kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def get_series_by_name(self, series_name): """Perform lookup for series :param str series_name: series name found within filename :returns: instance of series :rtype: object """ series = trakt.Trakt['search'].query(series_name, 'show') if not series: ...	[ "def", "get_series_by_name", "(", "self", ",", "series_name", ")", ":", "series", "=", "trakt", ".", "Trakt", "[", "'search'", "]", ".", "query", "(", "series_name", ",", "'show'", ")", "if", "not", "series", ":", "return", "None", ",", "'Not Found'", "r...	33.181818	13.272727
def add_node(self, info): """ Handles adding a Node to the graph. """ if not info.initialized: return graph = self._request_graph(info.ui.control) if graph is None: return IDs = [v.ID for v in graph.nodes] node = Node(ID=make_unique_name...	[ "def", "add_node", "(", "self", ",", "info", ")", ":", "if", "not", "info", ".", "initialized", ":", "return", "graph", "=", "self", ".", "_request_graph", "(", "info", ".", "ui", ".", "control", ")", "if", "graph", "is", "None", ":", "return", "IDs"...	26	19.263158
def __assert_equal(expected, returned, assert_print_result=True): ''' Test if two objects are equal ''' result = "Pass" try: if assert_print_result: assert (expected == returned), "{0} is not equal to {1}".format(expected, returned) else: ...	[ "def", "__assert_equal", "(", "expected", ",", "returned", ",", "assert_print_result", "=", "True", ")", ":", "result", "=", "\"Pass\"", "try", ":", "if", "assert_print_result", ":", "assert", "(", "expected", "==", "returned", ")", ",", "\"{0} is not equal to {...	34.714286	22.714286
def pickle_dump(self): """Save the status of the object in pickle format.""" with open(os.path.join(self.workdir, self.PICKLE_FNAME), mode="wb") as fh: pickle.dump(self, fh)	[ "def", "pickle_dump", "(", "self", ")", ":", "with", "open", "(", "os", ".", "path", ".", "join", "(", "self", ".", "workdir", ",", "self", ".", "PICKLE_FNAME", ")", ",", "mode", "=", "\"wb\"", ")", "as", "fh", ":", "pickle", ".", "dump", "(", "s...	49.5	16.75
def print_defaults(): """Pretty-print the contents of :data:`DEFAULTS`""" maxlen = max([len(x) for x in DEFAULTS]) for key in DEFAULTS: value = DEFAULTS[key] if isinstance(value, (list, set)): value = ', '.join(value) print "%*s: %s" % (maxlen, key, value)	[ "def", "print_defaults", "(", ")", ":", "maxlen", "=", "max", "(", "[", "len", "(", "x", ")", "for", "x", "in", "DEFAULTS", "]", ")", "for", "key", "in", "DEFAULTS", ":", "value", "=", "DEFAULTS", "[", "key", "]", "if", "isinstance", "(", "value", ...	37.125	7.75
def format_tsv_line(source, edge, target, value=None, metadata=None): """ Render a single line for TSV file with data flow described :type source str :type edge str :type target str :type value float :type metadata str :rtype: str """ return '{source}\t{edge}\t{target}\t{value}\...	[ "def", "format_tsv_line", "(", "source", ",", "edge", ",", "target", ",", "value", "=", "None", ",", "metadata", "=", "None", ")", ":", "return", "'{source}\\t{edge}\\t{target}\\t{value}\\t{metadata}'", ".", "format", "(", "source", "=", "source", ",", "edge", ...	28.166667	19.833333
def make_docs(args, *kwargs): """Make the documents for a `Request` or `Reply`. Takes a variety of argument styles, returns a list of dicts. Used by `make_prototype_request` and `make_reply`, which are in turn used by `MockupDB.receives`, `Request.replies`, and so on. See examples in tutorial. ...	[ "def", "make_docs", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "err_msg", "=", "\"Can't interpret args: \"", "if", "not", "args", "and", "not", "kwargs", ":", "return", "[", "]", "if", "not", "args", ":", "# OpReply(ok=1, ismaster=True).", "return"...	31.581818	19.109091
def validate_response(self, iface_name, func_name, resp): """ Validates that the response matches the return type for the function Returns two element tuple: (bool, string) - `bool` - True if valid, False if not - `string` - Description of validation error, or None if valid ...	[ "def", "validate_response", "(", "self", ",", "iface_name", ",", "func_name", ",", "resp", ")", ":", "self", ".", "interface", "(", "iface_name", ")", ".", "function", "(", "func_name", ")", ".", "validate_response", "(", "resp", ")" ]	31.888889	20.666667
def reporter(self): """ Creates .xlsx reports using xlsxwriter """ # Create a workbook to store the report. Using xlsxwriter rather than a simple csv format, as I want to be # able to have appropriately sized, multi-line cells workbook = xlsxwriter.Workbook(os.path.join(s...	[ "def", "reporter", "(", "self", ")", ":", "# Create a workbook to store the report. Using xlsxwriter rather than a simple csv format, as I want to be", "# able to have appropriately sized, multi-line cells", "workbook", "=", "xlsxwriter", ".", "Workbook", "(", "os", ".", "path", "....	57.796296	25.722222
def make_serviceitem_name(name, condition='is', negate=False, preserve_case=False): """ Create a node for ServiceItem/name :return: A IndicatorItem represented as an Element node """ document = 'ServiceItem' search = 'ServiceItem/name' content_type = 'string' content = name ii_n...	[ "def", "make_serviceitem_name", "(", "name", ",", "condition", "=", "'is'", ",", "negate", "=", "False", ",", "preserve_case", "=", "False", ")", ":", "document", "=", "'ServiceItem'", "search", "=", "'ServiceItem/name'", "content_type", "=", "'string'", "conten...	38.923077	21.846154
def get(src_hdfs_path, dest_path, **kwargs): """\ Copy the contents of ``src_hdfs_path`` to ``dest_path``. ``dest_path`` is forced to be interpreted as an ordinary local path (see :func:`~path.abspath`). The source file is opened for reading and the copy is opened for writing. Additional keyword ...	[ "def", "get", "(", "src_hdfs_path", ",", "dest_path", ",", "", "", "kwargs", ")", ":", "cp", "(", "src_hdfs_path", ",", "path", ".", "abspath", "(", "dest_path", ",", "local", "=", "True", ")", ",", "", "", "kwargs", ")" ]	44.2	18.7
def _astoref16(ins): ''' Stores 2º operand content into address of 1st operand. storef16 a, x => (&a) = x ''' output = _addr(ins.quad[1]) value = ins.quad[2] if value[0] == '': value = value[1:] indirect = True else: indirect = False if indirect: outp...	[ "def", "_astoref16", "(", "ins", ")", ":", "output", "=", "_addr", "(", "ins", ".", "quad", "[", "1", "]", ")", "value", "=", "ins", ".", "quad", "[", "2", "]", "if", "value", "[", "0", "]", "==", "'*'", ":", "value", "=", "value", "[", "1", ...	23.92	20.56
def _friends_leaveoneout_radius(points, ftype): """Internal method used to compute the radius (half-side-length) for each ball (cube) used in :class:`RadFriends` (:class:`SupFriends`) using leave-one-out (LOO) cross-validation.""" # Construct KDTree to enable quick nearest-neighbor lookup for # our...	[ "def", "_friends_leaveoneout_radius", "(", "points", ",", "ftype", ")", ":", "# Construct KDTree to enable quick nearest-neighbor lookup for", "# our resampled objects.", "kdtree", "=", "spatial", ".", "KDTree", "(", "points", ")", "if", "ftype", "==", "'balls'", ":", "...	39.947368	22.210526
def ex6_2(n): """ Generate a triangle pulse as described in Example 6-2 of Chapter 6. You need to supply an index array n that covers at least [-2, 5]. The function returns the hard-coded signal of the example. Parameters ---------- n : time index ndarray covering at least -2 ...	[ "def", "ex6_2", "(", "n", ")", ":", "x", "=", "np", ".", "zeros", "(", "len", "(", "n", ")", ")", "for", "k", ",", "nn", "in", "enumerate", "(", "n", ")", ":", "if", "nn", ">=", "-", "2", "and", "nn", "<=", "5", ":", "x", "[", "k", "]",...	25	19.466667
def work_once(self, free_pool_slots=1, max_jobs=None): """ Does one lookup for new jobs, inside the inner work loop """ dequeued_jobs = 0 available_queues = [ queue for queue in self.queues if queue.root_id not in self.paused_queues and queue.id not in self....	[ "def", "work_once", "(", "self", ",", "free_pool_slots", "=", "1", ",", "max_jobs", "=", "None", ")", ":", "dequeued_jobs", "=", "0", "available_queues", "=", "[", "queue", "for", "queue", "in", "self", ".", "queues", "if", "queue", ".", "root_id", "not"...	35.679245	24.320755
def iterativeFetch(query, batchSize=default_batch_size): """ Returns rows of a sql fetch query on demand """ while True: rows = query.fetchmany(batchSize) if not rows: break rowDicts = sqliteRowsToDicts(rows) for rowDict in rowDicts: yield rowDict	[ "def", "iterativeFetch", "(", "query", ",", "batchSize", "=", "default_batch_size", ")", ":", "while", "True", ":", "rows", "=", "query", ".", "fetchmany", "(", "batchSize", ")", "if", "not", "rows", ":", "break", "rowDicts", "=", "sqliteRowsToDicts", "(", ...	28.090909	10.636364
def set_c(a, op, b): """ Given a relational operator, compare two sets of any data type. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/set_c.html :param a: First set. :type a: spiceypy.utils.support_types.SpiceCell :param op: Comparison operator. :type op: str :param b: Secon...	[ "def", "set_c", "(", "a", ",", "op", ",", "b", ")", ":", "assert", "isinstance", "(", "a", ",", "stypes", ".", "SpiceCell", ")", "assert", "isinstance", "(", "b", ",", "stypes", ".", "SpiceCell", ")", "assert", "a", ".", "dtype", "==", "b", ".", ...	33.238095	16.47619
def serialize(self, method="urlencoded", lev=0, **kwargs): """ Convert this instance to another representation. Which representation is given by the choice of serialization method. :param method: A serialization method. Presently 'urlencoded', 'json', 'jwt' and 'dic...	[ "def", "serialize", "(", "self", ",", "method", "=", "\"urlencoded\"", ",", "lev", "=", "0", ",", "", "", "kwargs", ")", ":", "return", "getattr", "(", "self", ",", "\"to_%s\"", "%", "method", ")", "(", "lev", "=", "lev", ",", "", "", "kwargs",...	45.833333	19.333333
def all_mouse_sprites(self): """Returns flat list of the sprite tree for simplified iteration""" def all_recursive(sprites): if not sprites: return for sprite in sprites: if sprite.visible: yield sprite for...	[ "def", "all_mouse_sprites", "(", "self", ")", ":", "def", "all_recursive", "(", "sprites", ")", ":", "if", "not", "sprites", ":", "return", "for", "sprite", "in", "sprites", ":", "if", "sprite", ".", "visible", ":", "yield", "sprite", "for", "child", "in...	32.214286	17.285714
def mock_import(do_not_mock=None, **mock_kwargs): """ Mocks import statements by ignoring ImportErrors and replacing the missing module with a Mock. :param str\|unicode\|list[str\|unicode] do_not_mock: names of modules that should exists, and an ImportError could be raised for. :param mock_kwa...	[ "def", "mock_import", "(", "do_not_mock", "=", "None", ",", "", "", "mock_kwargs", ")", ":", "do_not_mock", "=", "_to_list", "(", "do_not_mock", ")", "def", "try_import", "(", "module_name", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "try", ...	40	20.48
