| tags: | |
| - protein-sequence-generation | |
| - bioinformatics | |
| - pfam | |
| - ancestral-sequence-reconstruction | |
| - protein-family | |
| license: other | |
| # LineageFlow Pfam Assets | |
| This dataset contains the preprocessed Pfam assets used by the released LineageFlow inference pipeline. | |
| ## Contents | |
| - `pfam_priors_asr_mad/`: family-specific ASR Dirichlet priors. | |
| - `pfam_gap_rates/`: family-specific alignment gap statistics. | |
| - `pfam_fastas_clean/`: cleaned Pfam family alignments. | |
| - `pfam_pi_smooth_tau0.5_gap060_gt80_020.csv`: family sampling distribution. | |
| - `pfam_priors_keep_ids_gap060_gt80_020.txt`: family keep list used by the default sampler. | |
| ## Usage | |
| ```bash | |
| hf download jinxbye/LineageFlow-assets \ | |
| --repo-type dataset \ | |
| --local-dir dataset | |
| ``` | |
| The inference scripts expect these assets under `dataset/` by default. All paths can be overridden from the command line. | |
| ## Notes | |
| These files are preprocessed from Pfam family alignments. Please follow the license and usage terms of the original Pfam resource when using the data. | |