kejian/codesearchnet-python-linelen40-full

text stringlengths 89 104k	code_tokens list	avg_line_len float64 7.91 980	score float64 0 630
def _format_lon(self, lon): ''' Returned a formated longitude format for the file ''' if self.ppd in [4, 16, 64, 128]: return None else: return map(lambda x: "{0:0>3}".format(int(x)), self._map_center('long', lon))	[ "def", "_format_lon", "(", "self", ",", "lon", ")", ":", "if", "self", ".", "ppd", "in", "[", "4", ",", "16", ",", "64", ",", "128", "]", ":", "return", "None", "else", ":", "return", "map", "(", "lambda", "x", ":", "\"{0:0>3}\"", ".", "format", ...	42.833333	21.833333
def decryption_statem(self, ciphertext_in, key_in, reset): """ Builds a multiple cycle AES Decryption state machine circuit :param reset: a one bit signal telling the state machine to reset and accept the current plaintext and key :return ready, plain_text: ready is a one bit ...	[ "def", "decryption_statem", "(", "self", ",", "ciphertext_in", ",", "key_in", ",", "reset", ")", ":", "if", "len", "(", "key_in", ")", "!=", "len", "(", "ciphertext_in", ")", ":", "raise", "pyrtl", ".", "PyrtlError", "(", "\"AES key and ciphertext should be th...	39.054545	20.290909
def setEnabled(self, state): """ Updates the drop shadow effect for this widget on enable/disable state change. :param state \| <bool> """ super(XToolButton, self).setEnabled(state) self.updateUi()	[ "def", "setEnabled", "(", "self", ",", "state", ")", ":", "super", "(", "XToolButton", ",", "self", ")", ".", "setEnabled", "(", "state", ")", "self", ".", "updateUi", "(", ")" ]	27.5	15.7
def copy(self): """ Prepare and paste self templates. """ templates = self.prepare_templates() if self.params.interactive: keys = list(self.parser.default) for key in keys: if key.startswith('_'): continue prompt = "{0} ...	[ "def", "copy", "(", "self", ")", ":", "templates", "=", "self", ".", "prepare_templates", "(", ")", "if", "self", ".", "params", ".", "interactive", ":", "keys", "=", "list", "(", "self", ".", "parser", ".", "default", ")", "for", "key", "in", "keys"...	36.875	17.09375
def SETE(cpu, dest): """ Sets byte if equal. :param cpu: current CPU. :param dest: destination operand. """ dest.write(Operators.ITEBV(dest.size, cpu.ZF, 1, 0))	[ "def", "SETE", "(", "cpu", ",", "dest", ")", ":", "dest", ".", "write", "(", "Operators", ".", "ITEBV", "(", "dest", ".", "size", ",", "cpu", ".", "ZF", ",", "1", ",", "0", ")", ")" ]	25.25	12.75
def _uminumaxvmin(self,args,*kwargs): """ NAME: _uminumaxvmin PURPOSE: evaluate u_min, u_max, and v_min INPUT: Either: a) R,vR,vT,z,vz b) Orbit instance: initial condition used if that's it, orbit(t) if there...	[ "def", "_uminumaxvmin", "(", "self", ",", "", "args", ",", "", "*", "kwargs", ")", ":", "delta", "=", "kwargs", ".", "pop", "(", "'delta'", ",", "self", ".", "_delta", ")", "if", "(", "(", "self", ".", "_c", "and", "not", "(", "'c'", "in", "k...	42.695652	14.565217
def get_configurations_on_targets(self, target_name=None, configuration_name=None): """ Retrieves all configuration given a name on the specified target :param target_name: Searches for a specific target name or a list of target names. If None all targets are used :param configuration_na...	[ "def", "get_configurations_on_targets", "(", "self", ",", "target_name", "=", "None", ",", "configuration_name", "=", "None", ")", ":", "for", "target", "in", "self", ".", "get_targets", "(", "target_name", ")", ":", "configuration_list", "=", "self", "[", "ta...	64.571429	34.142857
def restart(self): """ Restarts the whole wizard from the beginning. """ # hide all of the pages for page in self._pages.values(): page.hide() pageId = self.startId() try: first_page = self._pages[pageId] except KeyError: ...	[ "def", "restart", "(", "self", ")", ":", "# hide all of the pages", "for", "page", "in", "self", ".", "_pages", ".", "values", "(", ")", ":", "page", ".", "hide", "(", ")", "pageId", "=", "self", ".", "startId", "(", ")", "try", ":", "first_page", "=...	34.795455	17.977273
def records(): """Load test data fixture.""" import uuid from invenio_records.api import Record from invenio_pidstore.models import PersistentIdentifier, PIDStatus create_test_user() indexer = RecordIndexer() # Record 1 - Live record with db.session.begin_nested(): rec_uuid = ...	[ "def", "records", "(", ")", ":", "import", "uuid", "from", "invenio_records", ".", "api", "import", "Record", "from", "invenio_pidstore", ".", "models", "import", "PersistentIdentifier", ",", "PIDStatus", "create_test_user", "(", ")", "indexer", "=", "RecordIndexe...	28.5	17.133333
