_path),
r"CONDA_PATH_PLACEHOLDER\1",
os.environ[str("PATH")],
1,
)
else:
new_path = re.sub(
r"%s(:?)" % re.escape(activation_path), r"", os.environ[str("PATH")], 1
)
print(new_path)
sys.exit(0)
elif sys.argv[1] == "..checkenv":
if len(sys.argv) < 4:
raise ArgumentError(
"Invalid arguments to checkenv. Need shell and env name/path"
)
if len(sys.argv) > 4:
raise ArgumentError("did not expect more than one argument.")
if sys.argv[3].lower() == ROOT_ENV_NAME.lower():
# no need to check root env and try to install a symlink there
sys.exit(0)
# raise CondaSystemExit
# this should throw an error and exit if the env or path can't be found.
try:
prefix = prefix_from_arg(sys.argv[3], shelldict=shelldict)
except ValueError as e:
raise CondaValueError(text_type(e))
# Make sure an env always has the conda symlink
try:
from ..base.context import context
from ..install import symlink_conda
symlink_conda(prefix, context.root_prefix, shell)
except (IOError, OSError) as e:
if e.errno == errno.EPERM or e.errno == errno.EACCES:
msg = (
"Cannot activate environment {0}.\n"
"User does not have write access for conda symlinks.".format(
sys.argv[2]
)
)
raise CondaEnvironmentError(msg)
raise
sys.exit(0)
# raise CondaSystemExit
elif sys.argv[1] == "..changeps1":
from ..base.context import context
path = int(context.changeps1)
else:
# This means there is a bug in main.py
raise CondaValueError("unexpected command")
# This print is actually what sets the PATH or PROMPT variable. The shell
# script gets this value, and finishes the job.
print(path)
|
def main():
from conda.base.constants import ROOT_ENV_NAME
from conda.utils import shells
if "-h" in sys.argv or "--help" in sys.argv:
# all execution paths sys.exit at end.
help(sys.argv[1], sys.argv[2])
if len(sys.argv) > 2:
shell = sys.argv[2]
shelldict = shells[shell]
else:
shelldict = {}
if sys.argv[1] == "..activate":
print(get_activate_path(shelldict))
sys.exit(0)
elif sys.argv[1] == "..deactivate.path":
import re
activation_path = get_activate_path(shelldict)
if os.getenv("_CONDA_HOLD"):
new_path = re.sub(
r"%s(:?)" % re.escape(activation_path),
r"CONDA_PATH_PLACEHOLDER\1",
os.environ[str("PATH")],
1,
)
else:
new_path = re.sub(
r"%s(:?)" % re.escape(activation_path), r"", os.environ[str("PATH")], 1
)
print(new_path)
sys.exit(0)
elif sys.argv[1] == "..checkenv":
if len(sys.argv) < 4:
raise ArgumentError(
"Invalid arguments to checkenv. Need shell and env name/path"
)
if len(sys.argv) > 4:
raise ArgumentError("did not expect more than one argument.")
if sys.argv[3].lower() == ROOT_ENV_NAME.lower():
# no need to check root env and try to install a symlink there
sys.exit(0)
# raise CondaSystemExit
# this should throw an error and exit if the env or path can't be found.
try:
prefix = prefix_from_arg(sys.argv[3], shelldict=shelldict)
except ValueError as e:
raise CondaValueError(text_type(e))
# Make sure an env always has the conda symlink
try:
from conda.base.context import context
import conda.install
conda.install.symlink_conda(prefix, context.root_prefix, shell)
except (IOError, OSError) as e:
if e.errno == errno.EPERM or e.errno == errno.EACCES:
msg = (
"Cannot activate environment {0}.\n"
"User does not have write access for conda symlinks.".format(
sys.argv[2]
)
)
raise CondaEnvironmentError(msg)
raise
sys.exit(0)
# raise CondaSystemExit
elif sys.argv[1] == "..changeps1":
from conda.base.context import context
path = int(context.changeps1)
else:
# This means there is a bug in main.py
raise CondaValueError("unexpected command")
# This print is actually what sets the PATH or PROMPT variable. The shell
# script gets this value, and finishes the job.
print(path)
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def _get_items(self):
