after_merge
stringlengths 28
79.6k
| before_merge
stringlengths 20
79.6k
| url
stringlengths 38
71
| full_traceback
stringlengths 43
922k
| traceback_type
stringclasses 555
values |
|---|---|---|---|---|
def execute(args, parser):
prefix = context.prefix_w_legacy_search
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
if args.revisions:
from ..history import History
h = History(prefix)
if isfile(h.path):
if not context.json:
h.print_log()
else:
stdout_json(h.object_log())
else:
raise CondaFileNotFoundError(h.path)
return
if args.explicit:
print_explicit(prefix, args.md5)
return
if args.canonical:
format = "canonical"
elif args.export:
format = "export"
else:
format = "human"
if context.json:
format = "canonical"
exitcode = print_packages(
prefix,
regex,
format,
piplist=args.pip,
json=context.json,
show_channel_urls=context.show_channel_urls,
)
return exitcode
|
def execute(args, parser):
prefix = context.prefix_w_legacy_search
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
if args.revisions:
from conda.history import History
h = History(prefix)
if isfile(h.path):
if not context.json:
h.print_log()
else:
stdout_json(h.object_log())
else:
raise CondaFileNotFoundError(h.path)
return
if args.explicit:
print_explicit(prefix, args.md5)
return
if args.canonical:
format = "canonical"
elif args.export:
format = "export"
else:
format = "human"
if context.json:
format = "canonical"
exitcode = print_packages(
prefix,
regex,
format,
piplist=args.pip,
json=context.json,
show_channel_urls=context.show_channel_urls,
)
return exitcode
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def execute(args, parser):
from ..core.linked_data import linked_data
from ..gateways.disk.delete import rm_rf
from ..instructions import PREFIX
from ..plan import (
add_unlink,
display_actions,
execute_actions,
is_root_prefix,
nothing_to_do,
remove_actions,
)
if not (args.all or args.package_names):
raise CondaValueError(
'no package names supplied,\n try "conda remove -h" for more details'
)
prefix = context.prefix_w_legacy_search
if args.all and prefix == context.default_prefix:
msg = "cannot remove current environment. deactivate and run conda remove again"
raise CondaEnvironmentError(msg)
check_write("remove", prefix, json=context.json)
ensure_use_local(args)
ensure_override_channels_requires_channel(args)
if not args.features and args.all:
index = linked_data(prefix)
index = {dist: info for dist, info in iteritems(index)}
else:
index = get_index(
channel_urls=context.channels,
prepend=not args.override_channels,
use_local=args.use_local,
use_cache=args.use_index_cache,
prefix=prefix,
)
specs = None
if args.features:
specs = ["@" + f for f in set(args.package_names)]
actions = remove_actions(prefix, specs, index, pinned=args.pinned)
action_groups = (actions,)
elif args.all:
if is_root_prefix(prefix):
raise CondaEnvironmentError(
"cannot remove root environment,\n"
" add -n NAME or -p PREFIX option"
)
actions = {PREFIX: prefix}
for dist in sorted(iterkeys(index)):
add_unlink(actions, dist)
action_groups = (actions,)
else:
specs = specs_from_args(args.package_names)
r = Resolve(index)
prefix_spec_map = create_prefix_spec_map_with_deps(r, specs, prefix)
if (
context.conda_in_root
and is_root_prefix(prefix)
and names_in_specs(ROOT_NO_RM, specs)
and not args.force
):
raise CondaEnvironmentError(
"cannot remove %s from root environment" % ", ".join(ROOT_NO_RM)
)
actions = []
for prfx, spcs in iteritems(prefix_spec_map):
index = linked_data(prfx)
index = {dist: info for dist, info in iteritems(index)}
actions.append(
remove_actions(
prfx, list(spcs), index=index, force=args.force, pinned=args.pinned
)
)
action_groups = tuple(actions)
delete_trash()
if any(nothing_to_do(actions) for actions in action_groups):
if args.all:
print(
"\nRemove all packages in environment %s:\n" % prefix, file=sys.stderr
)
if not context.json:
confirm_yn(args)
rm_rf(prefix)
if context.json:
stdout_json({"success": True, "actions": action_groups})
return
error_message = "no packages found to remove from environment: %s" % prefix
raise PackageNotFoundError(error_message)
for action in action_groups:
if not context.json:
print()
print(
"Package plan for package removal in environment %s:" % action["PREFIX"]
)
display_actions(action, index)
if context.json and args.dry_run:
stdout_json({"success": True, "dry_run": True, "actions": action_groups})
return
if not context.json:
confirm_yn(args)
for actions in action_groups:
if context.json and not context.quiet:
with json_progress_bars():
execute_actions(actions, index, verbose=not context.quiet)
else:
execute_actions(actions, index, verbose=not context.quiet)
if specs:
try:
with open(join(prefix, "conda-meta", "history"), "a") as f:
f.write("# remove specs: %s\n" % ",".join(specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
target_prefix = actions["PREFIX"]
if (
is_private_env(prefix_to_env_name(target_prefix, context.root_prefix))
and linked_data(target_prefix) == {}
):
rm_rf(target_prefix)
if args.all:
rm_rf(prefix)
if context.json:
stdout_json({"success": True, "actions": actions})
|
def execute(args, parser):
import conda.plan as plan
import conda.instructions as inst
from conda.gateways.disk.delete import rm_rf
from conda.core.linked_data import linked_data
if not (args.all or args.package_names):
raise CondaValueError(
'no package names supplied,\n try "conda remove -h" for more details'
)
prefix = context.prefix_w_legacy_search
if args.all and prefix == context.default_prefix:
msg = "cannot remove current environment. deactivate and run conda remove again"
raise CondaEnvironmentError(msg)
check_write("remove", prefix, json=context.json)
ensure_use_local(args)
ensure_override_channels_requires_channel(args)
if not args.features and args.all:
index = linked_data(prefix)
index = {dist: info for dist, info in iteritems(index)}
else:
index = get_index(
channel_urls=context.channels,
prepend=not args.override_channels,
use_local=args.use_local,
use_cache=args.use_index_cache,
prefix=prefix,
)
specs = None
if args.features:
specs = ["@" + f for f in set(args.package_names)]
actions = plan.remove_actions(prefix, specs, index, pinned=args.pinned)
action_groups = (actions,)
elif args.all:
if plan.is_root_prefix(prefix):
raise CondaEnvironmentError(
"cannot remove root environment,\n"
" add -n NAME or -p PREFIX option"
)
actions = {inst.PREFIX: prefix}
for dist in sorted(iterkeys(index)):
plan.add_unlink(actions, dist)
action_groups = (actions,)
else:
specs = specs_from_args(args.package_names)
r = Resolve(index)
prefix_spec_map = create_prefix_spec_map_with_deps(r, specs, prefix)
if (
context.conda_in_root
and plan.is_root_prefix(prefix)
and names_in_specs(ROOT_NO_RM, specs)
and not args.force
):
raise CondaEnvironmentError(
"cannot remove %s from root environment" % ", ".join(ROOT_NO_RM)
)
actions = []
for prfx, spcs in iteritems(prefix_spec_map):
index = linked_data(prfx)
index = {dist: info for dist, info in iteritems(index)}
actions.append(
plan.remove_actions(
prfx, list(spcs), index=index, force=args.force, pinned=args.pinned
)
)
action_groups = tuple(actions)
delete_trash()
if any(plan.nothing_to_do(actions) for actions in action_groups):
if args.all:
print(
"\nRemove all packages in environment %s:\n" % prefix, file=sys.stderr
)
if not context.json:
confirm_yn(args)
rm_rf(prefix)
if context.json:
stdout_json({"success": True, "actions": action_groups})
return
error_message = "no packages found to remove from environment: %s" % prefix
raise PackageNotFoundError(error_message)
for action in action_groups:
if not context.json:
print()
print(
"Package plan for package removal in environment %s:" % action["PREFIX"]
)
plan.display_actions(action, index)
if context.json and args.dry_run:
stdout_json({"success": True, "dry_run": True, "actions": action_groups})
return
if not context.json:
confirm_yn(args)
for actions in action_groups:
if context.json and not context.quiet:
with json_progress_bars():
plan.execute_actions(actions, index, verbose=not context.quiet)
else:
plan.execute_actions(actions, index, verbose=not context.quiet)
if specs:
try:
with open(join(prefix, "conda-meta", "history"), "a") as f:
f.write("# remove specs: %s\n" % ",".join(specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise
target_prefix = actions["PREFIX"]
if (
is_private_env(prefix_to_env_name(target_prefix, context.root_prefix))
and linked_data(target_prefix) == {}
):
rm_rf(target_prefix)
if args.all:
rm_rf(prefix)
if context.json:
stdout_json({"success": True, "actions": actions})
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def execute_search(args, parser):
import re
from ..resolve import Resolve
if args.reverse_dependency:
if not args.regex:
parser.error("--reverse-dependency requires at least one package name")
if args.spec:
parser.error("--reverse-dependency does not work with --spec")
pat = None
ms = None
if args.regex:
if args.spec:
ms = MatchSpec(arg2spec(args.regex))
else:
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
try:
pat = re.compile(regex, re.I)
except re.error as e:
raise CommandArgumentError(
"Failed to compile regex pattern for "
"search: %(regex)s\n"
"regex error: %(regex_error)s",
regex=regex,
regex_error=repr(e),
)
prefix = context.prefix_w_legacy_search
from ..core.linked_data import linked as linked_data
from ..core.package_cache import PackageCache
linked = linked_data(prefix)
extracted = set(
pc_entry.dist.name for pc_entry in PackageCache.get_all_extracted_entries()
)
# XXX: Make this work with more than one platform
platform = args.platform or ""
if platform and platform != context.subdir:
args.unknown = False
ensure_use_local(args)
ensure_override_channels_requires_channel(args, dashc=False)
index = get_index(
channel_urls=context.channels,
prepend=not args.override_channels,
platform=args.platform,
use_local=args.use_local,
use_cache=args.use_index_cache,
prefix=None,
unknown=args.unknown,
)
r = Resolve(index)
if args.canonical:
json = []
else:
json = {}
names = []
for name in sorted(r.groups):
if "@" in name:
continue
res = []
if args.reverse_dependency:
res = [
dist
for dist in r.get_dists_for_spec(name)
if any(pat.search(dep.name) for dep in r.ms_depends(dist))
]
elif ms is not None:
if ms.name == name:
res = r.get_dists_for_spec(ms)
elif pat is None or pat.search(name):
res = r.get_dists_for_spec(name)
if res:
names.append((name, res))
for name, pkgs in names:
disp_name = name
if args.names_only and not args.outdated:
print(name)
continue
if not args.canonical:
json[name] = []
if args.outdated:
vers_inst = [dist.quad[1] for dist in linked if dist.quad[0] == name]
if not vers_inst:
continue
assert len(vers_inst) == 1, name
if not pkgs:
continue
latest = pkgs[-1]
if latest.version == vers_inst[0]:
continue
if args.names_only:
print(name)
continue
for dist in pkgs:
index_record = r.index[dist]
if args.canonical:
if not context.json:
print(dist.dist_name)
else:
json.append(dist.dist_name)
continue
if platform and platform != context.subdir:
inst = " "
elif dist in linked:
inst = "*"
elif dist in extracted:
inst = "."
else:
inst = " "
features = r.features(dist)
if not context.json:
print(
"%-25s %s %-15s %15s %-15s %s"
% (
disp_name,
inst,
index_record.version,
index_record.build,
index_record.schannel,
disp_features(features),
)
)
disp_name = ""
else:
data = {}
data.update(index_record.dump())
data.update(
{
"fn": index_record.fn,
"installed": inst == "*",
"extracted": inst in "*.",
"version": index_record.version,
"build": index_record.build,
"build_number": index_record.build_number,
"channel": index_record.schannel,
"full_channel": index_record.channel,
"features": list(features),
"license": index_record.get("license"),
"size": index_record.get("size"),
"depends": index_record.get("depends"),
"type": index_record.get("type"),
}
)
if data["type"] == "app":
data["icon"] = make_icon_url(index_record.info)
json[name].append(data)
if context.json:
stdout_json(json)
|
def execute_search(args, parser):
import re
from conda.resolve import Resolve
if args.reverse_dependency:
if not args.regex:
parser.error("--reverse-dependency requires at least one package name")
if args.spec:
parser.error("--reverse-dependency does not work with --spec")
pat = None
ms = None
if args.regex:
if args.spec:
ms = MatchSpec(arg2spec(args.regex))
else:
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
try:
pat = re.compile(regex, re.I)
except re.error as e:
raise CommandArgumentError(
"Failed to compile regex pattern for "
"search: %(regex)s\n"
"regex error: %(regex_error)s",
regex=regex,
regex_error=repr(e),
)
prefix = context.prefix_w_legacy_search
from ..core.linked_data import linked as linked_data
from ..core.package_cache import PackageCache
linked = linked_data(prefix)
extracted = set(
pc_entry.dist.name for pc_entry in PackageCache.get_all_extracted_entries()
)
# XXX: Make this work with more than one platform
platform = args.platform or ""
if platform and platform != context.subdir:
args.unknown = False
ensure_use_local(args)
ensure_override_channels_requires_channel(args, dashc=False)
index = get_index(
channel_urls=context.channels,
prepend=not args.override_channels,
platform=args.platform,
use_local=args.use_local,
use_cache=args.use_index_cache,
prefix=None,
unknown=args.unknown,
)
r = Resolve(index)
if args.canonical:
json = []
else:
json = {}
names = []
for name in sorted(r.groups):
if "@" in name:
continue
res = []
if args.reverse_dependency:
res = [
dist
for dist in r.get_dists_for_spec(name)
if any(pat.search(dep.name) for dep in r.ms_depends(dist))
]
elif ms is not None:
if ms.name == name:
res = r.get_dists_for_spec(ms)
elif pat is None or pat.search(name):
res = r.get_dists_for_spec(name)
if res:
names.append((name, res))
for name, pkgs in names:
disp_name = name
if args.names_only and not args.outdated:
print(name)
continue
if not args.canonical:
json[name] = []
if args.outdated:
vers_inst = [dist.quad[1] for dist in linked if dist.quad[0] == name]
if not vers_inst:
continue
assert len(vers_inst) == 1, name
if not pkgs:
continue
latest = pkgs[-1]
if latest.version == vers_inst[0]:
continue
if args.names_only:
print(name)
continue
for dist in pkgs:
index_record = r.index[dist]
if args.canonical:
if not context.json:
print(dist.dist_name)
else:
json.append(dist.dist_name)
continue
if platform and platform != context.subdir:
inst = " "
elif dist in linked:
inst = "*"
elif dist in extracted:
inst = "."
else:
inst = " "
features = r.features(dist)
if not context.json:
print(
"%-25s %s %-15s %15s %-15s %s"
% (
disp_name,
inst,
index_record.version,
index_record.build,
index_record.schannel,
disp_features(features),
)
)
disp_name = ""
else:
data = {}
data.update(index_record.dump())
data.update(
{
"fn": index_record.fn,
"installed": inst == "*",
"extracted": inst in "*.",
"version": index_record.version,
"build": index_record.build,
"build_number": index_record.build_number,
"channel": index_record.schannel,
"full_channel": index_record.channel,
"features": list(features),
"license": index_record.get("license"),
"size": index_record.get("size"),
"depends": index_record.get("depends"),
"type": index_record.get("type"),
}
)
if data["type"] == "app":
data["icon"] = make_icon_url(index_record.info)
json[name].append(data)
if context.json:
stdout_json(json)
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def get_local_urls():
from .models.channel import get_conda_build_local_url
return get_conda_build_local_url() or []
|
def get_local_urls():
from conda.models.channel import get_conda_build_local_url
return get_conda_build_local_url() or []
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def add_binstar_token(url):
clean_url, token = split_anaconda_token(url)
if not token and context.add_anaconda_token:
for binstar_url, token in iteritems(read_binstar_tokens()):
if clean_url.startswith(binstar_url):
log.debug("Adding anaconda token for url <%s>", clean_url)
from .models.channel import Channel
channel = Channel(clean_url)
channel.token = token
return channel.url(with_credentials=True)
return url
|
def add_binstar_token(url):
clean_url, token = split_anaconda_token(url)
if not token and context.add_anaconda_token:
for binstar_url, token in iteritems(read_binstar_tokens()):
if clean_url.startswith(binstar_url):
log.debug("Adding anaconda token for url <%s>", clean_url)
from conda.models.channel import Channel
channel = Channel(clean_url)
channel.token = token
return channel.url(with_credentials=True)
return url
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def print_conda_exception(exception):
from .base.context import context
stdoutlogger = getLogger("stdout")
stderrlogger = getLogger("stderr")
if context.json:
import json
stdoutlogger.info(
json.dumps(
exception.dump_map(), indent=2, sort_keys=True, cls=EntityEncoder
)
)
else:
stderrlogger.info("\n\n%r", exception)
|
def print_conda_exception(exception):
from conda.base.context import context
stdoutlogger = getLogger("stdout")
stderrlogger = getLogger("stderr")
if context.json:
import json
stdoutlogger.info(
json.dumps(
exception.dump_map(), indent=2, sort_keys=True, cls=EntityEncoder
)
)
else:
stderrlogger.info("\n\n%r", exception)
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def print_unexpected_error_message(e):
# bomb = "\U0001F4A3 "
# explosion = "\U0001F4A5 "
# fire = "\U0001F525 "
# print("%s %s %s" % (3*bomb, 3*explosion, 3*fire))
traceback = format_exc()
stderrlogger = getLogger("stderr")
from .base.context import context
if context.json:
from .cli.common import stdout_json
stdout_json(dict(error=traceback))
else:
message = """\
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
"""
stderrlogger.info(message)
command = " ".join(sys.argv)
if " info" not in command:
from .cli.main_info import get_info_dict, get_main_info_str
stderrlogger.info(get_main_info_str(get_info_dict()))
stderrlogger.info("`$ {0}`".format(command))
stderrlogger.info("\n")
stderrlogger.info("\n".join(" " + line for line in traceback.splitlines()))
|
def print_unexpected_error_message(e):
# bomb = "\U0001F4A3 "
# explosion = "\U0001F4A5 "
# fire = "\U0001F525 "
# print("%s %s %s" % (3*bomb, 3*explosion, 3*fire))
traceback = format_exc()
stderrlogger = getLogger("stderr")
from conda.base.context import context
if context.json:
from conda.cli.common import stdout_json
stdout_json(dict(error=traceback))
else:
message = """\
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
"""
stderrlogger.info(message)
command = " ".join(sys.argv)
if " info" not in command:
# get and print `conda info`
info_stdout, info_stderr = get_info()
stderrlogger.info(info_stdout if info_stdout else info_stderr)
stderrlogger.info("`$ {0}`".format(command))
stderrlogger.info("\n")
stderrlogger.info("\n".join(" " + line for line in traceback.splitlines()))
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def handle_exception(e):
if isinstance(e, CondaExitZero):
return 0
elif isinstance(e, CondaError):
from .base.context import context
if context.debug or context.verbosity > 0:
print_unexpected_error_message(e)
else:
print_conda_exception(e)
return 1
else:
print_unexpected_error_message(e)
return 1
|
def handle_exception(e):
if isinstance(e, CondaExitZero):
return 0
elif isinstance(e, CondaError):
from conda.base.context import context
if context.debug or context.verbosity > 0:
print_unexpected_error_message(e)
else:
print_conda_exception(e)
return 1
else:
print_unexpected_error_message(e)
return 1
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def win_conda_bat_redirect(src, dst, shell):
"""Special function for Windows XP where the `CreateSymbolicLink`
function is not available.
Simply creates a `.bat` file at `dst` which calls `src` together with
all command line arguments.
Works of course only with callable files, e.g. `.bat` or `.exe` files.
"""
from .utils import shells
try:
makedirs(dirname(dst))
except OSError as exc: # Python >2.5
if exc.errno == EEXIST and isdir(dirname(dst)):
pass
else:
raise
# bat file redirect
if not isfile(dst + ".bat"):
with open(dst + ".bat", "w") as f:
f.write('@echo off\ncall "%s" %%*\n' % src)
# TODO: probably need one here for powershell at some point
# This one is for bash/cygwin/msys
# set default shell to bash.exe when not provided, as that's most common
if not shell:
shell = "bash.exe"
# technically these are "links" - but islink doesn't work on win
if not isfile(dst):
with open(dst, "w") as f:
f.write("#!/usr/bin/env bash \n")
if src.endswith("conda"):
f.write('%s "$@"' % shells[shell]["path_to"](src + ".exe"))
else:
f.write('source %s "$@"' % shells[shell]["path_to"](src))
# Make the new file executable
# http://stackoverflow.com/a/30463972/1170370
mode = stat(dst).st_mode
mode |= (mode & 292) >> 2 # copy R bits to X
chmod(dst, mode)
|
def win_conda_bat_redirect(src, dst, shell):
"""Special function for Windows XP where the `CreateSymbolicLink`
function is not available.
Simply creates a `.bat` file at `dst` which calls `src` together with
all command line arguments.
Works of course only with callable files, e.g. `.bat` or `.exe` files.
"""
from conda.utils import shells
try:
makedirs(dirname(dst))
except OSError as exc: # Python >2.5
if exc.errno == EEXIST and isdir(dirname(dst)):
pass
else:
raise
# bat file redirect
if not isfile(dst + ".bat"):
with open(dst + ".bat", "w") as f:
f.write('@echo off\ncall "%s" %%*\n' % src)
# TODO: probably need one here for powershell at some point
# This one is for bash/cygwin/msys
# set default shell to bash.exe when not provided, as that's most common
if not shell:
shell = "bash.exe"
# technically these are "links" - but islink doesn't work on win
if not isfile(dst):
with open(dst, "w") as f:
f.write("#!/usr/bin/env bash \n")
if src.endswith("conda"):
f.write('%s "$@"' % shells[shell]["path_to"](src + ".exe"))
else:
f.write('source %s "$@"' % shells[shell]["path_to"](src))
# Make the new file executable
# http://stackoverflow.com/a/30463972/1170370
mode = stat(dst).st_mode
mode |= (mode & 292) >> 2 # copy R bits to X
chmod(dst, mode)
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def execute(args, parser):
from ..base.context import context
if args.root:
if context.json:
stdout_json({"root_prefix": context.root_prefix})
else:
print(context.root_prefix)
return
if args.packages:
print_package_info(args.packages)
return
if args.unsafe_channels:
if not context.json:
print("\n".join(context.channels))
else:
print(json.dumps({"channels": context.channels}))
return 0
options = "envs", "system", "license"
if args.all or context.json:
for option in options:
setattr(args, option, True)
info_dict = get_info_dict(args.system)
if (
args.all or all(not getattr(args, opt) for opt in options)
) and not context.json:
print(get_main_info_str(info_dict))
if args.envs:
handle_envs_list(info_dict["envs"], not context.json)
if args.system:
if not context.json:
from .find_commands import find_commands, find_executable
print("sys.version: %s..." % (sys.version[:40]))
print("sys.prefix: %s" % sys.prefix)
print("sys.executable: %s" % sys.executable)
print("conda location: %s" % info_dict["conda_location"])
for cmd in sorted(set(find_commands() + ["build"])):
print("conda-%s: %s" % (cmd, find_executable("conda-" + cmd)))
print("user site dirs: ", end="")
site_dirs = get_user_site()
if site_dirs:
print(site_dirs[0])
else:
print()
for site_dir in site_dirs[1:]:
print(" %s" % site_dir)
print()
for name, value in sorted(iteritems(info_dict["env_vars"])):
print("%s: %s" % (name, value))
print()
if args.license and not context.json:
try:
from _license import show_info
show_info()
except ImportError:
print("""\
WARNING: could not import _license.show_info
# try:
# $ conda install -n root _license""")
if context.json:
stdout_json(info_dict)
|
def execute(args, parser):
from ..base.context import context
if args.root:
if context.json:
stdout_json({"root_prefix": context.root_prefix})
else:
print(context.root_prefix)
return
if args.packages:
print_package_info(args.packages)
return
if args.unsafe_channels:
if not context.json:
print("\n".join(context.channels))
else:
print(json.dumps({"channels": context.channels}))
return 0
options = "envs", "system", "license"
if args.all or context.json:
for option in options:
setattr(args, option, True)
info_dict = get_info_dict(args.system)
if (
args.all or all(not getattr(args, opt) for opt in options)
) and not context.json:
print_main_info(info_dict)
if args.envs:
handle_envs_list(info_dict["envs"], not context.json)
if args.system:
if not context.json:
from .find_commands import find_commands, find_executable
print("sys.version: %s..." % (sys.version[:40]))
print("sys.prefix: %s" % sys.prefix)
print("sys.executable: %s" % sys.executable)
print("conda location: %s" % info_dict["conda_location"])
for cmd in sorted(set(find_commands() + ["build"])):
print("conda-%s: %s" % (cmd, find_executable("conda-" + cmd)))
print("user site dirs: ", end="")
site_dirs = get_user_site()
if site_dirs:
print(site_dirs[0])
else:
print()
for site_dir in site_dirs[1:]:
print(" %s" % site_dir)
print()
for name, value in sorted(iteritems(info_dict["env_vars"])):
print("%s: %s" % (name, value))
print()
if args.license and not context.json:
try:
from _license import show_info
show_info()
except ImportError:
print("""\
WARNING: could not import _license.show_info
# try:
# $ conda install -n root _license""")
if context.json:
stdout_json(info_dict)
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def print_unexpected_error_message(e):
# bomb = "\U0001F4A3 "
# explosion = "\U0001F4A5 "
# fire = "\U0001F525 "
# print("%s %s %s" % (3*bomb, 3*explosion, 3*fire))
traceback = format_exc()
stderrlogger = getLogger("stderr")
from .base.context import context
if context.json:
from .cli.common import stdout_json
stdout_json(dict(error=traceback))
else:
message = """\
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
"""
stderrlogger.info(message)
command = " ".join(sys.argv)
if " info" not in command:
from .cli.main_info import get_info_dict, get_main_info_str
stderrlogger.info(get_main_info_str(get_info_dict()))
stderrlogger.info("`$ {0}`".format(command))
stderrlogger.info("\n")
stderrlogger.info("\n".join(" " + line for line in traceback.splitlines()))
|
def print_unexpected_error_message(e):
# bomb = "\U0001F4A3 "
# explosion = "\U0001F4A5 "
# fire = "\U0001F525 "
# print("%s %s %s" % (3*bomb, 3*explosion, 3*fire))
traceback = format_exc()
stderrlogger = getLogger("stderr")
from .base.context import context
if context.json:
from .cli.common import stdout_json
stdout_json(dict(error=traceback))
else:
message = """\
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
"""
stderrlogger.info(message)
command = " ".join(sys.argv)
if " info" not in command:
# get and print `conda info`
info_stdout, info_stderr = get_info()
stderrlogger.info(info_stdout if info_stdout else info_stderr)
stderrlogger.info("`$ {0}`".format(command))
stderrlogger.info("\n")
stderrlogger.info("\n".join(" " + line for line in traceback.splitlines()))
|
https://github.com/conda/conda/issues/5039
|
$ conda -h
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/vmrguser/anaconda2/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 589, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 543, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 513, in get_info
args.func(args, p)
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 148, in execute
from conda.api import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/home/vmrguser/anaconda2/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: No module named packages.urllib3.exceptions
|
ImportError
|
def clone(src_arg, dst_prefix, json=False, quiet=False, index_args=None):
if os.sep in src_arg:
src_prefix = abspath(src_arg)
if not isdir(src_prefix):
raise DirectoryNotFoundError(src_arg)
else:
src_prefix = context.clone_src
if not json:
print("Source: %s" % src_prefix)
print("Destination: %s" % dst_prefix)
with common.json_progress_bars(json=json and not quiet):
actions, untracked_files = clone_env(
src_prefix, dst_prefix, verbose=not json, quiet=quiet, index_args=index_args
)
if json:
common.stdout_json_success(
actions=actions,
untracked_files=list(untracked_files),
src_prefix=src_prefix,
dst_prefix=dst_prefix,
)
|
def clone(src_arg, dst_prefix, json=False, quiet=False, index_args=None):
if os.sep in src_arg:
src_prefix = abspath(src_arg)
if not isdir(src_prefix):
raise DirectoryNotFoundError(
src_arg, "no such directory: %s" % src_arg, json
)
else:
src_prefix = context.clone_src
if not json:
print("Source: %s" % src_prefix)
print("Destination: %s" % dst_prefix)
with common.json_progress_bars(json=json and not quiet):
actions, untracked_files = clone_env(
src_prefix, dst_prefix, verbose=not json, quiet=quiet, index_args=index_args
)
if json:
common.stdout_json_success(
actions=actions,
untracked_files=list(untracked_files),
src_prefix=src_prefix,
dst_prefix=dst_prefix,
)
|
https://github.com/conda/conda/issues/4969
|
Traceback (most recent call last):
File "/conda/lib/python3.6/site-packages/conda/exceptions.py", line 591, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/conda/lib/python3.6/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/conda/lib/python3.6/site-packages/conda/cli/main_create.py", line 68, in execute
install(args, parser, 'create')
File "/conda/lib/python3.6/site-packages/conda/cli/install.py", line 212, in install
clone(args.clone, prefix, json=context.json, quiet=context.quiet, index_args=index_args)
File "/conda/lib/python3.6/site-packages/conda/cli/install.py", line 57, in clone
raise DirectoryNotFoundError(src_arg, 'no such directory: %s' % src_arg, json)
TypeError: __init__() takes 2 positional arguments but 4 were given
|
TypeError
|
def install(args, parser, command="install"):
"""
conda install, conda update, and conda create
"""
context.validate_configuration()
newenv = bool(command == "create")
isupdate = bool(command == "update")
isinstall = bool(command == "install")
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = context.prefix if newenv or args.mkdir else context.prefix_w_legacy_search
if newenv:
check_prefix(prefix, json=context.json)
if context.force_32bit and is_root_prefix(prefix):
raise CondaValueError("cannot use CONDA_FORCE_32BIT=1 in root env")
if isupdate and not (args.file or args.all or args.packages):
raise CondaValueError(
"""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
"""
% prefix
)
linked_dists = install_linked(prefix)
linked_names = tuple(ld.quad[0] for ld in linked_dists)
if isupdate and not args.all:
for name in args.packages:
common.arg2spec(name, json=context.json, update=True)
if (
name not in linked_names
and common.prefix_if_in_private_env(name) is None
):
raise PackageNotInstalledError(prefix, name)
if newenv and not args.no_default_packages:
default_packages = list(context.create_default_packages)
# Override defaults if they are specified at the command line
for default_pkg in context.create_default_packages:
if any(pkg.split("=")[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
else:
default_packages = []
common.ensure_use_local(args)
common.ensure_override_channels_requires_channel(args)
index_args = {
"use_cache": args.use_index_cache,
"channel_urls": context.channels,
"unknown": args.unknown,
"prepend": not args.override_channels,
"use_local": args.use_local,
}
specs = []
if args.file:
for fpath in args.file:
specs.extend(common.specs_from_url(fpath, json=context.json))
if "@EXPLICIT" in specs:
explicit(specs, prefix, verbose=not context.quiet, index_args=index_args)
return
elif getattr(args, "all", False):
if not linked_dists:
log.info("There are no packages installed in prefix %s", prefix)
return
specs.extend(d.quad[0] for d in linked_dists)
specs.extend(common.specs_from_args(args.packages, json=context.json))
if isinstall and args.revision:
get_revision(args.revision, json=context.json)
elif isinstall and not (args.file or args.packages):
raise CondaValueError(
"too few arguments, must supply command line package specs or --file"
)
num_cp = sum(s.endswith(".tar.bz2") for s in args.packages)
if num_cp:
if num_cp == len(args.packages):
explicit(args.packages, prefix, verbose=not context.quiet)
return
else:
raise CondaValueError(
"cannot mix specifications with conda package filenames"
)
if newenv and args.clone:
package_diff = set(args.packages) - set(default_packages)
if package_diff:
raise TooManyArgumentsError(
0,
len(package_diff),
list(package_diff),
"did not expect any arguments for --clone",
)
clone(
args.clone,
prefix,
json=context.json,
quiet=context.quiet,
index_args=index_args,
)
append_env(prefix)
touch_nonadmin(prefix)
if not context.json and not context.quiet:
print(print_activate(args.name if args.name else prefix))
return
index = get_index(
channel_urls=index_args["channel_urls"],
prepend=index_args["prepend"],
platform=None,
use_local=index_args["use_local"],
use_cache=index_args["use_cache"],
unknown=index_args["unknown"],
prefix=prefix,
)
ospecs = list(specs)
if args.force:
args.no_deps = True
if args.no_deps:
only_names = set(s.split()[0] for s in ospecs)
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
raise CondaOSError("Error: could not create directory: %s" % prefix)
else:
raise CondaEnvironmentNotFoundError(prefix)
try:
if isinstall and args.revision:
action_set = [revert_actions(prefix, get_revision(args.revision), index)]
else:
with common.json_progress_bars(json=context.json and not context.quiet):
_channel_priority_map = prioritize_channels(index_args["channel_urls"])
action_set = install_actions_list(
prefix,
index,
specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
always_copy=context.always_copy,
minimal_hint=args.alt_hint,
update_deps=context.update_dependencies,
channel_priority_map=_channel_priority_map,
is_update=isupdate,
)
except NoPackagesFoundError as e:
error_message = [e.args[0]]
if isupdate and args.all:
# Packages not found here just means they were installed but
# cannot be found any more. Just skip them.
if not context.json:
print("Warning: %s, skipping" % error_message)
else:
# Not sure what to do here
pass
args._skip = getattr(args, "_skip", ["anaconda"])
for pkg in e.pkgs:
p = pkg.split()[0]
if p in args._skip:
# Avoid infinite recursion. This can happen if a spec
# comes from elsewhere, like --file
raise
args._skip.append(p)
return install(args, parser, command=command)
else:
packages = {index[fn]["name"] for fn in index}
nfound = 0
for pkg in sorted(e.pkgs):
pkg = pkg.split()[0]
if pkg in packages:
continue
close = get_close_matches(pkg, packages, cutoff=0.7)
if not close:
continue
if nfound == 0:
error_message.append(
"\n\nClose matches found; did you mean one of these?\n"
)
error_message.append("\n %s: %s" % (pkg, ", ".join(close)))
nfound += 1
# error_message.append('\n\nYou can search for packages on anaconda.org with')
# error_message.append('\n\n anaconda search -t conda %s' % pkg)
if len(e.pkgs) > 1:
# Note this currently only happens with dependencies not found
error_message.append("\n\n(and similarly for the other packages)")
# if not find_executable('anaconda', include_others=False):
# error_message.append('\n\nYou may need to install the anaconda-client')
# error_message.append(' command line client with')
# error_message.append('\n\n conda install anaconda-client')
pinned_specs = get_pinned_specs(prefix)
if pinned_specs:
path = join(prefix, "conda-meta", "pinned")
error_message.append(
"\n\nNote that you have pinned specs in %s:" % path
)
error_message.append("\n\n %r" % (pinned_specs,))
error_message = "".join(error_message)
raise PackageNotFoundError(error_message)
except (UnsatisfiableError, SystemExit) as e:
# Unsatisfiable package specifications/no such revision/import error
if e.args and "could not import" in e.args[0]:
raise CondaImportError(text_type(e))
raise
if not context.json:
if any(nothing_to_do(actions) for actions in action_set) and not newenv:
from .main_list import print_packages
if not context.json:
spec_regex = r"^(%s)$" % re.escape(
"|".join(s.split()[0] for s in ospecs)
)
print("\n# All requested packages already installed.")
for action in action_set:
print_packages(action["PREFIX"], spec_regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
for actions in action_set:
print()
print(
"Package plan for installation in environment %s:" % actions["PREFIX"]
)
display_actions(actions, index, show_channel_urls=context.show_channel_urls)
# TODO: this is where the transactions should be instantiated
common.confirm_yn(args)
elif args.dry_run:
common.stdout_json_success(actions=action_set, dry_run=True)
raise DryRunExit()
for actions in action_set:
if newenv:
# needed in the case of creating an empty env
from ..instructions import LINK, UNLINK, SYMLINK_CONDA
if not actions[LINK] and not actions[UNLINK]:
actions[SYMLINK_CONDA] = [context.root_prefix]
if command in {"install", "update"}:
check_write(command, prefix)
# if not context.json:
# common.confirm_yn(args)
# elif args.dry_run:
# common.stdout_json_success(actions=actions, dry_run=True)
# raise DryRunExit()
with common.json_progress_bars(json=context.json and not context.quiet):
try:
execute_actions(actions, index, verbose=not context.quiet)
if not (command == "update" and args.all):
try:
with open(join(prefix, "conda-meta", "history"), "a") as f:
f.write("# %s specs: %s\n" % (command, ",".join(specs)))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise CondaIOError("Can't write the history file", e)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError("Already locked: %s" % text_type(e))
else:
raise CondaRuntimeError("RuntimeError: %s" % e)
except SystemExit as e:
raise CondaSystemExit("Exiting", e)
if newenv:
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
if context.json:
common.stdout_json_success(actions=actions)
|
def install(args, parser, command="install"):
"""
conda install, conda update, and conda create
"""
context.validate_configuration()
newenv = bool(command == "create")
isupdate = bool(command == "update")
isinstall = bool(command == "install")
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = context.prefix if newenv or args.mkdir else context.prefix_w_legacy_search
if newenv:
check_prefix(prefix, json=context.json)
if context.force_32bit and is_root_prefix(prefix):
raise CondaValueError("cannot use CONDA_FORCE_32BIT=1 in root env")
if isupdate and not (args.file or args.all or args.packages):
raise CondaValueError(
"""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
"""
% prefix
)
linked_dists = install_linked(prefix)
linked_names = tuple(ld.quad[0] for ld in linked_dists)
if isupdate and not args.all:
for name in args.packages:
common.arg2spec(name, json=context.json, update=True)
if (
name not in linked_names
and common.prefix_if_in_private_env(name) is None
):
raise PackageNotInstalledError(prefix, name)
if newenv and not args.no_default_packages:
default_packages = list(context.create_default_packages)
# Override defaults if they are specified at the command line
for default_pkg in context.create_default_packages:
if any(pkg.split("=")[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
else:
default_packages = []
common.ensure_use_local(args)
common.ensure_override_channels_requires_channel(args)
index_args = {
"use_cache": args.use_index_cache,
"channel_urls": context.channels,
"unknown": args.unknown,
"prepend": not args.override_channels,
"use_local": args.use_local,
}
specs = []
if args.file:
for fpath in args.file:
specs.extend(common.specs_from_url(fpath, json=context.json))
if "@EXPLICIT" in specs:
explicit(specs, prefix, verbose=not context.quiet, index_args=index_args)
return
elif getattr(args, "all", False):
if not linked_dists:
log.info("There are no packages installed in prefix %s", prefix)
return
specs.extend(d.quad[0] for d in linked_dists)
specs.extend(common.specs_from_args(args.packages, json=context.json))
if isinstall and args.revision:
get_revision(args.revision, json=context.json)
elif isinstall and not (args.file or args.packages):
raise CondaValueError(
"too few arguments, must supply command line package specs or --file"
)
num_cp = sum(s.endswith(".tar.bz2") for s in args.packages)
if num_cp:
if num_cp == len(args.packages):
explicit(args.packages, prefix, verbose=not context.quiet)
return
else:
raise CondaValueError(
"cannot mix specifications with conda package filenames"
)
if newenv and args.clone:
package_diff = set(args.packages) - set(default_packages)
if package_diff:
raise TooManyArgumentsError(
0,
len(package_diff),
list(package_diff),
"did not expect any arguments for --clone",
)
clone(
args.clone,
prefix,
json=context.json,
quiet=context.quiet,
index_args=index_args,
)
append_env(prefix)
touch_nonadmin(prefix)
if not context.json and not context.quiet:
print(print_activate(args.name if args.name else prefix))
return
index = get_index(
channel_urls=index_args["channel_urls"],
prepend=index_args["prepend"],
platform=None,
use_local=index_args["use_local"],
use_cache=index_args["use_cache"],
unknown=index_args["unknown"],
prefix=prefix,
)
ospecs = list(specs)
if args.force:
args.no_deps = True
if args.no_deps:
only_names = set(s.split()[0] for s in ospecs)
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
raise CondaOSError("Error: could not create directory: %s" % prefix)
else:
raise CondaEnvironmentNotFoundError(prefix)
try:
if isinstall and args.revision:
action_set = [revert_actions(prefix, get_revision(args.revision), index)]
else:
with common.json_progress_bars(json=context.json and not context.quiet):
_channel_priority_map = prioritize_channels(index_args["channel_urls"])
action_set = install_actions_list(
prefix,
index,
specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
always_copy=context.always_copy,
minimal_hint=args.alt_hint,
update_deps=context.update_dependencies,
channel_priority_map=_channel_priority_map,
is_update=isupdate,
)
except NoPackagesFoundError as e:
error_message = [e.args[0]]
if isupdate and args.all:
# Packages not found here just means they were installed but
# cannot be found any more. Just skip them.
if not context.json:
print("Warning: %s, skipping" % error_message)
else:
# Not sure what to do here
pass
args._skip = getattr(args, "_skip", ["anaconda"])
for pkg in e.pkgs:
p = pkg.split()[0]
if p in args._skip:
# Avoid infinite recursion. This can happen if a spec
# comes from elsewhere, like --file
raise
args._skip.append(p)
return install(args, parser, command=command)
else:
packages = {index[fn]["name"] for fn in index}
nfound = 0
for pkg in sorted(e.pkgs):
pkg = pkg.split()[0]
if pkg in packages:
continue
close = get_close_matches(pkg, packages, cutoff=0.7)
if not close:
continue
if nfound == 0:
error_message.append(
"\n\nClose matches found; did you mean one of these?\n"
)
error_message.append("\n %s: %s" % (pkg, ", ".join(close)))
nfound += 1
# error_message.append('\n\nYou can search for packages on anaconda.org with')
# error_message.append('\n\n anaconda search -t conda %s' % pkg)
if len(e.pkgs) > 1:
# Note this currently only happens with dependencies not found
error_message.append("\n\n(and similarly for the other packages)")
# if not find_executable('anaconda', include_others=False):
# error_message.append('\n\nYou may need to install the anaconda-client')
# error_message.append(' command line client with')
# error_message.append('\n\n conda install anaconda-client')
pinned_specs = get_pinned_specs(prefix)
if pinned_specs:
path = join(prefix, "conda-meta", "pinned")
error_message.append(
"\n\nNote that you have pinned specs in %s:" % path
)
error_message.append("\n\n %r" % pinned_specs)
error_message = "".join(error_message)
raise PackageNotFoundError(error_message)
except (UnsatisfiableError, SystemExit) as e:
# Unsatisfiable package specifications/no such revision/import error
if e.args and "could not import" in e.args[0]:
raise CondaImportError(text_type(e))
raise
if not context.json:
if any(nothing_to_do(actions) for actions in action_set) and not newenv:
from .main_list import print_packages
if not context.json:
spec_regex = r"^(%s)$" % re.escape(
"|".join(s.split()[0] for s in ospecs)
)
print("\n# All requested packages already installed.")
for action in action_set:
print_packages(action["PREFIX"], spec_regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
for actions in action_set:
print()
print(
"Package plan for installation in environment %s:" % actions["PREFIX"]
)
display_actions(actions, index, show_channel_urls=context.show_channel_urls)
# TODO: this is where the transactions should be instantiated
common.confirm_yn(args)
elif args.dry_run:
common.stdout_json_success(actions=action_set, dry_run=True)
raise DryRunExit()
for actions in action_set:
if newenv:
# needed in the case of creating an empty env
from ..instructions import LINK, UNLINK, SYMLINK_CONDA
if not actions[LINK] and not actions[UNLINK]:
actions[SYMLINK_CONDA] = [context.root_prefix]
if command in {"install", "update"}:
check_write(command, prefix)
# if not context.json:
# common.confirm_yn(args)
# elif args.dry_run:
# common.stdout_json_success(actions=actions, dry_run=True)
# raise DryRunExit()
with common.json_progress_bars(json=context.json and not context.quiet):
try:
execute_actions(actions, index, verbose=not context.quiet)
if not (command == "update" and args.all):
try:
with open(join(prefix, "conda-meta", "history"), "a") as f:
f.write("# %s specs: %s\n" % (command, ",".join(specs)))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise CondaIOError("Can't write the history file", e)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError("Already locked: %s" % text_type(e))
else:
raise CondaRuntimeError("RuntimeError: %s" % e)
except SystemExit as e:
raise CondaSystemExit("Exiting", e)
if newenv:
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
if context.json:
common.stdout_json_success(actions=actions)
|
https://github.com/conda/conda/issues/4998
|
`$ F:\miniconda3_4.3.16_x64\Scripts\conda-script.py install foobar`
Traceback (most recent call last):
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\cli\install.py", line 251, in install
channel_priority_map=_channel_priority_map, is_update=isupdate)
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\plan.py", line 474, in install_actions_
list
dists_for_envs = determine_all_envs(r, specs, channel_priority_map=channel_priority_map)
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\plan.py", line 539, in determine_all_en
vs
spec_for_envs = tuple(SpecForEnv(env=p.preferred_env, spec=p.name) for p in best_pkgs)
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\plan.py", line 539, in <genexpr>
spec_for_envs = tuple(SpecForEnv(env=p.preferred_env, spec=p.name) for p in best_pkgs)
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\plan.py", line 538, in <genexpr>
best_pkgs = (r.index[r.get_dists_for_spec(s, emptyok=False)[-1]] for s in specs)
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\resolve.py", line 564, in get_dists_for
_spec
raise NoPackagesFoundError([(ms,)])
conda.exceptions.NoPackagesFoundError: Package missing in current win-64 channels:
- foobar
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\exceptions.py", line 626, in conda_exce
ption_handler
return_value = func(*args, **kwargs)
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\cli\main.py", line 134, in _main
exit_code = args.func(args, p)
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\cli\main_install.py", line 80, in execu
te
install(args, parser, 'install')
File "F:\miniconda3_4.3.16_x64\lib\site-packages\conda\cli\install.py", line 303, in install
error_message.append("\n\n %r" % pinned_specs)
TypeError: not all arguments converted during string formatting
|
conda.exceptions.NoPackagesFoundError
|
def signal_handler(handler):
_thread_local = threading.local()
_thread_local.previous_handlers = []
for signame in INTERRUPT_SIGNALS:
sig = getattr(signal, signame, None)
if sig:
log.debug("registering handler for %s", signame)
try:
prev_handler = signal.signal(sig, handler)
_thread_local.previous_handlers.append((sig, prev_handler))
except ValueError as e:
# ValueError: signal only works in main thread
log.debug("%r", e)
try:
yield
finally:
standard_handlers = signal.SIG_IGN, signal.SIG_DFL
for sig, previous_handler in _thread_local.previous_handlers:
if callable(previous_handler) or previous_handler in standard_handlers:
log.debug("de-registering handler for %s", sig)
signal.signal(sig, previous_handler)
|
def signal_handler(handler):
previous_handlers = []
for signame in INTERRUPT_SIGNALS:
sig = getattr(signal, signame, None)
if sig:
log.debug("registering handler for %s", signame)
prev_handler = signal.signal(sig, handler)
previous_handlers.append((sig, prev_handler))
try:
yield
finally:
standard_handlers = signal.SIG_IGN, signal.SIG_DFL
for sig, previous_handler in previous_handlers:
if callable(previous_handler) or previous_handler in standard_handlers:
log.debug("de-registering handler for %s", sig)
signal.signal(sig, previous_handler)
|
https://github.com/conda/conda/issues/5132
|
Traceback (most recent call last):
File "/home/travis/build/conda/conda/conda-build/conda_build/build.py", line 688, in create_env
execute_actions(actions, index, verbose=config.debug)
File "/home/travis/build/conda/conda/conda/plan.py", line 612, in execute_actions
execute_instructions(plan, index, verbose)
File "/home/travis/build/conda/conda/conda/instructions.py", line 243, in execute_instructions
cmd(state, arg)
File "/home/travis/build/conda/conda/conda/instructions.py", line 98, in PROGRESSIVEFETCHEXTRACT_CMD
progressive_fetch_extract.execute()
File "/home/travis/build/conda/conda/conda/core/package_cache.py", line 491, in execute
with signal_handler(conda_signal_handler):
File "/home/travis/miniconda/lib/python3.6/contextlib.py", line 82, in __enter__
return next(self.gen)
File "/home/travis/build/conda/conda/conda/common/signals.py", line 41, in signal_handler
prev_handler = signal.signal(sig, handler)
File "/home/travis/miniconda/lib/python3.6/signal.py", line 47, in signal
handler = _signal.signal(_enum_to_int(signalnum), _enum_to_int(handler))
ValueError: signal only works in main thread
|
ValueError
|
def install_actions_list(
prefix,
index,
specs,
force=False,
only_names=None,
always_copy=False,
pinned=True,
minimal_hint=False,
update_deps=True,
prune=False,
channel_priority_map=None,
is_update=False,
):
# type: (str, Dict[Dist, Record], List[str], bool, Option[List[str]], bool, bool, bool,
# bool, bool, bool, Dict[str, Sequence[str, int]]) -> List[Dict[weird]]
specs = [MatchSpec(spec) for spec in specs]
r = get_resolve_object(index.copy(), prefix)
linked_in_root = linked_data(context.root_prefix)
dists_for_envs = determine_all_envs(
r, specs, channel_priority_map=channel_priority_map
)
ensure_packge_not_duplicated_in_private_env_root(dists_for_envs, linked_in_root)
preferred_envs = set(d.env for d in dists_for_envs)
# Group specs by prefix
grouped_specs = determine_dists_per_prefix(
r, prefix, index, preferred_envs, dists_for_envs, context
)
# Replace SpecsForPrefix specs with specs that were passed in in order to retain
# version information
required_solves = match_to_original_specs(specs, grouped_specs)
actions = [
get_actions_for_dists(
specs_by_prefix,
only_names,
index,
force,
always_copy,
prune,
update_deps,
pinned,
)
for specs_by_prefix in required_solves
]
# Need to add unlink actions if updating a private env from root
if is_update and prefix == context.root_prefix:
add_unlink_options_for_update(actions, required_solves, index)
return actions
|
def install_actions_list(
prefix,
index,
specs,
force=False,
only_names=None,
always_copy=False,
pinned=True,
minimal_hint=False,
update_deps=True,
prune=False,
channel_priority_map=None,
is_update=False,
):
# type: (str, Dict[Dist, Record], List[str], bool, Option[List[str]], bool, bool, bool,
# bool, bool, bool, Dict[str, Sequence[str, int]]) -> List[Dict[weird]]
str_specs = specs
specs = [MatchSpec(spec) for spec in specs]
r = get_resolve_object(index.copy(), prefix)
linked_in_root = linked_data(context.root_prefix)
dists_for_envs = determine_all_envs(
r, specs, channel_priority_map=channel_priority_map
)
ensure_packge_not_duplicated_in_private_env_root(dists_for_envs, linked_in_root)
preferred_envs = set(d.env for d in dists_for_envs)
# Group specs by prefix
grouped_specs = determine_dists_per_prefix(
r, prefix, index, preferred_envs, dists_for_envs, context
)
# Replace SpecsForPrefix specs with specs that were passed in in order to retain
# version information
required_solves = match_to_original_specs(str_specs, grouped_specs)
actions = [
get_actions_for_dists(
dists_by_prefix,
only_names,
index,
force,
always_copy,
prune,
update_deps,
pinned,
)
for dists_by_prefix in required_solves
]
# Need to add unlink actions if updating a private env from root
if is_update and prefix == context.root_prefix:
add_unlink_options_for_update(actions, required_solves, index)
return actions
|
https://github.com/conda/conda/issues/4849
|
$ conda info -a
Current conda install:
platform : linux-64
conda version : 4.3.13
conda is private : False
conda-env version : 4.3.13
conda-build version : 2.0.2
python version : 2.7.12.final.0
requests version : 2.13.0
root environment : /home/hp/bin/anaconda2 (writable)
default environment : /home/hp/bin/anaconda2/envs/kapsel
envs directories : /home/hp/bin/anaconda2/envs
/home/hp/.conda/envs
package cache : /home/hp/bin/anaconda2/pkgs
/home/hp/.conda/pkgs
channel URLs : https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
https://conda.anaconda.org/t/<TOKEN>/binstar/linux-64
https://conda.anaconda.org/t/<TOKEN>/binstar/noarch
config file : /home/hp/.condarc
offline mode : False
user-agent : conda/4.3.13 requests/2.13.0 CPython/2.7.12 Linux/4.9.12-100.fc24.x86_64 Fedora/24 glibc/2.23
UID:GID : 1000:1000
# conda environments:
#
anaconda-platform /home/hp/bin/anaconda2/envs/anaconda-platform
kapsel * /home/hp/bin/anaconda2/envs/kapsel
kapsel-canary /home/hp/bin/anaconda2/envs/kapsel-canary
py2 /home/hp/bin/anaconda2/envs/py2
testing /home/hp/bin/anaconda2/envs/testing
root /home/hp/bin/anaconda2
sys.version: 2.7.12 |Anaconda 4.2.0 (64-bit)| (defaul...
sys.prefix: /home/hp/bin/anaconda2
sys.executable: /home/hp/bin/anaconda2/bin/python
conda location: /home/hp/bin/anaconda2/lib/python2.7/site-packages/conda
conda-build: /home/hp/bin/anaconda2/bin/conda-build
conda-convert: /home/hp/bin/anaconda2/bin/conda-convert
conda-develop: /home/hp/bin/anaconda2/bin/conda-develop
conda-env: /home/hp/bin/anaconda2/bin/conda-env
conda-index: /home/hp/bin/anaconda2/bin/conda-index
conda-inspect: /home/hp/bin/anaconda2/bin/conda-inspect
conda-kapsel: /home/hp/bin/anaconda2/envs/kapsel/bin/conda-kapsel
conda-metapackage: /home/hp/bin/anaconda2/bin/conda-metapackage
conda-render: /home/hp/bin/anaconda2/bin/conda-render
conda-server: /home/hp/bin/anaconda2/envs/kapsel/bin/conda-server
conda-sign: /home/hp/bin/anaconda2/bin/conda-sign
conda-skeleton: /home/hp/bin/anaconda2/bin/conda-skeleton
user site dirs:
CIO_TEST: <not set>
CONDA_DEFAULT_ENV: kapsel
CONDA_ENVS_PATH: <not set>
LD_LIBRARY_PATH: <not set>
PATH: /home/hp/bin/anaconda2/envs/kapsel/bin:/home/hp/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin
PYTHONHOME: <not set>
PYTHONPATH: <not set>
License directories:
/home/hp/.continuum
/home/hp/bin/anaconda2/licenses
License files (license*.txt):
/home/hp/.continuum/license_anaconda_repo_20161003210957.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160804160500.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160727174434.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728092403.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160830123618.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160803091557.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160830104354.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo.txt
Reading license file : 6
Signature valid : 6
Vendor match : 3
product : u'mkl-optimizations'
packages : u'mkl'
end_date : u'2017-05-24'
type : u'Trial'
product : u'iopro'
packages : u'iopro'
end_date : u'2017-05-24'
type : u'Trial'
product : u'accelerate'
packages : u'numbapro mkl'
end_date : u'2017-05-24'
type : u'Trial'
/home/hp/.continuum/license_anaconda_repo_20160823133054.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160927143648.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160803113033.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728095857.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728094900.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160830104619.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728093131.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20161003210908.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728094321.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
Package/feature end dates:
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
`$ /home/hp/bin/anaconda2/envs/kapsel/bin/conda info -a`
Traceback (most recent call last):
File "/home/hp/bin/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 591, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/hp/bin/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/home/hp/bin/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 324, in execute
show_info()
File "_license.pyx", line 363, in _license.show_info (_license.c:10610)
File "_license.pyx", line 310, in _license.get_end_dates (_license.c:9015)
File "_license.pyx", line 166, in _license.filter_vendor (_license.c:6214)
KeyError: 'vendor'
$ conda --version
conda 4.3.13
|
KeyError
|
def match_to_original_specs(specs, specs_for_prefix):
matches_any_spec = lambda dst: next(spc for spc in specs if spc.name == dst)
matched_specs_for_prefix = []
for prefix_with_dists in specs_for_prefix:
linked = linked_data(prefix_with_dists.prefix)
r = prefix_with_dists.r
new_matches = []
for spec in prefix_with_dists.specs:
matched = matches_any_spec(spec)
if matched:
new_matches.append(matched)
add_defaults_to_specs(r, linked, new_matches, prefix=prefix_with_dists.prefix)
matched_specs_for_prefix.append(
SpecsForPrefix(
prefix=prefix_with_dists.prefix,
r=prefix_with_dists.r,
specs=new_matches,
)
)
return matched_specs_for_prefix
|
def match_to_original_specs(str_specs, specs_for_prefix):
matches_any_spec = lambda dst: next(spc for spc in str_specs if spc.startswith(dst))
matched_specs_for_prefix = []
for prefix_with_dists in specs_for_prefix:
linked = linked_data(prefix_with_dists.prefix)
r = prefix_with_dists.r
new_matches = []
for spec in prefix_with_dists.specs:
matched = matches_any_spec(spec)
if matched:
new_matches.append(matched)
add_defaults_to_specs(r, linked, new_matches, prefix=prefix_with_dists.prefix)
matched_specs_for_prefix.append(
SpecsForPrefix(
prefix=prefix_with_dists.prefix,
r=prefix_with_dists.r,
specs=new_matches,
)
)
return matched_specs_for_prefix
|
https://github.com/conda/conda/issues/4849
|
$ conda info -a
Current conda install:
platform : linux-64
conda version : 4.3.13
conda is private : False
conda-env version : 4.3.13
conda-build version : 2.0.2
python version : 2.7.12.final.0
requests version : 2.13.0
root environment : /home/hp/bin/anaconda2 (writable)
default environment : /home/hp/bin/anaconda2/envs/kapsel
envs directories : /home/hp/bin/anaconda2/envs
/home/hp/.conda/envs
package cache : /home/hp/bin/anaconda2/pkgs
/home/hp/.conda/pkgs
channel URLs : https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
https://conda.anaconda.org/t/<TOKEN>/binstar/linux-64
https://conda.anaconda.org/t/<TOKEN>/binstar/noarch
config file : /home/hp/.condarc
offline mode : False
user-agent : conda/4.3.13 requests/2.13.0 CPython/2.7.12 Linux/4.9.12-100.fc24.x86_64 Fedora/24 glibc/2.23
UID:GID : 1000:1000
# conda environments:
#
anaconda-platform /home/hp/bin/anaconda2/envs/anaconda-platform
kapsel * /home/hp/bin/anaconda2/envs/kapsel
kapsel-canary /home/hp/bin/anaconda2/envs/kapsel-canary
py2 /home/hp/bin/anaconda2/envs/py2
testing /home/hp/bin/anaconda2/envs/testing
root /home/hp/bin/anaconda2
sys.version: 2.7.12 |Anaconda 4.2.0 (64-bit)| (defaul...
sys.prefix: /home/hp/bin/anaconda2
sys.executable: /home/hp/bin/anaconda2/bin/python
conda location: /home/hp/bin/anaconda2/lib/python2.7/site-packages/conda
conda-build: /home/hp/bin/anaconda2/bin/conda-build
conda-convert: /home/hp/bin/anaconda2/bin/conda-convert
conda-develop: /home/hp/bin/anaconda2/bin/conda-develop
conda-env: /home/hp/bin/anaconda2/bin/conda-env
conda-index: /home/hp/bin/anaconda2/bin/conda-index
conda-inspect: /home/hp/bin/anaconda2/bin/conda-inspect
conda-kapsel: /home/hp/bin/anaconda2/envs/kapsel/bin/conda-kapsel
conda-metapackage: /home/hp/bin/anaconda2/bin/conda-metapackage
conda-render: /home/hp/bin/anaconda2/bin/conda-render
conda-server: /home/hp/bin/anaconda2/envs/kapsel/bin/conda-server
conda-sign: /home/hp/bin/anaconda2/bin/conda-sign
conda-skeleton: /home/hp/bin/anaconda2/bin/conda-skeleton
user site dirs:
CIO_TEST: <not set>
CONDA_DEFAULT_ENV: kapsel
CONDA_ENVS_PATH: <not set>
LD_LIBRARY_PATH: <not set>
PATH: /home/hp/bin/anaconda2/envs/kapsel/bin:/home/hp/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin
PYTHONHOME: <not set>
PYTHONPATH: <not set>
License directories:
/home/hp/.continuum
/home/hp/bin/anaconda2/licenses
License files (license*.txt):
/home/hp/.continuum/license_anaconda_repo_20161003210957.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160804160500.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160727174434.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728092403.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160830123618.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160803091557.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160830104354.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo.txt
Reading license file : 6
Signature valid : 6
Vendor match : 3
product : u'mkl-optimizations'
packages : u'mkl'
end_date : u'2017-05-24'
type : u'Trial'
product : u'iopro'
packages : u'iopro'
end_date : u'2017-05-24'
type : u'Trial'
product : u'accelerate'
packages : u'numbapro mkl'
end_date : u'2017-05-24'
type : u'Trial'
/home/hp/.continuum/license_anaconda_repo_20160823133054.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160927143648.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160803113033.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728095857.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728094900.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160830104619.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728093131.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20161003210908.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728094321.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
Package/feature end dates:
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
`$ /home/hp/bin/anaconda2/envs/kapsel/bin/conda info -a`
Traceback (most recent call last):
File "/home/hp/bin/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 591, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/hp/bin/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/home/hp/bin/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 324, in execute
show_info()
File "_license.pyx", line 363, in _license.show_info (_license.c:10610)
File "_license.pyx", line 310, in _license.get_end_dates (_license.c:9015)
File "_license.pyx", line 166, in _license.filter_vendor (_license.c:6214)
KeyError: 'vendor'
$ conda --version
conda 4.3.13
|
KeyError
|
def get_actions_for_dists(
specs_by_prefix, only_names, index, force, always_copy, prune, update_deps, pinned
):
root_only = ("conda", "conda-env")
prefix = specs_by_prefix.prefix
r = specs_by_prefix.r
specs = [MatchSpec(s) for s in specs_by_prefix.specs]
specs = augment_specs(prefix, specs, pinned)
linked = linked_data(prefix)
must_have = odict()
installed = linked
if prune:
installed = []
pkgs = r.install(specs, installed, update_deps=update_deps)
for fn in pkgs:
dist = Dist(fn)
name = r.package_name(dist)
if not name or only_names and name not in only_names:
continue
must_have[name] = dist
if is_root_prefix(prefix):
# for name in foreign:
# if name in must_have:
# del must_have[name]
pass
elif basename(prefix).startswith("_"):
# anything (including conda) can be installed into environments
# starting with '_', mainly to allow conda-build to build conda
pass
elif any(s in must_have for s in root_only):
# the solver scheduled an install of conda, but it wasn't in the
# specs, so it must have been a dependency.
specs = [s for s in specs if r.depends_on(s, root_only)]
if specs:
raise InstallError(
"""\
Error: the following specs depend on 'conda' and can only be installed
into the root environment: %s"""
% (" ".join(spec.name for spec in specs),)
)
linked = [r.package_name(s) for s in linked]
linked = [s for s in linked if r.depends_on(s, root_only)]
if linked:
raise InstallError(
"""\
Error: one or more of the packages already installed depend on 'conda'
and should only be installed in the root environment: %s
These packages need to be removed before conda can proceed."""
% (" ".join(linked),)
)
raise InstallError(
"Error: 'conda' can only be installed into the root environment"
)
smh = r.dependency_sort(must_have)
actions = ensure_linked_actions(
smh, prefix, index=r.index, force=force, always_copy=always_copy
)
if actions[LINK]:
actions[SYMLINK_CONDA] = [context.root_prefix]
for dist in sorted(linked):
dist = Dist(dist)
name = r.package_name(dist)
replace_existing = name in must_have and dist != must_have[name]
prune_it = prune and dist not in smh
if replace_existing or prune_it:
add_unlink(actions, dist)
return actions
|
def get_actions_for_dists(
dists_for_prefix, only_names, index, force, always_copy, prune, update_deps, pinned
):
root_only = ("conda", "conda-env")
prefix = dists_for_prefix.prefix
dists = dists_for_prefix.specs
r = dists_for_prefix.r
specs = [MatchSpec(dist) for dist in dists]
specs = augment_specs(prefix, specs, pinned)
linked = linked_data(prefix)
must_have = odict()
installed = linked
if prune:
installed = []
pkgs = r.install(specs, installed, update_deps=update_deps)
for fn in pkgs:
dist = Dist(fn)
name = r.package_name(dist)
if not name or only_names and name not in only_names:
continue
must_have[name] = dist
if is_root_prefix(prefix):
# for name in foreign:
# if name in must_have:
# del must_have[name]
pass
elif basename(prefix).startswith("_"):
# anything (including conda) can be installed into environments
# starting with '_', mainly to allow conda-build to build conda
pass
elif any(s in must_have for s in root_only):
# the solver scheduled an install of conda, but it wasn't in the
# specs, so it must have been a dependency.
specs = [s for s in specs if r.depends_on(s, root_only)]
if specs:
raise InstallError(
"""\
Error: the following specs depend on 'conda' and can only be installed
into the root environment: %s"""
% (" ".join(spec.name for spec in specs),)
)
linked = [r.package_name(s) for s in linked]
linked = [s for s in linked if r.depends_on(s, root_only)]
if linked:
raise InstallError(
"""\
Error: one or more of the packages already installed depend on 'conda'
and should only be installed in the root environment: %s
These packages need to be removed before conda can proceed."""
% (" ".join(linked),)
)
raise InstallError(
"Error: 'conda' can only be installed into the root environment"
)
smh = r.dependency_sort(must_have)
actions = ensure_linked_actions(
smh, prefix, index=r.index, force=force, always_copy=always_copy
)
if actions[LINK]:
actions[SYMLINK_CONDA] = [context.root_prefix]
for dist in sorted(linked):
dist = Dist(dist)
name = r.package_name(dist)
replace_existing = name in must_have and dist != must_have[name]
prune_it = prune and dist not in smh
if replace_existing or prune_it:
add_unlink(actions, dist)
return actions
|
https://github.com/conda/conda/issues/4849
|
$ conda info -a
Current conda install:
platform : linux-64
conda version : 4.3.13
conda is private : False
conda-env version : 4.3.13
conda-build version : 2.0.2
python version : 2.7.12.final.0
requests version : 2.13.0
root environment : /home/hp/bin/anaconda2 (writable)
default environment : /home/hp/bin/anaconda2/envs/kapsel
envs directories : /home/hp/bin/anaconda2/envs
/home/hp/.conda/envs
package cache : /home/hp/bin/anaconda2/pkgs
/home/hp/.conda/pkgs
channel URLs : https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
https://conda.anaconda.org/t/<TOKEN>/binstar/linux-64
https://conda.anaconda.org/t/<TOKEN>/binstar/noarch
config file : /home/hp/.condarc
offline mode : False
user-agent : conda/4.3.13 requests/2.13.0 CPython/2.7.12 Linux/4.9.12-100.fc24.x86_64 Fedora/24 glibc/2.23
UID:GID : 1000:1000
# conda environments:
#
anaconda-platform /home/hp/bin/anaconda2/envs/anaconda-platform
kapsel * /home/hp/bin/anaconda2/envs/kapsel
kapsel-canary /home/hp/bin/anaconda2/envs/kapsel-canary
py2 /home/hp/bin/anaconda2/envs/py2
testing /home/hp/bin/anaconda2/envs/testing
root /home/hp/bin/anaconda2
sys.version: 2.7.12 |Anaconda 4.2.0 (64-bit)| (defaul...
sys.prefix: /home/hp/bin/anaconda2
sys.executable: /home/hp/bin/anaconda2/bin/python
conda location: /home/hp/bin/anaconda2/lib/python2.7/site-packages/conda
conda-build: /home/hp/bin/anaconda2/bin/conda-build
conda-convert: /home/hp/bin/anaconda2/bin/conda-convert
conda-develop: /home/hp/bin/anaconda2/bin/conda-develop
conda-env: /home/hp/bin/anaconda2/bin/conda-env
conda-index: /home/hp/bin/anaconda2/bin/conda-index
conda-inspect: /home/hp/bin/anaconda2/bin/conda-inspect
conda-kapsel: /home/hp/bin/anaconda2/envs/kapsel/bin/conda-kapsel
conda-metapackage: /home/hp/bin/anaconda2/bin/conda-metapackage
conda-render: /home/hp/bin/anaconda2/bin/conda-render
conda-server: /home/hp/bin/anaconda2/envs/kapsel/bin/conda-server
conda-sign: /home/hp/bin/anaconda2/bin/conda-sign
conda-skeleton: /home/hp/bin/anaconda2/bin/conda-skeleton
user site dirs:
CIO_TEST: <not set>
CONDA_DEFAULT_ENV: kapsel
CONDA_ENVS_PATH: <not set>
LD_LIBRARY_PATH: <not set>
PATH: /home/hp/bin/anaconda2/envs/kapsel/bin:/home/hp/bin:/usr/lib64/qt-3.3/bin:/usr/lib64/ccache:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin
PYTHONHOME: <not set>
PYTHONPATH: <not set>
License directories:
/home/hp/.continuum
/home/hp/bin/anaconda2/licenses
License files (license*.txt):
/home/hp/.continuum/license_anaconda_repo_20161003210957.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160804160500.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160727174434.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728092403.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160830123618.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160803091557.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160830104354.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo.txt
Reading license file : 6
Signature valid : 6
Vendor match : 3
product : u'mkl-optimizations'
packages : u'mkl'
end_date : u'2017-05-24'
type : u'Trial'
product : u'iopro'
packages : u'iopro'
end_date : u'2017-05-24'
type : u'Trial'
product : u'accelerate'
packages : u'numbapro mkl'
end_date : u'2017-05-24'
type : u'Trial'
/home/hp/.continuum/license_anaconda_repo_20160823133054.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160927143648.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160803113033.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728095857.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728094900.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160830104619.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728093131.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20161003210908.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
/home/hp/.continuum/license_anaconda_repo_20160728094321.txt
Reading license file : 1
Error: no signature in license: {u'license': u'test'}
Signature valid : 0
Vendor match : 0
Package/feature end dates:
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
`$ /home/hp/bin/anaconda2/envs/kapsel/bin/conda info -a`
Traceback (most recent call last):
File "/home/hp/bin/anaconda2/lib/python2.7/site-packages/conda/exceptions.py", line 591, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/hp/bin/anaconda2/lib/python2.7/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/home/hp/bin/anaconda2/lib/python2.7/site-packages/conda/cli/main_info.py", line 324, in execute
show_info()
File "_license.pyx", line 363, in _license.show_info (_license.c:10610)
File "_license.pyx", line 310, in _license.get_end_dates (_license.c:9015)
File "_license.pyx", line 166, in _license.filter_vendor (_license.c:6214)
KeyError: 'vendor'
$ conda --version
conda 4.3.13
|
KeyError
|
def __call__(self, *args, **kw):
newargs = []
for arg in args:
if isinstance(arg, list):
newargs.append(tuple(arg))
elif not isinstance(arg, Hashable):
# uncacheable. a list, for instance.
# better to not cache than blow up.
return self.func(*args, **kw)
else:
newargs.append(arg)
newargs = tuple(newargs)
key = (newargs, frozenset(sorted(kw.items())))
with self.lock:
if key in self.cache:
return self.cache[key]
else:
value = self.func(*args, **kw)
self.cache[key] = value
return value
|
def __call__(self, *args, **kw):
newargs = []
for arg in args:
if isinstance(arg, list):
newargs.append(tuple(arg))
elif not isinstance(arg, collections.Hashable):
# uncacheable. a list, for instance.
# better to not cache than blow up.
return self.func(*args, **kw)
else:
newargs.append(arg)
newargs = tuple(newargs)
key = (newargs, frozenset(sorted(kw.items())))
with self.lock:
if key in self.cache:
return self.cache[key]
else:
value = self.func(*args, **kw)
self.cache[key] = value
return value
|
https://github.com/conda/conda/issues/5022
|
$ conda install pandas
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Traceback (most recent call last):
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 591, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 98, in _main
imported = importlib.import_module(module)
File "/home/simmi/anaconda3/lib/python3.6/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 978, in _gcd_import
File "<frozen importlib._bootstrap>", line 961, in _find_and_load
File "<frozen importlib._bootstrap>", line 950, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 655, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 678, in exec_module
File "<frozen importlib._bootstrap>", line 205, in _call_with_frames_removed
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/cli/main_list.py", line 20, in <module>
from ..egg_info import get_egg_info
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/egg_info.py", line 15, in <module>
from .misc import rel_path
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/misc.py", line 19, in <module>
from .core.index import get_index, _supplement_index_with_cache
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/core/index.py", line 8, in <module>
from .package_cache import PackageCache
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 9, in <module>
from .path_actions import CacheUrlAction, ExtractPackageAction
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/core/path_actions.py", line 32, in <module>
from ..gateways.download import download
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/gateways/download.py", line 15, in <module>
from ..connection import CondaSession
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/connection.py", line 42, in <module>
glibc_ver = gnu_get_libc_version()
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/utils.py", line 45, in __call__
value = self.func(*args, **kw)
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/utils.py", line 82, in gnu_get_libc_version
from ctypes import CDLL, cdll, c_char_p
File "/home/simmi/anaconda3/lib/python3.6/ctypes/__init__.py", line 7, in <module>
from _ctypes import Union, Structure, Array
ImportError: /home/simmi/anaconda3/lib/python3.6/lib-dynload/_ctypes.cpython-36m-x86_64-linux-gnu.so: undefined symbol: PySlice_Unpack
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/simmi/anaconda3/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/cli/main.py", line 164, in main
return conda_exception_handler(_main, *args)
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 607, in conda_exception_handler
print_unexpected_error_message(e)
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 561, in print_unexpected_error_message
info_stdout, info_stderr = get_info()
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 531, in get_info
args.func(args, p)
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/cli/main_info.py", line 142, in execute
from conda.api import get_index
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/api.py", line 1, in <module>
from .core.index import get_index
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/core/index.py", line 8, in <module>
from .package_cache import PackageCache
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/core/package_cache.py", line 9, in <module>
from .path_actions import CacheUrlAction, ExtractPackageAction
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/core/path_actions.py", line 32, in <module>
from ..gateways.download import download
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/gateways/download.py", line 15, in <module>
from ..connection import CondaSession
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/connection.py", line 42, in <module>
glibc_ver = gnu_get_libc_version()
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/utils.py", line 45, in __call__
value = self.func(*args, **kw)
File "/home/simmi/anaconda3/lib/python3.6/site-packages/conda/utils.py", line 82, in gnu_get_libc_version
from ctypes import CDLL, cdll, c_char_p
File "/home/simmi/anaconda3/lib/python3.6/ctypes/__init__.py", line 7, in <module>
from _ctypes import Union, Structure, Array
ImportError: /home/simmi/anaconda3/lib/python3.6/lib-dynload/_ctypes.cpython-36m-x86_64-linux-gnu.so: undefined symbol: PySlice_Unpack```
|
ImportError
|
def configure_parser(sub_parsers):
from .common import (
add_parser_help,
add_parser_json,
add_parser_prefix,
add_parser_show_channel_urls,
)
p = sub_parsers.add_parser(
"list",
description=descr,
help=descr,
formatter_class=RawDescriptionHelpFormatter,
epilog=examples,
add_help=False,
)
add_parser_help(p)
add_parser_prefix(p)
add_parser_json(p)
add_parser_show_channel_urls(p)
p.add_argument(
"-c",
"--canonical",
action="store_true",
help="Output canonical names of packages only. Implies --no-pip. ",
)
p.add_argument(
"-f",
"--full-name",
action="store_true",
help="Only search for full names, i.e., ^<regex>$.",
)
p.add_argument(
"--explicit",
action="store_true",
help="List explicitly all installed conda packaged with URL "
"(output may be used by conda create --file).",
)
p.add_argument(
"--md5",
action="store_true",
help="Add MD5 hashsum when using --explicit",
)
p.add_argument(
"-e",
"--export",
action="store_true",
help="Output requirement string only (output may be used by "
" conda create --file).",
)
p.add_argument(
"-r",
"--revisions",
action="store_true",
help="List the revision history and exit.",
)
p.add_argument(
"--no-pip",
action="store_false",
default=True,
dest="pip",
help="Do not include pip-only installed packages.",
)
p.add_argument(
"regex",
action="store",
nargs="?",
help="List only packages matching this regular expression.",
)
p.set_defaults(func=execute)
|
def configure_parser(sub_parsers):
p = sub_parsers.add_parser(
"list",
description=descr,
help=descr,
formatter_class=RawDescriptionHelpFormatter,
epilog=examples,
add_help=False,
)
add_parser_help(p)
add_parser_prefix(p)
add_parser_json(p)
add_parser_show_channel_urls(p)
p.add_argument(
"-c",
"--canonical",
action="store_true",
help="Output canonical names of packages only. Implies --no-pip. ",
)
p.add_argument(
"-f",
"--full-name",
action="store_true",
help="Only search for full names, i.e., ^<regex>$.",
)
p.add_argument(
"--explicit",
action="store_true",
help="List explicitly all installed conda packaged with URL "
"(output may be used by conda create --file).",
)
p.add_argument(
"--md5",
action="store_true",
help="Add MD5 hashsum when using --explicit",
)
p.add_argument(
"-e",
"--export",
action="store_true",
help="Output requirement string only (output may be used by "
" conda create --file).",
)
p.add_argument(
"-r",
"--revisions",
action="store_true",
help="List the revision history and exit.",
)
p.add_argument(
"--no-pip",
action="store_false",
default=True,
dest="pip",
help="Do not include pip-only installed packages.",
)
p.add_argument(
"regex",
action="store",
nargs="?",
help="List only packages matching this regular expression.",
)
p.set_defaults(func=execute)
|
https://github.com/conda/conda/issues/5028
|
Traceback (most recent call last):
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 98, in _main
imported = importlib.import_module(module)
File "/Users/tasalta/anaconda/lib/python2.7/importlib/__init__.py", line 37, in import_module
__import__(name)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main_list.py", line 20, in <module>
from ..egg_info import get_egg_info
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/egg_info.py", line 15, in <module>
from .misc import rel_path
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/misc.py", line 19, in <module>
from .core.index import get_index, _supplement_index_with_cache
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: cannot import name InsecureRequestWarning
at throwCondaError (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:117:9)
at runConda (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:146:5)
at Object.info (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:395:10)
at Object.isGLCLauncherReady (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/systemState.js:207:27)
at [object Object].onWindowOpen [as _onTimeout] (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/main.js:144:57)
at Timer.listOnTimeout (timers.js:89:15)
|
ImportError
|
def print_export_header(subdir):
print("# This file may be used to create an environment using:")
print("# $ conda create --name <env> --file <this file>")
print("# platform: %s" % subdir)
|
def print_export_header():
print("# This file may be used to create an environment using:")
print("# $ conda create --name <env> --file <this file>")
print("# platform: %s" % context.subdir)
|
https://github.com/conda/conda/issues/5028
|
Traceback (most recent call last):
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 98, in _main
imported = importlib.import_module(module)
File "/Users/tasalta/anaconda/lib/python2.7/importlib/__init__.py", line 37, in import_module
__import__(name)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main_list.py", line 20, in <module>
from ..egg_info import get_egg_info
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/egg_info.py", line 15, in <module>
from .misc import rel_path
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/misc.py", line 19, in <module>
from .core.index import get_index, _supplement_index_with_cache
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: cannot import name InsecureRequestWarning
at throwCondaError (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:117:9)
at runConda (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:146:5)
at Object.info (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:395:10)
at Object.isGLCLauncherReady (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/systemState.js:207:27)
at [object Object].onWindowOpen [as _onTimeout] (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/main.js:144:57)
at Timer.listOnTimeout (timers.js:89:15)
|
ImportError
|
def list_packages(
prefix, installed, regex=None, format="human", show_channel_urls=None
):
from .common import disp_features
from ..base.constants import DEFAULTS_CHANNEL_NAME
from ..base.context import context
from ..core.linked_data import is_linked
res = 0
result = []
for dist in get_packages(installed, regex):
if format == "canonical":
result.append(dist)
continue
if format == "export":
result.append("=".join(dist.quad[:3]))
continue
try:
# Returns None if no meta-file found (e.g. pip install)
info = is_linked(prefix, dist)
features = set(info.get("features", "").split())
disp = "%(name)-25s %(version)-15s %(build)15s" % info
disp += " %s" % disp_features(features)
schannel = info.get("schannel")
show_channel_urls = show_channel_urls or context.show_channel_urls
if (
show_channel_urls
or show_channel_urls is None
and schannel != DEFAULTS_CHANNEL_NAME
):
disp += " %s" % schannel
result.append(disp)
except (AttributeError, IOError, KeyError, ValueError) as e:
log.debug("exception for dist %s:\n%r", dist, e)
result.append("%-25s %-15s %15s" % tuple(dist.quad[:3]))
return res, result
|
def list_packages(
prefix,
installed,
regex=None,
format="human",
show_channel_urls=context.show_channel_urls,
):
res = 0
result = []
for dist in get_packages(installed, regex):
if format == "canonical":
result.append(dist)
continue
if format == "export":
result.append("=".join(dist.quad[:3]))
continue
try:
# Returns None if no meta-file found (e.g. pip install)
info = is_linked(prefix, dist)
features = set(info.get("features", "").split())
disp = "%(name)-25s %(version)-15s %(build)15s" % info
disp += " %s" % disp_features(features)
schannel = info.get("schannel")
if (
show_channel_urls
or show_channel_urls is None
and schannel != DEFAULTS_CHANNEL_NAME
):
disp += " %s" % schannel
result.append(disp)
except (AttributeError, IOError, KeyError, ValueError) as e:
log.debug("exception for dist %s:\n%r", dist, e)
result.append("%-25s %-15s %15s" % tuple(dist.quad[:3]))
return res, result
|
https://github.com/conda/conda/issues/5028
|
Traceback (most recent call last):
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 98, in _main
imported = importlib.import_module(module)
File "/Users/tasalta/anaconda/lib/python2.7/importlib/__init__.py", line 37, in import_module
__import__(name)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main_list.py", line 20, in <module>
from ..egg_info import get_egg_info
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/egg_info.py", line 15, in <module>
from .misc import rel_path
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/misc.py", line 19, in <module>
from .core.index import get_index, _supplement_index_with_cache
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: cannot import name InsecureRequestWarning
at throwCondaError (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:117:9)
at runConda (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:146:5)
at Object.info (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:395:10)
at Object.isGLCLauncherReady (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/systemState.js:207:27)
at [object Object].onWindowOpen [as _onTimeout] (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/main.js:144:57)
at Timer.listOnTimeout (timers.js:89:15)
|
ImportError
|
def print_packages(
prefix,
regex=None,
format="human",
piplist=False,
json=False,
show_channel_urls=None,
):
from .common import stdout_json
from ..base.context import context
from ..common.compat import text_type
from ..core.linked_data import linked
from ..egg_info import get_egg_info
if not isdir(prefix):
from ..exceptions import CondaEnvironmentNotFoundError
raise CondaEnvironmentNotFoundError(prefix)
if not json:
if format == "human":
print("# packages in environment at %s:" % prefix)
print("#")
if format == "export":
print_export_header(context.subdir)
installed = linked(prefix)
log.debug("installed conda packages:\n%s", installed)
if piplist and context.use_pip and format == "human":
other_python = get_egg_info(prefix)
log.debug("other installed python packages:\n%s", other_python)
installed.update(other_python)
exitcode, output = list_packages(
prefix, installed, regex, format=format, show_channel_urls=show_channel_urls
)
if not json:
print("\n".join(map(text_type, output)))
else:
stdout_json(output)
return exitcode
|
def print_packages(
prefix,
regex=None,
format="human",
piplist=False,
json=False,
show_channel_urls=context.show_channel_urls,
):
if not isdir(prefix):
raise CondaEnvironmentNotFoundError(prefix)
if not json:
if format == "human":
print("# packages in environment at %s:" % prefix)
print("#")
if format == "export":
print_export_header()
installed = linked(prefix)
log.debug("installed conda packages:\n%s", installed)
if piplist and context.use_pip and format == "human":
other_python = get_egg_info(prefix)
log.debug("other installed python packages:\n%s", other_python)
installed.update(other_python)
exitcode, output = list_packages(
prefix, installed, regex, format=format, show_channel_urls=show_channel_urls
)
if not json:
print("\n".join(map(text_type, output)))
else:
stdout_json(output)
return exitcode
|
https://github.com/conda/conda/issues/5028
|
Traceback (most recent call last):
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 98, in _main
imported = importlib.import_module(module)
File "/Users/tasalta/anaconda/lib/python2.7/importlib/__init__.py", line 37, in import_module
__import__(name)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main_list.py", line 20, in <module>
from ..egg_info import get_egg_info
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/egg_info.py", line 15, in <module>
from .misc import rel_path
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/misc.py", line 19, in <module>
from .core.index import get_index, _supplement_index_with_cache
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: cannot import name InsecureRequestWarning
at throwCondaError (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:117:9)
at runConda (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:146:5)
at Object.info (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:395:10)
at Object.isGLCLauncherReady (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/systemState.js:207:27)
at [object Object].onWindowOpen [as _onTimeout] (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/main.js:144:57)
at Timer.listOnTimeout (timers.js:89:15)
|
ImportError
|
def print_explicit(prefix, add_md5=False):
from ..base.constants import UNKNOWN_CHANNEL
from ..base.context import context
from ..core.linked_data import linked_data
if not isdir(prefix):
from ..exceptions import CondaEnvironmentNotFoundError
raise CondaEnvironmentNotFoundError(prefix)
print_export_header(context.subdir)
print("@EXPLICIT")
for meta in sorted(linked_data(prefix).values(), key=lambda x: x["name"]):
url = meta.get("url")
if not url or url.startswith(UNKNOWN_CHANNEL):
print("# no URL for: %s" % meta["fn"])
continue
md5 = meta.get("md5")
print(url + ("#%s" % md5 if add_md5 and md5 else ""))
|
def print_explicit(prefix, add_md5=False):
if not isdir(prefix):
raise CondaEnvironmentNotFoundError(prefix)
print_export_header()
print("@EXPLICIT")
for meta in sorted(linked_data(prefix).values(), key=lambda x: x["name"]):
url = meta.get("url")
if not url or url.startswith(UNKNOWN_CHANNEL):
print("# no URL for: %s" % meta["fn"])
continue
md5 = meta.get("md5")
print(url + ("#%s" % md5 if add_md5 and md5 else ""))
|
https://github.com/conda/conda/issues/5028
|
Traceback (most recent call last):
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 98, in _main
imported = importlib.import_module(module)
File "/Users/tasalta/anaconda/lib/python2.7/importlib/__init__.py", line 37, in import_module
__import__(name)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main_list.py", line 20, in <module>
from ..egg_info import get_egg_info
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/egg_info.py", line 15, in <module>
from .misc import rel_path
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/misc.py", line 19, in <module>
from .core.index import get_index, _supplement_index_with_cache
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: cannot import name InsecureRequestWarning
at throwCondaError (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:117:9)
at runConda (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:146:5)
at Object.info (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:395:10)
at Object.isGLCLauncherReady (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/systemState.js:207:27)
at [object Object].onWindowOpen [as _onTimeout] (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/main.js:144:57)
at Timer.listOnTimeout (timers.js:89:15)
|
ImportError
|
def execute(args, parser):
from ..base.context import context
from .common import stdout_json
prefix = context.prefix_w_legacy_search
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
if args.revisions:
from ..history import History
h = History(prefix)
if isfile(h.path):
if not context.json:
h.print_log()
else:
stdout_json(h.object_log())
else:
from ..exceptions import CondaFileNotFoundError
raise CondaFileNotFoundError(h.path)
return
if args.explicit:
print_explicit(prefix, args.md5)
return
if args.canonical:
format = "canonical"
elif args.export:
format = "export"
else:
format = "human"
if context.json:
format = "canonical"
exitcode = print_packages(
prefix,
regex,
format,
piplist=args.pip,
json=context.json,
show_channel_urls=context.show_channel_urls,
)
return exitcode
|
def execute(args, parser):
prefix = context.prefix_w_legacy_search
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
if args.revisions:
from ..history import History
h = History(prefix)
if isfile(h.path):
if not context.json:
h.print_log()
else:
stdout_json(h.object_log())
else:
raise CondaFileNotFoundError(h.path)
return
if args.explicit:
print_explicit(prefix, args.md5)
return
if args.canonical:
format = "canonical"
elif args.export:
format = "export"
else:
format = "human"
if context.json:
format = "canonical"
exitcode = print_packages(
prefix,
regex,
format,
piplist=args.pip,
json=context.json,
show_channel_urls=context.show_channel_urls,
)
return exitcode
|
https://github.com/conda/conda/issues/5028
|
Traceback (most recent call last):
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 98, in _main
imported = importlib.import_module(module)
File "/Users/tasalta/anaconda/lib/python2.7/importlib/__init__.py", line 37, in import_module
__import__(name)
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/cli/main_list.py", line 20, in <module>
from ..egg_info import get_egg_info
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/egg_info.py", line 15, in <module>
from .misc import rel_path
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/misc.py", line 19, in <module>
from .core.index import get_index, _supplement_index_with_cache
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/index.py", line 9, in <module>
from .repodata import collect_all_repodata
File "/Users/tasalta/anaconda/lib/python2.7/site-packages/conda/core/repodata.py", line 21, in <module>
from requests.packages.urllib3.exceptions import InsecureRequestWarning
ImportError: cannot import name InsecureRequestWarning
at throwCondaError (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:117:9)
at runConda (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:146:5)
at Object.info (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/conda.js:395:10)
at Object.isGLCLauncherReady (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/utils/systemState.js:207:27)
at [object Object].onWindowOpen [as _onTimeout] (/Applications/GraphLab Create Launcher.app/Contents/Resources/app.asar/main.js:144:57)
at Timer.listOnTimeout (timers.js:89:15)
|
ImportError
|
def _init_packages_map(self):
if self.__packages_map is not None:
return self.__packages_map
self.__packages_map = __packages_map = {}
pkgs_dir = self.pkgs_dir
if not isdir(pkgs_dir):
return __packages_map
def _add_entry(__packages_map, pkgs_dir, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
dist = first(
self.urls_data, lambda x: basename(x) == package_filename, apply=Dist
)
if not dist:
dist = Dist.from_string(package_filename, channel_override=UNKNOWN_CHANNEL)
pc_entry = PackageCacheEntry.make_legacy(pkgs_dir, dist)
__packages_map[pc_entry.dist] = pc_entry
def dedupe_pkgs_dir_contents(pkgs_dir_contents):
# if both 'six-1.10.0-py35_0/' and 'six-1.10.0-py35_0.tar.bz2' are in pkgs_dir,
# only 'six-1.10.0-py35_0.tar.bz2' will be in the return contents
if not pkgs_dir_contents:
return []
contents = []
def _process(x, y):
if x + CONDA_TARBALL_EXTENSION != y:
contents.append(x)
return y
last = reduce(_process, sorted(pkgs_dir_contents))
_process(last, contents and contents[-1] or "")
return contents
pkgs_dir_contents = dedupe_pkgs_dir_contents(listdir(pkgs_dir))
for base_name in pkgs_dir_contents:
full_path = join(pkgs_dir, base_name)
if islink(full_path):
continue
elif (
(isdir(full_path) and isfile(join(full_path, "info", "index.json")))
or isfile(full_path)
and full_path.endswith(CONDA_TARBALL_EXTENSION)
):
_add_entry(__packages_map, pkgs_dir, base_name)
return __packages_map
|
def _init_packages_map(self):
if self.__packages_map is not None:
return self.__packages_map
self.__packages_map = __packages_map = {}
pkgs_dir = self.pkgs_dir
if not isdir(pkgs_dir):
return __packages_map
def _add_entry(__packages_map, pkgs_dir, package_filename):
if not package_filename.endswith(CONDA_TARBALL_EXTENSION):
package_filename += CONDA_TARBALL_EXTENSION
dist = first(
self.urls_data, lambda x: basename(x) == package_filename, apply=Dist
)
if not dist:
dist = Dist.from_string(package_filename, channel_override=UNKNOWN_CHANNEL)
pc_entry = PackageCacheEntry.make_legacy(pkgs_dir, dist)
__packages_map[pc_entry.dist] = pc_entry
def dedupe_pkgs_dir_contents(pkgs_dir_contents):
# if both 'six-1.10.0-py35_0/' and 'six-1.10.0-py35_0.tar.bz2' are in pkgs_dir,
# only 'six-1.10.0-py35_0.tar.bz2' will be in the return contents
contents = []
def _process(x, y):
if x + CONDA_TARBALL_EXTENSION != y:
contents.append(x)
return y
last = reduce(_process, sorted(pkgs_dir_contents))
_process(last, contents and contents[-1] or "")
return contents
pkgs_dir_contents = dedupe_pkgs_dir_contents(listdir(pkgs_dir))
for base_name in pkgs_dir_contents:
full_path = join(pkgs_dir, base_name)
if islink(full_path):
continue
elif (
(isdir(full_path) and isfile(join(full_path, "info", "index.json")))
or isfile(full_path)
and full_path.endswith(CONDA_TARBALL_EXTENSION)
):
_add_entry(__packages_map, pkgs_dir, base_name)
return __packages_map
|
https://github.com/conda/conda/issues/4840
|
$ conda install conda=4.3.13
Fetching package metadata .........
Solving package specifications: .
Package plan for installation in environment /localdisk/work/tmtomash/miniconda3:
The following packages will be DOWNGRADED due to dependency conflicts:
conda: 4.3.14-py35_0 --> 4.3.13-py35_0
Proceed ([y]/n)? y
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.3.14
conda is private : False
conda-env version : 4.3.14
conda-build version : 2.1.5
python version : 3.5.2.final.0
requests version : 2.12.4
root environment : /localdisk/work/tmtomash/miniconda3 (writable)
default environment : /localdisk/work/tmtomash/miniconda3
envs directories : /localdisk/work/tmtomash/miniconda3/envs
/nfs/site/home/tmtomash/.conda/envs
package cache : /localdisk/work/tmtomash/miniconda3/pkgs
/nfs/site/home/tmtomash/.conda/pkgs
channel URLs : https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
config file : /nfs/site/home/tmtomash/.condarc
offline mode : False
user-agent : conda/4.3.14 requests/2.12.4 CPython/3.5.2 Linux/4.4.0-59-generic debian/stretch/sid glibc/2.23
UID:GID : 11573498:22002
`$ /localdisk/work/tmtomash/miniconda3/bin/conda install conda=4.3.13`
Traceback (most recent call last):
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/cli/install.py", line 359, in install
execute_actions(actions, index, verbose=not context.quiet)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/plan.py", line 798, in execute_actions
plan = plan_from_actions(actions, index)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/plan.py", line 338, in plan_from_actions
plan = inject_UNLINKLINKTRANSACTION(plan, index, prefix)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/plan.py", line 302, in inject_UNLINKLINKTRANSACTION
pfe.prepare()
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 465, in prepare
for dist in self.link_dists)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 465, in <genexpr>
for dist in self.link_dists)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 388, in make_actions_for_dist
key=lambda pce: pce and pce.is_extracted and pce.tarball_matches_md5_if(md5)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/_vendor/auxlib/collection.py", line 88, in first
return next((apply(x) for x in seq if key(x)), default() if callable(default) else default)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/_vendor/auxlib/collection.py", line 88, in <genexpr>
return next((apply(x) for x in seq if key(x)), default() if callable(default) else default)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 387, in <genexpr>
(PackageCache(pkgs_dir).get(dist) for pkgs_dir in context.pkgs_dirs),
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 347, in get
return self._packages_map.get(dist, default)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 251, in _packages_map
return self.__packages_map or self._init_packages_map()
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 287, in _init_packages_map
pkgs_dir_contents = dedupe_pkgs_dir_contents(listdir(pkgs_dir))
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 283, in dedupe_pkgs_dir_contents
last = reduce(_process, sorted(pkgs_dir_contents))
TypeError: reduce() of empty sequence with no initial value
|
TypeError
|
def dedupe_pkgs_dir_contents(pkgs_dir_contents):
# if both 'six-1.10.0-py35_0/' and 'six-1.10.0-py35_0.tar.bz2' are in pkgs_dir,
# only 'six-1.10.0-py35_0.tar.bz2' will be in the return contents
if not pkgs_dir_contents:
return []
contents = []
def _process(x, y):
if x + CONDA_TARBALL_EXTENSION != y:
contents.append(x)
return y
last = reduce(_process, sorted(pkgs_dir_contents))
_process(last, contents and contents[-1] or "")
return contents
|
def dedupe_pkgs_dir_contents(pkgs_dir_contents):
# if both 'six-1.10.0-py35_0/' and 'six-1.10.0-py35_0.tar.bz2' are in pkgs_dir,
# only 'six-1.10.0-py35_0.tar.bz2' will be in the return contents
contents = []
def _process(x, y):
if x + CONDA_TARBALL_EXTENSION != y:
contents.append(x)
return y
last = reduce(_process, sorted(pkgs_dir_contents))
_process(last, contents and contents[-1] or "")
return contents
|
https://github.com/conda/conda/issues/4840
|
$ conda install conda=4.3.13
Fetching package metadata .........
Solving package specifications: .
Package plan for installation in environment /localdisk/work/tmtomash/miniconda3:
The following packages will be DOWNGRADED due to dependency conflicts:
conda: 4.3.14-py35_0 --> 4.3.13-py35_0
Proceed ([y]/n)? y
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.3.14
conda is private : False
conda-env version : 4.3.14
conda-build version : 2.1.5
python version : 3.5.2.final.0
requests version : 2.12.4
root environment : /localdisk/work/tmtomash/miniconda3 (writable)
default environment : /localdisk/work/tmtomash/miniconda3
envs directories : /localdisk/work/tmtomash/miniconda3/envs
/nfs/site/home/tmtomash/.conda/envs
package cache : /localdisk/work/tmtomash/miniconda3/pkgs
/nfs/site/home/tmtomash/.conda/pkgs
channel URLs : https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
config file : /nfs/site/home/tmtomash/.condarc
offline mode : False
user-agent : conda/4.3.14 requests/2.12.4 CPython/3.5.2 Linux/4.4.0-59-generic debian/stretch/sid glibc/2.23
UID:GID : 11573498:22002
`$ /localdisk/work/tmtomash/miniconda3/bin/conda install conda=4.3.13`
Traceback (most recent call last):
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/exceptions.py", line 573, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/cli/main.py", line 134, in _main
exit_code = args.func(args, p)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/cli/install.py", line 359, in install
execute_actions(actions, index, verbose=not context.quiet)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/plan.py", line 798, in execute_actions
plan = plan_from_actions(actions, index)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/plan.py", line 338, in plan_from_actions
plan = inject_UNLINKLINKTRANSACTION(plan, index, prefix)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/plan.py", line 302, in inject_UNLINKLINKTRANSACTION
pfe.prepare()
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 465, in prepare
for dist in self.link_dists)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 465, in <genexpr>
for dist in self.link_dists)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 388, in make_actions_for_dist
key=lambda pce: pce and pce.is_extracted and pce.tarball_matches_md5_if(md5)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/_vendor/auxlib/collection.py", line 88, in first
return next((apply(x) for x in seq if key(x)), default() if callable(default) else default)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/_vendor/auxlib/collection.py", line 88, in <genexpr>
return next((apply(x) for x in seq if key(x)), default() if callable(default) else default)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 387, in <genexpr>
(PackageCache(pkgs_dir).get(dist) for pkgs_dir in context.pkgs_dirs),
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 347, in get
return self._packages_map.get(dist, default)
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 251, in _packages_map
return self.__packages_map or self._init_packages_map()
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 287, in _init_packages_map
pkgs_dir_contents = dedupe_pkgs_dir_contents(listdir(pkgs_dir))
File "/localdisk/work/tmtomash/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 283, in dedupe_pkgs_dir_contents
last = reduce(_process, sorted(pkgs_dir_contents))
TypeError: reduce() of empty sequence with no initial value
|
TypeError
|
def error(self, message):
import re
import subprocess
from .find_commands import find_executable
exc = sys.exc_info()[1]
if exc:
# this is incredibly lame, but argparse stupidly does not expose
# reasonable hooks for customizing error handling
if hasattr(exc, "argument_name"):
argument = self._get_action_from_name(exc.argument_name)
else:
argument = None
if argument and argument.dest == "cmd":
m = re.compile(r"invalid choice: '([\w\-]+)'").match(exc.message)
if m:
cmd = m.group(1)
executable = find_executable("conda-" + cmd)
if not executable:
raise CommandNotFoundError(cmd)
args = [find_executable("conda-" + cmd)]
args.extend(sys.argv[2:])
p = subprocess.Popen(args)
try:
p.communicate()
except KeyboardInterrupt:
p.wait()
finally:
sys.exit(p.returncode)
super(ArgumentParser, self).error(message)
|
def error(self, message):
import re
import subprocess
from .find_commands import find_executable
exc = sys.exc_info()[1]
if exc:
# this is incredibly lame, but argparse stupidly does not expose
# reasonable hooks for customizing error handling
if hasattr(exc, "argument_name"):
argument = self._get_action_from_name(exc.argument_name)
else:
argument = None
if argument and argument.dest == "cmd":
m = re.compile(r"invalid choice: '([\w\-]+)'").match(exc.message)
if m:
cmd = m.group(1)
executable = find_executable("conda-" + cmd)
if not executable:
if cmd in build_commands:
raise CommandNotFoundError(
cmd,
"""
Error: You need to install conda-build in order to
use the "conda %s" command."""
% cmd,
)
else:
message = "Error: Could not locate 'conda-%s'" % cmd
possibilities = (
set(argument.choices.keys())
| build_commands
| set(find_commands())
)
close = get_close_matches(cmd, possibilities)
if close:
message += "\n\nDid you mean one of these?\n"
for s in close:
message += " %s" % s
raise CommandNotFoundError(cmd, message)
args = [find_executable("conda-" + cmd)]
args.extend(sys.argv[2:])
p = subprocess.Popen(args)
try:
p.communicate()
except KeyboardInterrupt:
p.wait()
finally:
sys.exit(p.returncode)
super(ArgumentParser, self).error(message)
|
https://github.com/conda/conda/issues/4944
|
(root) [root@d4cb01a1b5b6 ~]# conda activate
Traceback (most recent call last):
File "/conda/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/conda/lib/python2.7/site-packages/conda/cli/main.py", line 161, in main
raise CommandNotFoundError(argv1, message)
TypeError: __init__() takes exactly 2 arguments (3 given)
|
TypeError
|
def main(*args):
if not args:
args = sys.argv
if not args:
args = sys.argv
log.debug("conda.cli.main called with %s", args)
if len(args) > 1:
try:
argv1 = args[1].strip()
if argv1.startswith(".."):
import conda.cli.activate as activate
activate.main()
return
if argv1 in ("activate", "deactivate"):
from ..exceptions import CommandNotFoundError
raise CommandNotFoundError(argv1)
except Exception as e:
from ..exceptions import handle_exception
return handle_exception(e)
from ..exceptions import conda_exception_handler
return conda_exception_handler(_main, *args)
|
def main(*args):
if not args:
args = sys.argv
if not args:
args = sys.argv
log.debug("conda.cli.main called with %s", args)
if len(args) > 1:
try:
argv1 = args[1].strip()
if argv1.startswith(".."):
import conda.cli.activate as activate
activate.main()
return
if argv1 in ("activate", "deactivate"):
message = "'%s' is not a conda command.\n" % argv1
from ..common.compat import on_win
if not on_win:
message += ' Did you mean "source %s" ?\n' % " ".join(args[1:])
from ..exceptions import CommandNotFoundError
raise CommandNotFoundError(argv1, message)
except Exception as e:
from ..exceptions import handle_exception
return handle_exception(e)
from ..exceptions import conda_exception_handler
return conda_exception_handler(_main, *args)
|
https://github.com/conda/conda/issues/4944
|
(root) [root@d4cb01a1b5b6 ~]# conda activate
Traceback (most recent call last):
File "/conda/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/conda/lib/python2.7/site-packages/conda/cli/main.py", line 161, in main
raise CommandNotFoundError(argv1, message)
TypeError: __init__() takes exactly 2 arguments (3 given)
|
TypeError
|
def __init__(self, command):
build_commands = {
"build",
"convert",
"develop",
"index",
"inspect",
"metapackage",
"render",
"skeleton",
}
needs_source = {"activate", "deactivate"}
if command in build_commands:
message = dals("""
You need to install conda-build in order to
use the 'conda %(command)s' command.
""")
elif command in needs_source and not on_win:
message = dals("""
'%(command)s is not a conda command.
Did you mean 'source %(command)s'?
""")
else:
message = "Conda could not find the command: '%(command)s'"
super(CommandNotFoundError, self).__init__(message, command=command)
|
def __init__(self, command):
message = "Conda could not find the command: '%(command)s'"
super(CommandNotFoundError, self).__init__(message, command=command)
|
https://github.com/conda/conda/issues/4944
|
(root) [root@d4cb01a1b5b6 ~]# conda activate
Traceback (most recent call last):
File "/conda/bin/conda", line 6, in <module>
sys.exit(conda.cli.main())
File "/conda/lib/python2.7/site-packages/conda/cli/main.py", line 161, in main
raise CommandNotFoundError(argv1, message)
TypeError: __init__() takes exactly 2 arguments (3 given)
|
TypeError
|
def read_mod_and_etag(path):
with open(path, "rb") as f:
try:
with closing(mmap(f.fileno(), 0, access=ACCESS_READ)) as m:
match_objects = take(3, re.finditer(REPODATA_HEADER_RE, m))
result = dict(map(ensure_unicode, mo.groups()) for mo in match_objects)
return result
except (BufferError, ValueError):
# BufferError: cannot close exported pointers exist
# https://github.com/conda/conda/issues/4592
# ValueError: cannot mmap an empty file
return {}
|
def read_mod_and_etag(path):
with open(path, "rb") as f:
try:
with closing(mmap(f.fileno(), 0, access=ACCESS_READ)) as m:
match_objects = take(3, re.finditer(REPODATA_HEADER_RE, m))
result = dict(map(ensure_unicode, mo.groups()) for mo in match_objects)
return result
except ValueError:
# ValueError: cannot mmap an empty file
return {}
|
https://github.com/conda/conda/issues/4592
|
PS C:\> conda update conda
Fetching package metadata ...An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.3.7
conda is private : False
conda-env version : 4.3.7
conda-build version : 1.21.6
python version : 3.4.0.final.0
requests version : 2.12.4
root environment : C:\Anaconda3 (writable)
default environment : C:\Anaconda3
envs directories : C:\Anaconda3\envs
package cache : C:\Anaconda3\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/win-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch
config file : None
offline mode : False
user-agent : conda/4.3.7 requests/2.12.4 CPython/3.4.0 Windows/7 Windows/6.1.7601
`$ C:\Anaconda3\Scripts\conda-script.py update conda`
Traceback (most recent call last):
File "C:\Anaconda3\lib\site-packages\conda\exceptions.py", line 617, in conda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Anaconda3\lib\site-packages\conda\cli\main.py", line 137, in _main
exit_code = args.func(args, p)
File "C:\Anaconda3\lib\site-packages\conda\cli\main_update.py", line 65, in execute
install(args, parser, 'update')
File "C:\Anaconda3\lib\site-packages\conda\cli\install.py", line 210, in install
unknown=index_args['unknown'], prefix=prefix)
File "C:\Anaconda3\lib\site-packages\conda\core\index.py", line 120, in get_index
index = fetch_index(channel_priority_map, use_cache=use_cache)
File "C:\Anaconda3\lib\site-packages\conda\core\index.py", line 445, in fetch_index
repodatas = _collect_repodatas(use_cache, urls)
File "C:\Anaconda3\lib\site-packages\conda\core\index.py", line 433, in _collect_repodatas
repodatas = _collect_repodatas_serial(use_cache, urls)
File "C:\Anaconda3\lib\site-packages\conda\core\index.py", line 401, in _collect_repodatas_serial
for url in urls]
File "C:\Anaconda3\lib\site-packages\conda\core\index.py", line 401, in <listcomp>
for url in urls]
File "C:\Anaconda3\lib\site-packages\conda\core\index.py", line 141, in func
res = f(*args, **kwargs)
File "C:\Anaconda3\lib\site-packages\conda\core\index.py", line 364, in fetch_repodata
mod_etag_headers = read_mod_and_etag(cache_path)
File "C:\Anaconda3\lib\site-packages\conda\core\index.py", line 153, in read_mod_and_etag
return result
File "C:\Anaconda3\lib\contextlib.py", line 152, in __exit__
self.thing.close()
BufferError: cannot close exported pointers exist
PS C:\>
|
BufferError
|
def execute(self):
# I hate inline imports, but I guess it's ok since we're importing from the conda.core
# The alternative is passing the the classes to ExtractPackageAction __init__
from .package_cache import PackageCache, PackageCacheEntry
log.trace("extracting %s => %s", self.source_full_path, self.target_full_path)
if lexists(self.hold_path):
rm_rf(self.hold_path)
if lexists(self.target_full_path):
try:
backoff_rename(self.target_full_path, self.hold_path)
except (IOError, OSError) as e:
if e.errno == EXDEV:
# OSError(18, 'Invalid cross-device link')
# https://github.com/docker/docker/issues/25409
# ignore, but we won't be able to roll back
log.debug(
"Invalid cross-device link on rename %s => %s",
self.target_full_path,
self.hold_path,
)
rm_rf(self.target_full_path)
else:
raise
extract_tarball(self.source_full_path, self.target_full_path)
target_package_cache = PackageCache(self.target_pkgs_dir)
recorded_url = target_package_cache.urls_data.get_url(self.source_full_path)
dist = (
Dist(recorded_url) if recorded_url else Dist(path_to_url(self.source_full_path))
)
package_cache_entry = PackageCacheEntry.make_legacy(self.target_pkgs_dir, dist)
target_package_cache[package_cache_entry.dist] = package_cache_entry
|
def execute(self):
# I hate inline imports, but I guess it's ok since we're importing from the conda.core
# The alternative is passing the the classes to ExtractPackageAction __init__
from .package_cache import PackageCache, PackageCacheEntry
log.trace("extracting %s => %s", self.source_full_path, self.target_full_path)
if lexists(self.hold_path):
rm_rf(self.hold_path)
if lexists(self.target_full_path):
backoff_rename(self.target_full_path, self.hold_path)
extract_tarball(self.source_full_path, self.target_full_path)
target_package_cache = PackageCache(self.target_pkgs_dir)
recorded_url = target_package_cache.urls_data.get_url(self.source_full_path)
dist = (
Dist(recorded_url) if recorded_url else Dist(path_to_url(self.source_full_path))
)
package_cache_entry = PackageCacheEntry.make_legacy(self.target_pkgs_dir, dist)
target_package_cache[package_cache_entry.dist] = package_cache_entry
|
https://github.com/conda/conda/issues/4309
|
Traceback (most recent call last):
File "/root/miniconda3/lib/python3.5/site-packages/conda/exceptions.py", line 617, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/root/miniconda3/lib/python3.5/site-packages/conda_env/cli/main_create.py", line 112, in execute
installer.install(prefix, pkg_specs, args, env)
File "/root/miniconda3/lib/python3.5/site-packages/conda_env/installers/conda.py", line 37, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/root/miniconda3/lib/python3.5/site-packages/conda/plan.py", line 837, in execute_actions
execute_instructions(plan, index, verbose)
File "/root/miniconda3/lib/python3.5/site-packages/conda/instructions.py", line 258, in execute_instructions
cmd(state, arg)
File "/root/miniconda3/lib/python3.5/site-packages/conda/instructions.py", line 111, in PROGRESSIVEFETCHEXTRACT_CMD
progressive_fetch_extract.execute()
File "/root/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 467, in execute
self._execute_action(action)
File "/root/miniconda3/lib/python3.5/site-packages/conda/core/package_cache.py", line 489, in _execute_action
raise CondaMultiError(exceptions)
conda.CondaMultiError: OSError(18, 'Invalid cross-device link')
OSError(18, 'Invalid cross-device link')
OSError(18, 'Invalid cross-device link')
|
conda.CondaMultiError
|
def box(self, instance, val):
if isinstance(val, string_types):
val = val.replace("-", "").replace("_", "").lower()
if val == "hard":
val = LinkType.hardlink
elif val == "soft":
val = LinkType.softlink
return super(LinkTypeField, self).box(instance, val)
|
def box(self, instance, val):
if isinstance(val, string_types):
val = val.replace("-", "").replace("_", "").lower()
return super(LinkTypeField, self).box(instance, val)
|
https://github.com/conda/conda/issues/4398
|
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : osx-64
conda version : 4.3.6
conda is private : False
conda-env version : 4.3.6
conda-build version : 1.21.5
python version : 2.7.13.final.0
requests version : 2.12.4
root environment : /Users/mike/anaconda (writable)
default environment : /Users/mike/anaconda
envs directories : /Users/mike/anaconda/envs
package cache : /Users/mike/anaconda/pkgs
channel URLs : https://conda.anaconda.org/hydrocomputing/osx-64
https://conda.anaconda.org/hydrocomputing/noarch
https://repo.continuum.io/pkgs/free/osx-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/osx-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/osx-64
https://repo.continuum.io/pkgs/pro/noarch
https://conda.anaconda.org/conda-forge/osx-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/Esri/osx-64
https://conda.anaconda.org/Esri/noarch
config file : /Users/mike/.condarc
offline mode : False
user-agent : conda/4.3.6 requests/2.12.4 CPython/2.7.13 Darwin/15.6.0 OSX/10.11.6
UID:GID : 501:20
`$ /Users/mike/anaconda/bin/conda install numpy`
Traceback (most recent call last):
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 617, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 137, in _main
exit_code = args.func(args, p)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 136, in install
linked_dists = install_linked(prefix)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/core/linked_data.py", line 121, in linked
return set(linked_data(prefix, ignore_channels=ignore_channels).keys())
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/core/linked_data.py", line 113, in linked_data
load_linked_data(prefix, dist_name, ignore_channels=ignore_channels)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/core/linked_data.py", line 66, in load_linked_data
linked_data_[prefix][dist] = rec = IndexRecord(**rec)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 702, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 719, in __init__
setattr(self, key, kwargs[key])
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 831, in __setattr__
super(ImmutableEntity, self).__setattr__(attribute, value)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 424, in __set__
instance.__dict__[self.name] = self.validate(instance, self.box(instance, val))
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 658, in box
return val if isinstance(val, self._type) else self._type(**val)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 702, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 719, in __init__
setattr(self, key, kwargs[key])
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 424, in __set__
instance.__dict__[self.name] = self.validate(instance, self.box(instance, val))
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/models/index_record.py", line 15, in box
return super(LinkTypeField, self).box(instance, val)
File "/Users/mike/anaconda/lib/python2.7/site-packages/conda/_vendor/auxlib/entity.py", line 557, in box
raise ValidationError(val, msg=e1)
ValidationError: hard is not a valid LinkType
|
ValidationError
|
def remove_actions(prefix, specs, index, force=False, pinned=True):
r = Resolve(index)
linked = linked_data(prefix)
linked_dists = [d for d in linked.keys()]
if force:
mss = list(map(MatchSpec, specs))
nlinked = {
r.package_name(dist): dist
for dist in linked_dists
if not any(r.match(ms, dist) for ms in mss)
}
else:
add_defaults_to_specs(r, linked_dists, specs, update=True)
nlinked = {
r.package_name(dist): dist
for dist in (Dist(fn) for fn in r.remove(specs, r.installed))
}
if pinned:
pinned_specs = get_pinned_specs(prefix)
log.debug("Pinned specs=%s" % pinned_specs)
linked = {r.package_name(dist): dist for dist in linked_dists}
actions = ensure_linked_actions(r.dependency_sort(nlinked), prefix)
for old_dist in reversed(r.dependency_sort(linked)):
# dist = old_fn + '.tar.bz2'
name = r.package_name(old_dist)
if old_dist == nlinked.get(name):
continue
if pinned and any(r.match(ms, old_dist) for ms in pinned_specs):
msg = "Cannot remove %s because it is pinned. Use --no-pin to override."
raise CondaRuntimeError(msg % old_dist.to_filename())
if (
context.conda_in_root
and name == "conda"
and name not in nlinked
and not context.force
):
if any(s.split(" ", 1)[0] == "conda" for s in specs):
raise RemoveError("'conda' cannot be removed from the root environment")
else:
raise RemoveError(
"Error: this 'remove' command cannot be executed because it\n"
"would require removing 'conda' dependencies"
)
add_unlink(actions, old_dist)
return actions
|
def remove_actions(prefix, specs, index, force=False, pinned=True):
r = Resolve(index)
linked = linked_data(prefix)
linked_dists = [d for d in linked.keys()]
if force:
mss = list(map(MatchSpec, specs))
nlinked = {
r.package_name(dist): dist
for dist in linked_dists
if not any(r.match(ms, dist) for ms in mss)
}
else:
add_defaults_to_specs(r, linked_dists, specs, update=True)
nlinked = {
r.package_name(dist): dist
for dist in (Dist(fn) for fn in r.remove(specs, r.installed))
}
if pinned:
pinned_specs = get_pinned_specs(prefix)
log.debug("Pinned specs=%s" % pinned_specs)
linked = {r.package_name(dist): dist for dist in linked_dists}
actions = ensure_linked_actions(r.dependency_sort(nlinked), prefix)
for old_dist in reversed(r.dependency_sort(linked)):
# dist = old_fn + '.tar.bz2'
name = r.package_name(old_dist)
if old_dist == nlinked.get(name):
continue
if pinned and any(r.match(ms, old_dist.to_filename()) for ms in pinned_specs):
msg = "Cannot remove %s because it is pinned. Use --no-pin to override."
raise CondaRuntimeError(msg % old_dist.to_filename())
if (
context.conda_in_root
and name == "conda"
and name not in nlinked
and not context.force
):
if any(s.split(" ", 1)[0] == "conda" for s in specs):
raise RemoveError("'conda' cannot be removed from the root environment")
else:
raise RemoveError(
"Error: this 'remove' command cannot be executed because it\n"
"would require removing 'conda' dependencies"
)
add_unlink(actions, old_dist)
return actions
|
https://github.com/conda/conda/issues/4324
|
Current conda install:
platform : linux-64
conda version : 4.3.4
conda is private : False
conda-env version : 4.3.4
conda-build version : not installed
python version : 2.7.13.final.0
requests version : 2.12.4
root environment : /home/travis/miniconda (writable)
default environment : /home/travis/miniconda/envs/test
envs directories : /home/travis/miniconda/envs
package cache : /home/travis/miniconda/pkgs
channel URLs : https://conda.anaconda.org/astropy-ci-extras astropy/linux-64
https://conda.anaconda.org/astropy-ci-extras astropy/noarch
https://conda.anaconda.org/astropy/linux-64
https://conda.anaconda.org/astropy/noarch
https://conda.anaconda.org/astropy-ci-extras/linux-64
https://conda.anaconda.org/astropy-ci-extras/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
config file : /home/travis/.condarc
offline mode : False
user-agent : conda/4.3.4 requests/2.12.4 CPython/2.7.13 Linux/4.8.12-040812-generic debian/wheezy/sid glibc/2.15
UID:GID : 1000:1000
`$ /home/travis/miniconda/envs/test/bin/conda remove astropy --force`
Traceback (most recent call last):
File "/home/travis/miniconda/lib/python2.7/site-packages/conda/exceptions.py", line 617, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/travis/miniconda/lib/python2.7/site-packages/conda/cli/main.py", line 158, in _main
exit_code = args.func(args, p)
File "/home/travis/miniconda/lib/python2.7/site-packages/conda/cli/main_remove.py", line 164, in execute
pinned=args.pinned))
File "/home/travis/miniconda/lib/python2.7/site-packages/conda/plan.py", line 776, in remove_actions
if pinned and any(r.match(ms, old_dist.to_filename()) for ms in pinned_specs):
File "/home/travis/miniconda/lib/python2.7/site-packages/conda/plan.py", line 776, in <genexpr>
if pinned and any(r.match(ms, old_dist.to_filename()) for ms in pinned_specs):
File "/home/travis/miniconda/lib/python2.7/site-packages/conda/resolve.py", line 474, in match
rec = self.index[fkey]
KeyError: u'astropy-1.0.3-np19py33_0.tar.bz2'
|
KeyError
|
def is_url(url):
if not url:
return False
try:
p = urlparse(url)
return p.netloc is not None or p.scheme == "file"
except LocationParseError:
log.debug("Could not parse url ({0}).".format(url))
return False
|
def is_url(url):
try:
p = urlparse(url)
return p.netloc is not None or p.scheme == "file"
except LocationParseError:
log.debug("Could not parse url ({0}).".format(url))
return False
|
https://github.com/conda/conda/issues/3910
|
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.2.12
conda is private : False
conda-env version : 4.2.12
conda-build version : 2.0.7
python version : 3.5.2.final.0
requests version : 2.10.0
root environment : C:\Miniconda3 (writable)
default environment : C:\Miniconda3\envs\test_conda
envs directories : C:\Miniconda3\envs
package cache : C:\Miniconda3\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/pro/win-64
https://repo.continuum.io/pkgs/pro/noarch
https://repo.continuum.io/pkgs/msys2/win-64
https://repo.continuum.io/pkgs/msys2/noarch
config file : None
offline mode : False
`$ C:\Miniconda3\Scripts\conda-script.py install bzip2-1.0.6-vc14_3.tar.bz2 --dry-run`
Traceback (most recent call last):
File "C:\Miniconda3\lib\site-packages\conda\exceptions.py", line 479, in conda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Miniconda3\lib\site-packages\conda\cli\main.py", line 145, in _main
exit_code = args.func(args, p)
File "C:\Miniconda3\lib\site-packages\conda\cli\main_install.py", line 80, in execute
install(args, parser, 'install')
File "C:\Miniconda3\lib\site-packages\conda\cli\install.py", line 209, in install
explicit(args.packages, prefix, verbose=not context.quiet)
File "C:\Miniconda3\lib\site-packages\conda\misc.py", line 66, in explicit
if not is_url(url_p):
File "C:\Miniconda3\lib\site-packages\conda\common\url.py", line 72, in is_url
p = urlparse(url)
File "C:\Miniconda3\lib\site-packages\conda\_vendor\auxlib\decorators.py", line 56, in _memoized_func
result = func(*args, **kwargs)
File "C:\Miniconda3\lib\site-packages\conda\common\url.py", line 55, in urlparse
if on_win and url.startswith('file:'):
AttributeError: 'NoneType' object has no attribute 'startswith'
|
AttributeError
|
def _read_channel_configuration(scheme, host, port, path):
# return location, name, scheme, auth, token
path = path and path.rstrip("/")
test_url = Url(host=host, port=port, path=path).url
# Step 1. No path given; channel name is None
if not path:
return (
Url(host=host, port=port).url.rstrip("/"),
None,
scheme or None,
None,
None,
)
# Step 2. migrated_custom_channels matches
for name, location in sorted(
context.migrated_custom_channels.items(), reverse=True, key=lambda x: len(x[0])
):
location, _scheme, _auth, _token = split_scheme_auth_token(location)
if tokenized_conda_url_startswith(test_url, join_url(location, name)):
# translate location to new location, with new credentials
subname = test_url.replace(join_url(location, name), "", 1).strip("/")
channel_name = join_url(name, subname)
channel = _get_channel_for_name(channel_name)
return (
channel.location,
channel_name,
channel.scheme,
channel.auth,
channel.token,
)
# Step 3. migrated_channel_aliases matches
for migrated_alias in context.migrated_channel_aliases:
if test_url.startswith(migrated_alias.location):
name = test_url.replace(migrated_alias.location, "", 1).strip("/")
ca = context.channel_alias
return ca.location, name, ca.scheme, ca.auth, ca.token
# Step 4. custom_channels matches
for name, channel in sorted(
context.custom_channels.items(), reverse=True, key=lambda x: len(x[0])
):
that_test_url = join_url(channel.location, channel.name)
if test_url.startswith(that_test_url):
subname = test_url.replace(that_test_url, "", 1).strip("/")
return (
channel.location,
join_url(channel.name, subname),
scheme,
channel.auth,
channel.token,
)
# Step 5. channel_alias match
ca = context.channel_alias
if ca.location and test_url.startswith(ca.location):
name = test_url.replace(ca.location, "", 1).strip("/") or None
return ca.location, name, scheme, ca.auth, ca.token
# Step 6. not-otherwise-specified file://-type urls
if host is None:
# this should probably only happen with a file:// type url
assert port is None
location, name = test_url.rsplit("/", 1)
if not location:
location = "/"
_scheme, _auth, _token = "file", None, None
return location, name, _scheme, _auth, _token
# Step 7. fall through to host:port as channel_location and path as channel_name
return (
Url(host=host, port=port).url.rstrip("/"),
path.strip("/") or None,
scheme or None,
None,
None,
)
|
def _read_channel_configuration(scheme, host, port, path):
# return location, name, scheme, auth, token
test_url = Url(host=host, port=port, path=path).url.rstrip("/")
# Step 1. migrated_custom_channels matches
for name, location in sorted(
context.migrated_custom_channels.items(), reverse=True, key=lambda x: len(x[0])
):
location, _scheme, _auth, _token = split_scheme_auth_token(location)
if tokenized_conda_url_startswith(test_url, join_url(location, name)):
# translate location to new location, with new credentials
subname = test_url.replace(join_url(location, name), "", 1).strip("/")
channel_name = join_url(name, subname)
channel = _get_channel_for_name(channel_name)
return (
channel.location,
channel_name,
channel.scheme,
channel.auth,
channel.token,
)
# Step 2. migrated_channel_aliases matches
for migrated_alias in context.migrated_channel_aliases:
if test_url.startswith(migrated_alias.location):
name = test_url.replace(migrated_alias.location, "", 1).strip("/")
ca = context.channel_alias
return ca.location, name, ca.scheme, ca.auth, ca.token
# Step 3. custom_channels matches
for name, channel in sorted(
context.custom_channels.items(), reverse=True, key=lambda x: len(x[0])
):
that_test_url = join_url(channel.location, channel.name)
if test_url.startswith(that_test_url):
subname = test_url.replace(that_test_url, "", 1).strip("/")
return (
channel.location,
join_url(channel.name, subname),
scheme,
channel.auth,
channel.token,
)
# Step 4. channel_alias match
ca = context.channel_alias
if ca.location and test_url.startswith(ca.location):
name = test_url.replace(ca.location, "", 1).strip("/") or None
return ca.location, name, scheme, ca.auth, ca.token
# Step 5. not-otherwise-specified file://-type urls
if host is None:
# this should probably only happen with a file:// type url
assert port is None
location, name = test_url.rsplit("/", 1)
if not location:
location = "/"
_scheme, _auth, _token = "file", None, None
return location, name, _scheme, _auth, _token
# Step 6. fall through to host:port as channel_location and path as channel_name
return (
Url(host=host, port=port).url.rstrip("/"),
path.strip("/") or None,
scheme or None,
None,
None,
)
|
https://github.com/conda/conda/issues/3717
|
Traceback (most recent call last):
File "C:\Miniconda3\lib\site-packages\conda\exceptions.py", line 479, in c
onda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Miniconda3\lib\site-packages\conda\cli\main.py", line 145, in _ma
in
exit_code = args.func(args, p)
File "C:\Miniconda3\lib\site-packages\conda\cli\main_update.py", line 65,
in execute
install(args, parser, 'update')
File "C:\Miniconda3\lib\site-packages\conda\cli\install.py", line 308, in
install
update_deps=context.update_dependencies)
File "C:\Miniconda3\lib\site-packages\conda\plan.py", line 526, in install
_actions
force=force, always_copy=always_copy)
File "C:\Miniconda3\lib\site-packages\conda\plan.py", line 308, in ensure_
linked_actions
fetched_in = is_fetched(dist)
File "C:\Miniconda3\lib\site-packages\conda\install.py", line 727, in is_f
etched
for fn in package_cache().get(dist, {}).get('files', ()):
File "C:\Miniconda3\lib\site-packages\conda\install.py", line 675, in pack
age_cache
add_cached_package(pdir, url)
File "C:\Miniconda3\lib\site-packages\conda\install.py", line 633, in add_
cached_package
schannel = Channel(url).canonical_name
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 161,
in __call__
c = Channel.from_value(value)
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 211,
in from_value
return Channel.from_url(value)
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 196,
in from_url
return parse_conda_channel_url(url)
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 132,
in parse_conda_channel_url
configured_token) = _read_channel_configuration(scheme, host, port, path
)
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 122,
in _read_channel_configuration
return (Url(host=host, port=port).url.rstrip('/'), path.strip('/') or No
ne,
AttributeError: 'NoneType' object has no attribute 'strip'
|
AttributeError
|
def canonical_name(self):
for multiname, channels in iteritems(context.custom_multichannels):
for channel in channels:
if self.name == channel.name:
return multiname
for that_name in context.custom_channels:
if self.name and tokenized_startswith(
self.name.split("/"), that_name.split("/")
):
return self.name
if any(
c.location == self.location
for c in concatv((context.channel_alias,), context.migrated_channel_aliases)
):
return self.name
# fall back to the equivalent of self.base_url
# re-defining here because base_url for MultiChannel is None
return "%s://%s" % (self.scheme, join_url(self.location, self.name))
|
def canonical_name(self):
for multiname, channels in iteritems(context.custom_multichannels):
for channel in channels:
if self.name == channel.name:
return multiname
for that_name in context.custom_channels:
if tokenized_startswith(self.name.split("/"), that_name.split("/")):
return self.name
if any(
c.location == self.location
for c in concatv((context.channel_alias,), context.migrated_channel_aliases)
):
return self.name
# fall back to the equivalent of self.base_url
# re-defining here because base_url for MultiChannel is None
return "%s://%s/%s" % (self.scheme, self.location, self.name)
|
https://github.com/conda/conda/issues/3717
|
Traceback (most recent call last):
File "C:\Miniconda3\lib\site-packages\conda\exceptions.py", line 479, in c
onda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Miniconda3\lib\site-packages\conda\cli\main.py", line 145, in _ma
in
exit_code = args.func(args, p)
File "C:\Miniconda3\lib\site-packages\conda\cli\main_update.py", line 65,
in execute
install(args, parser, 'update')
File "C:\Miniconda3\lib\site-packages\conda\cli\install.py", line 308, in
install
update_deps=context.update_dependencies)
File "C:\Miniconda3\lib\site-packages\conda\plan.py", line 526, in install
_actions
force=force, always_copy=always_copy)
File "C:\Miniconda3\lib\site-packages\conda\plan.py", line 308, in ensure_
linked_actions
fetched_in = is_fetched(dist)
File "C:\Miniconda3\lib\site-packages\conda\install.py", line 727, in is_f
etched
for fn in package_cache().get(dist, {}).get('files', ()):
File "C:\Miniconda3\lib\site-packages\conda\install.py", line 675, in pack
age_cache
add_cached_package(pdir, url)
File "C:\Miniconda3\lib\site-packages\conda\install.py", line 633, in add_
cached_package
schannel = Channel(url).canonical_name
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 161,
in __call__
c = Channel.from_value(value)
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 211,
in from_value
return Channel.from_url(value)
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 196,
in from_url
return parse_conda_channel_url(url)
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 132,
in parse_conda_channel_url
configured_token) = _read_channel_configuration(scheme, host, port, path
)
File "C:\Miniconda3\lib\site-packages\conda\models\channel.py", line 122,
in _read_channel_configuration
return (Url(host=host, port=port).url.rstrip('/'), path.strip('/') or No
ne,
AttributeError: 'NoneType' object has no attribute 'strip'
|
AttributeError
|
def replace_long_shebang(mode, data):
if mode == FileMode.text:
shebang_match = SHEBANG_REGEX.match(data)
if shebang_match:
whole_shebang, executable, options = shebang_match.groups()
if len(whole_shebang) > 127:
executable_name = executable.decode(UTF8).split("/")[-1]
new_shebang = "#!/usr/bin/env %s%s" % (
executable_name,
options.decode(UTF8),
)
data = data.replace(whole_shebang, new_shebang.encode(UTF8))
else:
# TODO: binary shebangs exist; figure this out in the future if text works well
log.debug(
"TODO: binary shebangs exist; figure this out in the future if text works well"
)
return data
|
def replace_long_shebang(mode, data):
if mode is FileMode.text:
shebang_match = SHEBANG_REGEX.match(data)
if shebang_match:
whole_shebang, executable, options = shebang_match.groups()
if len(whole_shebang) > 127:
executable_name = executable.decode(UTF8).split("/")[-1]
new_shebang = "#!/usr/bin/env %s%s" % (
executable_name,
options.decode(UTF8),
)
data = data.replace(whole_shebang, new_shebang.encode(UTF8))
else:
# TODO: binary shebangs exist; figure this out in the future if text works well
log.debug(
"TODO: binary shebangs exist; figure this out in the future if text works well"
)
return data
|
https://github.com/conda/conda/issues/3646
|
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/exceptions.py", line 472, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/cli/main.py", line 144, in _main
exit_code = args.func(args, p)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/cli/install.py", line 420, in install
raise CondaRuntimeError('RuntimeError: %s' % e)
CondaRuntimeError: Runtime error: RuntimeError: Invalid mode: <conda.install.FileMode object at 0x10846b110>
|
CondaRuntimeError
|
def replace_prefix(mode, data, placeholder, new_prefix):
if mode == FileMode.text:
data = data.replace(placeholder.encode(UTF8), new_prefix.encode(UTF8))
elif mode == FileMode.binary:
data = binary_replace(data, placeholder.encode(UTF8), new_prefix.encode(UTF8))
else:
raise RuntimeError("Invalid mode: %r" % mode)
return data
|
def replace_prefix(mode, data, placeholder, new_prefix):
if mode is FileMode.text:
data = data.replace(placeholder.encode(UTF8), new_prefix.encode(UTF8))
elif mode == FileMode.binary:
data = binary_replace(data, placeholder.encode(UTF8), new_prefix.encode(UTF8))
else:
raise RuntimeError("Invalid mode: %r" % mode)
return data
|
https://github.com/conda/conda/issues/3646
|
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/exceptions.py", line 472, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/cli/main.py", line 144, in _main
exit_code = args.func(args, p)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/cli/install.py", line 420, in install
raise CondaRuntimeError('RuntimeError: %s' % e)
CondaRuntimeError: Runtime error: RuntimeError: Invalid mode: <conda.install.FileMode object at 0x10846b110>
|
CondaRuntimeError
|
def update_prefix(path, new_prefix, placeholder=PREFIX_PLACEHOLDER, mode=FileMode.text):
if on_win and mode == FileMode.text:
# force all prefix replacements to forward slashes to simplify need to escape backslashes
# replace with unix-style path separators
new_prefix = new_prefix.replace("\\", "/")
path = os.path.realpath(path)
with open(path, "rb") as fi:
original_data = data = fi.read()
data = replace_prefix(mode, data, placeholder, new_prefix)
if not on_win:
data = replace_long_shebang(mode, data)
if data == original_data:
return
st = os.lstat(path)
with exp_backoff_fn(open, path, "wb") as fo:
fo.write(data)
os.chmod(path, stat.S_IMODE(st.st_mode))
|
def update_prefix(path, new_prefix, placeholder=PREFIX_PLACEHOLDER, mode=FileMode.text):
if on_win and mode is FileMode.text:
# force all prefix replacements to forward slashes to simplify need to escape backslashes
# replace with unix-style path separators
new_prefix = new_prefix.replace("\\", "/")
path = os.path.realpath(path)
with open(path, "rb") as fi:
original_data = data = fi.read()
data = replace_prefix(mode, data, placeholder, new_prefix)
if not on_win:
data = replace_long_shebang(mode, data)
if data == original_data:
return
st = os.lstat(path)
with exp_backoff_fn(open, path, "wb") as fo:
fo.write(data)
os.chmod(path, stat.S_IMODE(st.st_mode))
|
https://github.com/conda/conda/issues/3646
|
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/exceptions.py", line 472, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/cli/main.py", line 144, in _main
exit_code = args.func(args, p)
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/conda/cli/install.py", line 420, in install
raise CondaRuntimeError('RuntimeError: %s' % e)
CondaRuntimeError: Runtime error: RuntimeError: Invalid mode: <conda.install.FileMode object at 0x10846b110>
|
CondaRuntimeError
|
def from_value(value):
if value is None:
return Channel(name="<unknown>")
if hasattr(value, "decode"):
value = value.decode(UTF8)
if has_scheme(value):
if value.startswith("file:") and on_win:
value = value.replace("\\", "/")
return Channel.from_url(value)
elif value.startswith(("./", "..", "~", "/")) or is_windows_path(value):
return Channel.from_url(path_to_url(value))
elif value.endswith(".tar.bz2"):
if value.startswith("file:") and on_win:
value = value.replace("\\", "/")
return Channel.from_url(value)
else:
# at this point assume we don't have a bare (non-scheme) url
# e.g. this would be bad: repo.continuum.io/pkgs/free
if value in context.custom_multichannels:
return MultiChannel(value, context.custom_multichannels[value])
else:
return Channel.from_channel_name(value)
|
def from_value(value):
if value is None:
return Channel(name="<unknown>")
elif has_scheme(value):
if value.startswith("file:") and on_win:
value = value.replace("\\", "/")
return Channel.from_url(value)
elif value.startswith(("./", "..", "~", "/")) or is_windows_path(value):
return Channel.from_url(path_to_url(value))
elif value.endswith(".tar.bz2"):
if value.startswith("file:") and on_win:
value = value.replace("\\", "/")
return Channel.from_url(value)
else:
# at this point assume we don't have a bare (non-scheme) url
# e.g. this would be bad: repo.continuum.io/pkgs/free
if value in context.custom_multichannels:
return MultiChannel(value, context.custom_multichannels[value])
else:
return Channel.from_channel_name(value)
|
https://github.com/conda/conda/issues/3655
|
Traceback (most recent call last):
File "/usr1/eclark/anaconda3/lib/python3.4/site-packages/conda/exceptions.py", line 473, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/usr1/eclark/anaconda3/lib/python3.4/site-packages/conda/cli/main.py", line 144, in _main
exit_code = args.func(args, p)
File "/usr1/eclark/anaconda3/lib/python3.4/site-packages/conda/cli/main_search.py", line 126, in execute
execute_search(args, parser)
File "/usr1/eclark/anaconda3/lib/python3.4/site-packages/conda/cli/main_search.py", line 268, in execute_search
Channel(pkg.channel).canonical_name,
File "/usr1/eclark/anaconda3/lib/python3.4/site-packages/conda/models/channel.py", line 44, in __call__
elif value.endswith('.tar.bz2'):
TypeError: endswith first arg must be bytes or a tuple of bytes, not str
|
TypeError
|
def _main():
from ..base.context import context
from ..gateways.logging import set_all_logger_level, set_verbosity
from ..exceptions import CommandNotFoundError
from ..utils import on_win
log.debug("conda.cli.main called with %s", sys.argv)
if len(sys.argv) > 1:
argv1 = sys.argv[1]
if argv1 in ("..activate", "..deactivate", "..checkenv", "..changeps1"):
import conda.cli.activate as activate
activate.main()
return
if argv1 in ("activate", "deactivate"):
message = "'%s' is not a conda command.\n" % argv1
if not on_win:
message += ' Did you mean "source %s" ?\n' % " ".join(sys.argv[1:])
raise CommandNotFoundError(argv1, message)
if len(sys.argv) == 1:
sys.argv.append("-h")
p, sub_parsers = generate_parser()
main_modules = [
"info",
"help",
"list",
"search",
"create",
"install",
"update",
"remove",
"config",
"clean",
"package",
]
modules = ["conda.cli.main_" + suffix for suffix in main_modules]
for module in modules:
imported = importlib.import_module(module)
imported.configure_parser(sub_parsers)
if "update" in module:
imported.configure_parser(sub_parsers, name="upgrade")
if "remove" in module:
imported.configure_parser(sub_parsers, name="uninstall")
from conda.cli.find_commands import find_commands
def completer(prefix, **kwargs):
return [
i
for i in list(sub_parsers.choices) + find_commands()
if i.startswith(prefix)
]
sub_parsers.completer = completer
args = p.parse_args()
context._add_argparse_args(args)
if getattr(args, "json", False):
# # Silence logging info to avoid interfering with JSON output
# for logger in Logger.manager.loggerDict:
# if logger not in ('fetch', 'progress'):
# getLogger(logger).setLevel(CRITICAL + 1)
for logger in ("print", "dotupdate", "stdoutlog", "stderrlog"):
getLogger(logger).setLevel(CRITICAL + 1)
if context.debug:
set_all_logger_level(DEBUG)
elif context.verbosity:
set_verbosity(context.verbosity)
log.debug("verbosity set to %s", context.verbosity)
exit_code = args.func(args, p)
if isinstance(exit_code, int):
return exit_code
|
def _main():
log.debug("conda.cli.main called with %s", sys.argv)
if len(sys.argv) > 1:
argv1 = sys.argv[1]
if argv1 in ("..activate", "..deactivate", "..checkenv", "..changeps1"):
import conda.cli.activate as activate
activate.main()
return
if argv1 in ("activate", "deactivate"):
message = "'%s' is not a conda command.\n" % argv1
if not on_win:
message += ' Did you mean "source %s" ?\n' % " ".join(sys.argv[1:])
raise CommandNotFoundError(argv1, message)
if len(sys.argv) == 1:
sys.argv.append("-h")
p, sub_parsers = generate_parser()
main_modules = [
"info",
"help",
"list",
"search",
"create",
"install",
"update",
"remove",
"config",
"clean",
"package",
]
modules = ["conda.cli.main_" + suffix for suffix in main_modules]
for module in modules:
imported = importlib.import_module(module)
imported.configure_parser(sub_parsers)
if "update" in module:
imported.configure_parser(sub_parsers, name="upgrade")
if "remove" in module:
imported.configure_parser(sub_parsers, name="uninstall")
from conda.cli.find_commands import find_commands
def completer(prefix, **kwargs):
return [
i
for i in list(sub_parsers.choices) + find_commands()
if i.startswith(prefix)
]
sub_parsers.completer = completer
args = p.parse_args()
context._add_argparse_args(args)
if getattr(args, "json", False):
# # Silence logging info to avoid interfering with JSON output
# for logger in Logger.manager.loggerDict:
# if logger not in ('fetch', 'progress'):
# getLogger(logger).setLevel(CRITICAL + 1)
for logger in ("print", "dotupdate", "stdoutlog", "stderrlog"):
getLogger(logger).setLevel(CRITICAL + 1)
if context.debug:
set_all_logger_level(DEBUG)
elif context.verbosity:
set_verbosity(context.verbosity)
log.debug("verbosity set to %s", context.verbosity)
exit_code = args.func(args, p)
if isinstance(exit_code, int):
return exit_code
|
https://github.com/conda/conda/issues/3590
|
Traceback (most recent call last):
File "/opt/anaconda/bin/conda", line 4, in <module>
import conda.cli
File "/opt/anaconda/lib/python2.7/site-packages/conda/cli/__init__.py", line 8, in <module>
from .main import main # NOQA
File "/opt/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 46, in <module>
from ..base.context import context
File "/opt/anaconda/lib/python2.7/site-packages/conda/base/context.py", line 252, in <module>
context = Context(SEARCH_PATH, conda, None)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 692, in __init__
self._add_search_path(search_path)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 699, in _add_search_path
return self._add_raw_data(load_file_configs(search_path))
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 371, in load_file_configs
raw_data = odict(kv for kv in chain.from_iterable(load_paths))
File "/opt/anaconda/lib/python2.7/collections.py", line 69, in __init__
self.__update(*args, **kwds)
File "/opt/anaconda/lib/python2.7/_abcoll.py", line 571, in update
for key, value in other:
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 371, in <genexpr>
raw_data = odict(kv for kv in chain.from_iterable(load_paths))
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 347, in _file_yaml_loader
yield fullpath, YamlRawParameter.make_raw_parameters_from_file(fullpath)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 338, in make_raw_parameters_from_file
ruamel_yaml = yaml_load(fh)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/yaml.py", line 26, in yaml_load
return yaml.load(string, Loader=yaml.RoundTripLoader, version="1.2")
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/main.py", line 75, in load
return loader.get_single_data()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 60, in get_single_data
node = self.get_single_node()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/composer.py", line 48, in get_single_node
self.get_event()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 136, in get_event
self.current_event = self.state()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 150, in parse_stream_start
token.move_comment(self.peek_token())
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 1543, in peek_token
self._gather_comments()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 1573, in _gather_comments
self.fetch_more_tokens()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 239, in fetch_more_tokens
return self.fetch_value()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 598, in fetch_value
self.get_mark())
ruamel_yaml.scanner.ScannerError: mapping values are not allowed here
in "/opt/anaconda/.condarc", line 4, column 8
|
ruamel_yaml.scanner.ScannerError
|
def main():
from ..exceptions import conda_exception_handler
return conda_exception_handler(_main)
|
def main():
return conda_exception_handler(_main)
|
https://github.com/conda/conda/issues/3590
|
Traceback (most recent call last):
File "/opt/anaconda/bin/conda", line 4, in <module>
import conda.cli
File "/opt/anaconda/lib/python2.7/site-packages/conda/cli/__init__.py", line 8, in <module>
from .main import main # NOQA
File "/opt/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 46, in <module>
from ..base.context import context
File "/opt/anaconda/lib/python2.7/site-packages/conda/base/context.py", line 252, in <module>
context = Context(SEARCH_PATH, conda, None)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 692, in __init__
self._add_search_path(search_path)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 699, in _add_search_path
return self._add_raw_data(load_file_configs(search_path))
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 371, in load_file_configs
raw_data = odict(kv for kv in chain.from_iterable(load_paths))
File "/opt/anaconda/lib/python2.7/collections.py", line 69, in __init__
self.__update(*args, **kwds)
File "/opt/anaconda/lib/python2.7/_abcoll.py", line 571, in update
for key, value in other:
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 371, in <genexpr>
raw_data = odict(kv for kv in chain.from_iterable(load_paths))
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 347, in _file_yaml_loader
yield fullpath, YamlRawParameter.make_raw_parameters_from_file(fullpath)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 338, in make_raw_parameters_from_file
ruamel_yaml = yaml_load(fh)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/yaml.py", line 26, in yaml_load
return yaml.load(string, Loader=yaml.RoundTripLoader, version="1.2")
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/main.py", line 75, in load
return loader.get_single_data()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 60, in get_single_data
node = self.get_single_node()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/composer.py", line 48, in get_single_node
self.get_event()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 136, in get_event
self.current_event = self.state()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 150, in parse_stream_start
token.move_comment(self.peek_token())
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 1543, in peek_token
self._gather_comments()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 1573, in _gather_comments
self.fetch_more_tokens()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 239, in fetch_more_tokens
return self.fetch_value()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 598, in fetch_value
self.get_mark())
ruamel_yaml.scanner.ScannerError: mapping values are not allowed here
in "/opt/anaconda/.condarc", line 4, column 8
|
ruamel_yaml.scanner.ScannerError
|
def make_raw_parameters_from_file(cls, filepath):
with open(filepath, "r") as fh:
try:
ruamel_yaml = yaml_load(fh)
except ScannerError as err:
mark = err.problem_mark
raise LoadError("Invalid YAML", filepath, mark.line, mark.column)
return cls.make_raw_parameters(filepath, ruamel_yaml) or EMPTY_MAP
|
def make_raw_parameters_from_file(cls, filepath):
with open(filepath, "r") as fh:
ruamel_yaml = yaml_load(fh)
return cls.make_raw_parameters(filepath, ruamel_yaml) or EMPTY_MAP
|
https://github.com/conda/conda/issues/3590
|
Traceback (most recent call last):
File "/opt/anaconda/bin/conda", line 4, in <module>
import conda.cli
File "/opt/anaconda/lib/python2.7/site-packages/conda/cli/__init__.py", line 8, in <module>
from .main import main # NOQA
File "/opt/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 46, in <module>
from ..base.context import context
File "/opt/anaconda/lib/python2.7/site-packages/conda/base/context.py", line 252, in <module>
context = Context(SEARCH_PATH, conda, None)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 692, in __init__
self._add_search_path(search_path)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 699, in _add_search_path
return self._add_raw_data(load_file_configs(search_path))
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 371, in load_file_configs
raw_data = odict(kv for kv in chain.from_iterable(load_paths))
File "/opt/anaconda/lib/python2.7/collections.py", line 69, in __init__
self.__update(*args, **kwds)
File "/opt/anaconda/lib/python2.7/_abcoll.py", line 571, in update
for key, value in other:
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 371, in <genexpr>
raw_data = odict(kv for kv in chain.from_iterable(load_paths))
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 347, in _file_yaml_loader
yield fullpath, YamlRawParameter.make_raw_parameters_from_file(fullpath)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/configuration.py", line 338, in make_raw_parameters_from_file
ruamel_yaml = yaml_load(fh)
File "/opt/anaconda/lib/python2.7/site-packages/conda/common/yaml.py", line 26, in yaml_load
return yaml.load(string, Loader=yaml.RoundTripLoader, version="1.2")
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/main.py", line 75, in load
return loader.get_single_data()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/constructor.py", line 60, in get_single_data
node = self.get_single_node()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/composer.py", line 48, in get_single_node
self.get_event()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 136, in get_event
self.current_event = self.state()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/parser.py", line 150, in parse_stream_start
token.move_comment(self.peek_token())
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 1543, in peek_token
self._gather_comments()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 1573, in _gather_comments
self.fetch_more_tokens()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 239, in fetch_more_tokens
return self.fetch_value()
File "/opt/anaconda/lib/python2.7/site-packages/ruamel_yaml/scanner.py", line 598, in fetch_value
self.get_mark())
ruamel_yaml.scanner.ScannerError: mapping values are not allowed here
in "/opt/anaconda/.condarc", line 4, column 8
|
ruamel_yaml.scanner.ScannerError
|
def collect_errors(self, instance, value, source="<<merged>>"):
errors = super(MapParameter, self).collect_errors(instance, value)
if isinstance(value, Mapping):
element_type = self._element_type
errors.extend(
InvalidElementTypeError(
self.name, val, source, type(val), element_type, key
)
for key, val in iteritems(value)
if not isinstance(val, element_type)
)
return errors
|
def collect_errors(self, instance, value, source="<<merged>>"):
errors = super(MapParameter, self).collect_errors(instance, value)
element_type = self._element_type
errors.extend(
InvalidElementTypeError(self.name, val, source, type(val), element_type, key)
for key, val in iteritems(value)
if not isinstance(val, element_type)
)
return errors
|
https://github.com/conda/conda/issues/3467
|
Traceback (most recent call last):
File "C:\Anaconda3\lib\site-packages\conda\exceptions.py", line 472, in conda_exception_handler
return_value = func(*args, **kwargs)
File "C:\Anaconda3\lib\site-packages\conda\cli\main.py", line 144, in _main
exit_code = args.func(args, p)
File "C:\Anaconda3\lib\site-packages\conda\cli\main_update.py", line 65, in execute
install(args, parser, 'update')
File "C:\Anaconda3\lib\site-packages\conda\cli\install.py", line 139, in install
context.validate_all()
File "C:\Anaconda3\lib\site-packages\conda\common\configuration.py", line 752, in validate_all
for source in self.raw_data))
File "C:\Anaconda3\lib\site-packages\conda\common\configuration.py", line 752, in <genexpr>
for source in self.raw_data))
File "C:\Anaconda3\lib\site-packages\conda\common\configuration.py", line 739, in check_source
collected_errors = parameter.collect_errors(self, typed_value, match.source)
File "C:\Anaconda3\lib\site-packages\conda\common\configuration.py", line 642, in collect_errors
for key, val in iteritems(value) if not isinstance(val, element_type))
File "C:\Anaconda3\lib\site-packages\conda\compat.py", line 148, in iteritems
return iter(getattr(d, _iteritems)())
AttributeError: 'str' object has no attribute 'items'
|
AttributeError
|
def check_prefix(prefix, json=False):
name = basename(prefix)
error = None
if name.startswith("."):
error = "environment name cannot start with '.': %s" % name
if name == ROOT_ENV_NAME:
error = "'%s' is a reserved environment name" % name
if exists(prefix):
if isdir(prefix) and "conda-meta" not in os.listdir(prefix):
return None
error = "prefix already exists: %s" % prefix
if error:
raise CondaValueError(error, json)
|
def check_prefix(prefix, json=False):
name = basename(prefix)
error = None
if name.startswith("."):
error = "environment name cannot start with '.': %s" % name
if name == ROOT_ENV_NAME:
error = "'%s' is a reserved environment name" % name
if exists(prefix):
if isdir(prefix) and not os.listdir(prefix):
return None
error = "prefix already exists: %s" % prefix
if error:
raise CondaValueError(error, json)
|
https://github.com/conda/conda/issues/3453
|
Traceback (most recent call last):
File "/opt/a/b/c/muunitnoc/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 472, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/opt/a/b/c/muunitnoc/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 144, in _main
exit_code = args.func(args, p)
File "/opt/a/b/c/muunitnoc/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 68, in execute
install(args, parser, 'create')
File "/opt/a/b/c/muunitnoc/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 171, in install
default_packages.remove(default_pkg)
AttributeError: 'tuple' object has no attribute 'remove'
|
AttributeError
|
def install(args, parser, command="install"):
"""
conda install, conda update, and conda create
"""
context.validate_all()
newenv = bool(command == "create")
isupdate = bool(command == "update")
isinstall = bool(command == "install")
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = context.prefix if newenv else context.prefix_w_legacy_search
if newenv:
check_prefix(prefix, json=context.json)
if context.force_32bit and is_root_prefix(prefix):
raise CondaValueError("cannot use CONDA_FORCE_32BIT=1 in root env")
if isupdate and not (args.file or args.all or args.packages):
raise CondaValueError(
"""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
"""
% prefix
)
linked = install_linked(prefix)
lnames = {name_dist(d) for d in linked}
if isupdate and not args.all:
for name in args.packages:
common.arg2spec(name, json=context.json, update=True)
if name not in lnames:
raise PackageNotFoundError(
name, "Package '%s' is not installed in %s" % (name, prefix)
)
if newenv and not args.no_default_packages:
default_packages = list(context.create_default_packages)
# Override defaults if they are specified at the command line
for default_pkg in context.create_default_packages:
if any(pkg.split("=")[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
else:
default_packages = []
common.ensure_use_local(args)
common.ensure_override_channels_requires_channel(args)
index_args = {
"use_cache": args.use_index_cache,
"channel_urls": args.channel or (),
"unknown": args.unknown,
"prepend": not args.override_channels,
"use_local": args.use_local,
}
specs = []
if args.file:
for fpath in args.file:
specs.extend(common.specs_from_url(fpath, json=context.json))
if "@EXPLICIT" in specs:
explicit(specs, prefix, verbose=not context.quiet, index_args=index_args)
return
elif getattr(args, "all", False):
if not linked:
raise PackageNotFoundError(
"", "There are no packages installed in the prefix %s" % prefix
)
specs.extend(nm for nm in lnames)
specs.extend(common.specs_from_args(args.packages, json=context.json))
if isinstall and args.revision:
get_revision(args.revision, json=context.json)
elif isinstall and not (args.file or args.packages):
raise CondaValueError(
"too few arguments, must supply command line package specs or --file"
)
num_cp = sum(s.endswith(".tar.bz2") for s in args.packages)
if num_cp:
if num_cp == len(args.packages):
explicit(args.packages, prefix, verbose=not context.quiet)
return
else:
raise CondaValueError(
"cannot mix specifications with conda package filenames"
)
# handle tar file containing conda packages
if len(args.packages) == 1:
tar_path = args.packages[0]
if tar_path.endswith(".tar"):
install_tar(prefix, tar_path, verbose=not context.quiet)
return
if newenv and args.clone:
package_diff = set(args.packages) - set(default_packages)
if package_diff:
raise TooManyArgumentsError(
0,
len(package_diff),
list(package_diff),
"did not expect any arguments for --clone",
)
clone(
args.clone,
prefix,
json=context.json,
quiet=context.quiet,
index_args=index_args,
)
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
return
index = get_index(
channel_urls=index_args["channel_urls"],
prepend=index_args["prepend"],
platform=None,
use_local=index_args["use_local"],
use_cache=index_args["use_cache"],
unknown=index_args["unknown"],
prefix=prefix,
)
r = Resolve(index)
ospecs = list(specs)
add_defaults_to_specs(r, linked, specs, update=isupdate)
# Don't update packages that are already up-to-date
if isupdate and not (args.all or args.force):
orig_packages = args.packages[:]
installed_metadata = [is_linked(prefix, dist) for dist in linked]
for name in orig_packages:
vers_inst = [m["version"] for m in installed_metadata if m["name"] == name]
build_inst = [
m["build_number"] for m in installed_metadata if m["name"] == name
]
channel_inst = [
m["channel"] for m in installed_metadata if m["name"] == name
]
try:
assert len(vers_inst) == 1, name
assert len(build_inst) == 1, name
assert len(channel_inst) == 1, name
except AssertionError as e:
raise CondaAssertionError(text_type(e))
pkgs = sorted(r.get_pkgs(name))
if not pkgs:
# Shouldn't happen?
continue
latest = pkgs[-1]
if all(
[
latest.version == vers_inst[0],
latest.build_number == build_inst[0],
latest.channel == channel_inst[0],
]
):
args.packages.remove(name)
if not args.packages:
from .main_list import print_packages
if not context.json:
regex = "^(%s)$" % "|".join(orig_packages)
print("# All requested packages already installed.")
print_packages(prefix, regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
if args.force:
args.no_deps = True
if args.no_deps:
only_names = set(s.split()[0] for s in ospecs)
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
raise CondaOSError("Error: could not create directory: %s" % prefix)
else:
raise CondaEnvironmentNotFoundError(prefix)
try:
if isinstall and args.revision:
actions = revert_actions(prefix, get_revision(args.revision), index)
else:
with common.json_progress_bars(json=context.json and not context.quiet):
actions = install_actions(
prefix,
index,
specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
always_copy=context.always_copy,
minimal_hint=args.alt_hint,
update_deps=context.update_dependencies,
)
except NoPackagesFoundError as e:
error_message = [e.args[0]]
if isupdate and args.all:
# Packages not found here just means they were installed but
# cannot be found any more. Just skip them.
if not context.json:
print("Warning: %s, skipping" % error_message)
else:
# Not sure what to do here
pass
args._skip = getattr(args, "_skip", ["anaconda"])
for pkg in e.pkgs:
p = pkg.split()[0]
if p in args._skip:
# Avoid infinite recursion. This can happen if a spec
# comes from elsewhere, like --file
raise
args._skip.append(p)
return install(args, parser, command=command)
else:
packages = {index[fn]["name"] for fn in index}
nfound = 0
for pkg in sorted(e.pkgs):
pkg = pkg.split()[0]
if pkg in packages:
continue
close = get_close_matches(pkg, packages, cutoff=0.7)
if not close:
continue
if nfound == 0:
error_message.append(
"\n\nClose matches found; did you mean one of these?\n"
)
error_message.append("\n %s: %s" % (pkg, ", ".join(close)))
nfound += 1
error_message.append("\n\nYou can search for packages on anaconda.org with")
error_message.append("\n\n anaconda search -t conda %s" % pkg)
if len(e.pkgs) > 1:
# Note this currently only happens with dependencies not found
error_message.append("\n\n(and similarly for the other packages)")
if not find_executable("anaconda", include_others=False):
error_message.append("\n\nYou may need to install the anaconda-client")
error_message.append(" command line client with")
error_message.append("\n\n conda install anaconda-client")
pinned_specs = get_pinned_specs(prefix)
if pinned_specs:
path = join(prefix, "conda-meta", "pinned")
error_message.append(
"\n\nNote that you have pinned specs in %s:" % path
)
error_message.append("\n\n %r" % pinned_specs)
error_message = "".join(error_message)
raise PackageNotFoundError("", error_message)
except (UnsatisfiableError, SystemExit) as e:
# Unsatisfiable package specifications/no such revision/import error
if e.args and "could not import" in e.args[0]:
raise CondaImportError(text_type(e))
raise
if nothing_to_do(actions) and not newenv:
from .main_list import print_packages
if not context.json:
regex = "^(%s)$" % "|".join(s.split()[0] for s in ospecs)
print("\n# All requested packages already installed.")
print_packages(prefix, regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
elif newenv:
# needed in the case of creating an empty env
from ..instructions import LINK, UNLINK, SYMLINK_CONDA
if not actions[LINK] and not actions[UNLINK]:
actions[SYMLINK_CONDA] = [context.root_dir]
if not context.json:
print()
print("Package plan for installation in environment %s:" % prefix)
display_actions(actions, index, show_channel_urls=context.show_channel_urls)
if command in {"install", "update"}:
check_write(command, prefix)
if not context.json:
common.confirm_yn(args)
elif args.dry_run:
common.stdout_json_success(actions=actions, dry_run=True)
raise DryRunExit
with common.json_progress_bars(json=context.json and not context.quiet):
try:
execute_actions(actions, index, verbose=not context.quiet)
if not (command == "update" and args.all):
try:
with open(join(prefix, "conda-meta", "history"), "a") as f:
f.write("# %s specs: %s\n" % (command, specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise CondaIOError("Can't write the history file", e)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError("Already locked: %s" % text_type(e))
else:
raise CondaRuntimeError("RuntimeError: %s" % e)
except SystemExit as e:
raise CondaSystemExit("Exiting", e)
if newenv:
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
if context.json:
common.stdout_json_success(actions=actions)
|
def install(args, parser, command="install"):
"""
conda install, conda update, and conda create
"""
context.validate_all()
newenv = bool(command == "create")
isupdate = bool(command == "update")
isinstall = bool(command == "install")
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = context.prefix if newenv else context.prefix_w_legacy_search
if newenv:
check_prefix(prefix, json=context.json)
if context.force_32bit and is_root_prefix(prefix):
raise CondaValueError("cannot use CONDA_FORCE_32BIT=1 in root env")
if isupdate and not (args.file or args.all or args.packages):
raise CondaValueError(
"""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
"""
% prefix
)
linked = install_linked(prefix)
lnames = {name_dist(d) for d in linked}
if isupdate and not args.all:
for name in args.packages:
common.arg2spec(name, json=context.json, update=True)
if name not in lnames:
raise PackageNotFoundError(
name, "Package '%s' is not installed in %s" % (name, prefix)
)
if newenv and not args.no_default_packages:
default_packages = context.create_default_packages[:]
# Override defaults if they are specified at the command line
for default_pkg in context.create_default_packages:
if any(pkg.split("=")[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
else:
default_packages = []
common.ensure_use_local(args)
common.ensure_override_channels_requires_channel(args)
index_args = {
"use_cache": args.use_index_cache,
"channel_urls": args.channel or (),
"unknown": args.unknown,
"prepend": not args.override_channels,
"use_local": args.use_local,
}
specs = []
if args.file:
for fpath in args.file:
specs.extend(common.specs_from_url(fpath, json=context.json))
if "@EXPLICIT" in specs:
explicit(specs, prefix, verbose=not context.quiet, index_args=index_args)
return
elif getattr(args, "all", False):
if not linked:
raise PackageNotFoundError(
"", "There are no packages installed in the prefix %s" % prefix
)
specs.extend(nm for nm in lnames)
specs.extend(common.specs_from_args(args.packages, json=context.json))
if isinstall and args.revision:
get_revision(args.revision, json=context.json)
elif isinstall and not (args.file or args.packages):
raise CondaValueError(
"too few arguments, must supply command line package specs or --file"
)
num_cp = sum(s.endswith(".tar.bz2") for s in args.packages)
if num_cp:
if num_cp == len(args.packages):
explicit(args.packages, prefix, verbose=not context.quiet)
return
else:
raise CondaValueError(
"cannot mix specifications with conda package filenames"
)
# handle tar file containing conda packages
if len(args.packages) == 1:
tar_path = args.packages[0]
if tar_path.endswith(".tar"):
install_tar(prefix, tar_path, verbose=not context.quiet)
return
if newenv and args.clone:
package_diff = set(args.packages) - set(default_packages)
if package_diff:
raise TooManyArgumentsError(
0,
len(package_diff),
list(package_diff),
"did not expect any arguments for --clone",
)
clone(
args.clone,
prefix,
json=context.json,
quiet=context.quiet,
index_args=index_args,
)
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
return
index = get_index(
channel_urls=index_args["channel_urls"],
prepend=index_args["prepend"],
platform=None,
use_local=index_args["use_local"],
use_cache=index_args["use_cache"],
unknown=index_args["unknown"],
prefix=prefix,
)
r = Resolve(index)
ospecs = list(specs)
add_defaults_to_specs(r, linked, specs, update=isupdate)
# Don't update packages that are already up-to-date
if isupdate and not (args.all or args.force):
orig_packages = args.packages[:]
installed_metadata = [is_linked(prefix, dist) for dist in linked]
for name in orig_packages:
vers_inst = [m["version"] for m in installed_metadata if m["name"] == name]
build_inst = [
m["build_number"] for m in installed_metadata if m["name"] == name
]
channel_inst = [
m["channel"] for m in installed_metadata if m["name"] == name
]
try:
assert len(vers_inst) == 1, name
assert len(build_inst) == 1, name
assert len(channel_inst) == 1, name
except AssertionError as e:
raise CondaAssertionError(text_type(e))
pkgs = sorted(r.get_pkgs(name))
if not pkgs:
# Shouldn't happen?
continue
latest = pkgs[-1]
if all(
[
latest.version == vers_inst[0],
latest.build_number == build_inst[0],
latest.channel == channel_inst[0],
]
):
args.packages.remove(name)
if not args.packages:
from .main_list import print_packages
if not context.json:
regex = "^(%s)$" % "|".join(orig_packages)
print("# All requested packages already installed.")
print_packages(prefix, regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
if args.force:
args.no_deps = True
if args.no_deps:
only_names = set(s.split()[0] for s in ospecs)
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
raise CondaOSError("Error: could not create directory: %s" % prefix)
else:
raise CondaEnvironmentNotFoundError(prefix)
try:
if isinstall and args.revision:
actions = revert_actions(prefix, get_revision(args.revision), index)
else:
with common.json_progress_bars(json=context.json and not context.quiet):
actions = install_actions(
prefix,
index,
specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
always_copy=context.always_copy,
minimal_hint=args.alt_hint,
update_deps=context.update_dependencies,
)
except NoPackagesFoundError as e:
error_message = [e.args[0]]
if isupdate and args.all:
# Packages not found here just means they were installed but
# cannot be found any more. Just skip them.
if not context.json:
print("Warning: %s, skipping" % error_message)
else:
# Not sure what to do here
pass
args._skip = getattr(args, "_skip", ["anaconda"])
for pkg in e.pkgs:
p = pkg.split()[0]
if p in args._skip:
# Avoid infinite recursion. This can happen if a spec
# comes from elsewhere, like --file
raise
args._skip.append(p)
return install(args, parser, command=command)
else:
packages = {index[fn]["name"] for fn in index}
nfound = 0
for pkg in sorted(e.pkgs):
pkg = pkg.split()[0]
if pkg in packages:
continue
close = get_close_matches(pkg, packages, cutoff=0.7)
if not close:
continue
if nfound == 0:
error_message.append(
"\n\nClose matches found; did you mean one of these?\n"
)
error_message.append("\n %s: %s" % (pkg, ", ".join(close)))
nfound += 1
error_message.append("\n\nYou can search for packages on anaconda.org with")
error_message.append("\n\n anaconda search -t conda %s" % pkg)
if len(e.pkgs) > 1:
# Note this currently only happens with dependencies not found
error_message.append("\n\n(and similarly for the other packages)")
if not find_executable("anaconda", include_others=False):
error_message.append("\n\nYou may need to install the anaconda-client")
error_message.append(" command line client with")
error_message.append("\n\n conda install anaconda-client")
pinned_specs = get_pinned_specs(prefix)
if pinned_specs:
path = join(prefix, "conda-meta", "pinned")
error_message.append(
"\n\nNote that you have pinned specs in %s:" % path
)
error_message.append("\n\n %r" % pinned_specs)
error_message = "".join(error_message)
raise PackageNotFoundError("", error_message)
except (UnsatisfiableError, SystemExit) as e:
# Unsatisfiable package specifications/no such revision/import error
if e.args and "could not import" in e.args[0]:
raise CondaImportError(text_type(e))
raise
if nothing_to_do(actions) and not newenv:
from .main_list import print_packages
if not context.json:
regex = "^(%s)$" % "|".join(s.split()[0] for s in ospecs)
print("\n# All requested packages already installed.")
print_packages(prefix, regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
elif newenv:
# needed in the case of creating an empty env
from ..instructions import LINK, UNLINK, SYMLINK_CONDA
if not actions[LINK] and not actions[UNLINK]:
actions[SYMLINK_CONDA] = [context.root_dir]
if not context.json:
print()
print("Package plan for installation in environment %s:" % prefix)
display_actions(actions, index, show_channel_urls=context.show_channel_urls)
if command in {"install", "update"}:
check_write(command, prefix)
if not context.json:
common.confirm_yn(args)
elif args.dry_run:
common.stdout_json_success(actions=actions, dry_run=True)
raise DryRunExit
with common.json_progress_bars(json=context.json and not context.quiet):
try:
execute_actions(actions, index, verbose=not context.quiet)
if not (command == "update" and args.all):
try:
with open(join(prefix, "conda-meta", "history"), "a") as f:
f.write("# %s specs: %s\n" % (command, specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise CondaIOError("Can't write the history file", e)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError("Already locked: %s" % text_type(e))
else:
raise CondaRuntimeError("RuntimeError: %s" % e)
except SystemExit as e:
raise CondaSystemExit("Exiting", e)
if newenv:
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
if context.json:
common.stdout_json_success(actions=actions)
|
https://github.com/conda/conda/issues/3453
|
Traceback (most recent call last):
File "/opt/a/b/c/muunitnoc/anaconda/lib/python2.7/site-packages/conda/exceptions.py", line 472, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/opt/a/b/c/muunitnoc/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 144, in _main
exit_code = args.func(args, p)
File "/opt/a/b/c/muunitnoc/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 68, in execute
install(args, parser, 'create')
File "/opt/a/b/c/muunitnoc/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 171, in install
default_packages.remove(default_pkg)
AttributeError: 'tuple' object has no attribute 'remove'
|
AttributeError
|
def install(args, parser, command="install"):
"""
conda install, conda update, and conda create
"""
context.validate_all()
newenv = bool(command == "create")
isupdate = bool(command == "update")
isinstall = bool(command == "install")
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = context.prefix if newenv else context.prefix_w_legacy_search
if newenv:
check_prefix(prefix, json=context.json)
if context.force_32bit and is_root_prefix(prefix):
raise CondaValueError("cannot use CONDA_FORCE_32BIT=1 in root env")
if isupdate and not (args.file or args.all or args.packages):
raise CondaValueError(
"""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
"""
% prefix
)
linked = install_linked(prefix)
lnames = {name_dist(d) for d in linked}
if isupdate and not args.all:
for name in args.packages:
common.arg2spec(name, json=context.json, update=True)
if name not in lnames:
raise PackageNotFoundError(
name, "Package '%s' is not installed in %s" % (name, prefix)
)
if newenv and not args.no_default_packages:
default_packages = context.create_default_packages[:]
# Override defaults if they are specified at the command line
for default_pkg in context.create_default_packages:
if any(pkg.split("=")[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
else:
default_packages = []
common.ensure_use_local(args)
common.ensure_override_channels_requires_channel(args)
index_args = {
"use_cache": args.use_index_cache,
"channel_urls": args.channel or (),
"unknown": args.unknown,
"prepend": not args.override_channels,
"use_local": args.use_local,
}
specs = []
if args.file:
for fpath in args.file:
specs.extend(common.specs_from_url(fpath, json=context.json))
if "@EXPLICIT" in specs:
explicit(specs, prefix, verbose=not context.quiet, index_args=index_args)
return
elif getattr(args, "all", False):
if not linked:
raise PackageNotFoundError(
"", "There are no packages installed in the prefix %s" % prefix
)
specs.extend(nm for nm in lnames)
specs.extend(common.specs_from_args(args.packages, json=context.json))
if isinstall and args.revision:
get_revision(args.revision, json=context.json)
elif isinstall and not (args.file or args.packages):
raise CondaValueError(
"too few arguments, must supply command line package specs or --file"
)
num_cp = sum(s.endswith(".tar.bz2") for s in args.packages)
if num_cp:
if num_cp == len(args.packages):
explicit(args.packages, prefix, verbose=not context.quiet)
return
else:
raise CondaValueError(
"cannot mix specifications with conda package filenames"
)
# handle tar file containing conda packages
if len(args.packages) == 1:
tar_path = args.packages[0]
if tar_path.endswith(".tar"):
install_tar(prefix, tar_path, verbose=not context.quiet)
return
if newenv and args.clone:
package_diff = set(args.packages) - set(default_packages)
if package_diff:
raise TooManyArgumentsError(
0,
len(package_diff),
list(package_diff),
"did not expect any arguments for --clone",
)
clone(
args.clone,
prefix,
json=context.json,
quiet=context.quiet,
index_args=index_args,
)
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
return
index = get_index(
channel_urls=index_args["channel_urls"],
prepend=index_args["prepend"],
platform=None,
use_local=index_args["use_local"],
use_cache=index_args["use_cache"],
unknown=index_args["unknown"],
prefix=prefix,
)
r = Resolve(index)
ospecs = list(specs)
add_defaults_to_specs(r, linked, specs, update=isupdate)
# Don't update packages that are already up-to-date
if isupdate and not (args.all or args.force):
orig_packages = args.packages[:]
installed_metadata = [is_linked(prefix, dist) for dist in linked]
for name in orig_packages:
vers_inst = [m["version"] for m in installed_metadata if m["name"] == name]
build_inst = [
m["build_number"] for m in installed_metadata if m["name"] == name
]
channel_inst = [
m["channel"] for m in installed_metadata if m["name"] == name
]
try:
assert len(vers_inst) == 1, name
assert len(build_inst) == 1, name
assert len(channel_inst) == 1, name
except AssertionError as e:
raise CondaAssertionError(text_type(e))
pkgs = sorted(r.get_pkgs(name))
if not pkgs:
# Shouldn't happen?
continue
latest = pkgs[-1]
if all(
[
latest.version == vers_inst[0],
latest.build_number == build_inst[0],
latest.channel == channel_inst[0],
]
):
args.packages.remove(name)
if not args.packages:
from .main_list import print_packages
if not context.json:
regex = "^(%s)$" % "|".join(orig_packages)
print("# All requested packages already installed.")
print_packages(prefix, regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
if args.force:
args.no_deps = True
if args.no_deps:
only_names = set(s.split()[0] for s in ospecs)
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
raise CondaOSError("Error: could not create directory: %s" % prefix)
else:
raise CondaEnvironmentNotFoundError(prefix)
try:
if isinstall and args.revision:
actions = revert_actions(prefix, get_revision(args.revision), index)
else:
with common.json_progress_bars(json=context.json and not context.quiet):
actions = install_actions(
prefix,
index,
specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
always_copy=context.always_copy,
minimal_hint=args.alt_hint,
update_deps=context.update_dependencies,
)
except NoPackagesFoundError as e:
error_message = [e.args[0]]
if isupdate and args.all:
# Packages not found here just means they were installed but
# cannot be found any more. Just skip them.
if not context.json:
print("Warning: %s, skipping" % error_message)
else:
# Not sure what to do here
pass
args._skip = getattr(args, "_skip", ["anaconda"])
for pkg in e.pkgs:
p = pkg.split()[0]
if p in args._skip:
# Avoid infinite recursion. This can happen if a spec
# comes from elsewhere, like --file
raise
args._skip.append(p)
return install(args, parser, command=command)
else:
packages = {index[fn]["name"] for fn in index}
nfound = 0
for pkg in sorted(e.pkgs):
pkg = pkg.split()[0]
if pkg in packages:
continue
close = get_close_matches(pkg, packages, cutoff=0.7)
if not close:
continue
if nfound == 0:
error_message.append(
"\n\nClose matches found; did you mean one of these?\n"
)
error_message.append("\n %s: %s" % (pkg, ", ".join(close)))
nfound += 1
error_message.append("\n\nYou can search for packages on anaconda.org with")
error_message.append("\n\n anaconda search -t conda %s" % pkg)
if len(e.pkgs) > 1:
# Note this currently only happens with dependencies not found
error_message.append("\n\n(and similarly for the other packages)")
if not find_executable("anaconda", include_others=False):
error_message.append("\n\nYou may need to install the anaconda-client")
error_message.append(" command line client with")
error_message.append("\n\n conda install anaconda-client")
pinned_specs = get_pinned_specs(prefix)
if pinned_specs:
path = join(prefix, "conda-meta", "pinned")
error_message.append(
"\n\nNote that you have pinned specs in %s:" % path
)
error_message.append("\n\n %r" % pinned_specs)
error_message = "".join(error_message)
raise PackageNotFoundError("", error_message)
except (UnsatisfiableError, SystemExit) as e:
# Unsatisfiable package specifications/no such revision/import error
if e.args and "could not import" in e.args[0]:
raise CondaImportError(text_type(e))
raise
if nothing_to_do(actions) and not newenv:
from .main_list import print_packages
if not context.json:
regex = "^(%s)$" % "|".join(s.split()[0] for s in ospecs)
print("\n# All requested packages already installed.")
print_packages(prefix, regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
elif newenv:
# needed in the case of creating an empty env
from ..instructions import LINK, UNLINK, SYMLINK_CONDA
if not actions[LINK] and not actions[UNLINK]:
actions[SYMLINK_CONDA] = [context.root_dir]
if not context.json:
print()
print("Package plan for installation in environment %s:" % prefix)
display_actions(actions, index, show_channel_urls=context.show_channel_urls)
if command in {"install", "update"}:
check_write(command, prefix)
if not context.json:
common.confirm_yn(args)
elif args.dry_run:
common.stdout_json_success(actions=actions, dry_run=True)
raise DryRunExit
with common.json_progress_bars(json=context.json and not context.quiet):
try:
execute_actions(actions, index, verbose=not context.quiet)
if not (command == "update" and args.all):
try:
with open(join(prefix, "conda-meta", "history"), "a") as f:
f.write("# %s specs: %s\n" % (command, specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise CondaIOError("Can't write the history file", e)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError("Already locked: %s" % text_type(e))
else:
raise CondaRuntimeError("RuntimeError: %s" % e)
except SystemExit as e:
raise CondaSystemExit("Exiting", e)
if newenv:
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
if context.json:
common.stdout_json_success(actions=actions)
|
def install(args, parser, command="install"):
"""
conda install, conda update, and conda create
"""
context.validate_all()
newenv = bool(command == "create")
isupdate = bool(command == "update")
isinstall = bool(command == "install")
if newenv:
common.ensure_name_or_prefix(args, command)
prefix = context.prefix if newenv else context.prefix_w_legacy_search
if newenv:
check_prefix(prefix, json=context.json)
if context.force_32bit and is_root_prefix(prefix):
raise CondaValueError("cannot use CONDA_FORCE_32BIT=1 in root env")
if isupdate and not (args.file or args.all or args.packages):
raise CondaValueError(
"""no package names supplied
# If you want to update to a newer version of Anaconda, type:
#
# $ conda update --prefix %s anaconda
"""
% prefix
)
linked = install_linked(prefix)
lnames = {name_dist(d) for d in linked}
if isupdate and not args.all:
for name in args.packages:
common.arg2spec(name, json=context.json, update=True)
if name not in lnames:
raise PackageNotFoundError(
name, "Package '%s' is not installed in %s" % (name, prefix)
)
if newenv and not args.no_default_packages:
default_packages = context.create_default_packages[:]
# Override defaults if they are specified at the command line
for default_pkg in context.create_default_packages:
if any(pkg.split("=")[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
args.packages.extend(default_packages)
else:
default_packages = []
common.ensure_use_local(args)
common.ensure_override_channels_requires_channel(args)
index_args = {
"use_cache": args.use_index_cache,
"channel_urls": args.channel or (),
"unknown": args.unknown,
"prepend": not args.override_channels,
"use_local": args.use_local,
}
specs = []
if args.file:
for fpath in args.file:
specs.extend(common.specs_from_url(fpath, json=context.json))
if "@EXPLICIT" in specs:
explicit(specs, prefix, verbose=not context.quiet, index_args=index_args)
return
elif getattr(args, "all", False):
if not linked:
raise PackageNotFoundError(
"", "There are no packages installed in the prefix %s" % prefix
)
specs.extend(nm for nm in lnames)
specs.extend(common.specs_from_args(args.packages, json=context.json))
if isinstall and args.revision:
get_revision(args.revision, json=context.json)
elif isinstall and not (args.file or args.packages):
raise CondaValueError(
"too few arguments, must supply command line package specs or --file"
)
num_cp = sum(s.endswith(".tar.bz2") for s in args.packages)
if num_cp:
if num_cp == len(args.packages):
explicit(args.packages, prefix, verbose=not context.quiet)
return
else:
raise CondaValueError(
"cannot mix specifications with conda package filenames"
)
# handle tar file containing conda packages
if len(args.packages) == 1:
tar_path = args.packages[0]
if tar_path.endswith(".tar"):
install_tar(prefix, tar_path, verbose=not context.quiet)
return
if newenv and args.clone:
package_diff = set(args.packages) - set(default_packages)
if package_diff:
raise TooManyArgumentsError(
0,
len(package_diff),
list(package_diff),
"did not expect any arguments for --clone",
)
clone(
args.clone,
prefix,
json=context.json,
quiet=context.quiet,
index_args=index_args,
)
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
return
index = get_index(
channel_urls=index_args["channel_urls"],
prepend=index_args["prepend"],
platform=None,
use_local=index_args["use_local"],
use_cache=index_args["use_cache"],
unknown=index_args["unknown"],
prefix=prefix,
)
r = Resolve(index)
ospecs = list(specs)
add_defaults_to_specs(r, linked, specs, update=isupdate)
# Don't update packages that are already up-to-date
if isupdate and not (args.all or args.force):
orig_packages = args.packages[:]
installed_metadata = [is_linked(prefix, dist) for dist in linked]
for name in orig_packages:
vers_inst = [m["version"] for m in installed_metadata if m["name"] == name]
build_inst = [
m["build_number"] for m in installed_metadata if m["name"] == name
]
channel_inst = [
m["channel"] for m in installed_metadata if m["name"] == name
]
try:
assert len(vers_inst) == 1, name
assert len(build_inst) == 1, name
assert len(channel_inst) == 1, name
except AssertionError as e:
raise CondaAssertionError(text_type(e))
pkgs = sorted(r.get_pkgs(name))
if not pkgs:
# Shouldn't happen?
continue
latest = pkgs[-1]
if all(
[
latest.version == vers_inst[0],
latest.build_number == build_inst[0],
latest.channel == channel_inst[0],
]
):
args.packages.remove(name)
if not args.packages:
from .main_list import print_packages
if not context.json:
regex = "^(%s)$" % "|".join(orig_packages)
print("# All requested packages already installed.")
print_packages(prefix, regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
if args.force:
args.no_deps = True
if args.no_deps:
only_names = set(s.split()[0] for s in ospecs)
else:
only_names = None
if not isdir(prefix) and not newenv:
if args.mkdir:
try:
os.makedirs(prefix)
except OSError:
raise CondaOSError("Error: could not create directory: %s" % prefix)
else:
raise CondaEnvironmentNotFoundError(prefix)
try:
if isinstall and args.revision:
actions = revert_actions(prefix, get_revision(args.revision), index)
else:
with common.json_progress_bars(json=context.json and not context.quiet):
actions = install_actions(
prefix,
index,
specs,
force=args.force,
only_names=only_names,
pinned=args.pinned,
always_copy=context.always_copy,
minimal_hint=args.alt_hint,
update_deps=context.update_dependencies,
)
except NoPackagesFoundError as e:
error_message = [e.args[0]]
if isupdate and args.all:
# Packages not found here just means they were installed but
# cannot be found any more. Just skip them.
if not context.json:
print("Warning: %s, skipping" % error_message)
else:
# Not sure what to do here
pass
args._skip = getattr(args, "_skip", ["anaconda"])
for pkg in e.pkgs:
p = pkg.split()[0]
if p in args._skip:
# Avoid infinite recursion. This can happen if a spec
# comes from elsewhere, like --file
raise
args._skip.append(p)
return install(args, parser, command=command)
else:
packages = {index[fn]["name"] for fn in index}
nfound = 0
for pkg in sorted(e.pkgs):
pkg = pkg.split()[0]
if pkg in packages:
continue
close = get_close_matches(pkg, packages, cutoff=0.7)
if not close:
continue
if nfound == 0:
error_message.append(
"\n\nClose matches found; did you mean one of these?\n"
)
error_message.append("\n %s: %s" % (pkg, ", ".join(close)))
nfound += 1
error_message.append("\n\nYou can search for packages on anaconda.org with")
error_message.append("\n\n anaconda search -t conda %s" % pkg)
if len(e.pkgs) > 1:
# Note this currently only happens with dependencies not found
error_message.append("\n\n(and similarly for the other packages)")
if not find_executable("anaconda", include_others=False):
error_message.append("\n\nYou may need to install the anaconda-client")
error_message.append(" command line client with")
error_message.append("\n\n conda install anaconda-client")
pinned_specs = get_pinned_specs(prefix)
if pinned_specs:
path = join(prefix, "conda-meta", "pinned")
error_message.append(
"\n\nNote that you have pinned specs in %s:" % path
)
error_message.append("\n\n %r" % pinned_specs)
error_message = "".join(error_message)
raise PackageNotFoundError("", error_message)
except (UnsatisfiableError, SystemExit) as e:
# Unsatisfiable package specifications/no such revision/import error
if e.args and "could not import" in e.args[0]:
raise CondaImportError(text_type(e))
raise CondaError("UnsatisfiableSpecifications", e)
if nothing_to_do(actions) and not newenv:
from .main_list import print_packages
if not context.json:
regex = "^(%s)$" % "|".join(s.split()[0] for s in ospecs)
print("\n# All requested packages already installed.")
print_packages(prefix, regex)
else:
common.stdout_json_success(
message="All requested packages already installed."
)
return
elif newenv:
# needed in the case of creating an empty env
from ..instructions import LINK, UNLINK, SYMLINK_CONDA
if not actions[LINK] and not actions[UNLINK]:
actions[SYMLINK_CONDA] = [context.root_dir]
if not context.json:
print()
print("Package plan for installation in environment %s:" % prefix)
display_actions(actions, index, show_channel_urls=context.show_channel_urls)
if command in {"install", "update"}:
check_write(command, prefix)
if not context.json:
common.confirm_yn(args)
elif args.dry_run:
common.stdout_json_success(actions=actions, dry_run=True)
raise DryRunExit
with common.json_progress_bars(json=context.json and not context.quiet):
try:
execute_actions(actions, index, verbose=not context.quiet)
if not (command == "update" and args.all):
try:
with open(join(prefix, "conda-meta", "history"), "a") as f:
f.write("# %s specs: %s\n" % (command, specs))
except IOError as e:
if e.errno == errno.EACCES:
log.debug("Can't write the history file")
else:
raise CondaIOError("Can't write the history file", e)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError("Already locked: %s" % text_type(e))
else:
raise CondaRuntimeError("RuntimeError: %s" % e)
except SystemExit as e:
raise CondaSystemExit("Exiting", e)
if newenv:
append_env(prefix)
touch_nonadmin(prefix)
if not context.json:
print(print_activate(args.name if args.name else prefix))
if context.json:
common.stdout_json_success(actions=actions)
|
https://github.com/conda/conda/issues/3409
|
Traceback (most recent call last):
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/exceptions.py", line 471, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/cli/main.py", line 144, in _main
exit_code = args.func(args, p)
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/cli/install.py", line 370, in install
raise CondaError('UnsatisfiableSpecifications', e)
TypeError: __init__() takes exactly 2 arguments (3 given)
|
TypeError
|
def explicit(
specs, prefix, verbose=False, force_extract=True, fetch_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
actions["op_order"] = RM_FETCHED, FETCH, RM_EXTRACTED, EXTRACT, UNLINK, LINK
linked = {name_dist(dist): dist for dist in install_linked(prefix)}
fetch_args = fetch_args or {}
index = index or {}
verifies = []
channels = {}
for spec in specs:
if spec == "@EXPLICIT":
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit("Could not parse explicit URL: %s" % spec)
url_p, fn, md5 = m.group("url_p"), m.group("fn"), m.group("md5")
if not is_url(url_p):
if url_p is None:
url_p = curdir
elif not isdir(url_p):
sys.exit("Error: file not found: %s" % join(url_p, fn))
url_p = utils_url_path(url_p).rstrip("/")
url = "{0}/{1}".format(url_p, fn)
# See if the URL refers to a package in our cache
prefix = pkg_path = dir_path = None
if url.startswith("file://"):
prefix = cached_url(url)
# If not, determine the channel name from the URL
if prefix is None:
_, schannel = url_channel(url)
prefix = "" if schannel == "defaults" else schannel + "::"
fn = prefix + fn
dist = fn[:-8]
pkg_path = is_fetched(dist)
dir_path = is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
if pkg_path and (md5 and md5_file(pkg_path) != md5):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
if fn not in index or index[fn].get("not_fetched"):
channels[url_p + "/"] = (schannel, 0)
actions[FETCH].append(dist)
verifies.append((dist + ".tar.bz2", md5))
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index.update(fetch_index(channels, **fetch_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and "md5" not in info:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if md5 and info["md5"] != md5:
sys.exit(
"MD5 mismatch for: %s\n spec: %s\n repo: %s"
% (fn, md5, info["md5"])
)
execute_actions(actions, index=index, verbose=verbose)
return actions
|
def explicit(
specs, prefix, verbose=False, force_extract=True, fetch_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
actions["op_order"] = RM_FETCHED, FETCH, RM_EXTRACTED, EXTRACT, UNLINK, LINK
linked = {name_dist(dist): dist for dist in install_linked(prefix)}
fetch_args = fetch_args or {}
index = index or {}
verifies = []
channels = {}
for spec in specs:
if spec == "@EXPLICIT":
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit("Could not parse explicit URL: %s" % spec)
url_p, fn, md5 = m.group("url_p"), m.group("fn"), m.group("md5")
if not is_url(url_p):
if url_p is None:
url_p = curdir
elif not isdir(url_p):
sys.exit("Error: file not found: %s" % join(url_p, fn))
url_p = utils_url_path(url_p).rstrip("/")
url = "{0}/{1}".format(url_p, fn)
# See if the URL refers to a package in our cache
prefix = pkg_path = dir_path = None
if url.startswith("file://"):
prefix = cached_url(url)
# If not, determine the channel name from the URL
if prefix is None:
_, schannel = url_channel(url)
prefix = "" if schannel == "defaults" else schannel + "::"
fn = prefix + fn
dist = fn[:-8]
pkg_path = is_fetched(dist)
dir_path = is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
if pkg_path and (md5 and md5_file(pkg_path) != md5):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
if fn not in index or index[fn].get(not_fetched):
channels[url_p + "/"] = (schannel, 0)
actions[FETCH].append(dist)
verifies.append((dist + ".tar.bz2", md5))
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index.update(fetch_index(channels, **fetch_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and "md5" not in info:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if md5 and info["md5"] != md5:
sys.exit(
"MD5 mismatch for: %s\n spec: %s\n repo: %s"
% (fn, md5, info["md5"])
)
execute_actions(actions, index=index, verbose=verbose)
return actions
|
https://github.com/conda/conda/issues/2633
|
[root@hostname ~]# /opt/wakari/anaconda/bin/conda create -p ~/new-env --clone /opt/wakari/anaconda/
Using Anaconda Cloud api site https://api.anaconda.org
Fetching package metadata: ......
src_prefix: '/opt/wakari/anaconda'
dst_prefix: '/root/new-env'
Packages: 313
Files: 47057
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/opt/wakari/anaconda/bin/conda", line 6, in <module>
sys.exit(main())
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 139, in main
args_func(args, p)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 146, in args_func
args.func(args, p)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 49, in execute
install.install(args, parser, 'create')
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 247, in install
clone(args.clone, prefix, json=args.json, quiet=args.quiet, index=index)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 84, in clone
quiet=quiet, index=index)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/misc.py", line 246, in clone_env
sorted_dists = r.dependency_sort(dists)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/resolve.py", line 729, in dependency_sort
depends = lookup(value)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/resolve.py", line 724, in lookup
return set(ms.name for ms in self.ms_depends(value + '.tar.bz2'))
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/resolve.py", line 573, in ms_depends
deps = [MatchSpec(d) for d in self.index[fn].get('depends', [])]
KeyError: 'r-zoo-1.7_12-r3.2.2_1a.tar.bz2'
[root@hostname ~]#
|
KeyError
|
def clone_env(prefix1, prefix2, verbose=True, quiet=False, fetch_args=None):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
# Discard conda and any package that depends on it
drecs = linked_data(prefix1)
filter = {}
found = True
while found:
found = False
for dist, info in iteritems(drecs):
name = info["name"]
if name in filter:
continue
if name == "conda":
filter["conda"] = dist
found = True
break
for dep in info.get("depends", []):
if MatchSpec(dep).name in filter:
filter[name] = dist
found = True
if filter:
if not quiet:
print(
"The following packages cannot be cloned out of the root environment:"
)
for pkg in itervalues(filter):
print(" - " + pkg)
drecs = {
dist: info
for dist, info in iteritems(drecs)
if info["name"] not in filter
}
# Resolve URLs for packages that do not have URLs
r = None
index = {}
unknowns = [dist for dist, info in iteritems(drecs) if "url" not in info]
notfound = []
if unknowns:
fetch_args = fetch_args or {}
index = get_index(**fetch_args)
r = Resolve(index, sort=True)
for dist in unknowns:
name = name_dist(dist)
fn = dist2filename(dist)
fkeys = [d for d in r.index.keys() if r.index[d]["fn"] == fn]
if fkeys:
del drecs[dist]
dist = sorted(fkeys, key=r.version_key, reverse=True)[0]
drecs[dist] = r.index[dist]
else:
notfound.append(fn)
if notfound:
what = "Package%s " % ("" if len(notfound) == 1 else "s")
notfound = "\n".join(" - " + fn for fn in notfound)
msg = "%s missing in current %s channels:%s" % (what, subdir, notfound)
raise RuntimeError(msg)
# Assemble the URL and channel list
urls = {}
for dist, info in iteritems(drecs):
fkey = dist + ".tar.bz2"
if fkey not in index:
info["not_fetched"] = True
index[fkey] = info
r = None
urls[dist] = info["url"]
if r is None:
r = Resolve(index)
dists = r.dependency_sort(urls.keys())
urls = [urls[d] for d in dists]
if verbose:
print("Packages: %d" % len(dists))
print("Files: %d" % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
os.unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
os.symlink(os.readlink(src), dst)
continue
try:
with open(src, "rb") as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode("utf-8")
s = s.replace(prefix1, prefix2)
data = s.encode("utf-8")
except UnicodeDecodeError: # data is binary
pass
with open(dst, "wb") as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = explicit(
urls,
prefix2,
verbose=not quiet,
index=index,
force_extract=False,
fetch_args=fetch_args,
)
return actions, untracked_files
|
def clone_env(prefix1, prefix2, verbose=True, quiet=False, fetch_args=None):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
# Discard conda and any package that depends on it
drecs = linked_data(prefix1)
filter = {}
found = True
while found:
found = False
for dist, info in iteritems(drecs):
name = info["name"]
if name in filter:
continue
if name == "conda":
filter["conda"] = dist
found = True
break
for dep in info.get("depends", []):
if MatchSpec(dep).name in filter:
filter[name] = dist
found = True
if filter:
if not quiet:
print(
"The following packages cannot be cloned out of the root environment:"
)
for pkg in itervalues(filter):
print(" - " + pkg)
drecs = {
dist: info
for dist, info in iteritems(drecs)
if info["name"] not in filter
}
# Resolve URLs for packages that do not have URLs
r = None
index = {}
unknowns = [dist for dist, info in iteritems(drecs) if "url" not in info]
notfound = []
if unknowns:
fetch_args = fetch_args or {}
index = get_index(**fetch_args)
r = Resolve(index, sort=True)
for dist in unknowns:
name = name_dist(dist)
fn = dist2filename(dist)
fkeys = [d for d in r.index.keys() if r.index[d]["fn"] == fn]
if fkeys:
del drecs[dist]
dist = sorted(fkeys, key=r.version_key, reverse=True)[0]
drecs[dist] = r.index[dist]
else:
notfound.append(fn)
if notfound:
what = "Package%s " % ("" if len(notfound) == 1 else "s")
notfound = "\n".join(" - " + fn for fn in notfound)
msg = "%s missing in current %s channels:%s" % (what, subdir, notfound)
raise RuntimeError(msg)
# Assemble the URL and channel list
urls = {}
resolver = None
for dist, info in iteritems(drecs):
fkey = dist + ".tar.bz2"
if fkey not in index:
info["not_fetched"] = True
index[fkey] = info
r = None
urls[dist] = info["url"]
if r is None:
r = Resolve(index)
dists = r.dependency_sort(urls.keys())
urls = [urls[d] for d in dists]
if verbose:
print("Packages: %d" % len(dists))
print("Files: %d" % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
os.unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
os.symlink(os.readlink(src), dst)
continue
try:
with open(src, "rb") as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode("utf-8")
s = s.replace(prefix1, prefix2)
data = s.encode("utf-8")
except UnicodeDecodeError: # data is binary
pass
with open(dst, "wb") as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = explicit(
urls,
prefix2,
verbose=not quiet,
index=index,
force_extract=False,
fetch_args=fetch_args,
)
return actions, untracked_files
|
https://github.com/conda/conda/issues/2633
|
[root@hostname ~]# /opt/wakari/anaconda/bin/conda create -p ~/new-env --clone /opt/wakari/anaconda/
Using Anaconda Cloud api site https://api.anaconda.org
Fetching package metadata: ......
src_prefix: '/opt/wakari/anaconda'
dst_prefix: '/root/new-env'
Packages: 313
Files: 47057
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/opt/wakari/anaconda/bin/conda", line 6, in <module>
sys.exit(main())
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 139, in main
args_func(args, p)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 146, in args_func
args.func(args, p)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 49, in execute
install.install(args, parser, 'create')
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 247, in install
clone(args.clone, prefix, json=args.json, quiet=args.quiet, index=index)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 84, in clone
quiet=quiet, index=index)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/misc.py", line 246, in clone_env
sorted_dists = r.dependency_sort(dists)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/resolve.py", line 729, in dependency_sort
depends = lookup(value)
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/resolve.py", line 724, in lookup
return set(ms.name for ms in self.ms_depends(value + '.tar.bz2'))
File "/opt/wakari/anaconda/lib/python2.7/site-packages/conda/resolve.py", line 573, in ms_depends
deps = [MatchSpec(d) for d in self.index[fn].get('depends', [])]
KeyError: 'r-zoo-1.7_12-r3.2.2_1a.tar.bz2'
[root@hostname ~]#
|
KeyError
|
def environment(self):
dependencies = []
with open(self.filename) as reqfile:
for line in reqfile:
line = line.strip()
if not line or line.startswith("#"):
continue
dependencies.append(line)
return env.Environment(name=self.name, dependencies=dependencies)
|
def environment(self):
dependencies = []
with open(self.filename) as reqfile:
for line in reqfile:
dependencies.append(line)
return env.Environment(name=self.name, dependencies=dependencies)
|
https://github.com/conda/conda/issues/3253
|
n unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.2.1
conda is private : False
conda-env version : 2.5.2
conda-build version : 1.21.11+0.g5b44ab3.dirty
python version : 2.7.12.final.0
requests version : 2.10.0
root environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7 (writable)
default environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs/anabase
envs directories : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs
package cache : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/pkgs
channel URLs : file:///reg/g/psdm/sw/conda/channels/system-rhel7
file:///reg/g/psdm/sw/conda/channels/psana-rhel7
file:///reg/g/psdm/sw/conda/channels/external-rhel7
defaults
scikit-beam
file:///reg/g/psdm/sw/conda/channels/testing-rhel7
config file : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/.condarc
offline mode : False
`$ /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/bin/conda-env export`
Traceback (most recent call last):
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/exceptions.py", line 403, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda_env/cli/main_export.py", line 93, in execute
ignore_channels=args.ignore_prefix)
AttributeError: 'Namespace' object has no attribute 'ignore_prefix'
../manage/config/environment-anabase-1.0.0.yml (END)
|
AttributeError
|
def execute(args, parser):
if not args.name:
# Note, this is a hack fofr get_prefix that assumes argparse results
# TODO Refactor common.get_prefix
name = os.environ.get("CONDA_DEFAULT_ENV", False)
if not name:
msg = "Unable to determine environment\n\n"
msg += textwrap.dedent("""
Please re-run this command with one of the following options:
* Provide an environment name via --name or -n
* Re-run this command inside an activated conda environment.""").lstrip()
# TODO Add json support
error_and_exit(msg, json=False)
args.name = name
else:
name = args.name
prefix = get_prefix(args)
env = from_environment(
name, prefix, no_builds=args.no_builds, ignore_channels=args.ignore_channels
)
if args.override_channels:
env.remove_channels()
if args.channel is not None:
env.add_channels(args.channel)
if args.file is None:
print(env.to_yaml())
else:
fp = open(args.file, "wb")
env.to_yaml(stream=fp)
|
def execute(args, parser):
if not args.name:
# Note, this is a hack fofr get_prefix that assumes argparse results
# TODO Refactor common.get_prefix
name = os.environ.get("CONDA_DEFAULT_ENV", False)
if not name:
msg = "Unable to determine environment\n\n"
msg += textwrap.dedent("""
Please re-run this command with one of the following options:
* Provide an environment name via --name or -n
* Re-run this command inside an activated conda environment.""").lstrip()
# TODO Add json support
error_and_exit(msg, json=False)
args.name = name
else:
name = args.name
prefix = get_prefix(args)
env = from_environment(
name, prefix, no_builds=args.no_builds, ignore_channels=args.ignore_prefix
)
if args.override_channels:
env.remove_channels()
if args.channel is not None:
env.add_channels(args.channel)
if args.file is None:
print(env.to_yaml())
else:
fp = open(args.file, "wb")
env.to_yaml(stream=fp)
|
https://github.com/conda/conda/issues/3253
|
n unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.2.1
conda is private : False
conda-env version : 2.5.2
conda-build version : 1.21.11+0.g5b44ab3.dirty
python version : 2.7.12.final.0
requests version : 2.10.0
root environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7 (writable)
default environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs/anabase
envs directories : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs
package cache : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/pkgs
channel URLs : file:///reg/g/psdm/sw/conda/channels/system-rhel7
file:///reg/g/psdm/sw/conda/channels/psana-rhel7
file:///reg/g/psdm/sw/conda/channels/external-rhel7
defaults
scikit-beam
file:///reg/g/psdm/sw/conda/channels/testing-rhel7
config file : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/.condarc
offline mode : False
`$ /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/bin/conda-env export`
Traceback (most recent call last):
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/exceptions.py", line 403, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda_env/cli/main_export.py", line 93, in execute
ignore_channels=args.ignore_prefix)
AttributeError: 'Namespace' object has no attribute 'ignore_prefix'
../manage/config/environment-anabase-1.0.0.yml (END)
|
AttributeError
|
def from_environment(name, prefix, no_builds=False, ignore_channels=False):
"""
Get environment object from prefix
Args:
name: The name of environment
prefix: The path of prefix
no_builds: Whether has build requirement
ignore_channels: whether ingore_channels
Returns: Environment obejct
"""
installed = install.linked(prefix, ignore_channels=ignore_channels)
conda_pkgs = copy(installed)
# json=True hides the output, data is added to installed
add_pip_installed(prefix, installed, json=True)
pip_pkgs = sorted(installed - conda_pkgs)
if no_builds:
dependencies = ["=".join(a.rsplit("-", 2)[0:2]) for a in sorted(conda_pkgs)]
else:
dependencies = ["=".join(a.rsplit("-", 2)) for a in sorted(conda_pkgs)]
if len(pip_pkgs) > 0:
dependencies.append(
{"pip": ["==".join(a.rsplit("-", 2)[:2]) for a in pip_pkgs]}
)
# conda uses ruamel_yaml which returns a ruamel_yaml.comments.CommentedSeq
# this doesn't dump correctly using pyyaml
channels = context.channels
return Environment(
name=name, dependencies=dependencies, channels=channels, prefix=prefix
)
|
def from_environment(name, prefix, no_builds=False, ignore_channels=False):
installed = install.linked(prefix, ignore_channels=ignore_channels)
conda_pkgs = copy(installed)
# json=True hides the output, data is added to installed
add_pip_installed(prefix, installed, json=True)
pip_pkgs = sorted(installed - conda_pkgs)
if no_builds:
dependencies = ["=".join(a.rsplit("-", 2)[0:2]) for a in sorted(conda_pkgs)]
else:
dependencies = ["=".join(a.rsplit("-", 2)) for a in sorted(conda_pkgs)]
if len(pip_pkgs) > 0:
dependencies.append(
{"pip": ["==".join(a.rsplit("-", 2)[:2]) for a in pip_pkgs]}
)
# conda uses ruamel_yaml which returns a ruamel_yaml.comments.CommentedSeq
# this doesn't dump correctly using pyyaml
channels = context.channels
return Environment(
name=name, dependencies=dependencies, channels=channels, prefix=prefix
)
|
https://github.com/conda/conda/issues/3253
|
n unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.2.1
conda is private : False
conda-env version : 2.5.2
conda-build version : 1.21.11+0.g5b44ab3.dirty
python version : 2.7.12.final.0
requests version : 2.10.0
root environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7 (writable)
default environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs/anabase
envs directories : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs
package cache : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/pkgs
channel URLs : file:///reg/g/psdm/sw/conda/channels/system-rhel7
file:///reg/g/psdm/sw/conda/channels/psana-rhel7
file:///reg/g/psdm/sw/conda/channels/external-rhel7
defaults
scikit-beam
file:///reg/g/psdm/sw/conda/channels/testing-rhel7
config file : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/.condarc
offline mode : False
`$ /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/bin/conda-env export`
Traceback (most recent call last):
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/exceptions.py", line 403, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda_env/cli/main_export.py", line 93, in execute
ignore_channels=args.ignore_prefix)
AttributeError: 'Namespace' object has no attribute 'ignore_prefix'
../manage/config/environment-anabase-1.0.0.yml (END)
|
AttributeError
|
def install(prefix, specs, args, env, prune=False):
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
new_specs = []
channel_urls = set()
for elem in specs:
if "::" in elem:
channel_urls.add(elem.split("::")[0])
new_specs.append(elem.split("::")[-1])
else:
new_specs.append(elem)
specs = new_specs
channel_urls = list(channel_urls)
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
index = get_index(
channel_urls=channel_urls
+ [chan for chan in env.channels if chan != "nodefaults"],
prepend="nodefaults" not in env.channels,
)
actions = plan.install_actions(prefix, index, specs, prune=prune)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError("Already locked: %s" % text_type(e))
else:
raise CondaRuntimeError("RuntimeError: %s" % e)
except SystemExit as e:
raise CondaSystemExit("Exiting", e)
|
def install(prefix, specs, args, env, prune=False):
# TODO: support all various ways this happens
# Including 'nodefaults' in the channels list disables the defaults
index = get_index(
channel_urls=[chan for chan in env.channels if chan != "nodefaults"],
prepend="nodefaults" not in env.channels,
)
actions = plan.install_actions(prefix, index, specs, prune=prune)
with common.json_progress_bars(json=args.json and not args.quiet):
try:
plan.execute_actions(actions, index, verbose=not args.quiet)
except RuntimeError as e:
if len(e.args) > 0 and "LOCKERROR" in e.args[0]:
raise LockError("Already locked: %s" % text_type(e))
else:
raise CondaRuntimeError("RuntimeError: %s" % e)
except SystemExit as e:
raise CondaSystemExit("Exiting", e)
|
https://github.com/conda/conda/issues/3253
|
n unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.2.1
conda is private : False
conda-env version : 2.5.2
conda-build version : 1.21.11+0.g5b44ab3.dirty
python version : 2.7.12.final.0
requests version : 2.10.0
root environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7 (writable)
default environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs/anabase
envs directories : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs
package cache : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/pkgs
channel URLs : file:///reg/g/psdm/sw/conda/channels/system-rhel7
file:///reg/g/psdm/sw/conda/channels/psana-rhel7
file:///reg/g/psdm/sw/conda/channels/external-rhel7
defaults
scikit-beam
file:///reg/g/psdm/sw/conda/channels/testing-rhel7
config file : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/.condarc
offline mode : False
`$ /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/bin/conda-env export`
Traceback (most recent call last):
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/exceptions.py", line 403, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda_env/cli/main_export.py", line 93, in execute
ignore_channels=args.ignore_prefix)
AttributeError: 'Namespace' object has no attribute 'ignore_prefix'
../manage/config/environment-anabase-1.0.0.yml (END)
|
AttributeError
|
def add_pip_installed(prefix, installed_pkgs, json=None, output=True):
# Defer to json for backwards compatibility
if type(json) is bool:
output = not json
# TODO Refactor so installed is a real list of objects/dicts
# instead of strings allowing for direct comparison
# split :: to get rid of channel info
conda_names = {d.rsplit("-", 2)[0].split("::")[-1] for d in installed_pkgs}
for pip_pkg in installed(prefix, output=output):
if pip_pkg["name"] in conda_names and not "path" in pip_pkg:
continue
installed_pkgs.add(str(pip_pkg))
|
def add_pip_installed(prefix, installed_pkgs, json=None, output=True):
# Defer to json for backwards compatibility
if type(json) is bool:
output = not json
# TODO Refactor so installed is a real list of objects/dicts
# instead of strings allowing for direct comparison
conda_names = {d.rsplit("-", 2)[0] for d in installed_pkgs}
for pip_pkg in installed(prefix, output=output):
if pip_pkg["name"] in conda_names and not "path" in pip_pkg:
continue
installed_pkgs.add(str(pip_pkg))
|
https://github.com/conda/conda/issues/3253
|
n unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.2.1
conda is private : False
conda-env version : 2.5.2
conda-build version : 1.21.11+0.g5b44ab3.dirty
python version : 2.7.12.final.0
requests version : 2.10.0
root environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7 (writable)
default environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs/anabase
envs directories : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs
package cache : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/pkgs
channel URLs : file:///reg/g/psdm/sw/conda/channels/system-rhel7
file:///reg/g/psdm/sw/conda/channels/psana-rhel7
file:///reg/g/psdm/sw/conda/channels/external-rhel7
defaults
scikit-beam
file:///reg/g/psdm/sw/conda/channels/testing-rhel7
config file : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/.condarc
offline mode : False
`$ /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/bin/conda-env export`
Traceback (most recent call last):
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/exceptions.py", line 403, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda_env/cli/main_export.py", line 93, in execute
ignore_channels=args.ignore_prefix)
AttributeError: 'Namespace' object has no attribute 'ignore_prefix'
../manage/config/environment-anabase-1.0.0.yml (END)
|
AttributeError
|
def execute(args, parser):
prefix = context.prefix_w_legacy_search
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
if args.revisions:
from conda.history import History
h = History(prefix)
if isfile(h.path):
if not args.json:
h.print_log()
else:
stdout_json(h.object_log())
else:
raise CondaFileNotFoundError(h.path, "No revision log found: %s\n" % h.path)
return
if args.explicit:
print_explicit(prefix, args.md5)
return
if args.canonical:
format = "canonical"
elif args.export:
print_explicit(prefix, args.md5)
return
else:
format = "human"
if args.json:
format = "canonical"
exitcode = print_packages(
prefix,
regex,
format,
piplist=args.pip,
json=args.json,
show_channel_urls=args.show_channel_urls,
)
return exitcode
|
def execute(args, parser):
prefix = context.prefix_w_legacy_search
regex = args.regex
if args.full_name:
regex = r"^%s$" % regex
if args.revisions:
from conda.history import History
h = History(prefix)
if isfile(h.path):
if not args.json:
h.print_log()
else:
stdout_json(h.object_log())
else:
raise CondaFileNotFoundError(h.path, "No revision log found: %s\n" % h.path)
return
if args.explicit:
print_explicit(prefix, args.md5)
return
if args.canonical:
format = "canonical"
elif args.export:
format = "export"
else:
format = "human"
if args.json:
format = "canonical"
exitcode = print_packages(
prefix,
regex,
format,
piplist=args.pip,
json=args.json,
show_channel_urls=args.show_channel_urls,
)
return exitcode
|
https://github.com/conda/conda/issues/3253
|
n unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.2.1
conda is private : False
conda-env version : 2.5.2
conda-build version : 1.21.11+0.g5b44ab3.dirty
python version : 2.7.12.final.0
requests version : 2.10.0
root environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7 (writable)
default environment : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs/anabase
envs directories : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/envs
package cache : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/pkgs
channel URLs : file:///reg/g/psdm/sw/conda/channels/system-rhel7
file:///reg/g/psdm/sw/conda/channels/psana-rhel7
file:///reg/g/psdm/sw/conda/channels/external-rhel7
defaults
scikit-beam
file:///reg/g/psdm/sw/conda/channels/testing-rhel7
config file : /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/.condarc
offline mode : False
`$ /reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/bin/conda-env export`
Traceback (most recent call last):
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda/exceptions.py", line 403, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/reg/g/psdm/sw/conda/inst/miniconda2-dev-rhel7/lib/python2.7/site-packages/conda_env/cli/main_export.py", line 93, in execute
ignore_channels=args.ignore_prefix)
AttributeError: 'Namespace' object has no attribute 'ignore_prefix'
../manage/config/environment-anabase-1.0.0.yml (END)
|
AttributeError
|
def explicit(
specs, prefix, verbose=False, force_extract=True, index_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
actions["op_order"] = (
RM_FETCHED,
FETCH,
RM_EXTRACTED,
EXTRACT,
UNLINK,
LINK,
SYMLINK_CONDA,
)
linked = {name_dist(dist): dist for dist in install_linked(prefix)}
index_args = index_args or {}
index = index or {}
verifies = []
channels = set()
for spec in specs:
if spec == "@EXPLICIT":
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit("Could not parse explicit URL: %s" % spec)
url_p, fn, md5 = m.group("url_p"), m.group("fn"), m.group("md5")
if not is_url(url_p):
if url_p is None:
url_p = curdir
elif not isdir(url_p):
sys.exit("Error: file not found: %s" % join(url_p, fn))
url_p = utils_url_path(url_p).rstrip("/")
url = "{0}/{1}".format(url_p, fn)
# is_local: if the tarball is stored locally (file://)
# is_cache: if the tarball is sitting in our cache
is_local = url.startswith("file://")
prefix = cached_url(url) if is_local else None
is_cache = prefix is not None
if is_cache:
# Channel information from the cache
schannel = "defaults" if prefix == "" else prefix[:-2]
else:
# Channel information from the URL
channel, schannel = url_channel(url)
prefix = "" if schannel == "defaults" else schannel + "::"
fn = prefix + fn
dist = fn[:-8]
# Add explicit file to index so we'll be sure to see it later
if is_local:
index[fn] = {"fn": dist2filename(fn), "url": url, "md5": md5}
verifies.append((fn, md5))
pkg_path = is_fetched(dist)
dir_path = is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
# Also remove explicit tarballs from cache, unless the path *is* to the cache
if (
pkg_path
and not is_cache
and (is_local or md5 and md5_file(pkg_path) != md5)
):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
if not is_local:
if fn not in index or index[fn].get("not_fetched"):
channels.add(schannel)
verifies.append((dist + ".tar.bz2", md5))
actions[FETCH].append(dist)
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index_args = index_args or {}
index_args = index_args.copy()
index_args["prepend"] = False
index_args["channel_urls"] = list(channels)
index.update(get_index(**index_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and "md5" not in info:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if md5 and info["md5"] != md5:
sys.exit(
"MD5 mismatch for: %s\n spec: %s\n repo: %s"
% (fn, md5, info["md5"])
)
execute_actions(actions, index=index, verbose=verbose)
return actions
|
def explicit(
specs, prefix, verbose=False, force_extract=True, index_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
actions["op_order"] = (
RM_FETCHED,
FETCH,
RM_EXTRACTED,
EXTRACT,
UNLINK,
LINK,
SYMLINK_CONDA,
)
linked = {name_dist(dist): dist for dist in install_linked(prefix)}
index_args = index_args or {}
index = index or {}
verifies = []
channels = {}
for spec in specs:
if spec == "@EXPLICIT":
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit("Could not parse explicit URL: %s" % spec)
url_p, fn, md5 = m.group("url_p"), m.group("fn"), m.group("md5")
if not is_url(url_p):
if url_p is None:
url_p = curdir
elif not isdir(url_p):
sys.exit("Error: file not found: %s" % join(url_p, fn))
url_p = utils_url_path(url_p).rstrip("/")
url = "{0}/{1}".format(url_p, fn)
# is_local: if the tarball is stored locally (file://)
# is_cache: if the tarball is sitting in our cache
is_local = url.startswith("file://")
prefix = cached_url(url) if is_local else None
is_cache = prefix is not None
if is_cache:
# Channel information from the cache
schannel = "defaults" if prefix == "" else prefix[:-2]
else:
# Channel information from the URL
channel, schannel = url_channel(url)
prefix = "" if schannel == "defaults" else schannel + "::"
fn = prefix + fn
dist = fn[:-8]
# Add explicit file to index so we'll be sure to see it later
if is_local:
index[fn] = {"fn": dist2filename(fn), "url": url, "md5": md5}
verifies.append((fn, md5))
pkg_path = is_fetched(dist)
dir_path = is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
# Also remove explicit tarballs from cache, unless the path *is* to the cache
if (
pkg_path
and not is_cache
and (is_local or md5 and md5_file(pkg_path) != md5)
):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
if not is_local:
if fn not in index or index[fn].get("not_fetched"):
channels.add(channel)
verifies.append((dist + ".tar.bz2", md5))
actions[FETCH].append(dist)
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index_args = index_args or {}
index_args = index_args.copy()
index_args["prepend"] = False
index_args["channel_urls"] = channels
index.update(get_index(**index_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and "md5" not in info:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if md5 and info["md5"] != md5:
sys.exit(
"MD5 mismatch for: %s\n spec: %s\n repo: %s"
% (fn, md5, info["md5"])
)
execute_actions(actions, index=index, verbose=verbose)
return actions
|
https://github.com/conda/conda/issues/3060
|
Traceback (most recent call last):
File "/opt/miniconda/bin/conda", line 6, in <module>
sys.exit(main())
File "/opt/miniconda/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
exit_code = args_func(args, p)
File "/opt/miniconda/lib/python2.7/site-packages/conda/cli/main.py", line 130, in args_func
exit_code = args.func(args, p)
File "/opt/miniconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 58, in execute
install(args, parser, 'create')
File "/opt/miniconda/lib/python2.7/site-packages/conda/cli/install.py", line 223, in install
clone(args.clone, prefix, json=args.json, quiet=args.quiet, index_args=index_args)
File "/opt/miniconda/lib/python2.7/site-packages/conda/cli/install.py", line 88, in clone
index_args=index_args)
File "/opt/miniconda/lib/python2.7/site-packages/conda/misc.py", line 360, in clone_env
force_extract=False, index_args=index_args)
File "/opt/miniconda/lib/python2.7/site-packages/conda/misc.py", line 109, in explicit
channels.add(channel)
AttributeError: 'dict' object has no attribute 'add'
|
AttributeError
|
def explicit(
specs, prefix, verbose=False, force_extract=True, index_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
actions["op_order"] = (
RM_FETCHED,
FETCH,
RM_EXTRACTED,
EXTRACT,
UNLINK,
LINK,
SYMLINK_CONDA,
)
linked = {name_dist(dist): dist for dist in install_linked(prefix)}
index_args = index_args or {}
index = index or {}
verifies = []
channels = {}
for spec in specs:
if spec == "@EXPLICIT":
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit("Could not parse explicit URL: %s" % spec)
url_p, fn, md5 = m.group("url_p"), m.group("fn"), m.group("md5")
if not is_url(url_p):
if url_p is None:
url_p = curdir
elif not isdir(url_p):
sys.exit("Error: file not found: %s" % join(url_p, fn))
url_p = utils_url_path(url_p).rstrip("/")
url = "{0}/{1}".format(url_p, fn)
# is_local: if the tarball is stored locally (file://)
# is_cache: if the tarball is sitting in our cache
is_local = url.startswith("file://")
prefix = cached_url(url) if is_local else None
is_cache = prefix is not None
if is_cache:
# Channel information from the cache
schannel = "defaults" if prefix == "" else prefix[:-2]
else:
# Channel information from the URL
channel, schannel = url_channel(url)
prefix = "" if schannel == "defaults" else schannel + "::"
fn = prefix + fn
dist = fn[:-8]
# Add explicit file to index so we'll be sure to see it later
if is_local:
index[fn] = {"fn": dist2filename(fn), "url": url, "md5": md5}
verifies.append((fn, md5))
pkg_path = is_fetched(dist)
dir_path = is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
# Also remove explicit tarballs from cache, unless the path *is* to the cache
if (
pkg_path
and not is_cache
and (is_local or md5 and md5_file(pkg_path) != md5)
):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
if not is_local:
if fn not in index or index[fn].get("not_fetched"):
channels.add(channel)
verifies.append((dist + ".tar.bz2", md5))
actions[FETCH].append(dist)
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index_args = index_args or {}
index_args = index_args.copy()
index_args["prepend"] = False
index_args["channel_urls"] = channels
index.update(get_index(**index_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and "md5" not in info:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if md5 and info["md5"] != md5:
sys.exit(
"MD5 mismatch for: %s\n spec: %s\n repo: %s"
% (fn, md5, info["md5"])
)
execute_actions(actions, index=index, verbose=verbose)
return actions
|
def explicit(
specs, prefix, verbose=False, force_extract=True, index_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
actions["op_order"] = (
RM_FETCHED,
FETCH,
RM_EXTRACTED,
EXTRACT,
UNLINK,
LINK,
SYMLINK_CONDA,
)
linked = {name_dist(dist): dist for dist in install_linked(prefix)}
index_args = index_args or {}
index = index or {}
verifies = []
channels = {}
for spec in specs:
if spec == "@EXPLICIT":
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit("Could not parse explicit URL: %s" % spec)
url_p, fn, md5 = m.group("url_p"), m.group("fn"), m.group("md5")
if not is_url(url_p):
if url_p is None:
url_p = curdir
elif not isdir(url_p):
sys.exit("Error: file not found: %s" % join(url_p, fn))
url_p = utils_url_path(url_p).rstrip("/")
url = "{0}/{1}".format(url_p, fn)
# See if the URL refers to a package in our cache
prefix = pkg_path = dir_path = None
if url.startswith("file://"):
prefix = cached_url(url)
if prefix is not None:
schannel = "defaults" if prefix == "" else prefix[:-2]
is_file = False
# If not, determine the channel name from the URL
if prefix is None:
channel, schannel = url_channel(url)
is_file = schannel.startswith("file:") and schannel.endswith("/")
prefix = "" if schannel == "defaults" else schannel + "::"
fn = prefix + fn
dist = fn[:-8]
# Add explicit file to index so we'll see it later
if is_file:
index[fn] = {"fn": dist2filename(fn), "url": url, "md5": None}
pkg_path = is_fetched(dist)
dir_path = is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
# Also remove explicit tarballs from cache
if pkg_path and (is_file or md5 and md5_file(pkg_path) != md5):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
if not is_file:
if fn not in index or index[fn].get("not_fetched"):
channels[url_p + "/"] = (schannel, 0)
verifies.append((dist + ".tar.bz2", md5))
actions[FETCH].append(dist)
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index_args = index_args or {}
index_args = index_args.copy()
index_args["prepend"] = False
index_args["channel_urls"] = channels
index.update(get_index(**index_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and "md5" not in info:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if md5 and info["md5"] != md5:
sys.exit(
"MD5 mismatch for: %s\n spec: %s\n repo: %s"
% (fn, md5, info["md5"])
)
execute_actions(actions, index=index, verbose=verbose)
return actions
|
https://github.com/conda/conda/issues/2970
|
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/home/user/miniconda2/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/user/miniconda2/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
exit_code = args_func(args, p)
File "/home/user/miniconda2/lib/python2.7/site-packages/conda/cli/main.py", line 130, in args_func
exit_code = args.func(args, p)
File "/home/user/miniconda2/lib/python2.7/site-packages/conda/cli/main_create.py", line 57, in execute
install(args, parser, 'create')
File "/home/user/miniconda2/lib/python2.7/site-packages/conda/cli/install.py", line 203, in install
explicit(args.packages, prefix, verbose=not args.quiet)
File "/home/user/miniconda2/lib/python2.7/site-packages/conda/misc.py", line 126, in explicit
index.update(get_index(**index_args))
File "/home/user/miniconda2/lib/python2.7/site-packages/conda/api.py", line 22, in get_index
channel_urls = normalize_urls(channel_urls, platform, offline)
File "/home/user/miniconda2/lib/python2.7/site-packages/conda/config.py", line 250, in normalize_urls
url = urls[0]
KeyError: 0
|
KeyError
|
def __init__(self, path):
self.path = path
self.end = "-" + str(os.getpid())
self.lock_path = join(self.path, LOCKFN + self.end)
self.pattern = join(self.path, LOCKFN + "-*")
self.remove = True
|
def __init__(self, path, retries=10):
self.path = path
self.end = "-" + str(os.getpid())
self.lock_path = os.path.join(self.path, LOCKFN + self.end)
self.retries = retries
|
https://github.com/conda/conda/issues/2778
|
Traceback (most recent call last):
File "/opt/anaconda/bin/conda-env", line 6, in <module>
sys.exit(conda_env.cli.main.main())
File "/opt/anaconda/lib/python3.5/site-packages/conda_env/cli/main.py", line 68, in main
return args_func(args, parser)
File "/opt/anaconda/lib/python3.5/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/opt/anaconda/lib/python3.5/site-packages/conda_env/cli/main_create.py", line 105, in execute
installer.install(prefix, pkg_specs, args, env)
File "/opt/anaconda/lib/python3.5/site-packages/conda_env/installers/conda.py", line 20, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/opt/anaconda/lib/python3.5/site-packages/conda/plan.py", line 589, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/opt/anaconda/lib/python3.5/site-packages/conda/instructions.py", line 137, in execute_instructions
cmd(state, arg)
File "/opt/anaconda/lib/python3.5/site-packages/conda/instructions.py", line 80, in LINK_CMD
link(state['prefix'], dist, lt, index=state['index'], shortcuts=shortcuts)
File "/opt/anaconda/lib/python3.5/site-packages/conda/install.py", line 1059, in link
with Locked(prefix), Locked(pkgs_dir):
File "/opt/anaconda/lib/python3.5/site-packages/conda/lock.py", line 60, in __enter__
os.makedirs(self.lock_path)
File "/opt/anaconda/lib/python3.5/os.py", line 241, in makedirs
mkdir(name, mode)
PermissionError: [Errno 13] Permission denied: '/opt/anaconda/pkgs/.conda_lock-5633'
|
PermissionError
|
def __enter__(self):
retries = 10
# Keep the string "LOCKERROR" in this string so that external
# programs can look for it.
lockstr = """\
LOCKERROR: It looks like conda is already doing something.
The lock %s was found. Wait for it to finish before continuing.
If you are sure that conda is not running, remove it and try again.
You can also use: $ conda clean --lock\n"""
sleeptime = 1
files = None
while retries:
files = glob.glob(self.pattern)
if files and not files[0].endswith(self.end):
stdoutlog.info(lockstr % str(files))
stdoutlog.info("Sleeping for %s seconds\n" % sleeptime)
sleep(sleeptime)
sleeptime *= 2
retries -= 1
else:
break
else:
stdoutlog.error("Exceeded max retries, giving up")
raise RuntimeError(lockstr % str(files))
if not files:
try:
os.makedirs(self.lock_path)
except OSError:
pass
else: # PID lock already here --- someone else will remove it.
self.remove = False
|
def __enter__(self):
# Keep the string "LOCKERROR" in this string so that external
# programs can look for it.
lockstr = """\
LOCKERROR: It looks like conda is already doing something.
The lock %s was found. Wait for it to finish before continuing.
If you are sure that conda is not running, remove it and try again.
You can also use: $ conda clean --lock\n"""
sleeptime = 1
for _ in range(self.retries):
if os.path.isdir(self.lock_path):
stdoutlog.info(lockstr % self.lock_path)
stdoutlog.info("Sleeping for %s seconds\n" % sleeptime)
time.sleep(sleeptime)
sleeptime *= 2
else:
os.makedirs(self.lock_path)
return self
stdoutlog.error("Exceeded max retries, giving up")
raise LockError(lockstr % self.lock_path)
|
https://github.com/conda/conda/issues/2778
|
Traceback (most recent call last):
File "/opt/anaconda/bin/conda-env", line 6, in <module>
sys.exit(conda_env.cli.main.main())
File "/opt/anaconda/lib/python3.5/site-packages/conda_env/cli/main.py", line 68, in main
return args_func(args, parser)
File "/opt/anaconda/lib/python3.5/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/opt/anaconda/lib/python3.5/site-packages/conda_env/cli/main_create.py", line 105, in execute
installer.install(prefix, pkg_specs, args, env)
File "/opt/anaconda/lib/python3.5/site-packages/conda_env/installers/conda.py", line 20, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/opt/anaconda/lib/python3.5/site-packages/conda/plan.py", line 589, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/opt/anaconda/lib/python3.5/site-packages/conda/instructions.py", line 137, in execute_instructions
cmd(state, arg)
File "/opt/anaconda/lib/python3.5/site-packages/conda/instructions.py", line 80, in LINK_CMD
link(state['prefix'], dist, lt, index=state['index'], shortcuts=shortcuts)
File "/opt/anaconda/lib/python3.5/site-packages/conda/install.py", line 1059, in link
with Locked(prefix), Locked(pkgs_dir):
File "/opt/anaconda/lib/python3.5/site-packages/conda/lock.py", line 60, in __enter__
os.makedirs(self.lock_path)
File "/opt/anaconda/lib/python3.5/os.py", line 241, in makedirs
mkdir(name, mode)
PermissionError: [Errno 13] Permission denied: '/opt/anaconda/pkgs/.conda_lock-5633'
|
PermissionError
|
def __exit__(self, exc_type, exc_value, traceback):
if self.remove:
for path in self.lock_path, self.path:
try:
os.rmdir(path)
except OSError:
pass
|
def __exit__(self, exc_type, exc_value, traceback):
try:
os.rmdir(self.lock_path)
os.rmdir(self.path)
except OSError:
pass
|
https://github.com/conda/conda/issues/2778
|
Traceback (most recent call last):
File "/opt/anaconda/bin/conda-env", line 6, in <module>
sys.exit(conda_env.cli.main.main())
File "/opt/anaconda/lib/python3.5/site-packages/conda_env/cli/main.py", line 68, in main
return args_func(args, parser)
File "/opt/anaconda/lib/python3.5/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/opt/anaconda/lib/python3.5/site-packages/conda_env/cli/main_create.py", line 105, in execute
installer.install(prefix, pkg_specs, args, env)
File "/opt/anaconda/lib/python3.5/site-packages/conda_env/installers/conda.py", line 20, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/opt/anaconda/lib/python3.5/site-packages/conda/plan.py", line 589, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/opt/anaconda/lib/python3.5/site-packages/conda/instructions.py", line 137, in execute_instructions
cmd(state, arg)
File "/opt/anaconda/lib/python3.5/site-packages/conda/instructions.py", line 80, in LINK_CMD
link(state['prefix'], dist, lt, index=state['index'], shortcuts=shortcuts)
File "/opt/anaconda/lib/python3.5/site-packages/conda/install.py", line 1059, in link
with Locked(prefix), Locked(pkgs_dir):
File "/opt/anaconda/lib/python3.5/site-packages/conda/lock.py", line 60, in __enter__
os.makedirs(self.lock_path)
File "/opt/anaconda/lib/python3.5/os.py", line 241, in makedirs
mkdir(name, mode)
PermissionError: [Errno 13] Permission denied: '/opt/anaconda/pkgs/.conda_lock-5633'
|
PermissionError
|
def get_rc_urls():
if rc is None or rc.get("channels") is None:
return []
if "system" in rc["channels"]:
raise RuntimeError("system cannot be used in .condarc")
return rc["channels"]
|
def get_rc_urls():
if rc.get("channels") is None:
return []
if "system" in rc["channels"]:
raise RuntimeError("system cannot be used in .condarc")
return rc["channels"]
|
https://github.com/conda/conda/issues/2891
|
$ conda info
Traceback (most recent call last):
File "/Users/jenns/anaconda/bin/conda", line 6, in <module>
sys.exit(main())
File "/Users/jenns/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 61, in main
from conda.cli import conda_argparse
File "/Users/jenns/anaconda/lib/python2.7/site-packages/conda/cli/conda_argparse.py", line 15, in <module>
from .common import add_parser_help
File "/Users/jenns/anaconda/lib/python2.7/site-packages/conda/cli/common.py", line 12, in <module>
from ..config import (envs_dirs, default_prefix, platform, update_dependencies,
File "/Users/jenns/anaconda/lib/python2.7/site-packages/conda/config.py", line 331, in <module>
allowed_channels = get_allowed_channels()
File "/Users/jenns/anaconda/lib/python2.7/site-packages/conda/config.py", line 329, in get_allowed_channels
return normalize_urls(base_urls)
File "/Users/jenns/anaconda/lib/python2.7/site-packages/conda/config.py", line 253, in normalize_urls
urls = get_rc_urls() + urls
File "/Users/jenns/anaconda/lib/python2.7/site-packages/conda/config.py", line 197, in get_rc_urls
if rc.get('channels') is None:
AttributeError: 'NoneType' object has no attribute 'get'
|
AttributeError
|
def print_explicit(prefix, add_md5=False):
if not isdir(prefix):
error_and_exit("Error: environment does not exist: %s" % prefix)
print_export_header()
print("@EXPLICIT")
for meta in sorted(linked_data(prefix).values(), key=lambda x: x["name"]):
url = meta.get("url")
if not url or url.startswith("<unknown>"):
print("# no URL for: %s" % meta["fn"])
continue
md5 = meta.get("md5")
print(url + ("#%s" % md5 if add_md5 and md5 else ""))
|
def print_explicit(prefix, add_md5=False):
import json
if not isdir(prefix):
error_and_exit("Error: environment does not exist: %s" % prefix)
print_export_header()
print("@EXPLICIT")
meta_dir = join(prefix, "conda-meta")
for fn in sorted(os.listdir(meta_dir)):
if not fn.endswith(".json"):
continue
with open(join(meta_dir, fn)) as fi:
meta = json.load(fi)
url = meta.get("url")
def format_url():
return "%s%s-%s-%s.tar.bz2" % (
meta["channel"],
meta["name"],
meta["version"],
meta["build"],
)
# two cases in which we want to try to format the url:
# 1. There is no url key in the metadata
# 2. The url key in the metadata is referencing a file on the local
# machine
if not url:
try:
url = format_url()
except KeyError:
# Declare failure :-(
print("# no URL for: %s" % fn[:-5])
continue
if url.startswith("file"):
try:
url = format_url()
except KeyError:
# declare failure and allow the url to be the file from which it was
# originally installed
continue
md5 = meta.get("md5")
print(url + ("#%s" % md5 if add_md5 and md5 else ""))
|
https://github.com/conda/conda/issues/2781
|
[root@42d0710d45b6 /]# conda index /opt/packages/linux-64/
updating index in: /opt/packages/linux-64
[root@42d0710d45b6 /]# ls /opt/packages/linux-64/
numpy-1.11.0-py35_1.tar.bz2 repodata.json repodata.json.bz2
[root@42d0710d45b6 /]# conda install -c file:///opt/packages --yes numpy
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment /opt/conda:
The following packages will be downloaded:
package | build
---------------------------|-----------------
numpy-1.11.0 | py35_1 6.1 MB file:///opt/packages
The following NEW packages will be INSTALLED:
numpy: 1.11.0-py35_1 file:///opt/packages
Pruning fetched packages from the cache ...
Fetching packages ...
numpy-1.11.0-p 100% |#########################################################################################################| Time: 0:00:00 164.40 MB/s
Extracting packages ...
An unexpected error has occurred, please consider sending the | 0%
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/opt/conda/bin/conda", line 6, in <module>
sys.exit(main())
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main_install.py", line 69, in execute
install(args, parser, 'install')
File "/opt/conda/lib/python3.5/site-packages/conda/cli/install.py", line 407, in install
execute_actions(actions, index, verbose=not args.quiet)
File "/opt/conda/lib/python3.5/site-packages/conda/plan.py", line 589, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/opt/conda/lib/python3.5/site-packages/conda/instructions.py", line 137, in execute_instructions
cmd(state, arg)
File "/opt/conda/lib/python3.5/site-packages/conda/instructions.py", line 60, in EXTRACT_CMD
extract(arg)
File "/opt/conda/lib/python3.5/site-packages/conda/install.py", line 833, in extract
rec = package_cache()[dist]
KeyError: 'file:///opt/packages::numpy-1.11.0-py35_1'
|
KeyError
|
def url_channel(url):
parts = (url or "").rsplit("/", 2)
if len(parts) == 1:
return "<unknown>", "<unknown>"
if len(parts) == 2:
return parts[0], parts[0]
if url.startswith("file://") and parts[1] not in ("noarch", subdir):
# Explicit file-based URLs are denoted with a '/' in the schannel
channel = parts[0] + "/" + parts[1]
schannel = channel + "/"
else:
channel = parts[0]
schannel = canonical_channel_name(channel)
return channel, schannel
|
def url_channel(url):
if url is None:
return None, "<unknown>"
channel = url.rsplit("/", 2)[0]
schannel = canonical_channel_name(channel)
if url.startswith("file://") and schannel != "local":
channel = schannel = url.rsplit("/", 1)[0]
return channel, schannel
|
https://github.com/conda/conda/issues/2781
|
[root@42d0710d45b6 /]# conda index /opt/packages/linux-64/
updating index in: /opt/packages/linux-64
[root@42d0710d45b6 /]# ls /opt/packages/linux-64/
numpy-1.11.0-py35_1.tar.bz2 repodata.json repodata.json.bz2
[root@42d0710d45b6 /]# conda install -c file:///opt/packages --yes numpy
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment /opt/conda:
The following packages will be downloaded:
package | build
---------------------------|-----------------
numpy-1.11.0 | py35_1 6.1 MB file:///opt/packages
The following NEW packages will be INSTALLED:
numpy: 1.11.0-py35_1 file:///opt/packages
Pruning fetched packages from the cache ...
Fetching packages ...
numpy-1.11.0-p 100% |#########################################################################################################| Time: 0:00:00 164.40 MB/s
Extracting packages ...
An unexpected error has occurred, please consider sending the | 0%
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/opt/conda/bin/conda", line 6, in <module>
sys.exit(main())
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main_install.py", line 69, in execute
install(args, parser, 'install')
File "/opt/conda/lib/python3.5/site-packages/conda/cli/install.py", line 407, in install
execute_actions(actions, index, verbose=not args.quiet)
File "/opt/conda/lib/python3.5/site-packages/conda/plan.py", line 589, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/opt/conda/lib/python3.5/site-packages/conda/instructions.py", line 137, in execute_instructions
cmd(state, arg)
File "/opt/conda/lib/python3.5/site-packages/conda/instructions.py", line 60, in EXTRACT_CMD
extract(arg)
File "/opt/conda/lib/python3.5/site-packages/conda/install.py", line 833, in extract
rec = package_cache()[dist]
KeyError: 'file:///opt/packages::numpy-1.11.0-py35_1'
|
KeyError
|
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
meta_file = join(prefix, "conda-meta", dname + ".json")
if rec is None:
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get("url")
fn = rec.get("fn")
if not fn:
fn = rec["fn"] = url.rsplit("/", 1)[-1] if url else dname + ".tar.bz2"
if fn[:-8] != dname:
log.debug("Ignoring invalid package metadata file: %s" % meta_file)
return None
channel = rec.get("channel")
if channel:
channel = channel.rstrip("/")
if not url or (url.startswith("file:") and channel[0] != "<unknown>"):
url = rec["url"] = channel + "/" + fn
channel, schannel = url_channel(url)
rec["channel"] = channel
rec["schannel"] = schannel
rec["link"] = rec.get("link") or True
cprefix = "" if schannel == "defaults" else schannel + "::"
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
|
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
meta_file = join(prefix, "conda-meta", dname + ".json")
if rec is None:
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get("url")
if "fn" not in rec:
rec["fn"] = url.rsplit("/", 1)[-1] if url else dname + ".tar.bz2"
if not url and "channel" in rec:
url = rec["url"] = rec["channel"] + rec["fn"]
if rec["fn"][:-8] != dname:
log.debug("Ignoring invalid package metadata file: %s" % meta_file)
return None
channel, schannel = url_channel(url)
rec["channel"] = channel
rec["schannel"] = schannel
rec["link"] = rec.get("link") or True
cprefix = "" if schannel == "defaults" else schannel + "::"
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
|
https://github.com/conda/conda/issues/2781
|
[root@42d0710d45b6 /]# conda index /opt/packages/linux-64/
updating index in: /opt/packages/linux-64
[root@42d0710d45b6 /]# ls /opt/packages/linux-64/
numpy-1.11.0-py35_1.tar.bz2 repodata.json repodata.json.bz2
[root@42d0710d45b6 /]# conda install -c file:///opt/packages --yes numpy
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment /opt/conda:
The following packages will be downloaded:
package | build
---------------------------|-----------------
numpy-1.11.0 | py35_1 6.1 MB file:///opt/packages
The following NEW packages will be INSTALLED:
numpy: 1.11.0-py35_1 file:///opt/packages
Pruning fetched packages from the cache ...
Fetching packages ...
numpy-1.11.0-p 100% |#########################################################################################################| Time: 0:00:00 164.40 MB/s
Extracting packages ...
An unexpected error has occurred, please consider sending the | 0%
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/opt/conda/bin/conda", line 6, in <module>
sys.exit(main())
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main_install.py", line 69, in execute
install(args, parser, 'install')
File "/opt/conda/lib/python3.5/site-packages/conda/cli/install.py", line 407, in install
execute_actions(actions, index, verbose=not args.quiet)
File "/opt/conda/lib/python3.5/site-packages/conda/plan.py", line 589, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/opt/conda/lib/python3.5/site-packages/conda/instructions.py", line 137, in execute_instructions
cmd(state, arg)
File "/opt/conda/lib/python3.5/site-packages/conda/instructions.py", line 60, in EXTRACT_CMD
extract(arg)
File "/opt/conda/lib/python3.5/site-packages/conda/install.py", line 833, in extract
rec = package_cache()[dist]
KeyError: 'file:///opt/packages::numpy-1.11.0-py35_1'
|
KeyError
|
def explicit(
specs, prefix, verbose=False, force_extract=True, fetch_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
actions["op_order"] = RM_FETCHED, FETCH, RM_EXTRACTED, EXTRACT, UNLINK, LINK
linked = {name_dist(dist): dist for dist in install_linked(prefix)}
fetch_args = fetch_args or {}
index = index or {}
verifies = []
channels = {}
for spec in specs:
if spec == "@EXPLICIT":
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit("Could not parse explicit URL: %s" % spec)
url_p, fn, md5 = m.group("url_p"), m.group("fn"), m.group("md5")
if not is_url(url_p):
if url_p is None:
url_p = curdir
elif not isdir(url_p):
sys.exit("Error: file not found: %s" % join(url_p, fn))
url_p = utils_url_path(url_p).rstrip("/")
url = "{0}/{1}".format(url_p, fn)
# See if the URL refers to a package in our cache
prefix = pkg_path = dir_path = None
if url.startswith("file://"):
prefix = cached_url(url)
# If not, determine the channel name from the URL
if prefix is None:
channel, schannel = url_channel(url)
prefix = "" if schannel == "defaults" else schannel + "::"
fn = prefix + fn
dist = fn[:-8]
is_file = schannel.startswith("file:") and schannel.endswith("/")
# Add explicit file to index so we'll see it later
if is_file:
index[fn] = {"fn": dist2filename(fn), "url": url, "md5": None}
pkg_path = is_fetched(dist)
dir_path = is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
# Also remove explicit tarballs from cache
if pkg_path and (is_file or md5 and md5_file(pkg_path) != md5):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
if not is_file:
if fn not in index or index[fn].get("not_fetched"):
channels[url_p + "/"] = (schannel, 0)
verifies.append((dist + ".tar.bz2", md5))
actions[FETCH].append(dist)
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index.update(fetch_index(channels, **fetch_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and "md5" not in info:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if md5 and info["md5"] != md5:
sys.exit(
"MD5 mismatch for: %s\n spec: %s\n repo: %s"
% (fn, md5, info["md5"])
)
execute_actions(actions, index=index, verbose=verbose)
return actions
|
def explicit(
specs, prefix, verbose=False, force_extract=True, fetch_args=None, index=None
):
actions = defaultdict(list)
actions["PREFIX"] = prefix
actions["op_order"] = RM_FETCHED, FETCH, RM_EXTRACTED, EXTRACT, UNLINK, LINK
linked = {name_dist(dist): dist for dist in install_linked(prefix)}
fetch_args = fetch_args or {}
index = index or {}
verifies = []
channels = {}
for spec in specs:
if spec == "@EXPLICIT":
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit("Could not parse explicit URL: %s" % spec)
url_p, fn, md5 = m.group("url_p"), m.group("fn"), m.group("md5")
if not is_url(url_p):
if url_p is None:
url_p = curdir
elif not isdir(url_p):
sys.exit("Error: file not found: %s" % join(url_p, fn))
url_p = utils_url_path(url_p).rstrip("/")
url = "{0}/{1}".format(url_p, fn)
# See if the URL refers to a package in our cache
prefix = pkg_path = dir_path = None
if url.startswith("file://"):
prefix = cached_url(url)
# If not, determine the channel name from the URL
if prefix is None:
_, schannel = url_channel(url)
prefix = "" if schannel == "defaults" else schannel + "::"
fn = prefix + fn
dist = fn[:-8]
is_file = fn.startswith("file://")
# Add file to index so we'll see it later
if is_file:
index[fn] = {"fn": dist2filename(fn), "url": url, "md5": None}
pkg_path = is_fetched(dist)
dir_path = is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
# Also remove explicit tarballs from cache
if pkg_path and (is_file or md5 and md5_file(pkg_path) != md5):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
if not is_file:
if fn not in index or index[fn].get("not_fetched"):
channels[url_p + "/"] = (schannel, 0)
verifies.append((dist + ".tar.bz2", md5))
actions[FETCH].append(dist)
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index.update(fetch_index(channels, **fetch_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and "md5" not in info:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if md5 and info["md5"] != md5:
sys.exit(
"MD5 mismatch for: %s\n spec: %s\n repo: %s"
% (fn, md5, info["md5"])
)
execute_actions(actions, index=index, verbose=verbose)
return actions
|
https://github.com/conda/conda/issues/2781
|
[root@42d0710d45b6 /]# conda index /opt/packages/linux-64/
updating index in: /opt/packages/linux-64
[root@42d0710d45b6 /]# ls /opt/packages/linux-64/
numpy-1.11.0-py35_1.tar.bz2 repodata.json repodata.json.bz2
[root@42d0710d45b6 /]# conda install -c file:///opt/packages --yes numpy
Fetching package metadata .........
Solving package specifications: ..........
Package plan for installation in environment /opt/conda:
The following packages will be downloaded:
package | build
---------------------------|-----------------
numpy-1.11.0 | py35_1 6.1 MB file:///opt/packages
The following NEW packages will be INSTALLED:
numpy: 1.11.0-py35_1 file:///opt/packages
Pruning fetched packages from the cache ...
Fetching packages ...
numpy-1.11.0-p 100% |#########################################################################################################| Time: 0:00:00 164.40 MB/s
Extracting packages ...
An unexpected error has occurred, please consider sending the | 0%
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/opt/conda/bin/conda", line 6, in <module>
sys.exit(main())
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/opt/conda/lib/python3.5/site-packages/conda/cli/main_install.py", line 69, in execute
install(args, parser, 'install')
File "/opt/conda/lib/python3.5/site-packages/conda/cli/install.py", line 407, in install
execute_actions(actions, index, verbose=not args.quiet)
File "/opt/conda/lib/python3.5/site-packages/conda/plan.py", line 589, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/opt/conda/lib/python3.5/site-packages/conda/instructions.py", line 137, in execute_instructions
cmd(state, arg)
File "/opt/conda/lib/python3.5/site-packages/conda/instructions.py", line 60, in EXTRACT_CMD
extract(arg)
File "/opt/conda/lib/python3.5/site-packages/conda/install.py", line 833, in extract
rec = package_cache()[dist]
KeyError: 'file:///opt/packages::numpy-1.11.0-py35_1'
|
KeyError
|
def add_unknown(index, priorities):
priorities = {p[0]: p[1] for p in itervalues(priorities)}
maxp = max(itervalues(priorities)) + 1 if priorities else 1
for dist, info in iteritems(package_cache()):
schannel, dname = dist2pair(dist)
fname = dname + ".tar.bz2"
fkey = dist + ".tar.bz2"
if fkey in index or not info["dirs"]:
continue
try:
with open(join(info["dirs"][0], "info", "index.json")) as fi:
meta = json.load(fi)
except IOError:
continue
if info["urls"]:
url = info["urls"][0]
elif meta.get("url"):
url = meta["url"]
elif meta.get("channel"):
url = meta["channel"].rstrip("/") + "/" + fname
else:
url = "<unknown>/" + fname
if url.rsplit("/", 1)[-1] != fname:
continue
channel, schannel2 = url_channel(url)
if schannel2 != schannel:
continue
priority = priorities.get(schannel, maxp)
if "link" in meta:
del meta["link"]
meta.update(
{
"fn": fname,
"url": url,
"channel": channel,
"schannel": schannel,
"priority": priority,
}
)
meta.setdefault("depends", [])
log.debug("adding cached pkg to index: %s" % fkey)
index[fkey] = meta
|
def add_unknown(index, priorities):
priorities = {p[0]: p[1] for p in itervalues(priorities)}
maxp = max(itervalues(priorities)) + 1 if priorities else 1
for dist, info in iteritems(package_cache()):
schannel, dname = dist2pair(dist)
fname = dname + ".tar.bz2"
fkey = dist + ".tar.bz2"
if fkey in index or not info["dirs"]:
continue
try:
with open(join(info["dirs"][0], "info", "index.json")) as fi:
meta = json.load(fi)
except IOError:
continue
if info["urls"]:
url = info["urls"][0]
elif "url" in meta:
url = meta["url"]
elif "channel" in meta:
url = meta["channel"].rstrip("/") + "/" + fname
else:
url = "<unknown>/" + fname
if url.rsplit("/", 1)[-1] != fname:
continue
channel, schannel2 = url_channel(url)
if schannel2 != schannel:
continue
priority = priorities.get(schannel, maxp)
if "link" in meta:
del meta["link"]
meta.update(
{
"fn": fname,
"url": url,
"channel": channel,
"schannel": schannel,
"priority": priority,
}
)
meta.setdefault("depends", [])
log.debug("adding cached pkg to index: %s" % fkey)
index[fkey] = meta
|
https://github.com/conda/conda/issues/2746
|
% conda create -p ~/anaclone --clone root
Source: /Users/ijstokes/anaconda
Destination: /Users/ijstokes/anaclone
The following packages cannot be cloned out of the root environment:
- conda-4.1.1-py27_0
- conda-build-1.20.3-py27_0
Packages: 332
Files: 16134
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
clude the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/Users/ijstokes/anaconda/envs/ana40py35/bin/conda", line 6, in <module>
sys.exit(main())
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 57, in execute
install(args, parser, 'create')
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 218, in install
'unknown': args.unknown})
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 87, in clone
fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 353, in clone_env
force_extract=False, fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 56, in explicit
m = url_pat.match(spec)
TypeError: expected string or buffer
|
TypeError
|
def create_meta(prefix, dist, info_dir, extra_info):
"""
Create the conda metadata, in a given prefix, for a given package.
"""
# read info/index.json first
with open(join(info_dir, "index.json")) as fi:
meta = json.load(fi)
# add extra info, add to our intenral cache
meta.update(extra_info)
if not meta.get("url"):
meta["url"] = read_url(dist)
# write into <env>/conda-meta/<dist>.json
meta_dir = join(prefix, "conda-meta")
if not isdir(meta_dir):
os.makedirs(meta_dir)
with open(join(meta_dir, dist2filename(dist, ".json")), "w") as fo:
json.dump(meta, fo, indent=2, sort_keys=True)
if prefix in linked_data_:
load_linked_data(prefix, dist, meta)
|
def create_meta(prefix, dist, info_dir, extra_info):
"""
Create the conda metadata, in a given prefix, for a given package.
"""
# read info/index.json first
with open(join(info_dir, "index.json")) as fi:
meta = json.load(fi)
# add extra info, add to our intenral cache
meta.update(extra_info)
if "url" not in meta:
meta["url"] = read_url(dist)
# write into <env>/conda-meta/<dist>.json
meta_dir = join(prefix, "conda-meta")
if not isdir(meta_dir):
os.makedirs(meta_dir)
with open(join(meta_dir, dist2filename(dist, ".json")), "w") as fo:
json.dump(meta, fo, indent=2, sort_keys=True)
if prefix in linked_data_:
load_linked_data(prefix, dist, meta)
|
https://github.com/conda/conda/issues/2746
|
% conda create -p ~/anaclone --clone root
Source: /Users/ijstokes/anaconda
Destination: /Users/ijstokes/anaclone
The following packages cannot be cloned out of the root environment:
- conda-4.1.1-py27_0
- conda-build-1.20.3-py27_0
Packages: 332
Files: 16134
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
clude the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/Users/ijstokes/anaconda/envs/ana40py35/bin/conda", line 6, in <module>
sys.exit(main())
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 57, in execute
install(args, parser, 'create')
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 218, in install
'unknown': args.unknown})
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 87, in clone
fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 353, in clone_env
force_extract=False, fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 56, in explicit
m = url_pat.match(spec)
TypeError: expected string or buffer
|
TypeError
|
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
meta_file = join(prefix, "conda-meta", dname + ".json")
if rec is None:
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get("url")
fn = rec.get("fn")
if not fn:
fn = rec["fn"] = url.rsplit("/", 1)[-1] if url else dname + ".tar.bz2"
if fn[:-8] != dname:
log.debug("Ignoring invalid package metadata file: %s" % meta_file)
return None
channel = rec.get("channel")
if channel:
channel = channel.rstrip("/")
if not url or (url.startswith("file:") and channel[0] != "<unknown>"):
url = rec["url"] = channel + "/" + fn
channel, schannel = url_channel(url)
rec["url"] = url
rec["channel"] = channel
rec["schannel"] = schannel
rec["link"] = rec.get("link") or True
cprefix = "" if schannel == "defaults" else schannel + "::"
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
|
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
meta_file = join(prefix, "conda-meta", dname + ".json")
if rec is None:
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get("url")
fn = rec.get("fn")
if not fn:
fn = rec["fn"] = url.rsplit("/", 1)[-1] if url else dname + ".tar.bz2"
if fn[:-8] != dname:
log.debug("Ignoring invalid package metadata file: %s" % meta_file)
return None
channel = rec.get("channel")
if channel:
channel = channel.rstrip("/")
if not url or (url.startswith("file:") and channel[0] != "<unknown>"):
url = rec["url"] = channel + "/" + fn
channel, schannel = url_channel(url)
rec["channel"] = channel
rec["schannel"] = schannel
rec["link"] = rec.get("link") or True
cprefix = "" if schannel == "defaults" else schannel + "::"
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
|
https://github.com/conda/conda/issues/2746
|
% conda create -p ~/anaclone --clone root
Source: /Users/ijstokes/anaconda
Destination: /Users/ijstokes/anaclone
The following packages cannot be cloned out of the root environment:
- conda-4.1.1-py27_0
- conda-build-1.20.3-py27_0
Packages: 332
Files: 16134
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
clude the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/Users/ijstokes/anaconda/envs/ana40py35/bin/conda", line 6, in <module>
sys.exit(main())
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 57, in execute
install(args, parser, 'create')
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 218, in install
'unknown': args.unknown})
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 87, in clone
fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 353, in clone_env
force_extract=False, fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 56, in explicit
m = url_pat.match(spec)
TypeError: expected string or buffer
|
TypeError
|
def clone_env(prefix1, prefix2, verbose=True, quiet=False, fetch_args=None):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
# Discard conda and any package that depends on it
drecs = linked_data(prefix1)
filter = {}
found = True
while found:
found = False
for dist, info in iteritems(drecs):
name = info["name"]
if name in filter:
continue
if name == "conda":
filter["conda"] = dist
found = True
break
for dep in info.get("depends", []):
if MatchSpec(dep).name in filter:
filter[name] = dist
found = True
if filter:
if not quiet:
print(
"The following packages cannot be cloned out of the root environment:"
)
for pkg in itervalues(filter):
print(" - " + pkg)
drecs = {
dist: info
for dist, info in iteritems(drecs)
if info["name"] not in filter
}
# Resolve URLs for packages that do not have URLs
r = None
index = {}
unknowns = [dist for dist, info in iteritems(drecs) if not info.get("url")]
notfound = []
if unknowns:
fetch_args = fetch_args or {}
index = get_index(**fetch_args)
r = Resolve(index, sort=True)
for dist in unknowns:
name = name_dist(dist)
fn = dist2filename(dist)
fkeys = [d for d in r.index.keys() if r.index[d]["fn"] == fn]
if fkeys:
del drecs[dist]
dist = sorted(fkeys, key=r.version_key, reverse=True)[0]
drecs[dist] = r.index[dist]
else:
notfound.append(fn)
if notfound:
what = "Package%s " % ("" if len(notfound) == 1 else "s")
notfound = "\n".join(" - " + fn for fn in notfound)
msg = "%s missing in current %s channels:%s" % (what, subdir, notfound)
raise RuntimeError(msg)
# Assemble the URL and channel list
urls = {}
for dist, info in iteritems(drecs):
fkey = dist + ".tar.bz2"
if fkey not in index:
info["not_fetched"] = True
index[fkey] = info
r = None
urls[dist] = info["url"]
if r is None:
r = Resolve(index)
dists = r.dependency_sort(urls.keys())
urls = [urls[d] for d in dists]
if verbose:
print("Packages: %d" % len(dists))
print("Files: %d" % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
os.unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
os.symlink(os.readlink(src), dst)
continue
try:
with open(src, "rb") as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode("utf-8")
s = s.replace(prefix1, prefix2)
data = s.encode("utf-8")
except UnicodeDecodeError: # data is binary
pass
with open(dst, "wb") as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = explicit(
urls,
prefix2,
verbose=not quiet,
index=index,
force_extract=False,
fetch_args=fetch_args,
)
return actions, untracked_files
|
def clone_env(prefix1, prefix2, verbose=True, quiet=False, fetch_args=None):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
# Discard conda and any package that depends on it
drecs = linked_data(prefix1)
filter = {}
found = True
while found:
found = False
for dist, info in iteritems(drecs):
name = info["name"]
if name in filter:
continue
if name == "conda":
filter["conda"] = dist
found = True
break
for dep in info.get("depends", []):
if MatchSpec(dep).name in filter:
filter[name] = dist
found = True
if filter:
if not quiet:
print(
"The following packages cannot be cloned out of the root environment:"
)
for pkg in itervalues(filter):
print(" - " + pkg)
drecs = {
dist: info
for dist, info in iteritems(drecs)
if info["name"] not in filter
}
# Resolve URLs for packages that do not have URLs
r = None
index = {}
unknowns = [dist for dist, info in iteritems(drecs) if "url" not in info]
notfound = []
if unknowns:
fetch_args = fetch_args or {}
index = get_index(**fetch_args)
r = Resolve(index, sort=True)
for dist in unknowns:
name = name_dist(dist)
fn = dist2filename(dist)
fkeys = [d for d in r.index.keys() if r.index[d]["fn"] == fn]
if fkeys:
del drecs[dist]
dist = sorted(fkeys, key=r.version_key, reverse=True)[0]
drecs[dist] = r.index[dist]
else:
notfound.append(fn)
if notfound:
what = "Package%s " % ("" if len(notfound) == 1 else "s")
notfound = "\n".join(" - " + fn for fn in notfound)
msg = "%s missing in current %s channels:%s" % (what, subdir, notfound)
raise RuntimeError(msg)
# Assemble the URL and channel list
urls = {}
for dist, info in iteritems(drecs):
fkey = dist + ".tar.bz2"
if fkey not in index:
info["not_fetched"] = True
index[fkey] = info
r = None
urls[dist] = info["url"]
if r is None:
r = Resolve(index)
dists = r.dependency_sort(urls.keys())
urls = [urls[d] for d in dists]
if verbose:
print("Packages: %d" % len(dists))
print("Files: %d" % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
os.unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
os.symlink(os.readlink(src), dst)
continue
try:
with open(src, "rb") as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode("utf-8")
s = s.replace(prefix1, prefix2)
data = s.encode("utf-8")
except UnicodeDecodeError: # data is binary
pass
with open(dst, "wb") as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = explicit(
urls,
prefix2,
verbose=not quiet,
index=index,
force_extract=False,
fetch_args=fetch_args,
)
return actions, untracked_files
|
https://github.com/conda/conda/issues/2746
|
% conda create -p ~/anaclone --clone root
Source: /Users/ijstokes/anaconda
Destination: /Users/ijstokes/anaclone
The following packages cannot be cloned out of the root environment:
- conda-4.1.1-py27_0
- conda-build-1.20.3-py27_0
Packages: 332
Files: 16134
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
clude the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/Users/ijstokes/anaconda/envs/ana40py35/bin/conda", line 6, in <module>
sys.exit(main())
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 57, in execute
install(args, parser, 'create')
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 218, in install
'unknown': args.unknown})
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 87, in clone
fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 353, in clone_env
force_extract=False, fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 56, in explicit
m = url_pat.match(spec)
TypeError: expected string or buffer
|
TypeError
|
def make_icon_url(info):
if info.get("channel") and info.get("icon"):
base_url = dirname(info["channel"])
icon_fn = info["icon"]
# icon_cache_path = join(pkgs_dir, 'cache', icon_fn)
# if isfile(icon_cache_path):
# return url_path(icon_cache_path)
return "%s/icons/%s" % (base_url, icon_fn)
return ""
|
def make_icon_url(info):
if "channel" in info and "icon" in info:
base_url = dirname(info["channel"])
icon_fn = info["icon"]
# icon_cache_path = join(pkgs_dir, 'cache', icon_fn)
# if isfile(icon_cache_path):
# return url_path(icon_cache_path)
return "%s/icons/%s" % (base_url, icon_fn)
return ""
|
https://github.com/conda/conda/issues/2746
|
% conda create -p ~/anaclone --clone root
Source: /Users/ijstokes/anaconda
Destination: /Users/ijstokes/anaclone
The following packages cannot be cloned out of the root environment:
- conda-4.1.1-py27_0
- conda-build-1.20.3-py27_0
Packages: 332
Files: 16134
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
clude the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/Users/ijstokes/anaconda/envs/ana40py35/bin/conda", line 6, in <module>
sys.exit(main())
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 57, in execute
install(args, parser, 'create')
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 218, in install
'unknown': args.unknown})
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 87, in clone
fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 353, in clone_env
force_extract=False, fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 56, in explicit
m = url_pat.match(spec)
TypeError: expected string or buffer
|
TypeError
|
def display_actions(actions, index, show_channel_urls=None):
if show_channel_urls is None:
show_channel_urls = config_show_channel_urls
def channel_str(rec):
if rec.get("schannel"):
return rec["schannel"]
if rec.get("url"):
return url_channel(rec["url"])[1]
if rec.get("channel"):
return canonical_channel_name(rec["channel"])
return "<unknown>"
def channel_filt(s):
if show_channel_urls is False:
return ""
if show_channel_urls is None and s == "defaults":
return ""
return s
if actions.get(inst.FETCH):
print("\nThe following packages will be downloaded:\n")
disp_lst = []
for dist in actions[inst.FETCH]:
info = index[dist + ".tar.bz2"]
extra = "%15s" % human_bytes(info["size"])
schannel = channel_filt(channel_str(info))
if schannel:
extra += " " + schannel
disp_lst.append((dist, extra))
print_dists(disp_lst)
if index and len(actions[inst.FETCH]) > 1:
num_bytes = sum(
index[dist + ".tar.bz2"]["size"] for dist in actions[inst.FETCH]
)
print(" " * 4 + "-" * 60)
print(" " * 43 + "Total: %14s" % human_bytes(num_bytes))
# package -> [oldver-oldbuild, newver-newbuild]
packages = defaultdict(lambda: list(("", "")))
features = defaultdict(lambda: list(("", "")))
channels = defaultdict(lambda: list(("", "")))
records = defaultdict(lambda: list((None, None)))
linktypes = {}
for arg in actions.get(inst.LINK, []):
dist, lt, shortcuts = inst.split_linkarg(arg)
fkey = dist + ".tar.bz2"
rec = index[fkey]
pkg = rec["name"]
channels[pkg][1] = channel_str(rec)
packages[pkg][1] = rec["version"] + "-" + rec["build"]
records[pkg][1] = Package(fkey, rec)
linktypes[pkg] = lt
features[pkg][1] = rec.get("features", "")
for arg in actions.get(inst.UNLINK, []):
dist, lt, shortcuts = inst.split_linkarg(arg)
fkey = dist + ".tar.bz2"
rec = index.get(fkey)
if rec is None:
pkg, ver, build, schannel = dist2quad(dist)
rec = dict(
name=pkg,
version=ver,
build=build,
channel=None,
schannel="<unknown>",
build_number=int(build) if build.isdigit() else 0,
)
pkg = rec["name"]
channels[pkg][0] = channel_str(rec)
packages[pkg][0] = rec["version"] + "-" + rec["build"]
records[pkg][0] = Package(fkey, rec)
features[pkg][0] = rec.get("features", "")
# Put a minimum length here---. .--For the :
# v v
new = {p for p in packages if not packages[p][0]}
removed = {p for p in packages if not packages[p][1]}
# New packages are actually listed in the left-hand column,
# so let's move them over there
for pkg in new:
for var in (packages, features, channels, records):
var[pkg] = var[pkg][::-1]
if packages:
maxpkg = max(len(p) for p in packages) + 1
maxoldver = max(len(p[0]) for p in packages.values())
maxnewver = max(len(p[1]) for p in packages.values())
maxoldfeatures = max(len(p[0]) for p in features.values())
maxnewfeatures = max(len(p[1]) for p in features.values())
maxoldchannels = max(len(channel_filt(p[0])) for p in channels.values())
maxnewchannels = max(len(channel_filt(p[1])) for p in channels.values())
updated = set()
downgraded = set()
channeled = set()
oldfmt = {}
newfmt = {}
for pkg in packages:
# That's right. I'm using old-style string formatting to generate a
# string with new-style string formatting.
oldfmt[pkg] = "{pkg:<%s} {vers[0]:<%s}" % (maxpkg, maxoldver)
if maxoldchannels:
oldfmt[pkg] += " {channels[0]:<%s}" % maxoldchannels
if features[pkg][0]:
oldfmt[pkg] += " [{features[0]:<%s}]" % maxoldfeatures
lt = linktypes.get(pkg, LINK_HARD)
lt = "" if lt == LINK_HARD else (" (%s)" % link_name_map[lt])
if pkg in removed or pkg in new:
oldfmt[pkg] += lt
continue
newfmt[pkg] = "{vers[1]:<%s}" % maxnewver
if maxnewchannels:
newfmt[pkg] += " {channels[1]:<%s}" % maxnewchannels
if features[pkg][1]:
newfmt[pkg] += " [{features[1]:<%s}]" % maxnewfeatures
newfmt[pkg] += lt
P0 = records[pkg][0]
P1 = records[pkg][1]
pri0 = P0.priority
pri1 = P1.priority
if pri0 is None or pri1 is None:
pri0 = pri1 = 1
try:
if str(P1.version) == "custom":
newver = str(P0.version) != "custom"
oldver = not newver
else:
# <= here means that unchanged packages will be put in updated
newver = P0.norm_version < P1.norm_version
oldver = P0.norm_version > P1.norm_version
except TypeError:
newver = P0.version < P1.version
oldver = P0.version > P1.version
oldbld = P0.build_number > P1.build_number
newbld = P0.build_number < P1.build_number
if channel_priority and pri1 < pri0 and (oldver or not newver and not newbld):
channeled.add(pkg)
elif newver:
updated.add(pkg)
elif pri1 < pri0 and (oldver or not newver and oldbld):
channeled.add(pkg)
elif oldver:
downgraded.add(pkg)
elif not oldbld:
updated.add(pkg)
else:
downgraded.add(pkg)
arrow = " --> "
lead = " " * 4
def format(s, pkg):
chans = [channel_filt(c) for c in channels[pkg]]
return lead + s.format(
pkg=pkg + ":", vers=packages[pkg], channels=chans, features=features[pkg]
)
if new:
print("\nThe following NEW packages will be INSTALLED:\n")
for pkg in sorted(new):
# New packages have been moved to the "old" column for display
print(format(oldfmt[pkg], pkg))
if removed:
print("\nThe following packages will be REMOVED:\n")
for pkg in sorted(removed):
print(format(oldfmt[pkg], pkg))
if updated:
print("\nThe following packages will be UPDATED:\n")
for pkg in sorted(updated):
print(format(oldfmt[pkg] + arrow + newfmt[pkg], pkg))
if channeled:
print(
"\nThe following packages will be SUPERCEDED by a higher-priority channel:\n"
)
for pkg in sorted(channeled):
print(format(oldfmt[pkg] + arrow + newfmt[pkg], pkg))
if downgraded:
print(
"\nThe following packages will be DOWNGRADED due to dependency conflicts:\n"
)
for pkg in sorted(downgraded):
print(format(oldfmt[pkg] + arrow + newfmt[pkg], pkg))
print()
|
def display_actions(actions, index, show_channel_urls=None):
if show_channel_urls is None:
show_channel_urls = config_show_channel_urls
def channel_str(rec):
if "schannel" in rec:
return rec["schannel"]
if "url" in rec:
return url_channel(rec["url"])[1]
if "channel" in rec:
return canonical_channel_name(rec["channel"])
return "<unknown>"
def channel_filt(s):
if show_channel_urls is False:
return ""
if show_channel_urls is None and s == "defaults":
return ""
return s
if actions.get(inst.FETCH):
print("\nThe following packages will be downloaded:\n")
disp_lst = []
for dist in actions[inst.FETCH]:
info = index[dist + ".tar.bz2"]
extra = "%15s" % human_bytes(info["size"])
schannel = channel_filt(channel_str(info))
if schannel:
extra += " " + schannel
disp_lst.append((dist, extra))
print_dists(disp_lst)
if index and len(actions[inst.FETCH]) > 1:
num_bytes = sum(
index[dist + ".tar.bz2"]["size"] for dist in actions[inst.FETCH]
)
print(" " * 4 + "-" * 60)
print(" " * 43 + "Total: %14s" % human_bytes(num_bytes))
# package -> [oldver-oldbuild, newver-newbuild]
packages = defaultdict(lambda: list(("", "")))
features = defaultdict(lambda: list(("", "")))
channels = defaultdict(lambda: list(("", "")))
records = defaultdict(lambda: list((None, None)))
linktypes = {}
for arg in actions.get(inst.LINK, []):
dist, lt, shortcuts = inst.split_linkarg(arg)
fkey = dist + ".tar.bz2"
rec = index[fkey]
pkg = rec["name"]
channels[pkg][1] = channel_str(rec)
packages[pkg][1] = rec["version"] + "-" + rec["build"]
records[pkg][1] = Package(fkey, rec)
linktypes[pkg] = lt
features[pkg][1] = rec.get("features", "")
for arg in actions.get(inst.UNLINK, []):
dist, lt, shortcuts = inst.split_linkarg(arg)
fkey = dist + ".tar.bz2"
rec = index.get(fkey)
if rec is None:
pkg, ver, build, schannel = dist2quad(dist)
rec = dict(
name=pkg,
version=ver,
build=build,
channel=None,
schannel="<unknown>",
build_number=int(build) if build.isdigit() else 0,
)
pkg = rec["name"]
channels[pkg][0] = channel_str(rec)
packages[pkg][0] = rec["version"] + "-" + rec["build"]
records[pkg][0] = Package(fkey, rec)
features[pkg][0] = rec.get("features", "")
# Put a minimum length here---. .--For the :
# v v
new = {p for p in packages if not packages[p][0]}
removed = {p for p in packages if not packages[p][1]}
# New packages are actually listed in the left-hand column,
# so let's move them over there
for pkg in new:
for var in (packages, features, channels, records):
var[pkg] = var[pkg][::-1]
if packages:
maxpkg = max(len(p) for p in packages) + 1
maxoldver = max(len(p[0]) for p in packages.values())
maxnewver = max(len(p[1]) for p in packages.values())
maxoldfeatures = max(len(p[0]) for p in features.values())
maxnewfeatures = max(len(p[1]) for p in features.values())
maxoldchannels = max(len(channel_filt(p[0])) for p in channels.values())
maxnewchannels = max(len(channel_filt(p[1])) for p in channels.values())
updated = set()
downgraded = set()
channeled = set()
oldfmt = {}
newfmt = {}
for pkg in packages:
# That's right. I'm using old-style string formatting to generate a
# string with new-style string formatting.
oldfmt[pkg] = "{pkg:<%s} {vers[0]:<%s}" % (maxpkg, maxoldver)
if maxoldchannels:
oldfmt[pkg] += " {channels[0]:<%s}" % maxoldchannels
if features[pkg][0]:
oldfmt[pkg] += " [{features[0]:<%s}]" % maxoldfeatures
lt = linktypes.get(pkg, LINK_HARD)
lt = "" if lt == LINK_HARD else (" (%s)" % link_name_map[lt])
if pkg in removed or pkg in new:
oldfmt[pkg] += lt
continue
newfmt[pkg] = "{vers[1]:<%s}" % maxnewver
if maxnewchannels:
newfmt[pkg] += " {channels[1]:<%s}" % maxnewchannels
if features[pkg][1]:
newfmt[pkg] += " [{features[1]:<%s}]" % maxnewfeatures
newfmt[pkg] += lt
P0 = records[pkg][0]
P1 = records[pkg][1]
pri0 = P0.priority
pri1 = P1.priority
if pri0 is None or pri1 is None:
pri0 = pri1 = 1
try:
if str(P1.version) == "custom":
newver = str(P0.version) != "custom"
oldver = not newver
else:
# <= here means that unchanged packages will be put in updated
newver = P0.norm_version < P1.norm_version
oldver = P0.norm_version > P1.norm_version
except TypeError:
newver = P0.version < P1.version
oldver = P0.version > P1.version
oldbld = P0.build_number > P1.build_number
newbld = P0.build_number < P1.build_number
if channel_priority and pri1 < pri0 and (oldver or not newver and not newbld):
channeled.add(pkg)
elif newver:
updated.add(pkg)
elif pri1 < pri0 and (oldver or not newver and oldbld):
channeled.add(pkg)
elif oldver:
downgraded.add(pkg)
elif not oldbld:
updated.add(pkg)
else:
downgraded.add(pkg)
arrow = " --> "
lead = " " * 4
def format(s, pkg):
chans = [channel_filt(c) for c in channels[pkg]]
return lead + s.format(
pkg=pkg + ":", vers=packages[pkg], channels=chans, features=features[pkg]
)
if new:
print("\nThe following NEW packages will be INSTALLED:\n")
for pkg in sorted(new):
# New packages have been moved to the "old" column for display
print(format(oldfmt[pkg], pkg))
if removed:
print("\nThe following packages will be REMOVED:\n")
for pkg in sorted(removed):
print(format(oldfmt[pkg], pkg))
if updated:
print("\nThe following packages will be UPDATED:\n")
for pkg in sorted(updated):
print(format(oldfmt[pkg] + arrow + newfmt[pkg], pkg))
if channeled:
print(
"\nThe following packages will be SUPERCEDED by a higher-priority channel:\n"
)
for pkg in sorted(channeled):
print(format(oldfmt[pkg] + arrow + newfmt[pkg], pkg))
if downgraded:
print(
"\nThe following packages will be DOWNGRADED due to dependency conflicts:\n"
)
for pkg in sorted(downgraded):
print(format(oldfmt[pkg] + arrow + newfmt[pkg], pkg))
print()
|
https://github.com/conda/conda/issues/2746
|
% conda create -p ~/anaclone --clone root
Source: /Users/ijstokes/anaconda
Destination: /Users/ijstokes/anaclone
The following packages cannot be cloned out of the root environment:
- conda-4.1.1-py27_0
- conda-build-1.20.3-py27_0
Packages: 332
Files: 16134
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
clude the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/Users/ijstokes/anaconda/envs/ana40py35/bin/conda", line 6, in <module>
sys.exit(main())
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 57, in execute
install(args, parser, 'create')
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 218, in install
'unknown': args.unknown})
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 87, in clone
fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 353, in clone_env
force_extract=False, fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 56, in explicit
m = url_pat.match(spec)
TypeError: expected string or buffer
|
TypeError
|
def channel_str(rec):
if rec.get("schannel"):
return rec["schannel"]
if rec.get("url"):
return url_channel(rec["url"])[1]
if rec.get("channel"):
return canonical_channel_name(rec["channel"])
return "<unknown>"
|
def channel_str(rec):
if "schannel" in rec:
return rec["schannel"]
if "url" in rec:
return url_channel(rec["url"])[1]
if "channel" in rec:
return canonical_channel_name(rec["channel"])
return "<unknown>"
|
https://github.com/conda/conda/issues/2746
|
% conda create -p ~/anaclone --clone root
Source: /Users/ijstokes/anaconda
Destination: /Users/ijstokes/anaclone
The following packages cannot be cloned out of the root environment:
- conda-4.1.1-py27_0
- conda-build-1.20.3-py27_0
Packages: 332
Files: 16134
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
clude the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/Users/ijstokes/anaconda/envs/ana40py35/bin/conda", line 6, in <module>
sys.exit(main())
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 57, in execute
install(args, parser, 'create')
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 218, in install
'unknown': args.unknown})
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 87, in clone
fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 353, in clone_env
force_extract=False, fetch_args=fetch_args)
File "/Users/ijstokes/anaconda/lib/python2.7/site-packages/conda/misc.py", line 56, in explicit
m = url_pat.match(spec)
TypeError: expected string or buffer
|
TypeError
|
def is_url(url):
if url:
p = urlparse.urlparse(url)
return p.netloc != "" or p.scheme == "file"
|
def is_url(url):
return url and urlparse.urlparse(url).scheme != ""
|
https://github.com/conda/conda/issues/2642
|
________________________ IntegrationTests.test_python3 ________________________
Traceback (most recent call last):
File "C:\projects\conda\tests\test_create.py", line 146, in test_python3
run_command(Commands.INSTALL, prefix, flask_tar_file)
File "C:\projects\conda\tests\test_create.py", line 104, in run_command
args.func(args, p)
File "C:\projects\conda\conda\cli\main_install.py", line 62, in execute
install(args, parser, 'install')
File "C:\projects\conda\conda\cli\install.py", line 195, in install
explicit(args.packages, prefix, verbose=not args.quiet)
File "C:\projects\conda\conda\misc.py", line 111, in explicit
index.update(fetch_index(channels, **fetch_args))
File "C:\projects\conda\conda\fetch.py", line 266, in fetch_index
for url in iterkeys(channel_urls)]
File "C:\projects\conda\conda\fetch.py", line 67, in func
res = f(*args, **kwargs)
File "C:\projects\conda\conda\fetch.py", line 149, in fetch_repodata
raise RuntimeError(msg)
RuntimeError: Could not find URL: file:///C|/projects/conda/
---------------------------- Captured stdout call -----------------------------
|
RuntimeError
|
def update_prefix(path, new_prefix, placeholder=prefix_placeholder, mode="text"):
if on_win:
# force all prefix replacements to forward slashes to simplify need to escape backslashes
# replace with unix-style path separators
new_prefix = new_prefix.replace("\\", "/")
path = os.path.realpath(path)
with open(path, "rb") as fi:
original_data = data = fi.read()
data = replace_prefix(mode, data, placeholder, new_prefix)
if not on_win:
data = replace_long_shebang(mode, data)
if data == original_data:
return
st = os.lstat(path)
# Remove file before rewriting to avoid destroying hard-linked cache
os.remove(path)
with exp_backoff_fn(open, path, "wb") as fo:
fo.write(data)
os.chmod(path, stat.S_IMODE(st.st_mode))
|
def update_prefix(path, new_prefix, placeholder=prefix_placeholder, mode="text"):
if on_win:
# force all prefix replacements to forward slashes to simplify need to escape backslashes
# replace with unix-style path separators
new_prefix = new_prefix.replace("\\", "/")
path = os.path.realpath(path)
with open(path, "rb") as fi:
original_data = data = fi.read()
data = replace_prefix(mode, data, placeholder, new_prefix)
if not on_win:
data = replace_long_shebang(mode, data)
if data == original_data:
return
st = os.lstat(path)
# Remove file before rewriting to avoid destroying hard-linked cache
os.remove(path)
with open(path, "wb") as fo:
fo.write(data)
os.chmod(path, stat.S_IMODE(st.st_mode))
|
https://github.com/conda/conda/issues/2697
|
prepending C:\\Users\\Alessandro\\Anaconda3 and C:\\Users\\Alessandro\\Anaconda3
\\Library\\mingw-w64\\bin and C:\\Users\\Alessandro\\Anaconda3\\Library\\usr\\bi
n and C:\\Users\\Alessandro\\Anaconda3\\Library\\bin and C:\\Users\\Alessandro\\
Anaconda3\\Scripts to PATH
((Anaconda3)) C:\Users\Alessandro>conda info
Current conda install:
platform : win-64
conda version : 4.1.0
conda-build version : 1.20.0
python version : 3.5.1.final.0
requests version : 2.9.1
root environment : C:\Users\Alessandro\Anaconda3 (writable)
default environment : C:\Users\Alessandro\Anaconda3
envs directories : C:\Users\Alessandro\Anaconda3\envs
package cache : C:\Users\Alessandro\Anaconda3\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64/
https://repo.continuum.io/pkgs/free/noarch/
https://repo.continuum.io/pkgs/pro/win-64/
https://repo.continuum.io/pkgs/pro/noarch/
config file : None
is foreign system : False
((Anaconda3)) C:\Users\Alessandro>conda create --name new_env_3 biopython
Fetching package metadata .......
Solving package specifications .............
Package plan for installation in environment C:\Users\Alessandro\Anaconda3\envs\
new_env_3:
The following NEW packages will be INSTALLED:
biopython: 1.67-np111py35_0
mkl: 11.3.3-1
numpy: 1.11.0-py35_1
pip: 8.1.2-py35_0
python: 3.5.1-4
setuptools: 23.0.0-py35_0
vs2015_runtime: 14.00.23026.0-0
wheel: 0.29.0-py35_0
Proceed ([y]/n)? y
Extracting packages ...
An unexpected error has occurred, please consider sending the | 0%
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "C:\Users\Alessandro\Anaconda3\Scripts\conda-script.py", line 5, in <modu
le>
sys.exit(main())
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\main.py", line
120, in main
args_func(args, p)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\main.py", line
127, in args_func
args.func(args, p)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\main_create.py
", line 57, in execute
install(args, parser, 'create')
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\install.py", l
ine 407, in install
execute_actions(actions, index, verbose=not args.quiet)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\plan.py", line 566
, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\instructions.py",
line 137, in execute_instructions
cmd(state, arg)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\instructions.py",
line 60, in EXTRACT_CMD
extract(arg)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\install.py", line
821, in extract
os.rename(temp_path, path)
PermissionError: [WinError 5] Accesso negato: 'C:\\Users\\Alessandro\\Anaconda3\
\pkgs\\vs2015_runtime-14.00.23026.0-0.tmp' -> 'C:\\Users\\Alessandro\\Anaconda3\
\pkgs\\vs2015_runtime-14.00.23026.0-0'
((Anaconda3)) C:\Users\Alessandro>
|
PermissionError
|
def extract(dist):
"""
Extract a package, i.e. make a package available for linkage. We assume
that the compressed package is located in the packages directory.
"""
rec = package_cache()[dist]
url = rec["urls"][0]
fname = rec["files"][0]
assert url and fname
pkgs_dir = dirname(fname)
with Locked(pkgs_dir):
path = fname[:-8]
temp_path = path + ".tmp"
rm_rf(temp_path)
with tarfile.open(fname) as t:
t.extractall(path=temp_path)
rm_rf(path)
exp_backoff_fn(os.rename, temp_path, path)
if sys.platform.startswith("linux") and os.getuid() == 0:
# When extracting as root, tarfile will by restore ownership
# of extracted files. However, we want root to be the owner
# (our implementation of --no-same-owner).
for root, dirs, files in os.walk(path):
for fn in files:
p = join(root, fn)
os.lchown(p, 0, 0)
add_cached_package(pkgs_dir, url, overwrite=True)
|
def extract(dist):
"""
Extract a package, i.e. make a package available for linkage. We assume
that the compressed package is located in the packages directory.
"""
rec = package_cache()[dist]
url = rec["urls"][0]
fname = rec["files"][0]
assert url and fname
pkgs_dir = dirname(fname)
with Locked(pkgs_dir):
path = fname[:-8]
temp_path = path + ".tmp"
rm_rf(temp_path)
with tarfile.open(fname) as t:
t.extractall(path=temp_path)
rm_rf(path)
os.rename(temp_path, path)
if sys.platform.startswith("linux") and os.getuid() == 0:
# When extracting as root, tarfile will by restore ownership
# of extracted files. However, we want root to be the owner
# (our implementation of --no-same-owner).
for root, dirs, files in os.walk(path):
for fn in files:
p = join(root, fn)
os.lchown(p, 0, 0)
add_cached_package(pkgs_dir, url, overwrite=True)
|
https://github.com/conda/conda/issues/2697
|
prepending C:\\Users\\Alessandro\\Anaconda3 and C:\\Users\\Alessandro\\Anaconda3
\\Library\\mingw-w64\\bin and C:\\Users\\Alessandro\\Anaconda3\\Library\\usr\\bi
n and C:\\Users\\Alessandro\\Anaconda3\\Library\\bin and C:\\Users\\Alessandro\\
Anaconda3\\Scripts to PATH
((Anaconda3)) C:\Users\Alessandro>conda info
Current conda install:
platform : win-64
conda version : 4.1.0
conda-build version : 1.20.0
python version : 3.5.1.final.0
requests version : 2.9.1
root environment : C:\Users\Alessandro\Anaconda3 (writable)
default environment : C:\Users\Alessandro\Anaconda3
envs directories : C:\Users\Alessandro\Anaconda3\envs
package cache : C:\Users\Alessandro\Anaconda3\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64/
https://repo.continuum.io/pkgs/free/noarch/
https://repo.continuum.io/pkgs/pro/win-64/
https://repo.continuum.io/pkgs/pro/noarch/
config file : None
is foreign system : False
((Anaconda3)) C:\Users\Alessandro>conda create --name new_env_3 biopython
Fetching package metadata .......
Solving package specifications .............
Package plan for installation in environment C:\Users\Alessandro\Anaconda3\envs\
new_env_3:
The following NEW packages will be INSTALLED:
biopython: 1.67-np111py35_0
mkl: 11.3.3-1
numpy: 1.11.0-py35_1
pip: 8.1.2-py35_0
python: 3.5.1-4
setuptools: 23.0.0-py35_0
vs2015_runtime: 14.00.23026.0-0
wheel: 0.29.0-py35_0
Proceed ([y]/n)? y
Extracting packages ...
An unexpected error has occurred, please consider sending the | 0%
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "C:\Users\Alessandro\Anaconda3\Scripts\conda-script.py", line 5, in <modu
le>
sys.exit(main())
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\main.py", line
120, in main
args_func(args, p)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\main.py", line
127, in args_func
args.func(args, p)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\main_create.py
", line 57, in execute
install(args, parser, 'create')
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\install.py", l
ine 407, in install
execute_actions(actions, index, verbose=not args.quiet)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\plan.py", line 566
, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\instructions.py",
line 137, in execute_instructions
cmd(state, arg)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\instructions.py",
line 60, in EXTRACT_CMD
extract(arg)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\install.py", line
821, in extract
os.rename(temp_path, path)
PermissionError: [WinError 5] Accesso negato: 'C:\\Users\\Alessandro\\Anaconda3\
\pkgs\\vs2015_runtime-14.00.23026.0-0.tmp' -> 'C:\\Users\\Alessandro\\Anaconda3\
\pkgs\\vs2015_runtime-14.00.23026.0-0'
((Anaconda3)) C:\Users\Alessandro>
|
PermissionError
|
def main():
from optparse import OptionParser
p = OptionParser(description="conda link tool used by installer")
p.add_option(
"--file",
action="store",
help="path of a file containing distributions to link, "
"by default all packages extracted in the cache are "
"linked",
)
p.add_option(
"--prefix",
action="store",
default=sys.prefix,
help="prefix (defaults to %default)",
)
p.add_option("-v", "--verbose", action="store_true")
if sys.platform == "win32":
p.add_option(
"--shortcuts", action="store_true", help="Install start menu shortcuts"
)
opts, args = p.parse_args()
if args:
p.error("no arguments expected")
logging.basicConfig()
prefix = opts.prefix
pkgs_dir = join(prefix, "pkgs")
pkgs_dirs[0] = [pkgs_dir]
if opts.verbose:
print("prefix: %r" % prefix)
if opts.file:
idists = list(yield_lines(join(prefix, opts.file)))
else:
idists = sorted(extracted())
linktype = (
LINK_HARD
if idists and try_hard_link(pkgs_dir, prefix, idists[0])
else LINK_COPY
)
if opts.verbose:
print("linktype: %s" % link_name_map[linktype])
for dist in idists:
if opts.verbose:
print("linking: %s" % dist)
link(prefix, dist, linktype, opts.shortcuts)
messages(prefix)
for dist in duplicates_to_remove(linked(prefix), idists):
meta_path = join(prefix, "conda-meta", dist + ".json")
print("WARNING: unlinking: %s" % meta_path)
try:
os.rename(meta_path, meta_path + ".bak")
except OSError:
rm_rf(meta_path)
|
def main():
from optparse import OptionParser
p = OptionParser(description="conda link tool used by installer")
p.add_option(
"--file",
action="store",
help="path of a file containing distributions to link, "
"by default all packages extracted in the cache are "
"linked",
)
p.add_option(
"--prefix",
action="store",
default=sys.prefix,
help="prefix (defaults to %default)",
)
p.add_option("-v", "--verbose", action="store_true")
if sys.platform == "win32":
p.add_argument(
"--shortcuts", action="store_true", help="Install start menu shortcuts"
)
opts, args = p.parse_args()
if args:
p.error("no arguments expected")
logging.basicConfig()
prefix = opts.prefix
pkgs_dir = join(prefix, "pkgs")
pkgs_dirs[0] = [pkgs_dir]
if opts.verbose:
print("prefix: %r" % prefix)
if opts.file:
idists = list(yield_lines(join(prefix, opts.file)))
else:
idists = sorted(extracted())
linktype = (
LINK_HARD
if idists and try_hard_link(pkgs_dir, prefix, idists[0])
else LINK_COPY
)
if opts.verbose:
print("linktype: %s" % link_name_map[linktype])
for dist in idists:
if opts.verbose:
print("linking: %s" % dist)
link(prefix, dist, linktype, opts.shortcuts)
messages(prefix)
for dist in duplicates_to_remove(linked(prefix), idists):
meta_path = join(prefix, "conda-meta", dist + ".json")
print("WARNING: unlinking: %s" % meta_path)
try:
os.rename(meta_path, meta_path + ".bak")
except OSError:
rm_rf(meta_path)
|
https://github.com/conda/conda/issues/2697
|
prepending C:\\Users\\Alessandro\\Anaconda3 and C:\\Users\\Alessandro\\Anaconda3
\\Library\\mingw-w64\\bin and C:\\Users\\Alessandro\\Anaconda3\\Library\\usr\\bi
n and C:\\Users\\Alessandro\\Anaconda3\\Library\\bin and C:\\Users\\Alessandro\\
Anaconda3\\Scripts to PATH
((Anaconda3)) C:\Users\Alessandro>conda info
Current conda install:
platform : win-64
conda version : 4.1.0
conda-build version : 1.20.0
python version : 3.5.1.final.0
requests version : 2.9.1
root environment : C:\Users\Alessandro\Anaconda3 (writable)
default environment : C:\Users\Alessandro\Anaconda3
envs directories : C:\Users\Alessandro\Anaconda3\envs
package cache : C:\Users\Alessandro\Anaconda3\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64/
https://repo.continuum.io/pkgs/free/noarch/
https://repo.continuum.io/pkgs/pro/win-64/
https://repo.continuum.io/pkgs/pro/noarch/
config file : None
is foreign system : False
((Anaconda3)) C:\Users\Alessandro>conda create --name new_env_3 biopython
Fetching package metadata .......
Solving package specifications .............
Package plan for installation in environment C:\Users\Alessandro\Anaconda3\envs\
new_env_3:
The following NEW packages will be INSTALLED:
biopython: 1.67-np111py35_0
mkl: 11.3.3-1
numpy: 1.11.0-py35_1
pip: 8.1.2-py35_0
python: 3.5.1-4
setuptools: 23.0.0-py35_0
vs2015_runtime: 14.00.23026.0-0
wheel: 0.29.0-py35_0
Proceed ([y]/n)? y
Extracting packages ...
An unexpected error has occurred, please consider sending the | 0%
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "C:\Users\Alessandro\Anaconda3\Scripts\conda-script.py", line 5, in <modu
le>
sys.exit(main())
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\main.py", line
120, in main
args_func(args, p)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\main.py", line
127, in args_func
args.func(args, p)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\main_create.py
", line 57, in execute
install(args, parser, 'create')
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\cli\install.py", l
ine 407, in install
execute_actions(actions, index, verbose=not args.quiet)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\plan.py", line 566
, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\instructions.py",
line 137, in execute_instructions
cmd(state, arg)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\instructions.py",
line 60, in EXTRACT_CMD
extract(arg)
File "C:\Users\Alessandro\Anaconda3\lib\site-packages\conda\install.py", line
821, in extract
os.rename(temp_path, path)
PermissionError: [WinError 5] Accesso negato: 'C:\\Users\\Alessandro\\Anaconda3\
\pkgs\\vs2015_runtime-14.00.23026.0-0.tmp' -> 'C:\\Users\\Alessandro\\Anaconda3\
\pkgs\\vs2015_runtime-14.00.23026.0-0'
((Anaconda3)) C:\Users\Alessandro>
|
PermissionError
|
def ensure_linked_actions(
dists, prefix, index=None, force=False, always_copy=False, shortcuts=False
):
actions = defaultdict(list)
actions[inst.PREFIX] = prefix
actions["op_order"] = (
inst.RM_FETCHED,
inst.FETCH,
inst.RM_EXTRACTED,
inst.EXTRACT,
inst.UNLINK,
inst.LINK,
)
for dist in dists:
fetched_in = is_fetched(dist)
extracted_in = is_extracted(dist)
if fetched_in and index is not None:
# Test the MD5, and possibly re-fetch
fn = dist + ".tar.bz2"
try:
if md5_file(fetched_in) != index[fn]["md5"]:
# RM_FETCHED now removes the extracted data too
actions[inst.RM_FETCHED].append(dist)
# Re-fetch, re-extract, re-link
fetched_in = extracted_in = None
force = True
except KeyError:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if not force and is_linked(prefix, dist):
continue
if extracted_in and force:
# Always re-extract in the force case
actions[inst.RM_EXTRACTED].append(dist)
extracted_in = None
# Otherwise we need to extract, and possibly fetch
if not extracted_in and not fetched_in:
# If there is a cache conflict, clean it up
fetched_in, conflict = find_new_location(dist)
fetched_in = join(fetched_in, dist2filename(dist))
if conflict is not None:
actions[inst.RM_FETCHED].append(conflict)
actions[inst.FETCH].append(dist)
if not extracted_in:
actions[inst.EXTRACT].append(dist)
fetched_dist = extracted_in or fetched_in[:-8]
fetched_dir = dirname(fetched_dist)
try:
# Determine what kind of linking is necessary
if not extracted_in:
# If not already extracted, create some dummy
# data to test with
rm_rf(fetched_dist)
ppath = join(fetched_dist, "info")
os.makedirs(ppath)
index_json = join(ppath, "index.json")
with open(index_json, "w"):
pass
if config_always_copy or always_copy:
lt = LINK_COPY
elif try_hard_link(fetched_dir, prefix, dist):
lt = LINK_HARD
elif allow_softlinks and sys.platform != "win32":
lt = LINK_SOFT
else:
lt = LINK_COPY
actions[inst.LINK].append("%s %d %s" % (dist, lt, shortcuts))
except (OSError, IOError):
actions[inst.LINK].append("%s %d %s" % (dist, LINK_COPY, shortcuts))
finally:
if not extracted_in:
# Remove the dummy data
try:
rm_rf(fetched_dist)
except (OSError, IOError):
pass
return actions
|
def ensure_linked_actions(
dists, prefix, index=None, force=False, always_copy=False, shortcuts=False
):
actions = defaultdict(list)
actions[inst.PREFIX] = prefix
actions["op_order"] = (
inst.RM_FETCHED,
inst.FETCH,
inst.RM_EXTRACTED,
inst.EXTRACT,
inst.UNLINK,
inst.LINK,
)
for dist in dists:
fetched_in = is_fetched(dist)
extracted_in = is_extracted(dist)
if fetched_in and index is not None:
# Test the MD5, and possibly re-fetch
fn = dist + ".tar.bz2"
try:
if md5_file(fetched_in) != index[fn]["md5"]:
# RM_FETCHED now removes the extracted data too
actions[inst.RM_FETCHED].append(dist)
# Re-fetch, re-extract, re-link
fetched_in = extracted_in = None
force = True
except KeyError:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if not force and is_linked(prefix, dist):
continue
if extracted_in and force:
# Always re-extract in the force case
actions[inst.RM_EXTRACTED].append(dist)
extracted_in = None
# Otherwise we need to extract, and possibly fetch
if not extracted_in and not fetched_in:
# If there is a cache conflict, clean it up
fetched_in, conflict = find_new_location(dist)
fetched_in = join(fetched_in, dist2filename(dist))
if conflict is not None:
actions[inst.RM_FETCHED].append(conflict)
actions[inst.FETCH].append(dist)
if not extracted_in:
actions[inst.EXTRACT].append(dist)
fetched_dist = extracted_in or fetched_in[:-8]
fetched_dir = dirname(fetched_dist)
try:
# Determine what kind of linking is necessary
if not extracted_in:
# If not already extracted, create some dummy
# data to test with
rm_rf(fetched_dist)
ppath = join(fetched_dist, "info")
os.makedirs(ppath)
index_json = join(ppath, "index.json")
with open(index_json, "w"):
pass
if config_always_copy or always_copy:
lt = LINK_COPY
elif try_hard_link(fetched_dir, prefix, dist):
lt = LINK_HARD
elif allow_softlinks and sys.platform != "win32":
lt = LINK_SOFT
else:
lt = LINK_COPY
actions[inst.LINK].append("%s %d %s" % (dist, lt, shortcuts))
except (OSError, IOError):
actions[inst.LINK].append(dist, LINK_COPY, shortcuts)
finally:
if not extracted_in:
# Remove the dummy data
try:
rm_rf(fetched_dist)
except (OSError, IOError):
pass
return actions
|
https://github.com/conda/conda/issues/2710
|
[ebrown@AWS-SYD-AL-T2MIC-SWM-P-ANACONDA01 ~]$ conda create --name testenv python
Fetching package metadata .......
Solving package specifications .............
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report.
Traceback (most recent call last):
File "/anaconda/bin/conda", line 6, in <module>
sys.exit(main())
File "/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/anaconda/lib/python2.7/site-packages/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/anaconda/lib/python2.7/site-packages/conda/cli/main_create.py", line 57, in execute
install(args, parser, 'create')
File "/anaconda/lib/python2.7/site-packages/conda/cli/install.py", line 315, in install
shortcuts=shortcuts)
File "/anaconda/lib/python2.7/site-packages/conda/plan.py", line 461, in install_actions
shortcuts=shortcuts)
File "/anaconda/lib/python2.7/site-packages/conda/plan.py", line 333, in ensure_linked_actions
actions[inst.LINK].append(dist, LINK_COPY, shortcuts)
TypeError: append() takes exactly one argument (3 given)
|
TypeError
|
def get_packages(installed, regex):
pat = re.compile(regex, re.I) if regex else None
for dist in sorted(installed, key=lambda x: x.lower()):
name = name_dist(dist)
if pat and pat.search(name) is None:
continue
yield dist
|
def get_packages(installed, regex):
pat = re.compile(regex, re.I) if regex else None
for dist in sorted(installed, key=str.lower):
name = name_dist(dist)
if pat and pat.search(name) is None:
continue
yield dist
|
https://github.com/conda/conda/issues/2700
|
Traceback (most recent call last):
File "C:\Python\Scripts\conda-script.py", line 5, in <module>
sys.exit(main())
File "C:\Python\lib\site-packages\conda\cli\main.py", line 120, in main
args_func(args, p)
File "C:\Python\lib\site-packages\conda\cli\main.py", line 127, in args_func
args.func(args, p)
File "C:\Python\lib\site-packages\conda\cli\main_list.py", line 268, in execute
show_channel_urls=args.show_channel_urls)
File "C:\Python\lib\site-packages\conda\cli\main_list.py", line 178, in print_packages
installed.update(get_egg_info(prefix))
File "C:\Python\lib\site-packages\conda\egg_info.py", line 82, in get_egg_info
dist = parse_egg_info(path)
File "C:\Python\lib\site-packages\conda\egg_info.py", line 49, in parse_egg_info
for line in open(path):
File "C:\Python\lib\encodings\cp1252.py", line 39, in decode
raise Exception(msg) from exc
Exception: input = b'#!/bin/sh\r\nif [ `basename $0` = "setuptools-20.3-py3.5.egg" ]\r\nthen exec python3.5 -c "import sys, os; sys.path.insert(0, os.path.abspath(\'$0\')); from setuptools.command.easy_install import bootstrap; sys.exit(bootstrap())" "$@"\r\nelse\r\n echo $0 is not the correct name for this egg file.\r\n echo Please rename it back to setuptools-20.3-py3.5.egg and try again.\r\n exec false\r\nfi\r\nPK\x03\x04\x14\x00\x00\x00\x08\x00|]>H\\O\xbaEi\x00\x00\x00~\x00\x00\x00\x0f\x00\x00\x00easy_install.py-\xcc1\x0e\x83@\x0cD\xd1~Oa\xb9\x814\x1c \x12e\x8a\xb4\\`d\x91EYim#\xd6\x14\xb9=\x101\xd54\xef3\xf3\xb4\x1b\xc57\xd3K\xda\xefm-\xa4V\x9a]U\xec\xc3\xcc)\x95\x85\x00\x13\xcd\x00\x8d#u\x80J1\xa0{&:\xb7l\xae\xd4r\xeck\xb8\xd76\xdct\xc8g\x0e\xe5\xee\x15]}\x0b\xba\xe0\x1f]\xa7\x7f\xa4\x03PK\x03\x04\x14\x00\x00\x00\x08\x00P\x96qH\x93\x06\xd72\x03\x00\x00\x00\x01\x00\x00\x00\x1d\x00\x00\x00EGG-INFO/dependency_links.txt\xe3\x02\x00PK\x03\x04\x14\x00\x00\x00\x08\x00P\x96qH1\x8f\x97\x14\x84\x02\x00\x00\x13\x0b\x00\x00\x19\x00\x00\x00EGG-INFO/entry_points.txt\x95V\xcd\x8e\xdb \x10\xbe\xf3\x14\xfb\x02\x9bCW\xbd 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W@\x1am\xb9\xb8\x10l\xf1\xd3\x00\x00\xa0y`Ie3\xec\x01\x07\x0c\x04_\xca\x1d\x8c\x91\x85\xbb\xd8\x08T\x90\xdap\xb4\x068\x90V\xd5V+81W\xb3rHO\xc7\x19\xf4\xb0(M#\x83\x05=b\x0c\x81\xf2\xa8\xbdkV\x02\x0fL\xbetO\xd4\tMF0\xc0\xbe\xfc\xd7`\x7f\xfc\xcfF\xbfL\xa2_\xfe\xf0/A\xff\xf8\x9f\x8d>\xe1\xd9E\xff\xf2_3\xfb_\xfe\xb3\xd1\xbfL\xcf\xfe\xe5\xbf\x86\xf4\xbf\xfcgc\x9f&\xfd\xd5\xbff\xf2\x7f\xf6\xcf\x9e\xfcU\xcf\xe4\x97\x1b\x10\xa6\x96n\x0c\xd7\xe5\xae\xcb\xd7\x0cb\xa7\xd0\xe0\xcc\x02\x80\xb7\x9b.CD\xf6\x0b\\\x7f\xb5\x99\xd0\xa1\x00\xa7'
type(input) = <class 'bytes'>
errors = strict
type(errors) = <class 'str'>
decoding_table = ☺☻♥♦
♫☼►◄↕‼¶§▬↨↑↓→←∟↔▲▼ !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~⌂\u20ac\ufffe\u201aƒ\u201e\u2026\u2020\u2021\u02c6\u2030\u0160\u2039\u0152\ufffe\u017d\ufffe\ufffe\u2018\u2019\u201c\u201d\u2022\u2013\u2014\u02dc\u2122\u0161\u203a\u0153\ufffe\u017e\u0178 ¡¢£¤¥¦§¨©ª«¬®¯°±²³´µ¶·¸¹º»¼½¾¿ÀÁÂÃÄÅÆÇÈÉÊËÌÍÎÏÐÑÒÓÔÕÖ×ØÙÚÛÜÝÞßàáâãäåæçèéêëìíîïðñòóôõö÷øùúûüýþÿ
type(decoding_table) = <class 'str'>
|
Exception
|
def list_packages(
prefix, installed, regex=None, format="human", show_channel_urls=show_channel_urls
):
res = 1
result = []
for dist in get_packages(installed, regex):
res = 0
if format == "canonical":
result.append(dist)
continue
if format == "export":
result.append("=".join(dist2quad(dist)[:3]))
continue
try:
# Returns None if no meta-file found (e.g. pip install)
info = is_linked(prefix, dist)
features = set(info.get("features", "").split())
disp = "%(name)-25s %(version)-15s %(build)15s" % info
disp += " %s" % disp_features(features)
schannel = info.get("schannel")
if (
show_channel_urls
or show_channel_urls is None
and schannel != "defaults"
):
disp += " %s" % schannel
result.append(disp)
except (AttributeError, IOError, KeyError, ValueError) as e:
log.debug(str(e))
result.append("%-25s %-15s %15s" % dist2quad(dist)[:3])
return res, result
|
def list_packages(
prefix, installed, regex=None, format="human", show_channel_urls=show_channel_urls
):
res = 1
result = []
for dist in get_packages(installed, regex):
res = 0
if format == "canonical":
result.append(dist)
continue
if format == "export":
result.append("=".join(dist2quad(dist)[:3]))
continue
try:
# Returns None if no meta-file found (e.g. pip install)
info = is_linked(prefix, dist)
features = set(info.get("features", "").split())
disp = "%(name)-25s %(version)-15s %(build)15s" % info
disp += " %s" % disp_features(features)
schannel = info.get("schannel")
if (
show_channel_urls
or show_channel_urls is None
and schannel != "defaults"
):
disp += " %s" % schannel
result.append(disp)
except (AttributeError, IOError, KeyError, ValueError) as e:
log.debug(str(e))
result.append("%-25s %-15s %s" % dist2quad(dist)[:3])
return res, result
|
https://github.com/conda/conda/issues/2700
|
Traceback (most recent call last):
File "C:\Python\Scripts\conda-script.py", line 5, in <module>
sys.exit(main())
File "C:\Python\lib\site-packages\conda\cli\main.py", line 120, in main
args_func(args, p)
File "C:\Python\lib\site-packages\conda\cli\main.py", line 127, in args_func
args.func(args, p)
File "C:\Python\lib\site-packages\conda\cli\main_list.py", line 268, in execute
show_channel_urls=args.show_channel_urls)
File "C:\Python\lib\site-packages\conda\cli\main_list.py", line 178, in print_packages
installed.update(get_egg_info(prefix))
File "C:\Python\lib\site-packages\conda\egg_info.py", line 82, in get_egg_info
dist = parse_egg_info(path)
File "C:\Python\lib\site-packages\conda\egg_info.py", line 49, in parse_egg_info
for line in open(path):
File "C:\Python\lib\encodings\cp1252.py", line 39, in decode
raise Exception(msg) from exc
Exception: input = b'#!/bin/sh\r\nif [ `basename $0` = "setuptools-20.3-py3.5.egg" ]\r\nthen exec python3.5 -c "import sys, os; sys.path.insert(0, os.path.abspath(\'$0\')); from setuptools.command.easy_install import bootstrap; sys.exit(bootstrap())" "$@"\r\nelse\r\n echo $0 is not the correct name for this egg file.\r\n echo Please rename it back to setuptools-20.3-py3.5.egg and try again.\r\n exec false\r\nfi\r\nPK\x03\x04\x14\x00\x00\x00\x08\x00|]>H\\O\xbaEi\x00\x00\x00~\x00\x00\x00\x0f\x00\x00\x00easy_install.py-\xcc1\x0e\x83@\x0cD\xd1~Oa\xb9\x814\x1c 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W@\x1am\xb9\xb8\x10l\xf1\xd3\x00\x00\xa0y`Ie3\xec\x01\x07\x0c\x04_\xca\x1d\x8c\x91\x85\xbb\xd8\x08T\x90\xdap\xb4\x068\x90V\xd5V+81W\xb3rHO\xc7\x19\xf4\xb0(M#\x83\x05=b\x0c\x81\xf2\xa8\xbdkV\x02\x0fL\xbetO\xd4\tMF0\xc0\xbe\xfc\xd7`\x7f\xfc\xcfF\xbfL\xa2_\xfe\xf0/A\xff\xf8\x9f\x8d>\xe1\xd9E\xff\xf2_3\xfb_\xfe\xb3\xd1\xbfL\xcf\xfe\xe5\xbf\x86\xf4\xbf\xfcgc\x9f&\xfd\xd5\xbff\xf2\x7f\xf6\xcf\x9e\xfcU\xcf\xe4\x97\x1b\x10\xa6\x96n\x0c\xd7\xe5\xae\xcb\xd7\x0cb\xa7\xd0\xe0\xcc\x02\x80\xb7\x9b.CD\xf6\x0b\\\x7f\xb5\x99\xd0\xa1\x00\xa7'
type(input) = <class 'bytes'>
errors = strict
type(errors) = <class 'str'>
decoding_table = ☺☻♥♦
♫☼►◄↕‼¶§▬↨↑↓→←∟↔▲▼ !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~⌂\u20ac\ufffe\u201aƒ\u201e\u2026\u2020\u2021\u02c6\u2030\u0160\u2039\u0152\ufffe\u017d\ufffe\ufffe\u2018\u2019\u201c\u201d\u2022\u2013\u2014\u02dc\u2122\u0161\u203a\u0153\ufffe\u017e\u0178 ¡¢£¤¥¦§¨©ª«¬®¯°±²³´µ¶·¸¹º»¼½¾¿ÀÁÂÃÄÅÆÇÈÉÊËÌÍÎÏÐÑÒÓÔÕÖ×ØÙÚÛÜÝÞßàáâãäåæçèéêëìíîïðñòóôõö÷øùúûüýþÿ
type(decoding_table) = <class 'str'>
|
Exception
|
def parse_egg_info(path):
"""
Parse an .egg-info file and return its canonical distribution name
"""
info = {}
for line in open(path, encoding="utf-8"):
line = line.strip()
m = pat.match(line)
if m:
key = m.group(1).lower()
info[key] = m.group(2)
try:
return "%(name)s-%(version)s-<egg_info>" % info
except KeyError:
pass
return None
|
def parse_egg_info(path):
"""
Parse an .egg-info file and return its canonical distribution name
"""
info = {}
for line in open(path):
line = line.strip()
m = pat.match(line)
if m:
key = m.group(1).lower()
info[key] = m.group(2)
try:
return "%(name)s-%(version)s-<egg_info>" % info
except KeyError:
pass
return None
|
https://github.com/conda/conda/issues/2700
|
Traceback (most recent call last):
File "C:\Python\Scripts\conda-script.py", line 5, in <module>
sys.exit(main())
File "C:\Python\lib\site-packages\conda\cli\main.py", line 120, in main
args_func(args, p)
File "C:\Python\lib\site-packages\conda\cli\main.py", line 127, in args_func
args.func(args, p)
File "C:\Python\lib\site-packages\conda\cli\main_list.py", line 268, in execute
show_channel_urls=args.show_channel_urls)
File "C:\Python\lib\site-packages\conda\cli\main_list.py", line 178, in print_packages
installed.update(get_egg_info(prefix))
File "C:\Python\lib\site-packages\conda\egg_info.py", line 82, in get_egg_info
dist = parse_egg_info(path)
File "C:\Python\lib\site-packages\conda\egg_info.py", line 49, in parse_egg_info
for line in open(path):
File "C:\Python\lib\encodings\cp1252.py", line 39, in decode
raise Exception(msg) from exc
Exception: input = b'#!/bin/sh\r\nif [ `basename $0` = "setuptools-20.3-py3.5.egg" ]\r\nthen exec python3.5 -c "import sys, os; sys.path.insert(0, os.path.abspath(\'$0\')); from setuptools.command.easy_install import bootstrap; sys.exit(bootstrap())" "$@"\r\nelse\r\n echo $0 is not the correct name for this egg file.\r\n echo Please rename it back to setuptools-20.3-py3.5.egg and try again.\r\n exec false\r\nfi\r\nPK\x03\x04\x14\x00\x00\x00\x08\x00|]>H\\O\xbaEi\x00\x00\x00~\x00\x00\x00\x0f\x00\x00\x00easy_install.py-\xcc1\x0e\x83@\x0cD\xd1~Oa\xb9\x814\x1c 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W@\x1am\xb9\xb8\x10l\xf1\xd3\x00\x00\xa0y`Ie3\xec\x01\x07\x0c\x04_\xca\x1d\x8c\x91\x85\xbb\xd8\x08T\x90\xdap\xb4\x068\x90V\xd5V+81W\xb3rHO\xc7\x19\xf4\xb0(M#\x83\x05=b\x0c\x81\xf2\xa8\xbdkV\x02\x0fL\xbetO\xd4\tMF0\xc0\xbe\xfc\xd7`\x7f\xfc\xcfF\xbfL\xa2_\xfe\xf0/A\xff\xf8\x9f\x8d>\xe1\xd9E\xff\xf2_3\xfb_\xfe\xb3\xd1\xbfL\xcf\xfe\xe5\xbf\x86\xf4\xbf\xfcgc\x9f&\xfd\xd5\xbff\xf2\x7f\xf6\xcf\x9e\xfcU\xcf\xe4\x97\x1b\x10\xa6\x96n\x0c\xd7\xe5\xae\xcb\xd7\x0cb\xa7\xd0\xe0\xcc\x02\x80\xb7\x9b.CD\xf6\x0b\\\x7f\xb5\x99\xd0\xa1\x00\xa7'
type(input) = <class 'bytes'>
errors = strict
type(errors) = <class 'str'>
decoding_table = ☺☻♥♦
♫☼►◄↕‼¶§▬↨↑↓→←∟↔▲▼ !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~⌂\u20ac\ufffe\u201aƒ\u201e\u2026\u2020\u2021\u02c6\u2030\u0160\u2039\u0152\ufffe\u017d\ufffe\ufffe\u2018\u2019\u201c\u201d\u2022\u2013\u2014\u02dc\u2122\u0161\u203a\u0153\ufffe\u017e\u0178 ¡¢£¤¥¦§¨©ª«¬®¯°±²³´µ¶·¸¹º»¼½¾¿ÀÁÂÃÄÅÆÇÈÉÊËÌÍÎÏÐÑÒÓÔÕÖ×ØÙÚÛÜÝÞßàáâãäåæçèéêëìíîïðñòóôõö÷øùúûüýþÿ
type(decoding_table) = <class 'str'>
|
Exception
|
def get_egg_info(prefix, all_pkgs=False):
"""
Return a set of canonical names of all Python packages (in `prefix`),
by inspecting the .egg-info files inside site-packages.
By default, only untracked (not conda installed) .egg-info files are
considered. Setting `all_pkgs` to True changes this.
"""
installed_pkgs = linked_data(prefix)
sp_dir = get_site_packages_dir(installed_pkgs)
if sp_dir is None:
return set()
conda_files = set()
for info in itervalues(installed_pkgs):
conda_files.update(info.get("files", []))
res = set()
for path in get_egg_info_files(join(prefix, sp_dir)):
f = rel_path(prefix, path)
if all_pkgs or f not in conda_files:
try:
dist = parse_egg_info(path)
except UnicodeDecodeError:
dist = None
if dist:
res.add(dist)
return res
|
def get_egg_info(prefix, all_pkgs=False):
"""
Return a set of canonical names of all Python packages (in `prefix`),
by inspecting the .egg-info files inside site-packages.
By default, only untracked (not conda installed) .egg-info files are
considered. Setting `all_pkgs` to True changes this.
"""
installed_pkgs = linked_data(prefix)
sp_dir = get_site_packages_dir(installed_pkgs)
if sp_dir is None:
return set()
conda_files = set()
for info in itervalues(installed_pkgs):
conda_files.update(info.get("files", []))
res = set()
for path in get_egg_info_files(join(prefix, sp_dir)):
f = rel_path(prefix, path)
if all_pkgs or f not in conda_files:
dist = parse_egg_info(path)
if dist:
res.add(dist)
return res
|
https://github.com/conda/conda/issues/2700
|
Traceback (most recent call last):
File "C:\Python\Scripts\conda-script.py", line 5, in <module>
sys.exit(main())
File "C:\Python\lib\site-packages\conda\cli\main.py", line 120, in main
args_func(args, p)
File "C:\Python\lib\site-packages\conda\cli\main.py", line 127, in args_func
args.func(args, p)
File "C:\Python\lib\site-packages\conda\cli\main_list.py", line 268, in execute
show_channel_urls=args.show_channel_urls)
File "C:\Python\lib\site-packages\conda\cli\main_list.py", line 178, in print_packages
installed.update(get_egg_info(prefix))
File "C:\Python\lib\site-packages\conda\egg_info.py", line 82, in get_egg_info
dist = parse_egg_info(path)
File "C:\Python\lib\site-packages\conda\egg_info.py", line 49, in parse_egg_info
for line in open(path):
File "C:\Python\lib\encodings\cp1252.py", line 39, in decode
raise Exception(msg) from exc
Exception: input = b'#!/bin/sh\r\nif [ `basename $0` = "setuptools-20.3-py3.5.egg" ]\r\nthen exec python3.5 -c "import sys, os; sys.path.insert(0, os.path.abspath(\'$0\')); from setuptools.command.easy_install import bootstrap; sys.exit(bootstrap())" "$@"\r\nelse\r\n echo $0 is not the correct name for this egg file.\r\n echo Please rename it back to setuptools-20.3-py3.5.egg and try again.\r\n exec false\r\nfi\r\nPK\x03\x04\x14\x00\x00\x00\x08\x00|]>H\\O\xbaEi\x00\x00\x00~\x00\x00\x00\x0f\x00\x00\x00easy_install.py-\xcc1\x0e\x83@\x0cD\xd1~Oa\xb9\x814\x1c 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W@\x1am\xb9\xb8\x10l\xf1\xd3\x00\x00\xa0y`Ie3\xec\x01\x07\x0c\x04_\xca\x1d\x8c\x91\x85\xbb\xd8\x08T\x90\xdap\xb4\x068\x90V\xd5V+81W\xb3rHO\xc7\x19\xf4\xb0(M#\x83\x05=b\x0c\x81\xf2\xa8\xbdkV\x02\x0fL\xbetO\xd4\tMF0\xc0\xbe\xfc\xd7`\x7f\xfc\xcfF\xbfL\xa2_\xfe\xf0/A\xff\xf8\x9f\x8d>\xe1\xd9E\xff\xf2_3\xfb_\xfe\xb3\xd1\xbfL\xcf\xfe\xe5\xbf\x86\xf4\xbf\xfcgc\x9f&\xfd\xd5\xbff\xf2\x7f\xf6\xcf\x9e\xfcU\xcf\xe4\x97\x1b\x10\xa6\x96n\x0c\xd7\xe5\xae\xcb\xd7\x0cb\xa7\xd0\xe0\xcc\x02\x80\xb7\x9b.CD\xf6\x0b\\\x7f\xb5\x99\xd0\xa1\x00\xa7'
type(input) = <class 'bytes'>
errors = strict
type(errors) = <class 'str'>
decoding_table = ☺☻♥♦
♫☼►◄↕‼¶§▬↨↑↓→←∟↔▲▼ !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~⌂\u20ac\ufffe\u201aƒ\u201e\u2026\u2020\u2021\u02c6\u2030\u0160\u2039\u0152\ufffe\u017d\ufffe\ufffe\u2018\u2019\u201c\u201d\u2022\u2013\u2014\u02dc\u2122\u0161\u203a\u0153\ufffe\u017e\u0178 ¡¢£¤¥¦§¨©ª«¬®¯°±²³´µ¶·¸¹º»¼½¾¿ÀÁÂÃÄÅÆÇÈÉÊËÌÍÎÏÐÑÒÓÔÕÖ×ØÙÚÛÜÝÞßàáâãäåæçèéêëìíîïðñòóôõö÷øùúûüýþÿ
type(decoding_table) = <class 'str'>
|
Exception
|
def main():
from conda.config import root_env_name, root_dir, changeps1
import conda.install
if "-h" in sys.argv or "--help" in sys.argv:
# all execution paths sys.exit at end.
help(sys.argv[1], sys.argv[2])
shell = sys.argv[2]
shelldict = shells[shell]
if sys.argv[1] == "..activate":
path = get_path(shelldict)
if len(sys.argv) == 3 or sys.argv[3].lower() == root_env_name.lower():
binpath = binpath_from_arg(root_env_name, shelldict=shelldict)
rootpath = None
elif len(sys.argv) == 4:
binpath = binpath_from_arg(sys.argv[3], shelldict=shelldict)
rootpath = binpath_from_arg(root_env_name, shelldict=shelldict)
else:
sys.exit("Error: did not expect more than one argument")
pathlist_str = pathlist_to_str(binpath)
sys.stderr.write("prepending %s to PATH\n" % shelldict["path_to"](pathlist_str))
# Clear the root path if it is present
if rootpath:
path = path.replace(shelldict["pathsep"].join(rootpath), "")
path = path.lstrip()
# prepend our new entries onto the existing path and make sure that the separator is native
path = shelldict["pathsep"].join(
binpath
+ [
path,
]
)
# Clean up any doubled-up path separators
path = path.replace(shelldict["pathsep"] * 2, shelldict["pathsep"])
# deactivation is handled completely in shell scripts - it restores backups of env variables.
# It is done in shell scripts because they handle state much better than we can here.
elif sys.argv[1] == "..checkenv":
if len(sys.argv) < 4:
sys.argv.append(root_env_name)
if len(sys.argv) > 4:
sys.exit("Error: did not expect more than one argument.")
if sys.argv[3].lower() == root_env_name.lower():
# no need to check root env and try to install a symlink there
sys.exit(0)
# this should throw an error and exit if the env or path can't be found.
try:
prefix = prefix_from_arg(sys.argv[3], shelldict=shelldict)
except ValueError as e:
sys.exit(getattr(e, "message", e))
# Make sure an env always has the conda symlink
try:
conda.install.symlink_conda(prefix, root_dir, shell)
except (IOError, OSError) as e:
if e.errno == errno.EPERM or e.errno == errno.EACCES:
msg = "Cannot activate environment {0}, not have write access to conda symlink".format(
sys.argv[2]
)
sys.exit(msg)
raise
sys.exit(0)
elif sys.argv[1] == "..setps1":
# path is a bit of a misnomer here. It is the prompt setting. However, it is returned
# below by printing. That is why it is named "path"
# DO NOT use os.getenv for this. One Windows especially, it shows cmd.exe settings
# for bash shells. This method uses the shell directly.
path = os.getenv(shelldict["promptvar"], "")
# failsafes
if not path:
if shelldict["exe"] == "cmd.exe":
path = "$P$G"
# strip off previous prefix, if any:
path = re.sub(".*\(\(.*\)\)\ ", "", path, count=1)
env_path = sys.argv[3]
if changeps1 and env_path:
path = "(({0})) {1}".format(os.path.split(env_path)[-1], path)
else:
# This means there is a bug in main.py
raise ValueError("unexpected command")
# This print is actually what sets the PATH or PROMPT variable. The shell
# script gets this value, and finishes the job.
print(path)
|
def main():
from conda.config import root_env_name, root_dir, changeps1
import conda.install
if "-h" in sys.argv or "--help" in sys.argv:
# all execution paths sys.exit at end.
help(sys.argv[1], sys.argv[2])
shell = sys.argv[2]
shelldict = shells[shell]
if sys.argv[1] == "..activate":
path = get_path(shelldict)
if len(sys.argv) == 3 or sys.argv[3].lower() == root_env_name.lower():
binpath = binpath_from_arg(root_env_name, shelldict=shelldict)
rootpath = None
elif len(sys.argv) == 4:
binpath = binpath_from_arg(sys.argv[3], shelldict=shelldict)
rootpath = binpath_from_arg(root_env_name, shelldict=shelldict)
else:
sys.exit("Error: did not expect more than one argument")
pathlist_str = pathlist_to_str(binpath)
sys.stderr.write("prepending %s to PATH\n" % shelldict["path_to"](pathlist_str))
# Clear the root path if it is present
if rootpath:
path = path.replace(shelldict["pathsep"].join(rootpath), "")
# prepend our new entries onto the existing path and make sure that the separator is native
path = shelldict["pathsep"].join(
binpath
+ [
path,
]
)
# deactivation is handled completely in shell scripts - it restores backups of env variables.
# It is done in shell scripts because they handle state much better than we can here.
elif sys.argv[1] == "..checkenv":
if len(sys.argv) < 4:
sys.argv.append(root_env_name)
if len(sys.argv) > 4:
sys.exit("Error: did not expect more than one argument.")
if sys.argv[3].lower() == root_env_name.lower():
# no need to check root env and try to install a symlink there
sys.exit(0)
# this should throw an error and exit if the env or path can't be found.
try:
prefix = prefix_from_arg(sys.argv[3], shelldict=shelldict)
except ValueError as e:
sys.exit(getattr(e, "message", e))
# Make sure an env always has the conda symlink
try:
conda.install.symlink_conda(prefix, root_dir, shell)
except (IOError, OSError) as e:
if e.errno == errno.EPERM or e.errno == errno.EACCES:
msg = "Cannot activate environment {0}, not have write access to conda symlink".format(
sys.argv[2]
)
sys.exit(msg)
raise
sys.exit(0)
elif sys.argv[1] == "..setps1":
# path is a bit of a misnomer here. It is the prompt setting. However, it is returned
# below by printing. That is why it is named "path"
# DO NOT use os.getenv for this. One Windows especially, it shows cmd.exe settings
# for bash shells. This method uses the shell directly.
path = os.getenv(shelldict["promptvar"], "")
# failsafes
if not path:
if shelldict["exe"] == "cmd.exe":
path = "$P$G"
# strip off previous prefix, if any:
path = re.sub(".*\(\(.*\)\)\ ", "", path, count=1)
env_path = sys.argv[3]
if changeps1 and env_path:
path = "(({0})) {1}".format(os.path.split(env_path)[-1], path)
else:
# This means there is a bug in main.py
raise ValueError("unexpected command")
# This print is actually what sets the PATH or PROMPT variable. The shell
# script gets this value, and finishes the job.
print(path)
|
https://github.com/conda/conda/issues/2680
|
$ conda activate myenv
Traceback (most recent call last):
File "/home/jrodriguez/.local/anaconda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/jrodriguez/.local/anaconda/lib/python3.5/site-packages/conda/cli/main.py", line 48, in main
activate.main()
File "/home/jrodriguez/.local/anaconda/lib/python3.5/site-packages/conda/cli/activate.py", line 119, in main
shelldict = shells[shell]
KeyError: 'myenv'
|
KeyError
|
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
meta_file = join(prefix, "conda-meta", dname + ".json")
if rec is None:
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get("url")
if "fn" not in rec:
rec["fn"] = url.rsplit("/", 1)[-1] if url else dname + ".tar.bz2"
if not url and "channel" in rec:
url = rec["url"] = rec["channel"] + rec["fn"]
if rec["fn"][:-8] != dname:
log.debug("Ignoring invalid package metadata file: %s" % meta_file)
return None
channel, schannel = url_channel(url)
rec["channel"] = channel
rec["schannel"] = schannel
cprefix = "" if schannel == "defaults" else schannel + "::"
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
|
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
if rec is None:
meta_file = join(prefix, "conda-meta", dname + ".json")
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get("url")
if "fn" not in rec:
rec["fn"] = url.rsplit("/", 1)[-1] if url else dname + ".tar.bz2"
if not url and "channel" in rec:
url = rec["url"] = rec["channel"] + rec["fn"]
channel, schannel = url_channel(url)
rec["channel"] = channel
rec["schannel"] = schannel
cprefix = "" if schannel == "defaults" else schannel + "::"
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
|
https://github.com/conda/conda/issues/2599
|
$ CIO_TEST=3 conda update pycrypto
...
Traceback (most recent call last):
File "/Users/ilan/python/bin/conda", line 6, in <module>
sys.exit(conda.cli.main.main())
File "/Users/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/Users/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/Users/ilan/conda/conda/cli/main_update.py", line 64, in execute
install.install(args, parser, 'update')
File "/Users/ilan/conda/conda/cli/install.py", line 232, in install
plan.add_defaults_to_specs(r, linked, specs, update=isupdate)
File "/Users/ilan/conda/conda/plan.py", line 344, in add_defaults_to_specs
names_linked = {r.index[fn]['name']: fn for fn in linked}
File "/Users/ilan/conda/conda/plan.py", line 344, in <dictcomp>
names_linked = {r.index[fn]['name']: fn for fn in linked}
KeyError: 'xar.tar.bz2'
|
KeyError
|
def add_defaults_to_specs(r, linked, specs, update=False):
# TODO: This should use the pinning mechanism. But don't change the API:
# cas uses it.
if r.explicit(specs):
return
log.debug("H0 specs=%r" % specs)
linked = [d if d.endswith(".tar.bz2") else d + ".tar.bz2" for d in linked]
names_linked = {r.index[fn]["name"]: fn for fn in linked if fn in r.index}
mspecs = list(map(MatchSpec, specs))
for name, def_ver in [
("python", default_python),
# Default version required, but only used for Python
("lua", None),
]:
if any(s.name == name and not s.is_simple() for s in mspecs):
# if any of the specifications mention the Python/Numpy version,
# we don't need to add the default spec
log.debug("H1 %s" % name)
continue
depends_on = {s for s in mspecs if r.depends_on(s, name)}
any_depends_on = bool(depends_on)
log.debug("H2 %s %s" % (name, any_depends_on))
if not any_depends_on:
# if nothing depends on Python/Numpy AND the Python/Numpy is not
# specified, we don't need to add the default spec
log.debug("H2A %s" % name)
continue
if any(s.is_exact() for s in depends_on):
# If something depends on Python/Numpy, but the spec is very
# explicit, we also don't need to add the default spec
log.debug("H2B %s" % name)
continue
if name in names_linked:
# if Python/Numpy is already linked, we add that instead of the
# default
log.debug("H3 %s" % name)
fkey = names_linked[name]
info = r.index[fkey]
ver = ".".join(info["version"].split(".", 2)[:2])
spec = "%s %s* (target=%s)" % (info["name"], ver, fkey)
specs.append(spec)
continue
if name == "python" and def_ver.startswith("3."):
# Don't include Python 3 in the specs if this is the Python 3
# version of conda.
continue
if def_ver is not None:
specs.append("%s %s*" % (name, def_ver))
log.debug("HF specs=%r" % specs)
|
def add_defaults_to_specs(r, linked, specs, update=False):
# TODO: This should use the pinning mechanism. But don't change the API:
# cas uses it.
if r.explicit(specs):
return
log.debug("H0 specs=%r" % specs)
linked = [d if d.endswith(".tar.bz2") else d + ".tar.bz2" for d in linked]
names_linked = {name_dist(dist): dist for dist in linked}
mspecs = list(map(MatchSpec, specs))
for name, def_ver in [
("python", default_python),
# Default version required, but only used for Python
("lua", None),
]:
if any(s.name == name and not s.is_simple() for s in mspecs):
# if any of the specifications mention the Python/Numpy version,
# we don't need to add the default spec
log.debug("H1 %s" % name)
continue
depends_on = {s for s in mspecs if r.depends_on(s, name)}
any_depends_on = bool(depends_on)
log.debug("H2 %s %s" % (name, any_depends_on))
if not any_depends_on:
# if nothing depends on Python/Numpy AND the Python/Numpy is not
# specified, we don't need to add the default spec
log.debug("H2A %s" % name)
continue
if any(s.is_exact() for s in depends_on):
# If something depends on Python/Numpy, but the spec is very
# explicit, we also don't need to add the default spec
log.debug("H2B %s" % name)
continue
if name in names_linked:
# if Python/Numpy is already linked, we add that instead of the
# default
log.debug("H3 %s" % name)
fkey = names_linked[name]
info = r.index[fkey]
ver = ".".join(info["version"].split(".", 2)[:2])
spec = "%s %s* (target=%s)" % (info["name"], ver, fkey)
specs.append(spec)
continue
if name == "python" and def_ver.startswith("3."):
# Don't include Python 3 in the specs if this is the Python 3
# version of conda.
continue
if def_ver is not None:
specs.append("%s %s*" % (name, def_ver))
log.debug("HF specs=%r" % specs)
|
https://github.com/conda/conda/issues/2599
|
$ CIO_TEST=3 conda update pycrypto
...
Traceback (most recent call last):
File "/Users/ilan/python/bin/conda", line 6, in <module>
sys.exit(conda.cli.main.main())
File "/Users/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/Users/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/Users/ilan/conda/conda/cli/main_update.py", line 64, in execute
install.install(args, parser, 'update')
File "/Users/ilan/conda/conda/cli/install.py", line 232, in install
plan.add_defaults_to_specs(r, linked, specs, update=isupdate)
File "/Users/ilan/conda/conda/plan.py", line 344, in add_defaults_to_specs
names_linked = {r.index[fn]['name']: fn for fn in linked}
File "/Users/ilan/conda/conda/plan.py", line 344, in <dictcomp>
names_linked = {r.index[fn]['name']: fn for fn in linked}
KeyError: 'xar.tar.bz2'
|
KeyError
|
def get_index(
channel_urls=(),
prepend=True,
platform=None,
use_local=False,
use_cache=False,
unknown=False,
offline=False,
prefix=None,
):
"""
Return the index of packages available on the channels
If prepend=False, only the channels passed in as arguments are used.
If platform=None, then the current platform is used.
If prefix is supplied, then the packages installed in that prefix are added.
"""
if use_local:
channel_urls = ["local"] + list(channel_urls)
channel_urls = normalize_urls(channel_urls, platform, offline)
if prepend:
channel_urls.extend(get_channel_urls(platform, offline))
channel_urls = prioritize_channels(channel_urls)
index = fetch_index(channel_urls, use_cache=use_cache, unknown=unknown)
if prefix:
priorities = {c: p for c, p in itervalues(channel_urls)}
maxp = max(itervalues(priorities)) + 1
for dist, info in iteritems(install.linked_data(prefix)):
fn = info["fn"]
schannel = info["schannel"]
prefix = "" if schannel == "defaults" else schannel + "::"
priority = priorities.get(schannel, maxp)
key = prefix + fn
if key in index:
# Copy the link information so the resolver knows this is installed
index[key]["link"] = info.get("link")
else:
# only if the package in not in the repodata, use local
# conda-meta (with 'depends' defaulting to [])
info.setdefault("depends", [])
info["priority"] = priority
index[key] = info
return index
|
def get_index(
channel_urls=(),
prepend=True,
platform=None,
use_local=False,
use_cache=False,
unknown=False,
offline=False,
prefix=None,
):
"""
Return the index of packages available on the channels
If prepend=False, only the channels passed in as arguments are used.
If platform=None, then the current platform is used.
If prefix is supplied, then the packages installed in that prefix are added.
"""
if use_local:
channel_urls = ["local"] + list(channel_urls)
channel_urls = normalize_urls(channel_urls, platform, offline)
if prepend:
channel_urls.extend(get_channel_urls(platform, offline))
channel_urls = prioritize_channels(channel_urls)
index = fetch_index(channel_urls, use_cache=use_cache, unknown=unknown)
if prefix:
priorities = {c: p for c, p in itervalues(channel_urls)}
for dist, info in iteritems(install.linked_data(prefix)):
fn = info["fn"]
schannel = info["schannel"]
prefix = "" if schannel == "defaults" else schannel + "::"
priority = priorities.get(schannel, 0)
key = prefix + fn
if key in index:
# Copy the link information so the resolver knows this is installed
index[key]["link"] = info.get("link")
else:
# only if the package in not in the repodata, use local
# conda-meta (with 'depends' defaulting to [])
info.setdefault("depends", [])
info["priority"] = priority
index[key] = info
return index
|
https://github.com/conda/conda/issues/2538
|
Traceback (most recent call last):
File "/home/ilan/a/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 556, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1059, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def package_cache():
"""
Initializes the package cache. Each entry in the package cache
dictionary contains three lists:
- urls: the URLs used to refer to that package
- files: the full pathnames to fetched copies of that package
- dirs: the full pathnames to extracted copies of that package
Nominally there should be no more than one entry in each list, but
in theory this can handle the presence of multiple copies.
"""
if package_cache_:
return package_cache_
# Stops recursion
package_cache_["@"] = None
for pdir in pkgs_dirs:
try:
data = open(join(pdir, "urls.txt")).read()
for url in data.split()[::-1]:
if "/" in url:
add_cached_package(pdir, url)
except IOError:
pass
if isdir(pdir):
for fn in os.listdir(pdir):
add_cached_package(pdir, fn)
del package_cache_["@"]
return package_cache_
|
def package_cache():
"""
Initializes the package cache. Each entry in the package cache
dictionary contains three lists:
- urls: the URLs used to refer to that package
- files: the full pathnames to fetched copies of that package
- dirs: the full pathnames to extracted copies of that package
Nominally there should be no more than one entry in each list, but
in theory this can handle the presence of multiple copies.
"""
if package_cache_:
return package_cache_
# Stops recursion
package_cache_["@"] = None
for pdir in pkgs_dirs:
try:
data = open(join(pdir, "urls.txt")).read()
for url in data.split()[::-1]:
if "/" in url:
add_cached_package(pdir, url)
except IOError:
pass
for fn in os.listdir(pdir):
add_cached_package(pdir, fn)
del package_cache_["@"]
return package_cache_
|
https://github.com/conda/conda/issues/2596
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda-build", line 6, in <module>
exec(compile(open(__file__).read(), __file__, 'exec'))
File "/home/ilan/conda-build/bin/conda-build", line 5, in <module>
sys.exit(main())
File "/home/ilan/conda-build/conda_build/main_build.py", line 140, in main
args_func(args, p)
File "/home/ilan/conda-build/conda_build/main_build.py", line 380, in args_func
args.func(args, p)
File "/home/ilan/conda-build/conda_build/main_build.py", line 367, in execute
build.test(m)
File "/home/ilan/conda-build/conda_build/build.py", line 613, in test
rm_pkgs_cache(m.dist())
File "/home/ilan/conda-build/conda_build/build.py", line 386, in rm_pkgs_cache
plan.execute_plan(rmplan)
File "/home/ilan/conda/conda/plan.py", line 583, in execute_plan
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 65, in RM_FETCHED_CMD
install.rm_fetched(arg)
File "/home/ilan/conda/conda/install.py", line 749, in rm_fetched
rec = package_cache().get(dist)
File "/home/ilan/conda/conda/install.py", line 692, in package_cache
for fn in os.listdir(pdir):
OSError: [Errno 2] No such file or directory: '/home/ilan/minonda/pkgs'
|
OSError
|
def list_packages(
prefix, installed, regex=None, format="human", show_channel_urls=show_channel_urls
):
res = 1
result = []
for dist in get_packages(installed, regex):
res = 0
if format == "canonical":
result.append(dist)
continue
if format == "export":
result.append("=".join(dist2quad(dist)[:3]))
continue
try:
# Returns None if no meta-file found (e.g. pip install)
info = install.is_linked(prefix, dist)
features = set(info.get("features", "").split())
disp = "%(name)-25s %(version)-15s %(build)15s" % info
disp += " %s" % common.disp_features(features)
schannel = info.get("schannel")
if (
show_channel_urls
or show_channel_urls is None
and schannel != "defaults"
):
disp += " %s" % schannel
result.append(disp)
except (AttributeError, IOError, KeyError, ValueError) as e:
log.debug(str(e))
result.append("%-25s %-15s %s" % dist2quad(dist)[:3])
return res, result
|
def list_packages(
prefix, installed, regex=None, format="human", show_channel_urls=show_channel_urls
):
res = 1
result = []
for dist in get_packages(installed, regex):
res = 0
if format == "canonical":
result.append(dist)
continue
if format == "export":
result.append("=".join(dist2quad(dist)[:3]))
continue
try:
# Returns None if no meta-file found (e.g. pip install)
info = install.is_linked(prefix, dist)
features = set(info.get("features", "").split())
disp = "%(name)-25s %(version)-15s %(build)15s" % info
disp += " %s" % common.disp_features(features)
schannel = info.get("schannel")
if (
show_channel_urls
or show_channel_urls is None
and schannel != "defaults"
):
disp += " %s" % schannel
result.append(disp)
except (AttributeError, IOError, KeyError, ValueError) as e:
log.debug(str(e))
result.append("%-25s %-15s %15s" % dist2quad(dist, channel=False))
return res, result
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def pretty_diff(diff):
added = {}
removed = {}
for s in diff:
fn = s[1:]
name, version, _, channel = dist2quad(fn)
if channel != "defaults":
version += " (%s)" % channel
if s.startswith("-"):
removed[name.lower()] = version
elif s.startswith("+"):
added[name.lower()] = version
changed = set(added) & set(removed)
for name in sorted(changed):
yield " %s {%s -> %s}" % (name, removed[name], added[name])
for name in sorted(set(removed) - changed):
yield "-%s-%s" % (name, removed[name])
for name in sorted(set(added) - changed):
yield "+%s-%s" % (name, added[name])
|
def pretty_diff(diff):
added = {}
removed = {}
for s in diff:
fn = s[1:]
name, version, unused_build = dist2quad(fn, channel=False)
if s.startswith("-"):
removed[name.lower()] = version
elif s.startswith("+"):
added[name.lower()] = version
changed = set(added) & set(removed)
for name in sorted(changed):
yield " %s {%s -> %s}" % (name, removed[name], added[name])
for name in sorted(set(removed) - changed):
yield "-%s-%s" % (name, removed[name])
for name in sorted(set(added) - changed):
yield "+%s-%s" % (name, added[name])
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def object_log(self):
result = []
for i, (date, content, unused_com) in enumerate(self.parse()):
# Based on Mateusz's code; provides more details about the
# history event
event = {
"date": date,
"rev": i,
"install": [],
"remove": [],
"upgrade": [],
"downgrade": [],
}
added = {}
removed = {}
if is_diff(content):
for pkg in content:
name, version, build, channel = dist2quad(pkg[1:])
if pkg.startswith("+"):
added[name.lower()] = (version, build, channel)
elif pkg.startswith("-"):
removed[name.lower()] = (version, build, channel)
changed = set(added) & set(removed)
for name in sorted(changed):
old = removed[name]
new = added[name]
details = {
"old": "-".join((name,) + old),
"new": "-".join((name,) + new),
}
if new > old:
event["upgrade"].append(details)
else:
event["downgrade"].append(details)
for name in sorted(set(removed) - changed):
event["remove"].append("-".join((name,) + removed[name]))
for name in sorted(set(added) - changed):
event["install"].append("-".join((name,) + added[name]))
else:
for pkg in sorted(content):
event["install"].append(pkg)
result.append(event)
return result
|
def object_log(self):
result = []
for i, (date, content, unused_com) in enumerate(self.parse()):
# Based on Mateusz's code; provides more details about the
# history event
event = {
"date": date,
"rev": i,
"install": [],
"remove": [],
"upgrade": [],
"downgrade": [],
}
added = {}
removed = {}
if is_diff(content):
for pkg in content:
name, version, build = dist2quad(pkg[1:], channel=False)
if pkg.startswith("+"):
added[name.lower()] = (version, build)
elif pkg.startswith("-"):
removed[name.lower()] = (version, build)
changed = set(added) & set(removed)
for name in sorted(changed):
old = removed[name]
new = added[name]
details = {
"old": "-".join((name,) + old),
"new": "-".join((name,) + new),
}
if new > old:
event["upgrade"].append(details)
else:
event["downgrade"].append(details)
for name in sorted(set(removed) - changed):
event["remove"].append("-".join((name,) + removed[name]))
for name in sorted(set(added) - changed):
event["install"].append("-".join((name,) + added[name]))
else:
for pkg in sorted(content):
event["install"].append(pkg)
result.append(event)
return result
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def dist2quad(dist):
channel, dist = dist2pair(dist)
parts = dist.rsplit("-", 2) + ["", ""]
return (parts[0], parts[1], parts[2], channel)
|
def dist2quad(dist, channel=True):
dist = str(dist)
if dist.endswith(".tar.bz2"):
dist = dist[:-8]
parts = dist.rsplit("-", 2)
if len(parts) < 3:
parts = parts + [""] * (3 - len(parts))
chan_name, version, build = parts
if not channel:
return chan_name, version, build
parts = chan_name.split("::")
return (parts[-1], version, build, "defaults" if len(parts) < 2 else parts[0])
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def name_dist(dist):
return dist2name(dist)
|
def name_dist(dist):
return dist2quad(dist)[0]
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def create_meta(prefix, dist, info_dir, extra_info):
"""
Create the conda metadata, in a given prefix, for a given package.
"""
# read info/index.json first
with open(join(info_dir, "index.json")) as fi:
meta = json.load(fi)
# add extra info, add to our intenral cache
meta.update(extra_info)
if "url" not in meta:
meta["url"] = read_url(dist)
# write into <env>/conda-meta/<dist>.json
meta_dir = join(prefix, "conda-meta")
if not isdir(meta_dir):
os.makedirs(meta_dir)
with open(join(meta_dir, dist2filename(dist, ".json")), "w") as fo:
json.dump(meta, fo, indent=2, sort_keys=True)
if prefix in linked_data_:
load_linked_data(prefix, dist, meta)
|
def create_meta(prefix, dist, info_dir, extra_info):
"""
Create the conda metadata, in a given prefix, for a given package.
"""
# read info/index.json first
with open(join(info_dir, "index.json")) as fi:
meta = json.load(fi)
# add extra info, add to our intenral cache
meta.update(extra_info)
if "url" not in meta:
meta["url"] = read_url(dist)
# write into <env>/conda-meta/<dist>.json
meta_dir = join(prefix, "conda-meta")
if not isdir(meta_dir):
os.makedirs(meta_dir)
with open(join(meta_dir, _dist2filename(dist, ".json")), "w") as fo:
json.dump(meta, fo, indent=2, sort_keys=True)
if prefix in linked_data_:
load_linked_data(prefix, dist, meta)
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def try_hard_link(pkgs_dir, prefix, dist):
dist = dist2filename(dist, "")
src = join(pkgs_dir, dist, "info", "index.json")
dst = join(prefix, ".tmp-%s" % dist)
assert isfile(src), src
assert not isfile(dst), dst
try:
if not isdir(prefix):
os.makedirs(prefix)
_link(src, dst, LINK_HARD)
# Some file systems (at least BeeGFS) do not support hard-links
# between files in different directories. Depending on the
# file system configuration, a symbolic link may be created
# instead. If a symbolic link is created instead of a hard link,
# return False.
return not os.path.islink(dst)
except OSError:
return False
finally:
rm_rf(dst)
rm_empty_dir(prefix)
|
def try_hard_link(pkgs_dir, prefix, dist):
dist = _dist2filename(dist, "")
src = join(pkgs_dir, dist, "info", "index.json")
dst = join(prefix, ".tmp-%s" % dist)
assert isfile(src), src
assert not isfile(dst), dst
try:
if not isdir(prefix):
os.makedirs(prefix)
_link(src, dst, LINK_HARD)
# Some file systems (at least BeeGFS) do not support hard-links
# between files in different directories. Depending on the
# file system configuration, a symbolic link may be created
# instead. If a symbolic link is created instead of a hard link,
# return False.
return not os.path.islink(dst)
except OSError:
return False
finally:
rm_rf(dst)
rm_empty_dir(prefix)
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def find_new_location(dist):
"""
Determines the download location for the given package, and the name
of a package, if any, that must be removed to make room. If the
given package is already in the cache, it returns its current location,
under the assumption that it will be overwritten. If the conflict
value is None, that means there is no other package with that same
name present in the cache (e.g., no collision).
"""
rec = package_cache().get(dist)
if rec:
return dirname((rec["files"] or rec["dirs"])[0]), None
fname = dist2filename(dist)
dname = fname[:-8]
# Look for a location with no conflicts
# On the second pass, just pick the first location
for p in range(2):
for pkg_dir in pkgs_dirs:
pkg_path = join(pkg_dir, fname)
prefix = fname_table_.get(pkg_path)
if p or prefix is None:
return pkg_dir, prefix + dname if p else None
|
def find_new_location(dist):
"""
Determines the download location for the given package, and the name
of a package, if any, that must be removed to make room. If the
given package is already in the cache, it returns its current location,
under the assumption that it will be overwritten. If the conflict
value is None, that means there is no other package with that same
name present in the cache (e.g., no collision).
"""
rec = package_cache().get(dist)
if rec:
return dirname((rec["files"] or rec["dirs"])[0]), None
fname = _dist2filename(dist)
dname = fname[:-8]
# Look for a location with no conflicts
# On the second pass, just pick the first location
for p in range(2):
for pkg_dir in pkgs_dirs:
pkg_path = join(pkg_dir, fname)
prefix = fname_table_.get(pkg_path)
if p or prefix is None:
return pkg_dir, prefix + dname if p else None
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
if rec is None:
meta_file = join(prefix, "conda-meta", dname + ".json")
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get("url")
if "fn" not in rec:
rec["fn"] = url.rsplit("/", 1)[-1] if url else dname + ".tar.bz2"
if not url and "channel" in rec:
url = rec["url"] = rec["channel"] + rec["fn"]
channel, schannel = url_channel(url)
rec["channel"] = channel
rec["schannel"] = schannel
cprefix = "" if schannel == "defaults" else schannel + "::"
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
|
def load_linked_data(prefix, dist, rec=None):
schannel, dname = _dist2pair(dist)
if rec is None:
meta_file = join(prefix, "conda-meta", dname + ".json")
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get("url")
if "fn" not in rec:
rec["fn"] = url.rsplit("/", 1)[-1] if url else dname + ".tar.bz2"
if not url and "channel" in rec:
url = rec["url"] = rec["channel"] + rec["fn"]
channel, schannel = url_channel(url)
rec["channel"] = channel
rec["schannel"] = schannel
cprefix = "" if schannel == "defaults" else schannel + "::"
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def delete_linked_data(prefix, dist, delete=True):
recs = linked_data_.get(prefix)
if recs and dist in recs:
del recs[dist]
if delete:
meta_path = join(prefix, "conda-meta", dist2filename(dist, ".json"))
if isfile(meta_path):
os.unlink(meta_path)
|
def delete_linked_data(prefix, dist, delete=True):
recs = linked_data_.get(prefix)
if recs and dist in recs:
del recs[dist]
if delete:
meta_path = join(prefix, "conda-meta", _dist2filename(dist, ".json"))
if isfile(meta_path):
os.unlink(meta_path)
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def link(prefix, dist, linktype=LINK_HARD, index=None):
"""
Set up a package in a specified (environment) prefix. We assume that
the package has been extracted (using extract() above).
"""
index = index or {}
source_dir = is_extracted(dist)
assert source_dir is not None
pkgs_dir = dirname(source_dir)
log.debug(
"pkgs_dir=%r, prefix=%r, dist=%r, linktype=%r"
% (pkgs_dir, prefix, dist, linktype)
)
if not run_script(source_dir, dist, "pre-link", prefix):
sys.exit("Error: pre-link failed: %s" % dist)
info_dir = join(source_dir, "info")
files = list(yield_lines(join(info_dir, "files")))
has_prefix_files = read_has_prefix(join(info_dir, "has_prefix"))
no_link = read_no_link(info_dir)
with Locked(prefix), Locked(pkgs_dir):
for f in files:
src = join(source_dir, f)
dst = join(prefix, f)
dst_dir = dirname(dst)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if os.path.exists(dst):
log.warn("file already exists: %r" % dst)
try:
os.unlink(dst)
except OSError:
log.error("failed to unlink: %r" % dst)
if on_win:
try:
move_path_to_trash(dst)
except ImportError:
# This shouldn't be an issue in the installer anyway
pass
lt = linktype
if f in has_prefix_files or f in no_link or islink(src):
lt = LINK_COPY
try:
_link(src, dst, lt)
except OSError as e:
log.error(
"failed to link (src=%r, dst=%r, type=%r, error=%r)"
% (src, dst, lt, e)
)
if name_dist(dist) == "_cache":
return
for f in sorted(has_prefix_files):
placeholder, mode = has_prefix_files[f]
try:
update_prefix(join(prefix, f), prefix, placeholder, mode)
except PaddingError:
sys.exit(
"ERROR: placeholder '%s' too short in: %s\n" % (placeholder, dist)
)
mk_menus(prefix, files, remove=False)
if not run_script(prefix, dist, "post-link"):
sys.exit("Error: post-link failed for: %s" % dist)
meta_dict = index.get(dist + ".tar.bz2", {})
meta_dict["url"] = read_url(dist)
try:
alt_files_path = join(prefix, "conda-meta", dist2filename(dist, ".files"))
meta_dict["files"] = list(yield_lines(alt_files_path))
os.unlink(alt_files_path)
except IOError:
meta_dict["files"] = files
meta_dict["link"] = {"source": source_dir, "type": link_name_map.get(linktype)}
if "icon" in meta_dict:
meta_dict["icondata"] = read_icondata(source_dir)
create_meta(prefix, dist, info_dir, meta_dict)
|
def link(prefix, dist, linktype=LINK_HARD, index=None):
"""
Set up a package in a specified (environment) prefix. We assume that
the package has been extracted (using extract() above).
"""
index = index or {}
source_dir = is_extracted(dist)
assert source_dir is not None
pkgs_dir = dirname(source_dir)
log.debug(
"pkgs_dir=%r, prefix=%r, dist=%r, linktype=%r"
% (pkgs_dir, prefix, dist, linktype)
)
if not run_script(source_dir, dist, "pre-link", prefix):
sys.exit("Error: pre-link failed: %s" % dist)
info_dir = join(source_dir, "info")
files = list(yield_lines(join(info_dir, "files")))
has_prefix_files = read_has_prefix(join(info_dir, "has_prefix"))
no_link = read_no_link(info_dir)
with Locked(prefix), Locked(pkgs_dir):
for f in files:
src = join(source_dir, f)
dst = join(prefix, f)
dst_dir = dirname(dst)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if os.path.exists(dst):
log.warn("file already exists: %r" % dst)
try:
os.unlink(dst)
except OSError:
log.error("failed to unlink: %r" % dst)
if on_win:
try:
move_path_to_trash(dst)
except ImportError:
# This shouldn't be an issue in the installer anyway
pass
lt = linktype
if f in has_prefix_files or f in no_link or islink(src):
lt = LINK_COPY
try:
_link(src, dst, lt)
except OSError as e:
log.error(
"failed to link (src=%r, dst=%r, type=%r, error=%r)"
% (src, dst, lt, e)
)
if name_dist(dist) == "_cache":
return
for f in sorted(has_prefix_files):
placeholder, mode = has_prefix_files[f]
try:
update_prefix(join(prefix, f), prefix, placeholder, mode)
except PaddingError:
sys.exit(
"ERROR: placeholder '%s' too short in: %s\n" % (placeholder, dist)
)
mk_menus(prefix, files, remove=False)
if not run_script(prefix, dist, "post-link"):
sys.exit("Error: post-link failed for: %s" % dist)
meta_dict = index.get(dist + ".tar.bz2", {})
meta_dict["url"] = read_url(dist)
try:
alt_files_path = join(prefix, "conda-meta", _dist2filename(dist, ".files"))
meta_dict["files"] = list(yield_lines(alt_files_path))
os.unlink(alt_files_path)
except IOError:
meta_dict["files"] = files
meta_dict["link"] = {"source": source_dir, "type": link_name_map.get(linktype)}
if "icon" in meta_dict:
meta_dict["icondata"] = read_icondata(source_dir)
create_meta(prefix, dist, info_dir, meta_dict)
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def ensure_linked_actions(dists, prefix, index=None, force=False, always_copy=False):
actions = defaultdict(list)
actions[inst.PREFIX] = prefix
actions["op_order"] = (
inst.RM_FETCHED,
inst.FETCH,
inst.RM_EXTRACTED,
inst.EXTRACT,
inst.UNLINK,
inst.LINK,
)
for dist in dists:
fetched_in = install.is_fetched(dist)
extracted_in = install.is_extracted(dist)
if fetched_in and index is not None:
# Test the MD5, and possibly re-fetch
fn = dist + ".tar.bz2"
try:
if md5_file(fetched_in) != index[fn]["md5"]:
# RM_FETCHED now removes the extracted data too
actions[inst.RM_FETCHED].append(dist)
# Re-fetch, re-extract, re-link
fetched_in = extracted_in = None
force = True
except KeyError:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if not force and install.is_linked(prefix, dist):
continue
if extracted_in and force:
# Always re-extract in the force case
actions[inst.RM_EXTRACTED].append(dist)
extracted_in = None
# Otherwise we need to extract, and possibly fetch
if not extracted_in and not fetched_in:
# If there is a cache conflict, clean it up
fetched_in, conflict = install.find_new_location(dist)
fetched_in = join(fetched_in, install.dist2filename(dist))
if conflict is not None:
actions[inst.RM_FETCHED].append(conflict)
actions[inst.FETCH].append(dist)
if not extracted_in:
actions[inst.EXTRACT].append(dist)
fetched_dist = extracted_in or fetched_in[:-8]
fetched_dir = dirname(fetched_dist)
try:
# Determine what kind of linking is necessary
if not extracted_in:
# If not already extracted, create some dummy
# data to test with
install.rm_rf(fetched_dist)
ppath = join(fetched_dist, "info")
os.makedirs(ppath)
index_json = join(ppath, "index.json")
with open(index_json, "w"):
pass
if config_always_copy or always_copy:
lt = install.LINK_COPY
elif install.try_hard_link(fetched_dir, prefix, dist):
lt = install.LINK_HARD
elif allow_softlinks and sys.platform != "win32":
lt = install.LINK_SOFT
else:
lt = install.LINK_COPY
actions[inst.LINK].append("%s %d" % (dist, lt))
except (OSError, IOError):
actions[inst.LINK].append(dist)
finally:
if not extracted_in:
# Remove the dummy data
try:
install.rm_rf(fetched_dist)
except (OSError, IOError):
pass
return actions
|
def ensure_linked_actions(dists, prefix, index=None, force=False, always_copy=False):
actions = defaultdict(list)
actions[inst.PREFIX] = prefix
actions["op_order"] = (
inst.RM_FETCHED,
inst.FETCH,
inst.RM_EXTRACTED,
inst.EXTRACT,
inst.UNLINK,
inst.LINK,
)
for dist in dists:
fetched_in = install.is_fetched(dist)
extracted_in = install.is_extracted(dist)
if fetched_in and index is not None:
# Test the MD5, and possibly re-fetch
fn = dist + ".tar.bz2"
try:
if md5_file(fetched_in) != index[fn]["md5"]:
# RM_FETCHED now removes the extracted data too
actions[inst.RM_FETCHED].append(dist)
# Re-fetch, re-extract, re-link
fetched_in = extracted_in = None
force = True
except KeyError:
sys.stderr.write("Warning: cannot lookup MD5 of: %s" % fn)
if not force and install.is_linked(prefix, dist):
continue
if extracted_in and force:
# Always re-extract in the force case
actions[inst.RM_EXTRACTED].append(dist)
extracted_in = None
# Otherwise we need to extract, and possibly fetch
if not extracted_in and not fetched_in:
# If there is a cache conflict, clean it up
fetched_in, conflict = install.find_new_location(dist)
fetched_in = join(fetched_in, install._dist2filename(dist))
if conflict is not None:
actions[inst.RM_FETCHED].append(conflict)
actions[inst.FETCH].append(dist)
if not extracted_in:
actions[inst.EXTRACT].append(dist)
fetched_dist = extracted_in or fetched_in[:-8]
fetched_dir = dirname(fetched_dist)
try:
# Determine what kind of linking is necessary
if not extracted_in:
# If not already extracted, create some dummy
# data to test with
install.rm_rf(fetched_dist)
ppath = join(fetched_dist, "info")
os.makedirs(ppath)
index_json = join(ppath, "index.json")
with open(index_json, "w"):
pass
if config_always_copy or always_copy:
lt = install.LINK_COPY
elif install.try_hard_link(fetched_dir, prefix, dist):
lt = install.LINK_HARD
elif allow_softlinks and sys.platform != "win32":
lt = install.LINK_SOFT
else:
lt = install.LINK_COPY
actions[inst.LINK].append("%s %d" % (dist, lt))
except (OSError, IOError):
actions[inst.LINK].append(dist)
finally:
if not extracted_in:
# Remove the dummy data
try:
install.rm_rf(fetched_dist)
except (OSError, IOError):
pass
return actions
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def add_defaults_to_specs(r, linked, specs, update=False):
# TODO: This should use the pinning mechanism. But don't change the API:
# cas uses it.
if r.explicit(specs):
return
log.debug("H0 specs=%r" % specs)
linked = [fn if fn.endswith(".tar.bz2") else fn + ".tar.bz2" for fn in linked]
names_linked = {r.index[fn]["name"]: fn for fn in linked}
names_ms = {MatchSpec(s).name: MatchSpec(s) for s in specs}
for name, def_ver in [
("python", default_python),
# Default version required, but only used for Python
("lua", None),
]:
ms = names_ms.get(name)
if ms and not ms.is_simple():
# if any of the specifications mention the Python/Numpy version,
# we don't need to add the default spec
log.debug("H1 %s" % name)
continue
any_depends_on = any(
ms2.name == name
for spec in specs
for fn in r.find_matches(spec)
for ms2 in r.ms_depends(fn)
)
log.debug("H2 %s %s" % (name, any_depends_on))
if not any_depends_on and name not in names_ms:
# if nothing depends on Python/Numpy AND the Python/Numpy is not
# specified, we don't need to add the default spec
log.debug("H2A %s" % name)
continue
if any_depends_on and len(specs) >= 1 and MatchSpec(specs[0]).is_exact():
# if something depends on Python/Numpy, but the spec is very
# explicit, we also don't need to add the default spec
log.debug("H2B %s" % name)
continue
if name in names_linked:
# if Python/Numpy is already linked, we add that instead of the
# default
log.debug("H3 %s" % name)
fkey = names_linked[name]
info = r.index[fkey]
ver = ".".join(info["version"].split(".", 2)[:2])
spec = "%s %s*" % (info["name"], ver)
if update:
spec += " (target=%s)" % fkey
specs.append(spec)
continue
if (name, def_ver) in [("python", "3.3"), ("python", "3.4"), ("python", "3.5")]:
# Don't include Python 3 in the specs if this is the Python 3
# version of conda.
continue
specs.append("%s %s*" % (name, def_ver))
log.debug("HF specs=%r" % specs)
|
def add_defaults_to_specs(r, linked, specs, update=False):
# TODO: This should use the pinning mechanism. But don't change the API:
# cas uses it.
if r.explicit(specs):
return
log.debug("H0 specs=%r" % specs)
names_linked = {install.name_dist(dist): dist for dist in linked}
names_ms = {MatchSpec(s).name: MatchSpec(s) for s in specs}
for name, def_ver in [
("python", default_python),
# Default version required, but only used for Python
("lua", None),
]:
ms = names_ms.get(name)
if ms and not ms.is_simple():
# if any of the specifications mention the Python/Numpy version,
# we don't need to add the default spec
log.debug("H1 %s" % name)
continue
any_depends_on = any(
ms2.name == name
for spec in specs
for fn in r.find_matches(spec)
for ms2 in r.ms_depends(fn)
)
log.debug("H2 %s %s" % (name, any_depends_on))
if not any_depends_on and name not in names_ms:
# if nothing depends on Python/Numpy AND the Python/Numpy is not
# specified, we don't need to add the default spec
log.debug("H2A %s" % name)
continue
if any_depends_on and len(specs) >= 1 and MatchSpec(specs[0]).is_exact():
# if something depends on Python/Numpy, but the spec is very
# explicit, we also don't need to add the default spec
log.debug("H2B %s" % name)
continue
if name in names_linked:
# if Python/Numpy is already linked, we add that instead of the
# default
log.debug("H3 %s" % name)
fkey = names_linked[name] + ".tar.bz2"
info = r.index[fkey]
ver = ".".join(info["version"].split(".", 2)[:2])
spec = "%s %s*" % (info["name"], ver)
if update:
spec += " (target=%s)" % fkey
specs.append(spec)
continue
if (name, def_ver) in [("python", "3.3"), ("python", "3.4"), ("python", "3.5")]:
# Don't include Python 3 in the specs if this is the Python 3
# version of conda.
continue
specs.append("%s %s*" % (name, def_ver))
log.debug("HF specs=%r" % specs)
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
def __init__(self, index, sort=False, processed=False):
self.index = index
if not processed:
for fkey, info in iteritems(index.copy()):
if fkey.endswith("]"):
continue
for fstr in chain(
info.get("features", "").split(),
info.get("track_features", "").split(),
track_features or (),
):
self.add_feature(fstr, group=False)
for fstr in iterkeys(info.get("with_features_depends", {})):
index["%s[%s]" % (fkey, fstr)] = info
self.add_feature(fstr, group=False)
groups = {}
trackers = {}
installed = set()
for fkey, info in iteritems(index):
groups.setdefault(info["name"], []).append(fkey)
for feat in info.get("track_features", "").split():
trackers.setdefault(feat, []).append(fkey)
if "link" in info and not fkey.endswith("]"):
installed.add(fkey)
self.groups = groups
self.installed = installed
self.trackers = trackers
self.find_matches_ = {}
self.ms_depends_ = {}
if sort:
for name, group in iteritems(groups):
groups[name] = sorted(group, key=self.version_key, reverse=True)
|
def __init__(self, index, sort=False, processed=False):
self.index = index
if not processed:
for fkey, info in iteritems(index.copy()):
if fkey.endswith("]"):
continue
for fstr in chain(
info.get("features", "").split(),
info.get("track_features", "").split(),
track_features or (),
):
self.add_feature(fstr, group=False)
for fstr in iterkeys(info.get("with_features_depends", {})):
index["%s[%s]" % (fkey, fstr)] = info
self.add_feature(fstr, group=False)
groups = {}
trackers = {}
installed = set()
for fkey, info in iteritems(index):
groups.setdefault(info["name"], []).append(fkey)
for feat in info.get("track_features", "").split():
trackers.setdefault(feat, []).append(fkey)
if "link" in info:
installed.add(fkey)
self.groups = groups
self.installed = installed
self.trackers = trackers
self.find_matches_ = {}
self.ms_depends_ = {}
if sort:
for name, group in iteritems(groups):
groups[name] = sorted(group, key=self.version_key, reverse=True)
|
https://github.com/conda/conda/issues/2570
|
Traceback (most recent call last):
File "/home/ilan/minonda/bin/conda", line 6, in <module>
sys.exit(main())
File "/home/ilan/conda/conda/cli/main.py", line 120, in main
args_func(args, p)
File "/home/ilan/conda/conda/cli/main.py", line 127, in args_func
args.func(args, p)
File "/home/ilan/conda/conda/cli/main_install.py", line 62, in execute
install.install(args, parser, 'install')
File "/home/ilan/conda/conda/cli/install.py", line 394, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/ilan/conda/conda/plan.py", line 555, in execute_actions
inst.execute_instructions(plan, index, verbose)
File "/home/ilan/conda/conda/instructions.py", line 133, in execute_instructions
cmd(state, arg)
File "/home/ilan/conda/conda/instructions.py", line 80, in UNLINK_CMD
install.unlink(state['prefix'], arg)
File "/home/ilan/conda/conda/install.py", line 1075, in unlink
mk_menus(prefix, meta['files'], remove=True)
TypeError: 'NoneType' object has no attribute '__getitem__'
|
TypeError
|
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