def provides_member_resource(obj): """ Checks if the given type or instance provides the :class:`everest.resources.interfaces.IMemberResource` interface. """ if isinstance(obj, type): obj = object.__new__(obj) return IMemberResource in provided_by(obj)	[ "def", "provides_member_resource", "(", "obj", ")", ":", "if", "isinstance", "(", "obj", ",", "type", ")", ":", "obj", "=", "object", ".", "__new__", "(", "obj", ")", "return", "IMemberResource", "in", "provided_by", "(", "obj", ")" ]	34.625	8.875
def train_encoder(X, y, fold_count, encoder): """ Defines folds and performs the data preprocessing (categorical encoding, NaN imputation, normalization) Returns a list with {X_train, y_train, X_test, y_test}, average fit_encoder_time and average score_encoder_time Note: We normalize all features (not ...	[ "def", "train_encoder", "(", "X", ",", "y", ",", "fold_count", ",", "encoder", ")", ":", "kf", "=", "StratifiedKFold", "(", "n_splits", "=", "fold_count", ",", "shuffle", "=", "True", ",", "random_state", "=", "2001", ")", "encoder", "=", "deepcopy", "("...	44.704545	27.613636
def is_callable_tag(tag): """ Determine whether :tag: is a valid callable string tag. String is assumed to be valid callable if it starts with '{{' and ends with '}}'. :param tag: String name of tag. """ return (isinstance(tag, six.string_types) and tag.strip().startswith('{{') and...	[ "def", "is_callable_tag", "(", "tag", ")", ":", "return", "(", "isinstance", "(", "tag", ",", "six", ".", "string_types", ")", "and", "tag", ".", "strip", "(", ")", ".", "startswith", "(", "'{{'", ")", "and", "tag", ".", "strip", "(", ")", ".", "en...	31.818182	14.181818
def get_ns2nts(results, fldnames=None, kws): """Get namedtuples of GOEA results, split into BP, MF, CC.""" ns2nts = cx.defaultdict(list) nts = MgrNtGOEAs(results).get_goea_nts_all(fldnames, kws) for ntgoea in nts: ns2nts[ntgoea.NS].append(ntgoea) return ns2nts	[ "def", "get_ns2nts", "(", "results", ",", "fldnames", "=", "None", ",", "", "", "kws", ")", ":", "ns2nts", "=", "cx", ".", "defaultdict", "(", "list", ")", "nts", "=", "MgrNtGOEAs", "(", "results", ")", ".", "get_goea_nts_all", "(", "fldnames", ",", ...	44.285714	10.428571
def sync_imports( self, quiet = False ): """Return a context manager to control imports onto all the engines in the underlying cluster. This method is used within a ``with`` statement. Any imports should be done with no experiments running, otherwise the method will block until the clus...	[ "def", "sync_imports", "(", "self", ",", "quiet", "=", "False", ")", ":", "self", ".", "open", "(", ")", "return", "self", ".", "_client", "[", ":", "]", ".", "sync_imports", "(", "quiet", "=", "quiet", ")" ]	50.857143	26.214286
def same_cell(c): """Return True if all Mentions in the given candidate are from the same Cell. :param c: The candidate whose Mentions are being compared :rtype: boolean """ return all( _to_span(c[i]).sentence.cell is not None and _to_span(c[i]).sentence.cell == _to_span(c[0]).sente...	[ "def", "same_cell", "(", "c", ")", ":", "return", "all", "(", "_to_span", "(", "c", "[", "i", "]", ")", ".", "sentence", ".", "cell", "is", "not", "None", "and", "_to_span", "(", "c", "[", "i", "]", ")", ".", "sentence", ".", "cell", "==", "_to...	32.272727	19.545455
def MD_restrained(dirname='MD_POSRES', *kwargs): """Set up MD with position restraints. Additional itp files should be in the same directory as the top file. Many of the keyword arguments below already have sensible values. Note that setting mainselection* = ``None`` will disable many of the automat...	[ "def", "MD_restrained", "(", "dirname", "=", "'MD_POSRES'", ",", "", "", "kwargs", ")", ":", "logger", ".", "info", "(", "\"[{dirname!s}] Setting up MD with position restraints...\"", ".", "format", "(", "", "", "vars", "(", ")", ")", ")", "kwargs", ".", ...	43.244898	23.112245
def note(self, info): """Record some info to the report. :param info: Dictionary of info to record. Note that previous info recorded under the same keys will not be overwritten. """ if self.recording: if self.notes is None: raise ValueError("This repo...	[ "def", "note", "(", "self", ",", "info", ")", ":", "if", "self", ".", "recording", ":", "if", "self", ".", "notes", "is", "None", ":", "raise", "ValueError", "(", "\"This report has already been submitted\"", ")", "self", ".", "notes", ".", "extend", "(", ...	39.4	17.9
def object_present(container, name, path, profile): ''' Ensures a object is presnt. :param container: Container name :type container: ``str`` :param name: Object name in cloud :type name: ``str`` :param path: Local path to file :type path: ``str`` :param profile: The profile k...	[ "def", "object_present", "(", "container", ",", "name", ",", "path", ",", "profile", ")", ":", "existing_object", "=", "__salt__", "[", "'libcloud_storage.get_container_object'", "]", "(", "container", ",", "name", ",", "profile", ")", "if", "existing_object", "...	32.181818	23.454545
def db_set_indexing(cls, is_indexing, impl, working_dir): """ Set lockfile path as to whether or not the system is indexing. NOT THREAD SAFE, USE ONLY FOR CRASH DETECTION. """ indexing_lockfile_path = config.get_lockfile_filename(impl, working_dir) if is_indexing: ...	[ "def", "db_set_indexing", "(", "cls", ",", "is_indexing", ",", "impl", ",", "working_dir", ")", ":", "indexing_lockfile_path", "=", "config", ".", "get_lockfile_filename", "(", "impl", ",", "working_dir", ")", "if", "is_indexing", ":", "# make sure this exists", "...	33.882353	17.764706
def get_email_domain(emailaddr): """ Return the domain component of an email address. Returns None if the provided string cannot be parsed as an email address. >>> get_email_domain('test@example.com') 'example.com' >>> get_email_domain('test+trailing@example.com') 'example.com' >>> get_...	[ "def", "get_email_domain", "(", "emailaddr", ")", ":", "realname", ",", "address", "=", "email", ".", "utils", ".", "parseaddr", "(", "emailaddr", ")", "try", ":", "username", ",", "domain", "=", "address", ".", "split", "(", "'@'", ")", "if", "not", "...	30.52	15.56
def _pearson_correlation(self, imgs_to_decode): """ Decode images using Pearson's r. Computes the correlation between each input image and each feature image across voxels. Args: imgs_to_decode: An ndarray of images to decode, with voxels in rows and images ...	[ "def", "_pearson_correlation", "(", "self", ",", "imgs_to_decode", ")", ":", "x", ",", "y", "=", "imgs_to_decode", ".", "astype", "(", "float", ")", ",", "self", ".", "feature_images", ".", "astype", "(", "float", ")", "return", "self", ".", "_xy_corr", ...	37.941176	23.058824
def revnet(name, x, hparams, reverse=True): """'hparams.depth' steps of generative flow. Args: name: variable scope for the revnet block. x: 4-D Tensor, shape=(NHWC). hparams: HParams. reverse: bool, forward or backward pass. Returns: x: 4-D Tensor, shape=(NHWC). objective: float. """ ...	[ "def", "revnet", "(", "name", ",", "x", ",", "hparams", ",", "reverse", "=", "True", ")", ":", "with", "tf", ".", "variable_scope", "(", "name", ",", "reuse", "=", "tf", ".", "AUTO_REUSE", ")", ":", "steps", "=", "np", ".", "arange", "(", "hparams"...	27	15.913043
def websafe_dither(self): """Return the two websafe colors nearest to this one. Returns: A tuple of two grapefruit.Color instances which are the two web safe colors closest this one. >>> c = Color.from_rgb(1.0, 0.45, 0.0) >>> c1, c2 = c.websafe_dither() >>> c1 Color(1.0, 0.4, 0.0, ...	[ "def", "websafe_dither", "(", "self", ")", ":", "return", "(", "Color", "(", "rgb_to_websafe", "(", "*", "self", ".", "__rgb", ")", ",", "'rgb'", ",", "self", ".", "__a", ",", "self", ".", "__wref", ")", ",", "Color", "(", "rgb_to_websafe", "(", "alt...	29.111111	21
def invert_relation(self, relation): """ Invert or deinvert relation. """ if self.is_relation_inverted(relation): rel = self._deinversions.get(relation, relation[:-3]) else: rel = self._inversions.get(relation, relation + '-of') if rel is None: ...	[ "def", "invert_relation", "(", "self", ",", "relation", ")", ":", "if", "self", ".", "is_relation_inverted", "(", "relation", ")", ":", "rel", "=", "self", ".", "_deinversions", ".", "get", "(", "relation", ",", "relation", "[", ":", "-", "3", "]", ")"...	33.846154	14.923077
def _find_matching_instance(cache_key): """Find a running TensorBoard instance compatible with the cache key. Returns: A `TensorBoardInfo` object, or `None` if none matches the cache key. """ infos = get_all() candidates = [info for info in infos if info.cache_key == cache_key] for candidate in sorted(...	[ "def", "_find_matching_instance", "(", "cache_key", ")", ":", "infos", "=", "get_all", "(", ")", "candidates", "=", "[", "info", "for", "info", "in", "infos", "if", "info", ".", "cache_key", "==", "cache_key", "]", "for", "candidate", "in", "sorted", "(", ...	37.5	21
def parse_200_row(row: list) -> NmiDetails: """ Parse NMI data details record (200) """ return NmiDetails(row[1], row[2], row[3], row[4], row[5], row[6], row[7], int(row[8]), parse_datetime(row[9]))	[ "def", "parse_200_row", "(", "row", ":", "list", ")", "->", "NmiDetails", ":", "return", "NmiDetails", "(", "row", "[", "1", "]", ",", "row", "[", "2", "]", ",", "row", "[", "3", "]", ",", "row", "[", "4", "]", ",", "row", "[", "5", "]", ",",...	57	15.25
def get_current(cls): """Get the context for the current env, if there is one. Returns: `ResolvedContext`: Current context, or None if not in a resolved env. """ filepath = os.getenv("REZ_RXT_FILE") if not filepath or not os.path.exists(filepath): return ...	[ "def", "get_current", "(", "cls", ")", ":", "filepath", "=", "os", ".", "getenv", "(", "\"REZ_RXT_FILE\"", ")", "if", "not", "filepath", "or", "not", "os", ".", "path", ".", "exists", "(", "filepath", ")", ":", "return", "None", "return", "cls", ".", ...	31.727273	18.909091
def setEmissionClass(self, typeID, clazz): """setEmissionClass(string, string) -> None Sets the emission class of vehicles of this type. """ self._connection._sendStringCmd( tc.CMD_SET_VEHICLETYPE_VARIABLE, tc.VAR_EMISSIONCLASS, typeID, clazz)	[ "def", "setEmissionClass", "(", "self", ",", "typeID", ",", "clazz", ")", ":", "self", ".", "_connection", ".", "_sendStringCmd", "(", "tc", ".", "CMD_SET_VEHICLETYPE_VARIABLE", ",", "tc", ".", "VAR_EMISSIONCLASS", ",", "typeID", ",", "clazz", ")" ]	40.285714	14.285714
def ssh_client(host): """Start an ssh client. :param host: the host :type host: str :returns: ssh client :rtype: Paramiko client """ ssh = paramiko.SSHClient() ssh.set_missing_host_key_policy(paramiko.AutoAddPolicy()) ssh.connect(host) return ssh	[ "def", "ssh_client", "(", "host", ")", ":", "ssh", "=", "paramiko", ".", "SSHClient", "(", ")", "ssh", ".", "set_missing_host_key_policy", "(", "paramiko", ".", "AutoAddPolicy", "(", ")", ")", "ssh", ".", "connect", "(", "host", ")", "return", "ssh" ]	23	16.666667
def get_unread_topics(self, topics, user): """ Returns a list of unread topics for the given user from a given set of topics. """ unread_topics = [] # A user which is not authenticated will never see a topic as unread. # If there are no topics to consider, we stop here. if not u...	[ "def", "get_unread_topics", "(", "self", ",", "topics", ",", "user", ")", ":", "unread_topics", "=", "[", "]", "# A user which is not authenticated will never see a topic as unread.", "# If there are no topics to consider, we stop here.", "if", "not", "user", ".", "is_authent...	47.755556	26.244444
def _start_managers(self): """ (internal) starts input and output pool queue manager threads. """ self._task_queue = _Weave(self._tasks, self.stride) # here we determine the size of the maximum memory consumption self._semaphore_value = (self.buffer or (len(self._tasks) *...	[ "def", "_start_managers", "(", "self", ")", ":", "self", ".", "_task_queue", "=", "_Weave", "(", "self", ".", "_tasks", ",", "self", ".", "stride", ")", "# here we determine the size of the maximum memory consumption", "self", ".", "_semaphore_value", "=", "(", "s...	44.458333	19.708333
def _get_disk_size(self, device): ''' Get a size of a disk. ''' out = __salt__['cmd.run_all']("df {0}".format(device)) if out['retcode']: msg = "Disk size info error: {0}".format(out['stderr']) log.error(msg) raise SIException(msg) dev...	[ "def", "_get_disk_size", "(", "self", ",", "device", ")", ":", "out", "=", "__salt__", "[", "'cmd.run_all'", "]", "(", "\"df {0}\"", ".", "format", "(", "device", ")", ")", "if", "out", "[", "'retcode'", "]", ":", "msg", "=", "\"Disk size info error: {0}\"...	41.25	26.875
def get_os_version_codename(codename, version_map=OPENSTACK_CODENAMES): '''Determine OpenStack version number from codename.''' for k, v in six.iteritems(version_map): if v == codename: return k e = 'Could not derive OpenStack version for '\ 'codename: %s' % codename error_ou...	[ "def", "get_os_version_codename", "(", "codename", ",", "version_map", "=", "OPENSTACK_CODENAMES", ")", ":", "for", "k", ",", "v", "in", "six", ".", "iteritems", "(", "version_map", ")", ":", "if", "v", "==", "codename", ":", "return", "k", "e", "=", "'C...	39.625	16.125
def getcloud(site, feed_id=None): """ Returns the tag cloud for a site or a site's subscriber. """ cloudict = fjcache.cache_get(site.id, 'tagclouds') if not cloudict: cloudict = cloudata(site) fjcache.cache_set(site, 'tagclouds', cloudict) # A subscriber's tag cloud has been requested. if feed_id: feed_id...	[ "def", "getcloud", "(", "site", ",", "feed_id", "=", "None", ")", ":", "cloudict", "=", "fjcache", ".", "cache_get", "(", "site", ".", "id", ",", "'tagclouds'", ")", "if", "not", "cloudict", ":", "cloudict", "=", "cloudata", "(", "site", ")", "fjcache"...	26.235294	15.941176
def add_transaction(self, transaction): # type: (ProposedTransaction) -> None """ Adds a transaction to the bundle. If the transaction message is too long, it will be split automatically into multiple transactions. """ if self.hash: raise RuntimeError...	[ "def", "add_transaction", "(", "self", ",", "transaction", ")", ":", "# type: (ProposedTransaction) -> None", "if", "self", ".", "hash", ":", "raise", "RuntimeError", "(", "'Bundle is already finalized.'", ")", "if", "transaction", ".", "value", "<", "0", ":", "ra...	35.416667	16.916667
def _get_end_event(parser, tagName): """Check that the next event is the end of a particular XML tag.""" (event, node) = six.next(parser) if event != pulldom.END_ELEMENT or node.tagName != tagName: raise ParseError( 'Expecting %s end tag, got %s %s' % (tagName, event, node.tagName))	[ "def", "_get_end_event", "(", "parser", ",", "tagName", ")", ":", "(", "event", ",", "node", ")", "=", "six", ".", "next", "(", "parser", ")", "if", "event", "!=", "pulldom", ".", "END_ELEMENT", "or", "node", ".", "tagName", "!=", "tagName", ":", "ra...	38.75	20.625
def wait_not(method, timeout, fail_on_timeout=None, kwargs): """ Wait ``timeout`` seconds until ``method(kwargs)`` returns a ``value`` that not value==True. Returns last ``value``. If time expired and ``fail_on_timeout`` specified, then raise TimeoutException. :param method: :param timeo...	[ "def", "wait_not", "(", "method", ",", "timeout", ",", "fail_on_timeout", "=", "None", ",", "", "", "kwargs", ")", ":", "return", "Waiter", "(", "lambda", "value", ":", "not", "value", ")", ".", "start", "(", "method", ",", "timeout", ",", "fail_on_t...	36.307692	25.846154
def crawl_ax(self, ax): """Crawl the axes and process all elements within""" with self.renderer.draw_axes(ax=ax, props=utils.get_axes_properties(ax)): for line in ax.lines: self.draw_line(ax, line) for text in ax.texts: ...	[ "def", "crawl_ax", "(", "self", ",", "ax", ")", ":", "with", "self", ".", "renderer", ".", "draw_axes", "(", "ax", "=", "ax", ",", "props", "=", "utils", ".", "get_axes_properties", "(", "ax", ")", ")", ":", "for", "line", "in", "ax", ".", "lines",...	47.2	12.733333
def PyDbLite_to_csv(src,dest=None,dialect='excel'): """Convert a PyDbLite base to a CSV file src is the PyDbLite.Base instance dest is the file-like object for the CSV output dialect is the same as in csv module""" import csv fieldnames = ["__id__","__version__"]+src.fields if dest is...	[ "def", "PyDbLite_to_csv", "(", "src", ",", "dest", "=", "None", ",", "dialect", "=", "'excel'", ")", ":", "import", "csv", "fieldnames", "=", "[", "\"__id__\"", ",", "\"__version__\"", "]", "+", "src", ".", "fields", "if", "dest", "is", "None", ":", "d...	38.470588	12.294118
def validate_usage(self, key_usage, extended_key_usage=None, extended_optional=False): """ Validates the certificate path and that the certificate is valid for the key usage and extended key usage purposes specified. :param key_usage: A set of unicode strings of the required...	[ "def", "validate_usage", "(", "self", ",", "key_usage", ",", "extended_key_usage", "=", "None", ",", "extended_optional", "=", "False", ")", ":", "self", ".", "_validate_path", "(", ")", "validate_usage", "(", "self", ".", "_context", ",", "self", ".", "_cer...	34.064516	21.483871
def at_time(cls, at, target): """ Construct a DelayedCommand to come due at `at`, where `at` may be a datetime or timestamp. """ at = cls._from_timestamp(at) cmd = cls.from_datetime(at) cmd.delay = at - now() cmd.target = target return cmd	[ "def", "at_time", "(", "cls", ",", "at", ",", "target", ")", ":", "at", "=", "cls", ".", "_from_timestamp", "(", "at", ")", "cmd", "=", "cls", ".", "from_datetime", "(", "at", ")", "cmd", ".", "delay", "=", "at", "-", "now", "(", ")", "cmd", "....	30.2	10.6
def hash_coloured(text): """Return a ANSI coloured text based on its hash""" ansi_code = int(sha256(text.encode('utf-8')).hexdigest(), 16) % 230 return colored(text, ansi_code=ansi_code)	[ "def", "hash_coloured", "(", "text", ")", ":", "ansi_code", "=", "int", "(", "sha256", "(", "text", ".", "encode", "(", "'utf-8'", ")", ")", ".", "hexdigest", "(", ")", ",", "16", ")", "%", "230", "return", "colored", "(", "text", ",", "ansi_code", ...	48.75	13
def _meters_per_pixel(zoom, lat=0.0, tilesize=256): """ Return the pixel resolution for a given mercator tile zoom and lattitude. Parameters ---------- zoom: int Mercator zoom level lat: float, optional Latitude in decimal degree (default: 0) tilesize: int, optional ...	[ "def", "_meters_per_pixel", "(", "zoom", ",", "lat", "=", "0.0", ",", "tilesize", "=", "256", ")", ":", "return", "(", "math", ".", "cos", "(", "lat", "", "math", ".", "pi", "/", "180.0", ")", "", "2", "", "math", ".", "pi", "", "6378137", ...	24.142857	21.190476
def _R2deriv(self,R,z,phi=0.,t=0.): """ NAME: _Rderiv PURPOSE: evaluate the second radial derivative for this potential INPUT: R - Galactocentric cylindrical radius z - vertical height phi - azimuth t - time OUTPUT...	[ "def", "_R2deriv", "(", "self", ",", "R", ",", "z", ",", "phi", "=", "0.", ",", "t", "=", "0.", ")", ":", "return", "1.", "/", "(", "R", "", "2.", "+", "z", "", "2.", ")", "**", "(", "self", ".", "alpha", "/", "2.", ")", "-", "self", ...	29.555556	15.111111
def get_id(self): """Converts a User ID and parts of a User password hash to a token.""" # This function is used by Flask-Login to store a User ID securely as a browser cookie. # The last part of the password is included to invalidate tokens when password change. # user_id and password_...	[ "def", "get_id", "(", "self", ")", ":", "# This function is used by Flask-Login to store a User ID securely as a browser cookie.", "# The last part of the password is included to invalidate tokens when password change.", "# user_id and password_ends_with are encrypted, timestamped and signed.", "#...	51	28.058824
def _query(lamp_id, state, action='', method='GET'): ''' Query the URI :return: ''' # Because salt.utils.query is that dreadful... :( err = None url = "{0}/lights{1}".format(CONFIG['uri'], lamp_id and '/{0}'.format(lamp_id) or '') \ + (action and ...	[ "def", "_query", "(", "lamp_id", ",", "state", ",", "action", "=", "''", ",", "method", "=", "'GET'", ")", ":", "# Because salt.utils.query is that dreadful... :(", "err", "=", "None", "url", "=", "\"{0}/lights{1}\"", ".", "format", "(", "CONFIG", "[", "'uri'"...	28.25	22.678571
def is_deprecated(cls, label, datacenter=None): """Check if image if flagged as deprecated.""" images = cls.list(datacenter, label) images_visibility = dict([(image['label'], image['visibility']) for image in images]) return images_visibility.get(label, ...	[ "def", "is_deprecated", "(", "cls", ",", "label", ",", "datacenter", "=", "None", ")", ":", "images", "=", "cls", ".", "list", "(", "datacenter", ",", "label", ")", "images_visibility", "=", "dict", "(", "[", "(", "image", "[", "'label'", "]", ",", "...	56.166667	13.833333
def taskFailed(self, args, *kwargs): """ Task Failed Messages When a task ran, but failed to complete successfully a message is posted to this exchange. This is same as worker ran task-specific code, but the task specific code exited non-zero. This exchange outputs: `...	[ "def", "taskFailed", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "ref", "=", "{", "'exchange'", ":", "'task-failed'", ",", "'name'", ":", "'taskFailed'", ",", "'routingKey'", ":", "[", "{", "'constant'", ":", "'primary'", ",", "'m...	35.375	23.525
def remove(self, index): ''' Delete one or more relationship, by index, from the extent index - either a single index or a list of indices ''' raise NotImplementedError if hasattr(index, '__iter__'): ind = set(index) else: ind = [index] ...	[ "def", "remove", "(", "self", ",", "index", ")", ":", "raise", "NotImplementedError", "if", "hasattr", "(", "index", ",", "'__iter__'", ")", ":", "ind", "=", "set", "(", "index", ")", "else", ":", "ind", "=", "[", "index", "]", "# Rebuild relationships, ...	33	24
def wire(self): """ Returns (Register, int) tuple where the int is the index of the wire else None """ if self.data_dict['type'] not in ['in', 'out']: raise QiskitError('The node %s is not an input/output node' % str(self)) return self.data_dict.get('wire')	[ "def", "wire", "(", "self", ")", ":", "if", "self", ".", "data_dict", "[", "'type'", "]", "not", "in", "[", "'in'", ",", "'out'", "]", ":", "raise", "QiskitError", "(", "'The node %s is not an input/output node'", "%", "str", "(", "self", ")", ")", "retu...	38.75	15.75
def from_maps(*maps): """ Creates a new AnyValueMap by merging two or more maps. Maps defined later in the list override values from previously defined maps. :param maps: an array of maps to be merged :return: a newly created AnyValueMap. """ result = StringValu...	[ "def", "from_maps", "(", "*", "maps", ")", ":", "result", "=", "StringValueMap", "(", ")", "if", "maps", "==", "None", "or", "len", "(", "maps", ")", "==", "0", ":", "return", "result", "for", "map", "in", "maps", ":", "for", "(", "k", ",", "v", ...	27.95	18.45
def mean_squared_error(output, target, is_mean=False, name="mean_squared_error"): """Return the TensorFlow expression of mean-square-error (L2) of two batch of data. Parameters ---------- output : Tensor 2D, 3D or 4D tensor i.e. [batch_size, n_feature], [batch_size, height, width] or [batch_siz...	[ "def", "mean_squared_error", "(", "output", ",", "target", ",", "is_mean", "=", "False", ",", "name", "=", "\"mean_squared_error\"", ")", ":", "# with tf.name_scope(name):", "if", "output", ".", "get_shape", "(", ")", ".", "ndims", "==", "2", ":", "# [batch_si...	46.425	32.025
def load(cls, partname, content_type, blob, package): """ Called by ``docx.opc.package.PartFactory`` to load an image part from a package being opened by ``Document(...)`` call. """ return cls(partname, content_type, blob)	[ "def", "load", "(", "cls", ",", "partname", ",", "content_type", ",", "blob", ",", "package", ")", ":", "return", "cls", "(", "partname", ",", "content_type", ",", "blob", ")" ]	42.833333	12.5
def parallel_bulk( client, actions, thread_count=4, chunk_size=500, max_chunk_bytes=100 * 1024 * 1024, queue_size=4, expand_action_callback=expand_action, args, *kwargs ): """ Parallel version of the bulk helper run in multiple threads at once. :arg client: instance of...	[ "def", "parallel_bulk", "(", "client", ",", "actions", ",", "thread_count", "=", "4", ",", "chunk_size", "=", "500", ",", "max_chunk_bytes", "=", "100", "", "1024", "", "1024", ",", "queue_size", "=", "4", ",", "expand_action_callback", "=", "expand_action...	38.548387	24
def _run_once(self): """Run once, should be called only from loop()""" try: self.do_wait() self._execute_wakeup_tasks() self._trigger_timers() except Exception as e: Log.error("Error occured during _run_once(): " + str(e)) Log.error(traceback.format_exc()) self.should_exi...	[ "def", "_run_once", "(", "self", ")", ":", "try", ":", "self", ".", "do_wait", "(", ")", "self", ".", "_execute_wakeup_tasks", "(", ")", "self", ".", "_trigger_timers", "(", ")", "except", "Exception", "as", "e", ":", "Log", ".", "error", "(", "\"Error...	31.9	13.8
def new(cls, password, rounds): """Creates a PasswordHash from the given password.""" if isinstance(password, str): password = password.encode('utf-8') return cls(cls._new(password, rounds))	[ "def", "new", "(", "cls", ",", "password", ",", "rounds", ")", ":", "if", "isinstance", "(", "password", ",", "str", ")", ":", "password", "=", "password", ".", "encode", "(", "'utf-8'", ")", "return", "cls", "(", "cls", ".", "_new", "(", "password",...	44.4	5
def discover(self, metafile): """ Determine what summary stats, time series, and CDF csv exist for the reports that need to be diffed. :return: boolean: return whether the summary stats / time series / CDF csv summary was successfully located """ for report in self.reports: if report.remote_lo...	[ "def", "discover", "(", "self", ",", "metafile", ")", ":", "for", "report", "in", "self", ".", "reports", ":", "if", "report", ".", "remote_location", "==", "'local'", ":", "if", "naarad", ".", "utils", ".", "is_valid_file", "(", "os", ".", "path", "."...	51.054054	25.378378
def filter(fastq, sam, paired = False): """ filter sequences that are shown to be mapped in the sam file reads not in sam file are in .filtered.fastq reads that are in the sam file are in .matched.fastq """ if paired is False: list = sam_list(sam) else: list = sam_list_paired(sam) if paired is False: f...	[ "def", "filter", "(", "fastq", ",", "sam", ",", "paired", "=", "False", ")", ":", "if", "paired", "is", "False", ":", "list", "=", "sam_list", "(", "sam", ")", "else", ":", "list", "=", "sam_list_paired", "(", "sam", ")", "if", "paired", "is", "Fal...	26.642857	14.142857
def get_expression_target(expression: Expression, expr_vars: InheritedDict) -> BindingTarget: '''Factory method to create expression target''' root = expression.get_object_tree() if len(root.children) != 1 or not PROPERTY_EXPRESSION_REGEX.fullmatch(expression.code): error = BindingError('Expression ...	[ "def", "get_expression_target", "(", "expression", ":", "Expression", ",", "expr_vars", ":", "InheritedDict", ")", "->", "BindingTarget", ":", "root", "=", "expression", ".", "get_object_tree", "(", ")", "if", "len", "(", "root", ".", "children", ")", "!=", ...	57.5	23.3
def predict(self, X): """ Assign classes to test data. Parameters ---------- X : array Test data, of dimension N times d (rows are examples, columns are data dimensions) Returns ------- y_predicted : array A vector of ...	[ "def", "predict", "(", "self", ",", "X", ")", ":", "predictions_proba", "=", "self", ".", "predict_proba", "(", "X", ")", "predictions", "=", "[", "]", "allclasses", "=", "copy", ".", "copy", "(", "self", ".", "classes", ")", "allclasses", ".", "append...	36.555556	19.444444
def abbreviate_dashed(s): """Abbreviates each part of string that is delimited by a '-'.""" r = [] for part in s.split('-'): r.append(abbreviate(part)) return '-'.join(r)	[ "def", "abbreviate_dashed", "(", "s", ")", ":", "r", "=", "[", "]", "for", "part", "in", "s", ".", "split", "(", "'-'", ")", ":", "r", ".", "append", "(", "abbreviate", "(", "part", ")", ")", "return", "'-'", ".", "join", "(", "r", ")" ]	31.5	13.333333
def spline_interpolate(x_axis, y_axis, x_new_axis): """Interpolate a y = f(x) function using Spline interpolation algorithm, x_new_axis has to be in range of x_axis. `Spline interpolation <https://en.wikipedia.org/wiki/Spline_interpolation>`_ is a popular interpolation method. Way more accurate than l...	[ "def", "spline_interpolate", "(", "x_axis", ",", "y_axis", ",", "x_new_axis", ")", ":", "f", "=", "interp1d", "(", "x_axis", ",", "y_axis", ",", "kind", "=", "\"cubic\"", ")", "return", "f", "(", "x_new_axis", ")" ]	42.3	18.3
def pylxd_save_object(obj): ''' Saves an object (profile/image/container) and translate its execpetion on failure obj : The object to save This is an internal method, no CLI Example. ''' try: obj.save() except pylxd.exceptions.LXDAPIException as e: raise Command...	[ "def", "pylxd_save_object", "(", "obj", ")", ":", "try", ":", "obj", ".", "save", "(", ")", "except", "pylxd", ".", "exceptions", ".", "LXDAPIException", "as", "e", ":", "raise", "CommandExecutionError", "(", "six", ".", "text_type", "(", "e", ")", ")", ...	23.666667	22.333333
def get_ip_by_equip_and_vip(self, equip_name, id_evip): """ Get a available IP in the Equipment related Environment VIP :param equip_name: Equipment Name. :param id_evip: Vip environment identifier. Integer value and greater than zero. :return: Dictionary with the following str...	[ "def", "get_ip_by_equip_and_vip", "(", "self", ",", "equip_name", ",", "id_evip", ")", ":", "if", "not", "is_valid_int_param", "(", "id_evip", ")", ":", "raise", "InvalidParameterError", "(", "u'Vip environment is invalid or was not informed.'", ")", "ip_map", "=", "d...	41.8	29.514286
def _reset(cls): """If we have forked since the watch dictionaries were initialized, all that has is garbage, so clear it.""" if os.getpid() != cls._cls_pid: cls._cls_pid = os.getpid() cls._cls_instances_by_target.clear() cls._cls_thread_by_target.clear()	[ "def", "_reset", "(", "cls", ")", ":", "if", "os", ".", "getpid", "(", ")", "!=", "cls", ".", "_cls_pid", ":", "cls", ".", "_cls_pid", "=", "os", ".", "getpid", "(", ")", "cls", ".", "_cls_instances_by_target", ".", "clear", "(", ")", "cls", ".", ...	44.142857	5.714286
def transpose(self, name=None): """Returns matching `Conv2DTranspose` module. Args: name: Optional string assigning name of transpose module. The default name is constructed by appending "_transpose" to `self.name`. Returns: `Conv2DTranspose` module. Raises: base.NotSupported...	[ "def", "transpose", "(", "self", ",", "name", "=", "None", ")", ":", "if", "any", "(", "x", ">", "1", "for", "x", "in", "self", ".", "_rate", ")", ":", "raise", "base", ".", "NotSupportedError", "(", "\"Cannot transpose a dilated convolution module.\"", ")...	37.651163	19.046512
def save_stack(stack): """ Saves a stack object to a flatfile. :param caliendo.hooks.CallStack stack: The stack to save. """ global CACHE_ serialized = pickle.dumps(stack, PPROT) CACHE_['stacks']["{0}.{1}".format(stack.module, stack.caller)] = serialized write_out()	[ "def", "save_stack", "(", "stack", ")", ":", "global", "CACHE_", "serialized", "=", "pickle", ".", "dumps", "(", "stack", ",", "PPROT", ")", "CACHE_", "[", "'stacks'", "]", "[", "\"{0}.{1}\"", ".", "format", "(", "stack", ".", "module", ",", "stack", "...	26.363636	19.090909
def get_property(self): """Establishes access of Property values""" prop = super(File, self).get_property() # scope is the Property instance scope = self def fdel(self): """Set value to utils.undefined on delete""" if self._get(scope.name) is not None: ...	[ "def", "get_property", "(", "self", ")", ":", "prop", "=", "super", "(", "File", ",", "self", ")", ".", "get_property", "(", ")", "# scope is the Property instance", "scope", "=", "self", "def", "fdel", "(", "self", ")", ":", "\"\"\"Set value to utils.undefine...	31.647059	17.235294
def add_handler(self, handler): ''' Add an additional handler Args: handler: A dictionary of handler configuration for the handler that should be added. See :func:`__init__` for details on valid parameters. ''' handler['logger'...	[ "def", "add_handler", "(", "self", ",", "handler", ")", ":", "handler", "[", "'logger'", "]", "=", "self", ".", "_get_logger", "(", "handler", ")", "handler", "[", "'reads'", "]", "=", "0", "handler", "[", "'data_read'", "]", "=", "0", "self", ".", "...	31.785714	19.214286
def compute_forward_returns(factor, prices, periods=(1, 5, 10), filter_zscore=None, cumulative_returns=True): """ Finds the N period forward returns (as percent change) for each asset provided. ...	[ "def", "compute_forward_returns", "(", "factor", ",", "prices", ",", "periods", "=", "(", "1", ",", "5", ",", "10", ")", ",", "filter_zscore", "=", "None", ",", "cumulative_returns", "=", "True", ")", ":", "factor_dateindex", "=", "factor", ".", "index", ...	38.325581	21.829457
def edit(self, data_src, value): """ Edit data layer. :param data_src: Name of :class:`DataSource` to edit. :type data_src: str :param value: Values to edit. :type value: dict """ # check if opening file if 'filename' in value: items =...	[ "def", "edit", "(", "self", ",", "data_src", ",", "value", ")", ":", "# check if opening file", "if", "'filename'", "in", "value", ":", "items", "=", "[", "k", "for", "k", ",", "v", "in", "self", ".", "reg", ".", "data_source", ".", "iteritems", "(", ...	36.647059	13.941176
def make_reports(self, stats, old_stats): """render registered reports""" sect = Section("Report", "%s statements analysed." % (self.stats["statement"])) for checker in self.report_order(): for reportid, r_title, r_cb in self._reports[checker]: if not self.report_is_e...	[ "def", "make_reports", "(", "self", ",", "stats", ",", "old_stats", ")", ":", "sect", "=", "Section", "(", "\"Report\"", ",", "\"%s statements analysed.\"", "%", "(", "self", ".", "stats", "[", "\"statement\"", "]", ")", ")", "for", "checker", "in", "self"...	43.733333	12.466667
def temporary_attr(obj, name, value): """ Context manager that removes key from dictionary on closing The dictionary will hold the key for the duration of the context. Parameters ---------- obj : object Object onto which to add a temporary attribute. name : str Name of ...	[ "def", "temporary_attr", "(", "obj", ",", "name", ",", "value", ")", ":", "setattr", "(", "obj", ",", "name", ",", "value", ")", "try", ":", "yield", "obj", "finally", ":", "delattr", "(", "obj", ",", "name", ")" ]	22.809524	19.571429
def _create(self): """ Create new object on IxNetwork. :return: IXN object reference. """ if 'name' in self._data: obj_ref = self.api.add(self.obj_parent(), self.obj_type(), name=self.obj_name()) else: obj_ref = self.api.add(self.obj_parent(), self.obj_t...	[ "def", "_create", "(", "self", ")", ":", "if", "'name'", "in", "self", ".", "_data", ":", "obj_ref", "=", "self", ".", "api", ".", "add", "(", "self", ".", "obj_parent", "(", ")", ",", "self", ".", "obj_type", "(", ")", ",", "name", "=", "self", ...	31.916667	19.75
def from_blob(cls, blob, stage=0): """:return: Minimal entry resembling the given blob object""" time = pack(">LL", 0, 0) return IndexEntry((blob.mode, blob.binsha, stage << CE_STAGESHIFT, blob.path, time, time, 0, 0, 0, 0, blob.size))	[ "def", "from_blob", "(", "cls", ",", "blob", ",", "stage", "=", "0", ")", ":", "time", "=", "pack", "(", "\">LL\"", ",", "0", ",", "0", ")", "return", "IndexEntry", "(", "(", "blob", ".", "mode", ",", "blob", ".", "binsha", ",", "stage", "<<", ...	56.4	16.2
def create_filter(extended, from_id, to_id, rtr_only, rtr_too): """ Calculates AMR and ACR using CAN-ID as parameter. :param bool extended: if True parameters from_id and to_id contains 29-bit CAN-ID :param int from_id: first CAN-ID which should be received ...	[ "def", "create_filter", "(", "extended", ",", "from_id", ",", "to_id", ",", "rtr_only", ",", "rtr_too", ")", ":", "return", "[", "{", "\"can_id\"", ":", "Ucan", ".", "calculate_acr", "(", "extended", ",", "from_id", ",", "to_id", ",", "rtr_only", ",", "r...	36.076923	26.230769
def load(self,filename): """ entry point load the pest control file. sniffs the first non-comment line to detect the version (if present) Parameters ---------- filename : str pst filename Raises ------ lots of exceptions for incorrect format ...	[ "def", "load", "(", "self", ",", "filename", ")", ":", "assert", "os", ".", "path", ".", "exists", "(", "filename", ")", ",", "\"couldn't find control file {0}\"", ".", "format", "(", "filename", ")", "f", "=", "open", "(", "filename", ",", "'r'", ")", ...	36.027027	21.594595
def check_child_validity(self, child): """Check validity of passed child object The method is called by state child objects (transitions, data flows) when these are initialized or changed. The method checks the type of the child and then checks its validity in the context of the state. ...	[ "def", "check_child_validity", "(", "self", ",", "child", ")", ":", "# First let the state do validity checks for outcomes and data ports", "valid", ",", "message", "=", "super", "(", "ContainerState", ",", "self", ")", ".", "check_child_validity", "(", "child", ")", ...	55.952381	26.571429
def printStatistics(completion, concordance, tpedSamples, oldSamples, prefix): """Print the statistics in a file. :param completion: the completion of each duplicated samples. :param concordance: the concordance of each duplicated samples. :param tpedSamples: the updated position of the samples in the ...	[ "def", "printStatistics", "(", "completion", ",", "concordance", ",", "tpedSamples", ",", "oldSamples", ",", "prefix", ")", ":", "# Compute the completion percentage on none zero values", "none_zero_indexes", "=", "np", ".", "where", "(", "completion", "[", "1", "]", ...	39.666667	21.448718
def health_state(consul_url=None, token=None, state=None, **kwargs): ''' Returns the checks in the state provided on the path. :param consul_url: The Consul server URL. :param state: The state to show checks for. The supported states are any, unknown, passing, warning, or critical. ...	[ "def", "health_state", "(", "consul_url", "=", "None", ",", "token", "=", "None", ",", "state", "=", "None", ",", "", "", "kwargs", ")", ":", "ret", "=", "{", "}", "query_params", "=", "{", "}", "if", "not", "consul_url", ":", "consul_url", "=", ...	32.408163	22.734694
def internal_tally(self): """Store the trace of stochastics for the computation of the covariance. This trace is completely independent from the backend used by the sampler to store the samples.""" chain = [] for stochastic in self.stochastics: chain.append(np.ravel(s...	[ "def", "internal_tally", "(", "self", ")", ":", "chain", "=", "[", "]", "for", "stochastic", "in", "self", ".", "stochastics", ":", "chain", ".", "append", "(", "np", ".", "ravel", "(", "stochastic", ".", "value", ")", ")", "self", ".", "_trace", "."...	47.5	11.75
def delete(self, bucket, key, extra_args=None, subscribers=None): """Delete an S3 object. :type bucket: str :param bucket: The name of the bucket. :type key: str :param key: The name of the S3 object to delete. :type extra_args: dict :param extra_args: Extra ar...	[ "def", "delete", "(", "self", ",", "bucket", ",", "key", ",", "extra_args", "=", "None", ",", "subscribers", "=", "None", ")", ":", "if", "extra_args", "is", "None", ":", "extra_args", "=", "{", "}", "if", "subscribers", "is", "None", ":", "subscribers...	35.0625	20.8125
def cross_validation_models(self): """ Obtain a list of cross-validation models. :returns: list of H2OModel objects. """ cvmodels = self._model_json["output"]["cross_validation_models"] if cvmodels is None: return None m = [] for p in cvmodels: m.append(h...	[ "def", "cross_validation_models", "(", "self", ")", ":", "cvmodels", "=", "self", ".", "_model_json", "[", "\"output\"", "]", "[", "\"cross_validation_models\"", "]", "if", "cvmodels", "is", "None", ":", "return", "None", "m", "=", "[", "]", "for", "p", "i...	31.909091	14.636364
def make_kdtree(ra, decl): '''This makes a `scipy.spatial.CKDTree` on (`ra`, `decl`). Parameters ---------- ra,decl : array-like The right ascension and declination coordinate pairs in decimal degrees. Returns ------- `scipy.spatial.CKDTree` The cKDTRee object generated b...	[ "def", "make_kdtree", "(", "ra", ",", "decl", ")", ":", "# get the xyz unit vectors from ra,decl", "# since i had to remind myself:", "# https://en.wikipedia.org/wiki/Equatorial_coordinate_system", "cosdecl", "=", "np", ".", "cos", "(", "np", ".", "radians", "(", "decl", ...	26.677419	23.322581
def delete(self, adjustEstimate=None, newEstimate=None, increaseBy=None): """Delete this worklog entry from its associated issue. :param adjustEstimate: one of ``new``, ``leave``, ``manual`` or ``auto``. ``auto`` is the default and adjusts the estimate automatically. ``leave`` l...	[ "def", "delete", "(", "self", ",", "adjustEstimate", "=", "None", ",", "newEstimate", "=", "None", ",", "increaseBy", "=", "None", ")", ":", "params", "=", "{", "}", "if", "adjustEstimate", "is", "not", "None", ":", "params", "[", "'adjustEstimate'", "]"...	49.777778	22.777778
def decode(buff): """ Transforms the raw buffer data read in into a list of bytes """ pp = list(map(ord, buff)) if 0 == len(pp) == 1: pp = [] return pp	[ "def", "decode", "(", "buff", ")", ":", "pp", "=", "list", "(", "map", "(", "ord", ",", "buff", ")", ")", "if", "0", "==", "len", "(", "pp", ")", "==", "1", ":", "pp", "=", "[", "]", "return", "pp" ]	19.875	16.625
def json_or_jsonp(func): """Wrap response in JSON or JSONP style""" @wraps(func) def _(args, kwargs): mimetype = 'application/javascript' callback = request.args.get('callback', None) if callback is None: content = func(args, **kwargs) else: conte...	[ "def", "json_or_jsonp", "(", "func", ")", ":", "@", "wraps", "(", "func", ")", "def", "_", "(", "", "args", ",", "", "*", "kwargs", ")", ":", "mimetype", "=", "'application/javascript'", "callback", "=", "request", ".", "args", ".", "get", "(", "'c...	33.846154	18
def _init_client(self, from_archive=False): """Init client""" return DockerHubClient(archive=self.archive, from_archive=from_archive)	[ "def", "_init_client", "(", "self", ",", "from_archive", "=", "False", ")", ":", "return", "DockerHubClient", "(", "archive", "=", "self", ".", "archive", ",", "from_archive", "=", "from_archive", ")" ]	36.75	20.5
def _get_names_part(self, part): """Get some part of the "N" entry in the vCard as a list :param part: the name to get e.g. "prefix" or "given" :type part: str :returns: a list of entries for this name part :rtype: list(str) """ try: the_list = getat...	[ "def", "_get_names_part", "(", "self", ",", "part", ")", ":", "try", ":", "the_list", "=", "getattr", "(", "self", ".", "vcard", ".", "n", ".", "value", ",", "part", ")", "except", "AttributeError", ":", "return", "[", "]", "else", ":", "# check if lis...	32.666667	17.611111

def get_series_by_name(self, series_name): """Perform lookup for series :param str series_name: series name found within filename :returns: instance of series :rtype: object """ series = trakt.Trakt['search'].query(series_name, 'show') if not series: ...

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33.181818

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def add_node(self, info): """ Handles adding a Node to the graph. """ if not info.initialized: return graph = self._request_graph(info.ui.control) if graph is None: return IDs = [v.ID for v in graph.nodes] node = Node(ID=make_unique_name...

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def __assert_equal(expected, returned, assert_print_result=True): ''' Test if two objects are equal ''' result = "Pass" try: if assert_print_result: assert (expected == returned), "{0} is not equal to {1}".format(expected, returned) else: ...

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def pickle_dump(self): """Save the status of the object in pickle format.""" with open(os.path.join(self.workdir, self.PICKLE_FNAME), mode="wb") as fh: pickle.dump(self, fh)

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def print_defaults(): """Pretty-print the contents of :data:`DEFAULTS`""" maxlen = max([len(x) for x in DEFAULTS]) for key in DEFAULTS: value = DEFAULTS[key] if isinstance(value, (list, set)): value = ', '.join(value) print "%*s: %s" % (maxlen, key, value)

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def format_tsv_line(source, edge, target, value=None, metadata=None): """ Render a single line for TSV file with data flow described :type source str :type edge str :type target str :type value float :type metadata str :rtype: str """ return '{source}\t{edge}\t{target}\t{value}\...

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28.166667

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def make_docs(*args, **kwargs): """Make the documents for a `Request` or `Reply`. Takes a variety of argument styles, returns a list of dicts. Used by `make_prototype_request` and `make_reply`, which are in turn used by `MockupDB.receives`, `Request.replies`, and so on. See examples in tutorial. ...

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31.581818

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def validate_response(self, iface_name, func_name, resp): """ Validates that the response matches the return type for the function Returns two element tuple: (bool, string) - `bool` - True if valid, False if not - `string` - Description of validation error, or None if valid ...

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31.888889

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def reporter(self): """ Creates .xlsx reports using xlsxwriter """ # Create a workbook to store the report. Using xlsxwriter rather than a simple csv format, as I want to be # able to have appropriately sized, multi-line cells workbook = xlsxwriter.Workbook(os.path.join(s...

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57.796296

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def make_serviceitem_name(name, condition='is', negate=False, preserve_case=False): """ Create a node for ServiceItem/name :return: A IndicatorItem represented as an Element node """ document = 'ServiceItem' search = 'ServiceItem/name' content_type = 'string' content = name ii_n...

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38.923077

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def get(src_hdfs_path, dest_path, **kwargs): """\ Copy the contents of ``src_hdfs_path`` to ``dest_path``. ``dest_path`` is forced to be interpreted as an ordinary local path (see :func:`~path.abspath`). The source file is opened for reading and the copy is opened for writing. Additional keyword ...

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44.2

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def _astoref16(ins): ''' Stores 2º operand content into address of 1st operand. storef16 a, x => *(&a) = x ''' output = _addr(ins.quad[1]) value = ins.quad[2] if value[0] == '*': value = value[1:] indirect = True else: indirect = False if indirect: outp...

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23.92

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def _friends_leaveoneout_radius(points, ftype): """Internal method used to compute the radius (half-side-length) for each ball (cube) used in :class:`RadFriends` (:class:`SupFriends`) using leave-one-out (LOO) cross-validation.""" # Construct KDTree to enable quick nearest-neighbor lookup for # our...

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39.947368

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def ex6_2(n): """ Generate a triangle pulse as described in Example 6-2 of Chapter 6. You need to supply an index array n that covers at least [-2, 5]. The function returns the hard-coded signal of the example. Parameters ---------- n : time index ndarray covering at least -2 ...

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def work_once(self, free_pool_slots=1, max_jobs=None): """ Does one lookup for new jobs, inside the inner work loop """ dequeued_jobs = 0 available_queues = [ queue for queue in self.queues if queue.root_id not in self.paused_queues and queue.id not in self....

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35.679245

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def iterativeFetch(query, batchSize=default_batch_size): """ Returns rows of a sql fetch query on demand """ while True: rows = query.fetchmany(batchSize) if not rows: break rowDicts = sqliteRowsToDicts(rows) for rowDict in rowDicts: yield rowDict

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def set_c(a, op, b): """ Given a relational operator, compare two sets of any data type. http://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/set_c.html :param a: First set. :type a: spiceypy.utils.support_types.SpiceCell :param op: Comparison operator. :type op: str :param b: Secon...

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33.238095

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def serialize(self, method="urlencoded", lev=0, **kwargs): """ Convert this instance to another representation. Which representation is given by the choice of serialization method. :param method: A serialization method. Presently 'urlencoded', 'json', 'jwt' and 'dic...

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45.833333

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def all_mouse_sprites(self): """Returns flat list of the sprite tree for simplified iteration""" def all_recursive(sprites): if not sprites: return for sprite in sprites: if sprite.visible: yield sprite for...

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def mock_import(do_not_mock=None, **mock_kwargs): """ Mocks import statements by ignoring ImportErrors and replacing the missing module with a Mock. :param str|unicode|list[str|unicode] do_not_mock: names of modules that should exists, and an ImportError could be raised for. :param mock_kwa...

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def provides_member_resource(obj): """ Checks if the given type or instance provides the :class:`everest.resources.interfaces.IMemberResource` interface. """ if isinstance(obj, type): obj = object.__new__(obj) return IMemberResource in provided_by(obj)

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34.625

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def train_encoder(X, y, fold_count, encoder): """ Defines folds and performs the data preprocessing (categorical encoding, NaN imputation, normalization) Returns a list with {X_train, y_train, X_test, y_test}, average fit_encoder_time and average score_encoder_time Note: We normalize all features (not ...

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44.704545

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def is_callable_tag(tag): """ Determine whether :tag: is a valid callable string tag. String is assumed to be valid callable if it starts with '{{' and ends with '}}'. :param tag: String name of tag. """ return (isinstance(tag, six.string_types) and tag.strip().startswith('{{') and...

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31.818182

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def get_ns2nts(results, fldnames=None, **kws): """Get namedtuples of GOEA results, split into BP, MF, CC.""" ns2nts = cx.defaultdict(list) nts = MgrNtGOEAs(results).get_goea_nts_all(fldnames, **kws) for ntgoea in nts: ns2nts[ntgoea.NS].append(ntgoea) return ns2nts

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44.285714

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def sync_imports( self, quiet = False ): """Return a context manager to control imports onto all the engines in the underlying cluster. This method is used within a ``with`` statement. Any imports should be done with no experiments running, otherwise the method will block until the clus...

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50.857143

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def same_cell(c): """Return True if all Mentions in the given candidate are from the same Cell. :param c: The candidate whose Mentions are being compared :rtype: boolean """ return all( _to_span(c[i]).sentence.cell is not None and _to_span(c[i]).sentence.cell == _to_span(c[0]).sente...

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32.272727

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def MD_restrained(dirname='MD_POSRES', **kwargs): """Set up MD with position restraints. Additional itp files should be in the same directory as the top file. Many of the keyword arguments below already have sensible values. Note that setting *mainselection* = ``None`` will disable many of the automat...

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def note(self, info): """Record some info to the report. :param info: Dictionary of info to record. Note that previous info recorded under the same keys will not be overwritten. """ if self.recording: if self.notes is None: raise ValueError("This repo...

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def object_present(container, name, path, profile): ''' Ensures a object is presnt. :param container: Container name :type container: ``str`` :param name: Object name in cloud :type name: ``str`` :param path: Local path to file :type path: ``str`` :param profile: The profile k...

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def db_set_indexing(cls, is_indexing, impl, working_dir): """ Set lockfile path as to whether or not the system is indexing. NOT THREAD SAFE, USE ONLY FOR CRASH DETECTION. """ indexing_lockfile_path = config.get_lockfile_filename(impl, working_dir) if is_indexing: ...

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def get_email_domain(emailaddr): """ Return the domain component of an email address. Returns None if the provided string cannot be parsed as an email address. >>> get_email_domain('test@example.com') 'example.com' >>> get_email_domain('test+trailing@example.com') 'example.com' >>> get_...

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def _pearson_correlation(self, imgs_to_decode): """ Decode images using Pearson's r. Computes the correlation between each input image and each feature image across voxels. Args: imgs_to_decode: An ndarray of images to decode, with voxels in rows and images ...

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def revnet(name, x, hparams, reverse=True): """'hparams.depth' steps of generative flow. Args: name: variable scope for the revnet block. x: 4-D Tensor, shape=(NHWC). hparams: HParams. reverse: bool, forward or backward pass. Returns: x: 4-D Tensor, shape=(NHWC). objective: float. """ ...

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def websafe_dither(self): """Return the two websafe colors nearest to this one. Returns: A tuple of two grapefruit.Color instances which are the two web safe colors closest this one. >>> c = Color.from_rgb(1.0, 0.45, 0.0) >>> c1, c2 = c.websafe_dither() >>> c1 Color(1.0, 0.4, 0.0, ...

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def invert_relation(self, relation): """ Invert or deinvert *relation*. """ if self.is_relation_inverted(relation): rel = self._deinversions.get(relation, relation[:-3]) else: rel = self._inversions.get(relation, relation + '-of') if rel is None: ...

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33.846154

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def _find_matching_instance(cache_key): """Find a running TensorBoard instance compatible with the cache key. Returns: A `TensorBoardInfo` object, or `None` if none matches the cache key. """ infos = get_all() candidates = [info for info in infos if info.cache_key == cache_key] for candidate in sorted(...

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def parse_200_row(row: list) -> NmiDetails: """ Parse NMI data details record (200) """ return NmiDetails(row[1], row[2], row[3], row[4], row[5], row[6], row[7], int(row[8]), parse_datetime(row[9]))

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57

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def get_current(cls): """Get the context for the current env, if there is one. Returns: `ResolvedContext`: Current context, or None if not in a resolved env. """ filepath = os.getenv("REZ_RXT_FILE") if not filepath or not os.path.exists(filepath): return ...

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31.727273

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def setEmissionClass(self, typeID, clazz): """setEmissionClass(string, string) -> None Sets the emission class of vehicles of this type. """ self._connection._sendStringCmd( tc.CMD_SET_VEHICLETYPE_VARIABLE, tc.VAR_EMISSIONCLASS, typeID, clazz)

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40.285714

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def ssh_client(host): """Start an ssh client. :param host: the host :type host: str :returns: ssh client :rtype: Paramiko client """ ssh = paramiko.SSHClient() ssh.set_missing_host_key_policy(paramiko.AutoAddPolicy()) ssh.connect(host) return ssh

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23

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def get_unread_topics(self, topics, user): """ Returns a list of unread topics for the given user from a given set of topics. """ unread_topics = [] # A user which is not authenticated will never see a topic as unread. # If there are no topics to consider, we stop here. if not u...

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47.755556

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def _start_managers(self): """ (internal) starts input and output pool queue manager threads. """ self._task_queue = _Weave(self._tasks, self.stride) # here we determine the size of the maximum memory consumption self._semaphore_value = (self.buffer or (len(self._tasks) *...

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44.458333

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def _get_disk_size(self, device): ''' Get a size of a disk. ''' out = __salt__['cmd.run_all']("df {0}".format(device)) if out['retcode']: msg = "Disk size info error: {0}".format(out['stderr']) log.error(msg) raise SIException(msg) dev...

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41.25

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def get_os_version_codename(codename, version_map=OPENSTACK_CODENAMES): '''Determine OpenStack version number from codename.''' for k, v in six.iteritems(version_map): if v == codename: return k e = 'Could not derive OpenStack version for '\ 'codename: %s' % codename error_ou...

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def getcloud(site, feed_id=None): """ Returns the tag cloud for a site or a site's subscriber. """ cloudict = fjcache.cache_get(site.id, 'tagclouds') if not cloudict: cloudict = cloudata(site) fjcache.cache_set(site, 'tagclouds', cloudict) # A subscriber's tag cloud has been requested. if feed_id: feed_id...

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def add_transaction(self, transaction): # type: (ProposedTransaction) -> None """ Adds a transaction to the bundle. If the transaction message is too long, it will be split automatically into multiple transactions. """ if self.hash: raise RuntimeError...

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def _get_end_event(parser, tagName): """Check that the next event is the end of a particular XML tag.""" (event, node) = six.next(parser) if event != pulldom.END_ELEMENT or node.tagName != tagName: raise ParseError( 'Expecting %s end tag, got %s %s' % (tagName, event, node.tagName))

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38.75

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def wait_not(method, timeout, fail_on_timeout=None, **kwargs): """ Wait ``timeout`` seconds until ``method(**kwargs)`` returns a ``value`` that *not value==True*. Returns last ``value``. If time expired and ``fail_on_timeout`` specified, then raise TimeoutException. :param method: :param timeo...

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def crawl_ax(self, ax): """Crawl the axes and process all elements within""" with self.renderer.draw_axes(ax=ax, props=utils.get_axes_properties(ax)): for line in ax.lines: self.draw_line(ax, line) for text in ax.texts: ...

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47.2

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def PyDbLite_to_csv(src,dest=None,dialect='excel'): """Convert a PyDbLite base to a CSV file src is the PyDbLite.Base instance dest is the file-like object for the CSV output dialect is the same as in csv module""" import csv fieldnames = ["__id__","__version__"]+src.fields if dest is...

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def validate_usage(self, key_usage, extended_key_usage=None, extended_optional=False): """ Validates the certificate path and that the certificate is valid for the key usage and extended key usage purposes specified. :param key_usage: A set of unicode strings of the required...

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34.064516

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def at_time(cls, at, target): """ Construct a DelayedCommand to come due at `at`, where `at` may be a datetime or timestamp. """ at = cls._from_timestamp(at) cmd = cls.from_datetime(at) cmd.delay = at - now() cmd.target = target return cmd

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30.2

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def hash_coloured(text): """Return a ANSI coloured text based on its hash""" ansi_code = int(sha256(text.encode('utf-8')).hexdigest(), 16) % 230 return colored(text, ansi_code=ansi_code)

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48.75

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def _meters_per_pixel(zoom, lat=0.0, tilesize=256): """ Return the pixel resolution for a given mercator tile zoom and lattitude. Parameters ---------- zoom: int Mercator zoom level lat: float, optional Latitude in decimal degree (default: 0) tilesize: int, optional ...

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24.142857

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def _R2deriv(self,R,z,phi=0.,t=0.): """ NAME: _Rderiv PURPOSE: evaluate the second radial derivative for this potential INPUT: R - Galactocentric cylindrical radius z - vertical height phi - azimuth t - time OUTPUT...

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29.555556

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def get_id(self): """Converts a User ID and parts of a User password hash to a token.""" # This function is used by Flask-Login to store a User ID securely as a browser cookie. # The last part of the password is included to invalidate tokens when password change. # user_id and password_...

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51

28.058824

def _query(lamp_id, state, action='', method='GET'): ''' Query the URI :return: ''' # Because salt.utils.query is that dreadful... :( err = None url = "{0}/lights{1}".format(CONFIG['uri'], lamp_id and '/{0}'.format(lamp_id) or '') \ + (action and ...

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28.25

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def is_deprecated(cls, label, datacenter=None): """Check if image if flagged as deprecated.""" images = cls.list(datacenter, label) images_visibility = dict([(image['label'], image['visibility']) for image in images]) return images_visibility.get(label, ...

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56.166667

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def taskFailed(self, *args, **kwargs): """ Task Failed Messages When a task ran, but failed to complete successfully a message is posted to this exchange. This is same as worker ran task-specific code, but the task specific code exited non-zero. This exchange outputs: `...

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35.375

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def remove(self, index): ''' Delete one or more relationship, by index, from the extent index - either a single index or a list of indices ''' raise NotImplementedError if hasattr(index, '__iter__'): ind = set(index) else: ind = [index] ...

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33

24

def wire(self): """ Returns (Register, int) tuple where the int is the index of the wire else None """ if self.data_dict['type'] not in ['in', 'out']: raise QiskitError('The node %s is not an input/output node' % str(self)) return self.data_dict.get('wire')

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38.75

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def from_maps(*maps): """ Creates a new AnyValueMap by merging two or more maps. Maps defined later in the list override values from previously defined maps. :param maps: an array of maps to be merged :return: a newly created AnyValueMap. """ result = StringValu...

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27.95

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def mean_squared_error(output, target, is_mean=False, name="mean_squared_error"): """Return the TensorFlow expression of mean-square-error (L2) of two batch of data. Parameters ---------- output : Tensor 2D, 3D or 4D tensor i.e. [batch_size, n_feature], [batch_size, height, width] or [batch_siz...

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46.425

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def load(cls, partname, content_type, blob, package): """ Called by ``docx.opc.package.PartFactory`` to load an image part from a package being opened by ``Document(...)`` call. """ return cls(partname, content_type, blob)

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42.833333

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def parallel_bulk( client, actions, thread_count=4, chunk_size=500, max_chunk_bytes=100 * 1024 * 1024, queue_size=4, expand_action_callback=expand_action, *args, **kwargs ): """ Parallel version of the bulk helper run in multiple threads at once. :arg client: instance of...

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38.548387

24

def _run_once(self): """Run once, should be called only from loop()""" try: self.do_wait() self._execute_wakeup_tasks() self._trigger_timers() except Exception as e: Log.error("Error occured during _run_once(): " + str(e)) Log.error(traceback.format_exc()) self.should_exi...

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31.9

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def new(cls, password, rounds): """Creates a PasswordHash from the given password.""" if isinstance(password, str): password = password.encode('utf-8') return cls(cls._new(password, rounds))

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44.4

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def discover(self, metafile): """ Determine what summary stats, time series, and CDF csv exist for the reports that need to be diffed. :return: boolean: return whether the summary stats / time series / CDF csv summary was successfully located """ for report in self.reports: if report.remote_lo...

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def filter(fastq, sam, paired = False): """ filter sequences that are shown to be mapped in the sam file reads not in sam file are in *.filtered.fastq reads that are in the sam file are in *.matched.fastq """ if paired is False: list = sam_list(sam) else: list = sam_list_paired(sam) if paired is False: f...

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26.642857

14.142857

def get_expression_target(expression: Expression, expr_vars: InheritedDict) -> BindingTarget: '''Factory method to create expression target''' root = expression.get_object_tree() if len(root.children) != 1 or not PROPERTY_EXPRESSION_REGEX.fullmatch(expression.code): error = BindingError('Expression ...

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57.5

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def predict(self, X): """ Assign classes to test data. Parameters ---------- X : array Test data, of dimension N times d (rows are examples, columns are data dimensions) Returns ------- y_predicted : array A vector of ...

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def abbreviate_dashed(s): """Abbreviates each part of string that is delimited by a '-'.""" r = [] for part in s.split('-'): r.append(abbreviate(part)) return '-'.join(r)

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31.5

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def spline_interpolate(x_axis, y_axis, x_new_axis): """Interpolate a y = f(x) function using Spline interpolation algorithm, x_new_axis has to be in range of x_axis. `Spline interpolation <https://en.wikipedia.org/wiki/Spline_interpolation>`_ is a popular interpolation method. Way more accurate than l...

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42.3

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def pylxd_save_object(obj): ''' Saves an object (profile/image/container) and translate its execpetion on failure obj : The object to save This is an internal method, no CLI Example. ''' try: obj.save() except pylxd.exceptions.LXDAPIException as e: raise Command...

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def get_ip_by_equip_and_vip(self, equip_name, id_evip): """ Get a available IP in the Equipment related Environment VIP :param equip_name: Equipment Name. :param id_evip: Vip environment identifier. Integer value and greater than zero. :return: Dictionary with the following str...

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41.8

29.514286

def _reset(cls): """If we have forked since the watch dictionaries were initialized, all that has is garbage, so clear it.""" if os.getpid() != cls._cls_pid: cls._cls_pid = os.getpid() cls._cls_instances_by_target.clear() cls._cls_thread_by_target.clear()

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44.142857

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def transpose(self, name=None): """Returns matching `Conv2DTranspose` module. Args: name: Optional string assigning name of transpose module. The default name is constructed by appending "_transpose" to `self.name`. Returns: `Conv2DTranspose` module. Raises: base.NotSupported...

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def save_stack(stack): """ Saves a stack object to a flatfile. :param caliendo.hooks.CallStack stack: The stack to save. """ global CACHE_ serialized = pickle.dumps(stack, PPROT) CACHE_['stacks']["{0}.{1}".format(stack.module, stack.caller)] = serialized write_out()

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26.363636

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def get_property(self): """Establishes access of Property values""" prop = super(File, self).get_property() # scope is the Property instance scope = self def fdel(self): """Set value to utils.undefined on delete""" if self._get(scope.name) is not None: ...

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31.647059

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def add_handler(self, handler): ''' Add an additional handler Args: handler: A dictionary of handler configuration for the handler that should be added. See :func:`__init__` for details on valid parameters. ''' handler['logger'...

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31.785714

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def compute_forward_returns(factor, prices, periods=(1, 5, 10), filter_zscore=None, cumulative_returns=True): """ Finds the N period forward returns (as percent change) for each asset provided. ...

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38.325581

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def edit(self, data_src, value): """ Edit data layer. :param data_src: Name of :class:`DataSource` to edit. :type data_src: str :param value: Values to edit. :type value: dict """ # check if opening file if 'filename' in value: items =...

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36.647059

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def make_reports(self, stats, old_stats): """render registered reports""" sect = Section("Report", "%s statements analysed." % (self.stats["statement"])) for checker in self.report_order(): for reportid, r_title, r_cb in self._reports[checker]: if not self.report_is_e...

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43.733333

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def temporary_attr(obj, name, value): """ Context manager that removes key from dictionary on closing The dictionary will hold the key for the duration of the context. Parameters ---------- obj : object Object onto which to add a temporary attribute. name : str Name of ...

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22.809524

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def _create(self): """ Create new object on IxNetwork. :return: IXN object reference. """ if 'name' in self._data: obj_ref = self.api.add(self.obj_parent(), self.obj_type(), name=self.obj_name()) else: obj_ref = self.api.add(self.obj_parent(), self.obj_t...

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31.916667

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def from_blob(cls, blob, stage=0): """:return: Minimal entry resembling the given blob object""" time = pack(">LL", 0, 0) return IndexEntry((blob.mode, blob.binsha, stage << CE_STAGESHIFT, blob.path, time, time, 0, 0, 0, 0, blob.size))

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56.4

16.2

def create_filter(extended, from_id, to_id, rtr_only, rtr_too): """ Calculates AMR and ACR using CAN-ID as parameter. :param bool extended: if True parameters from_id and to_id contains 29-bit CAN-ID :param int from_id: first CAN-ID which should be received ...

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36.076923

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def load(self,filename): """ entry point load the pest control file. sniffs the first non-comment line to detect the version (if present) Parameters ---------- filename : str pst filename Raises ------ lots of exceptions for incorrect format ...

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36.027027

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def check_child_validity(self, child): """Check validity of passed child object The method is called by state child objects (transitions, data flows) when these are initialized or changed. The method checks the type of the child and then checks its validity in the context of the state. ...

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55.952381

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def printStatistics(completion, concordance, tpedSamples, oldSamples, prefix): """Print the statistics in a file. :param completion: the completion of each duplicated samples. :param concordance: the concordance of each duplicated samples. :param tpedSamples: the updated position of the samples in the ...

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39.666667

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def health_state(consul_url=None, token=None, state=None, **kwargs): ''' Returns the checks in the state provided on the path. :param consul_url: The Consul server URL. :param state: The state to show checks for. The supported states are any, unknown, passing, warning, or critical. ...

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32.408163

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def internal_tally(self): """Store the trace of stochastics for the computation of the covariance. This trace is completely independent from the backend used by the sampler to store the samples.""" chain = [] for stochastic in self.stochastics: chain.append(np.ravel(s...

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47.5

11.75

def delete(self, bucket, key, extra_args=None, subscribers=None): """Delete an S3 object. :type bucket: str :param bucket: The name of the bucket. :type key: str :param key: The name of the S3 object to delete. :type extra_args: dict :param extra_args: Extra ar...

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35.0625

20.8125

def cross_validation_models(self): """ Obtain a list of cross-validation models. :returns: list of H2OModel objects. """ cvmodels = self._model_json["output"]["cross_validation_models"] if cvmodels is None: return None m = [] for p in cvmodels: m.append(h...

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31.909091

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def make_kdtree(ra, decl): '''This makes a `scipy.spatial.CKDTree` on (`ra`, `decl`). Parameters ---------- ra,decl : array-like The right ascension and declination coordinate pairs in decimal degrees. Returns ------- `scipy.spatial.CKDTree` The cKDTRee object generated b...

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26.677419

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def delete(self, adjustEstimate=None, newEstimate=None, increaseBy=None): """Delete this worklog entry from its associated issue. :param adjustEstimate: one of ``new``, ``leave``, ``manual`` or ``auto``. ``auto`` is the default and adjusts the estimate automatically. ``leave`` l...

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49.777778

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def decode(buff): """ Transforms the raw buffer data read in into a list of bytes """ pp = list(map(ord, buff)) if 0 == len(pp) == 1: pp = [] return pp

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19.875

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def json_or_jsonp(func): """Wrap response in JSON or JSONP style""" @wraps(func) def _(*args, **kwargs): mimetype = 'application/javascript' callback = request.args.get('callback', None) if callback is None: content = func(*args, **kwargs) else: conte...

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33.846154

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def _init_client(self, from_archive=False): """Init client""" return DockerHubClient(archive=self.archive, from_archive=from_archive)

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36.75

20.5

def _get_names_part(self, part): """Get some part of the "N" entry in the vCard as a list :param part: the name to get e.g. "prefix" or "given" :type part: str :returns: a list of entries for this name part :rtype: list(str) """ try: the_list = getat...

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32.666667

17.611111