# TODO: Include .tar.bz2 files for local installs.
from ..core.index import get_index
args = self.parsed_args
call_dict = dict(
channel_urls=args.channel or (),
use_cache=True,
prepend=not args.override_channels,
unknown=args.unknown,
)
if hasattr(args, "platform"): # in search
call_dict["platform"] = args.platform
index = get_index(**call_dict)
return [record.name for record in index]
|
def _get_items(self):
# TODO: Include .tar.bz2 files for local installs.
from conda.core.index import get_index
args = self.parsed_args
call_dict = dict(
channel_urls=args.channel or (),
use_cache=True,
prepend=not args.override_channels,
unknown=args.unknown,
)
if hasattr(args, "platform"): # in search
call_dict["platform"] = args.platform
index = get_index(**call_dict)
return [record.name for record in index]
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def _get_items(self):
from ..core.linked_data import linked
packages = linked(context.prefix_w_legacy_search)
return [dist.quad[0] for dist in packages]
|
def _get_items(self):
from conda.core.linked_data import linked
packages = linked(context.prefix_w_legacy_search)
return [dist.quad[0] for dist in packages]
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def get_index_trap(*args, **kwargs):
"""
Retrieves the package index, but traps exceptions and reports them as
JSON if necessary.
"""
from ..core.index import get_index
kwargs.pop("json", None)
return get_index(*args, **kwargs)
|
def get_index_trap(*args, **kwargs):
"""
Retrieves the package index, but traps exceptions and reports them as
JSON if necessary.
"""
from conda.core.index import get_index
kwargs.pop("json", None)
return get_index(*args, **kwargs)
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def handle_envs_list(acc, output=True):
from .. import misc
if output:
print("# conda environments:")
print("#")
def disp_env(prefix):
fmt = "%-20s %s %s"
default = "*" if prefix == context.default_prefix else " "
name = ROOT_ENV_NAME if prefix == context.root_prefix else basename(prefix)
if output:
print(fmt % (name, default, prefix))
for prefix in misc.list_prefixes():
disp_env(prefix)
if prefix != context.root_prefix:
acc.append(prefix)
if output:
print()
|
def handle_envs_list(acc, output=True):
from conda import misc
if output:
print("# conda environments:")
print("#")
def disp_env(prefix):
fmt = "%-20s %s %s"
default = "*" if prefix == context.default_prefix else " "
name = ROOT_ENV_NAME if prefix == context.root_prefix else basename(prefix)
if output:
print(fmt % (name, default, prefix))
for prefix in misc.list_prefixes():
disp_env(prefix)
if prefix != context.root_prefix:
acc.append(prefix)
if output:
print()
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def check_write(command, prefix, json=False):
if inroot_notwritable(prefix):
from .help import root_read_only
root_read_only(command, prefix, json=json)
|
def check_write(command, prefix, json=False):
if inroot_notwritable(prefix):
from conda.cli.help import root_read_only
root_read_only(command, prefix, json=json)
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def _main(*args):
from ..base.constants import SEARCH_PATH
from ..base.context import context
from ..gateways.logging import set_all_logger_level, set_verbosity
if len(args) == 1:
args = args + ("-h",)
p, sub_parsers = generate_parser()
main_modules = [
"info",
"help",
"list",
"search",
"create",
"install",
"update",
"remove",
"config",
"clean",
"package",
]
modules = ["conda.cli.main_" + suffix for suffix in main_modules]
for module in modules:
imported = importlib.import_module(module)
imported.configure_parser(sub_parsers)
if "update" in module:
imported.configure_parser(sub_parsers, name="upgrade")
if "remove" in module:
imported.configure_parser(sub_parsers, name="uninstall")
from .find_commands import find_commands
def completer(prefix, **kwargs):
return [
i
for i in list(sub_parsers.choices) + find_commands()
if i.startswith(prefix)
]
# when using sys.argv, first argument is generally conda or __main__.py. Ignore it.
if any(
sname in args[0]
for sname in ("conda", "conda.exe", "__main__.py", "conda-script.py")
) and (
args[1] in list(sub_parsers.choices.keys()) + find_commands()
or args[1].startswith("-")
):
log.debug("Ignoring first argument (%s), as it is not a subcommand", args[0])
args = args[1:]
sub_parsers.completer = completer
args = p.parse_args(args)
context.__init__(SEARCH_PATH, "conda", args)
if getattr(args, "json", False):
# Silence logging info to avoid interfering with JSON output
for logger in ("print", "dotupdate", "stdoutlog", "stderrlog"):
getLogger(logger).setLevel(CRITICAL + 1)
if context.debug:
set_all_logger_level(DEBUG)
elif context.verbosity:
set_verbosity(context.verbosity)
log.debug("verbosity set to %s", context.verbosity)
exit_code = args.func(args, p)
if isinstance(exit_code, int):
return exit_code
|
def _main(*args):
from ..base.constants import SEARCH_PATH
from ..base.context import context
from ..gateways.logging import set_all_logger_level, set_verbosity
if len(args) == 1:
args = args + ("-h",)
p, sub_parsers = generate_parser()
main_modules = [
"info",
"help",
"list",
"search",
"create",
"install",
"update",
"remove",
"config",
"clean",
"package",
]
modules = ["conda.cli.main_" + suffix for suffix in main_modules]
for module in modules:
imported = importlib.import_module(module)
imported.configure_parser(sub_parsers)
if "update" in module:
imported.configure_parser(sub_parsers, name="upgrade")
if "remove" in module:
imported.configure_parser(sub_parsers, name="uninstall")
from conda.cli.find_commands import find_commands
def completer(prefix, **kwargs):
return [
i
for i in list(sub_parsers.choices) + find_commands()
if i.startswith(prefix)
]
# when using sys.argv, first argument is generally conda or __main__.py. Ignore it.
if any(
sname in args[0]
for sname in ("conda", "conda.exe", "__main__.py", "conda-script.py")
) and (
args[1] in list(sub_parsers.choices.keys()) + find_commands()
or args[1].startswith("-")
):
log.debug("Ignoring first argument (%s), as it is not a subcommand", args[0])
args = args[1:]
sub_parsers.completer = completer
args = p.parse_args(args)
context.__init__(SEARCH_PATH, "conda", args)
if getattr(args, "json", False):
# Silence logging info to avoid interfering with JSON output
for logger in ("print", "dotupdate", "stdoutlog", "stderrlog"):
getLogger(logger).setLevel(CRITICAL + 1)
if context.debug:
set_all_logger_level(DEBUG)
elif context.verbosity:
set_verbosity(context.verbosity)
log.debug("verbosity set to %s", context.verbosity)
exit_code = args.func(args, p)
if isinstance(exit_code, int):
return exit_code
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def get_user_site():
site_dirs = []
try:
if not on_win:
if exists(expanduser("~/.local/lib")):
python_re = re.compile("python\d\.\d")
for path in listdir(expanduser("~/.local/lib/")):
if python_re.match(path):
site_dirs.append("~/.local/lib/%s" % path)
else:
if "APPDATA" not in os.environ:
return site_dirs
APPDATA = os.environ[str("APPDATA")]
if exists(join(APPDATA, "Python")):
site_dirs = [
join(APPDATA, "Python", i) for i in listdir(join(APPDATA, "PYTHON"))
]
except (IOError, OSError) as e:
log.debug("Error accessing user site directory.\n%r", e)
return site_dirs
|
def get_user_site():
site_dirs = []
try:
if not on_win:
if exists(expanduser("~/.local/lib")):
for path in listdir(expanduser("~/.local/lib/")):
if python_re.match(path):
site_dirs.append("~/.local/lib/%s" % path)
else:
if "APPDATA" not in os.environ:
return site_dirs
APPDATA = os.environ[str("APPDATA")]
if exists(join(APPDATA, "Python")):
site_dirs = [
join(APPDATA, "Python", i) for i in listdir(join(APPDATA, "PYTHON"))
]
except (IOError, OSError) as e:
log.debug("Error accessing user site directory.\n%r", e)
return site_dirs
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def pretty_package(dist, pkg):
from ..utils import human_bytes
pkg = dump_record(pkg)
d = OrderedDict(
[
("file name", dist.to_filename()),
("name", pkg["name"]),
("version", pkg["version"]),
("build string", pkg["build"]),
("build number", pkg["build_number"]),
("channel", dist.channel),
("size", human_bytes(pkg["size"])),
]
)
for key in sorted(set(pkg.keys()) - SKIP_FIELDS):
d[key] = pkg[key]
print()
header = "%s %s %s" % (d["name"], d["version"], d["build string"])
print(header)
print("-" * len(header))
for key in d:
print("%-12s: %s" % (key, d[key]))
print("dependencies:")
for dep in pkg["depends"]:
print(" %s" % dep)
|
def pretty_package(dist, pkg):
from conda.utils import human_bytes
pkg = dump_record(pkg)
d = OrderedDict(
[
("file name", dist.to_filename()),
("name", pkg["name"]),
("version", pkg["version"]),
("build string", pkg["build"]),
("build number", pkg["build_number"]),
("channel", dist.channel),
("size", human_bytes(pkg["size"])),
]
)
for key in sorted(set(pkg.keys()) - SKIP_FIELDS):
d[key] = pkg[key]
print()
header = "%s %s %s" % (d["name"], d["version"], d["build string"])
print(header)
print("-" * len(header))
for key in d:
print("%-12s: %s" % (key, d[key]))
print("dependencies:")
for dep in pkg["depends"]:
print(" %s" % dep)
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def execute(args, parser):
from ..base.context import context
if args.root:
if context.json:
stdout_json({"root_prefix": context.root_prefix})
else:
print(context.root_prefix)
return
if args.packages:
print_package_info(args.packages)
return
if args.unsafe_channels:
if not context.json:
print("\n".join(context.channels))
else:
print(json.dumps({"channels": context.channels}))
return 0
options = "envs", "system", "license"
if args.all or context.json:
for option in options:
setattr(args, option, True)
info_dict = get_info_dict(args.system)
if (
args.all or all(not getattr(args, opt) for opt in options)
) and not context.json:
print(get_main_info_str(info_dict))
if args.envs:
handle_envs_list(info_dict["envs"], not context.json)
if args.system:
if not context.json:
from .find_commands import find_commands, find_executable
print("sys.version: %s..." % (sys.version[:40]))
print("sys.prefix: %s" % sys.prefix)
print("sys.executable: %s" % sys.executable)
print("conda location: %s" % info_dict["conda_location"])
for cmd in sorted(set(find_commands() + ["build"])):
print("conda-%s: %s" % (cmd, find_executable("conda-" + cmd)))
print("user site dirs: ", end="")
site_dirs = get_user_site()
if site_dirs:
print(site_dirs[0])
else:
print()
for site_dir in site_dirs[1:]:
print(" %s" % site_dir)
print()
for name, value in sorted(iteritems(info_dict["env_vars"])):
print("%s: %s" % (name, value))
print()
if args.license and not context.json:
try:
from _license import show_info
show_info()
except ImportError:
print("""\
WARNING: could not import _license.show_info
# try:
# $ conda install -n root _license""")
if context.json:
stdout_json(info_dict)
|
def execute(args, parser):
import os
from os.path import dirname
import conda
from conda.base.context import context
from conda.models.channel import offline_keep
from conda.resolve import Resolve
from conda.api import get_index
from conda.connection import user_agent
if args.root:
if context.json:
stdout_json({"root_prefix": context.root_prefix})
else:
print(context.root_prefix)
return
if args.packages:
index = get_index()
r = Resolve(index)
if context.json:
stdout_json(
{
package: [
dump_record(r.index[d])
for d in r.get_dists_for_spec(arg2spec(package))
]
for package in args.packages
}
)
else:
for package in args.packages:
for dist in r.get_dists_for_spec(arg2spec(package)):
pretty_package(dist, r.index[dist])
return
options = "envs", "system", "license"
try:
from conda.install import linked_data
root_pkgs = linked_data(context.root_prefix)
except:
root_pkgs = None
try:
import requests
requests_version = requests.__version__
except ImportError:
requests_version = "could not import"
except Exception as e:
requests_version = "Error %s" % e
try:
import conda_env
conda_env_version = conda_env.__version__
except:
try:
cenv = [p for p in itervalues(root_pkgs) if p["name"] == "conda-env"]
conda_env_version = cenv[0]["version"]
except:
conda_env_version = "not installed"
try:
import conda_build
except ImportError:
conda_build_version = "not installed"
except Exception as e:
conda_build_version = "Error %s" % e
else:
conda_build_version = conda_build.__version__
channels = context.channels
if args.unsafe_channels:
if not context.json:
print("\n".join(channels))
else:
print(json.dumps({"channels": channels}))
return 0
channels = list(prioritize_channels(channels).keys())
if not context.json:
channels = [c + ("" if offline_keep(c) else " (offline)") for c in channels]
channels = [mask_anaconda_token(c) for c in channels]
info_dict = dict(
platform=context.subdir,
conda_version=conda.__version__,
conda_env_version=conda_env_version,
conda_build_version=conda_build_version,
root_prefix=context.root_prefix,
conda_prefix=context.conda_prefix,
conda_private=context.conda_private,
root_writable=context.root_writable,
pkgs_dirs=context.pkgs_dirs,
envs_dirs=context.envs_dirs,
default_prefix=context.default_prefix,
channels=channels,
rc_path=rc_path,
user_rc_path=user_rc_path,
sys_rc_path=sys_rc_path,
# is_foreign=bool(foreign),
offline=context.offline,
envs=[],
python_version=".".join(map(str, sys.version_info)),
requests_version=requests_version,
user_agent=user_agent,
)
if not on_win:
info_dict["UID"] = os.geteuid()
info_dict["GID"] = os.getegid()
if args.all or context.json:
for option in options:
setattr(args, option, True)
if (
args.all or all(not getattr(args, opt) for opt in options)
) and not context.json:
for key in "pkgs_dirs", "envs_dirs", "channels":
info_dict["_" + key] = ("\n" + 26 * " ").join(info_dict[key])
info_dict["_rtwro"] = "writable" if info_dict["root_writable"] else "read only"
print(
"""\
Current conda install:
platform : %(platform)s
conda version : %(conda_version)s
conda is private : %(conda_private)s
conda-env version : %(conda_env_version)s
conda-build version : %(conda_build_version)s
python version : %(python_version)s
requests version : %(requests_version)s
root environment : %(root_prefix)s (%(_rtwro)s)
default environment : %(default_prefix)s
envs directories : %(_envs_dirs)s
package cache : %(_pkgs_dirs)s
channel URLs : %(_channels)s
config file : %(rc_path)s
offline mode : %(offline)s
user-agent : %(user_agent)s\
"""
% info_dict
)
if not on_win:
print(
"""\
UID:GID : %(UID)s:%(GID)s
"""
% info_dict
)
else:
print()
if args.envs:
handle_envs_list(info_dict["envs"], not context.json)
if args.system:
from conda.cli.find_commands import find_commands, find_executable
site_dirs = get_user_site()
evars = [
"PATH",
"PYTHONPATH",
"PYTHONHOME",
"CONDA_DEFAULT_ENV",
"CIO_TEST",
"CONDA_ENVS_PATH",
]
if context.platform == "linux":
evars.append("LD_LIBRARY_PATH")
elif context.platform == "osx":
evars.append("DYLD_LIBRARY_PATH")
if context.json:
info_dict["sys.version"] = sys.version
info_dict["sys.prefix"] = sys.prefix
info_dict["sys.executable"] = sys.executable
info_dict["site_dirs"] = get_user_site()
info_dict["env_vars"] = {ev: os.getenv(ev, "<not set>") for ev in evars}
else:
print("sys.version: %s..." % (sys.version[:40]))
print("sys.prefix: %s" % sys.prefix)
print("sys.executable: %s" % sys.executable)
print("conda location: %s" % dirname(conda.__file__))
for cmd in sorted(set(find_commands() + ["build"])):
print("conda-%s: %s" % (cmd, find_executable("conda-" + cmd)))
print("user site dirs: ", end="")
if site_dirs:
print(site_dirs[0])
else:
print()
for site_dir in site_dirs[1:]:
print(" %s" % site_dir)
print()
for ev in sorted(evars):
print("%s: %s" % (ev, os.getenv(ev, "<not set>")))
print()
if args.license and not context.json:
try:
from _license import show_info
show_info()
except ImportError:
print("""\
WARNING: could not import _license.show_info
# try:
# $ conda install -n root _license""")
if context.json:
stdout_json(info_dict)
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
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