def compare(buf_a, buf_b, ignore): """Compare of two Buffer item""" for field in getattr(buf_a, '_fields_'): name, types = field[0], field[1] if name in ignore: continue val_a = getattr(buf_a, name) val_b = getattr(buf_b, name) if isinstance(types, (type(Un...	[ "def", "compare", "(", "buf_a", ",", "buf_b", ",", "ignore", ")", ":", "for", "field", "in", "getattr", "(", "buf_a", ",", "'_fields_'", ")", ":", "name", ",", "types", "=", "field", "[", "0", "]", ",", "field", "[", "1", "]", "if", "name", "in",...	30.481481	15.814815
def _render_uncached_items(self, items, result): """ Render a list of items, that didn't exist in the cache yet. """ for contentitem in items: # Render the item. # Allow derived classes to skip it. try: output = self.render_item(content...	[ "def", "_render_uncached_items", "(", "self", ",", "items", ",", "result", ")", ":", "for", "contentitem", "in", "items", ":", "# Render the item.", "# Allow derived classes to skip it.", "try", ":", "output", "=", "self", ".", "render_item", "(", "contentitem", "...	39	17.695652
def _check_link_completion(self, link, fail_pending=False, fail_running=False): """Internal function to check the completion of all the dispatched jobs Returns ------- status_vect : `JobStatusVector` Vector that summarize the number of jobs in various states. """ ...	[ "def", "_check_link_completion", "(", "self", ",", "link", ",", "fail_pending", "=", "False", ",", "fail_running", "=", "False", ")", ":", "status_vect", "=", "JobStatusVector", "(", ")", "for", "job_key", ",", "job_details", "in", "link", ".", "jobs", ".", ...	39.419355	18.322581
def to_pybel(self): """ Produce a Pybel Molecule object. It is based on the capabilities of OpenBabel through Pybel. The present object must have at least `atomcoords`, `atomnos`, `charge` and `mult` defined. Returns ------- `pybel.Molecule` Exa...	[ "def", "to_pybel", "(", "self", ")", ":", "# TODO: This only exports last geometry by default.", "obmol", "=", "_makeopenbabel", "(", "self", ".", "atomcoords", ",", "self", ".", "atomnos", ",", "self", ".", "charge", ",", "self", ".", "mult", ")", "title", "=...	31.945946	19.027027
def _getFieldStats(self): """ Method which returns a dictionary of field statistics received from the input source. Returns: fieldStats: dict of dicts where the first level is the field name and the second level is the statistic. ie. fieldStats['pounds']['min'] """ fieldStats =...	[ "def", "_getFieldStats", "(", "self", ")", ":", "fieldStats", "=", "dict", "(", ")", "fieldNames", "=", "self", ".", "_inputSource", ".", "getFieldNames", "(", ")", "for", "field", "in", "fieldNames", ":", "curStats", "=", "dict", "(", ")", "curStats", "...	29.55	22.55
def make_table(grid): """ Make a RST-compatible table From http://stackoverflow.com/a/12539081 """ cell_width = 2 + max( reduce( lambda x, y: x+y, [[len(item) for item in row] for row in grid], [] ) ) num_cols = len(grid[0]) rst = table_div(num_cols, cell_width,...	[ "def", "make_table", "(", "grid", ")", ":", "cell_width", "=", "2", "+", "max", "(", "reduce", "(", "lambda", "x", ",", "y", ":", "x", "+", "y", ",", "[", "[", "len", "(", "item", ")", "for", "item", "in", "row", "]", "for", "row", "in", "gri...	26.809524	19.857143
def save_group(self, group): """ Group was saved. """ # If group already exists, take over existing group rather then error. try: lgroup = self._get_group(group.name) changes = changeset(lgroup, {}) except ObjectDoesNotExist: lgroup = self._group_class...	[ "def", "save_group", "(", "self", ",", "group", ")", ":", "# If group already exists, take over existing group rather then error.", "try", ":", "lgroup", "=", "self", ".", "_get_group", "(", "group", ".", "name", ")", "changes", "=", "changeset", "(", "lgroup", ",...	33.5	13.5
def update(self, feedforwardInputI, feedforwardInputE, v, recurrent=True, envelope=False, iSpeedTuning=False, enforceDale=True): """ Do one update of the CAN network, of length self.dt. :param feedforwardInputI: The feedforward input to inhibitory cells. :param feedforwardInputR: The feedfo...	[ "def", "update", "(", "self", ",", "feedforwardInputI", ",", "feedforwardInputE", ",", "v", ",", "recurrent", "=", "True", ",", "envelope", "=", "False", ",", "iSpeedTuning", "=", "False", ",", "enforceDale", "=", "True", ")", ":", "self", ".", "instantane...	44.054054	22.378378
def stop(self): '''Stop the rpc server.''' if self.uiautomator_process and self.uiautomator_process.poll() is None: res = None try: res = urllib2.urlopen(self.stop_uri) self.uiautomator_process.wait() except: self.uiauto...	[ "def", "stop", "(", "self", ")", ":", "if", "self", ".", "uiautomator_process", "and", "self", ".", "uiautomator_process", ".", "poll", "(", ")", "is", "None", ":", "res", "=", "None", "try", ":", "res", "=", "urllib2", ".", "urlopen", "(", "self", "...	39.545455	20.454545
def index_in_tree(self, cmd_path): """ Return the start index of which the element is not in cmd tree. :type cmd_path: list or tuple :return: None if cmd_path already indexed in tree. """ current_tree = self.tree for key in cmd_path: if key in current_...	[ "def", "index_in_tree", "(", "self", ",", "cmd_path", ")", ":", "current_tree", "=", "self", ".", "tree", "for", "key", "in", "cmd_path", ":", "if", "key", "in", "current_tree", "[", "'children'", "]", ":", "current_tree", "=", "current_tree", "[", "'child...	35.923077	11.615385
def extract_time_info(text): """ Extract valid time(-range) information from a string according to our specs. Args: text (text_type): Raw string containing encoded time(-span) information. Date/Time-combinations are expected in a ``YYYY-MM-DD hh:mm`` format. Relative times ...	[ "def", "extract_time_info", "(", "text", ")", ":", "# [TODO] Add a list of supported formats.", "def", "get_time", "(", "time", ",", "seconds", "=", "None", ")", ":", "\"\"\"Convert a times string representation to datetime.time instance.\"\"\"", "if", "time", "is", "None",...	36.754902	22.617647
def hexists(key, field, host=None, port=None, db=None, password=None): ''' Determine if a hash fields exists. .. versionadded:: 2017.7.0 CLI Example: .. code-block:: bash salt '*' redis.hexists foo_hash bar_field ''' server = _connect(host, port, db, password) return server.h...	[ "def", "hexists", "(", "key", ",", "field", ",", "host", "=", "None", ",", "port", "=", "None", ",", "db", "=", "None", ",", "password", "=", "None", ")", ":", "server", "=", "_connect", "(", "host", ",", "port", ",", "db", ",", "password", ")", ...	23.214286	23.357143
def findPrev( self ): """ Looks for the previous occurance of the current search text. """ text = self.uiFindTXT.text() view = self.currentWebView() options = QWebPage.FindWrapsAroundDocument options \|= QWebPage.FindBackward if...	[ "def", "findPrev", "(", "self", ")", ":", "text", "=", "self", ".", "uiFindTXT", ".", "text", "(", ")", "view", "=", "self", ".", "currentWebView", "(", ")", "options", "=", "QWebPage", ".", "FindWrapsAroundDocument", "options", "\|=", "QWebPage", ".", "F...	32.571429	13.285714
def tilequeue_tile_status(cfg, peripherals, args): """ Report the status of the given tiles in the store, queue and TOI. """ logger = make_logger(cfg, 'tile_status') # friendly warning to avoid confusion when this command outputs nothing # at all when called with no positional arguments. if...	[ "def", "tilequeue_tile_status", "(", "cfg", ",", "peripherals", ",", "args", ")", ":", "logger", "=", "make_logger", "(", "cfg", ",", "'tile_status'", ")", "# friendly warning to avoid confusion when this command outputs nothing", "# at all when called with no positional argume...	33.745098	20.607843
def update_deps( self ): """Update dependencies on all the fields on this Block instance.""" klass = self.__class__ for name in klass._fields: self.update_deps_on_field( name ) return	[ "def", "update_deps", "(", "self", ")", ":", "klass", "=", "self", ".", "__class__", "for", "name", "in", "klass", ".", "_fields", ":", "self", ".", "update_deps_on_field", "(", "name", ")", "return" ]	31.714286	14.714286
def parseAttributes(self, attributes=None, **kwAttributes): """Parses CSS attribute source strings, and return as an inline stylesheet. Use to parse a tag's highly CSS-based attributes like 'font'. See also: parseSingleAttr """ attributes = attributes if attributes is not None e...	[ "def", "parseAttributes", "(", "self", ",", "attributes", "=", "None", ",", "", "", "kwAttributes", ")", ":", "attributes", "=", "attributes", "if", "attributes", "is", "not", "None", "else", "{", "}", "if", "attributes", ":", "kwAttributes", ".", "updat...	35.923077	19.692308
def resource_group_absent(name, connection_auth=None): ''' .. versionadded:: 2019.2.0 Ensure a resource group does not exist in the current subscription. :param name: Name of the resource group. :param connection_auth: A dict with subscription and authentication parameters to be u...	[ "def", "resource_group_absent", "(", "name", ",", "connection_auth", "=", "None", ")", ":", "ret", "=", "{", "'name'", ":", "name", ",", "'result'", ":", "False", ",", "'comment'", ":", "''", ",", "'changes'", ":", "{", "}", "}", "if", "not", "isinstan...	29.349206	28.746032
def render(self, kwargs): """ Plots the surface and the control points grid. """ # Calling parent function super(VisSurface, self).render(kwargs) # Initialize a list to store VTK actors vtk_actors = [] # