metadata
tags:
- protein-sequence-generation
- bioinformatics
- pfam
- ancestral-sequence-reconstruction
- protein-family
license: other
LineageFlow Pfam Assets
This dataset contains the preprocessed Pfam assets used by the released LineageFlow inference pipeline.
Contents
pfam_priors_asr_mad/: family-specific ASR Dirichlet priors.pfam_gap_rates/: family-specific alignment gap statistics.pfam_fastas_clean/: cleaned Pfam family alignments.pfam_pi_smooth_tau0.5_gap060_gt80_020.csv: family sampling distribution.pfam_priors_keep_ids_gap060_gt80_020.txt: family keep list used by the default sampler.
Usage
hf download jinxbye/LineageFlow-assets \
--repo-type dataset \
--local-dir dataset
The inference scripts expect these assets under dataset/ by default. All paths can be overridden from the command line.
Notes
These files are preprocessed from Pfam family alignments. Please follow the license and usage terms of the original Pfam resource when using the data.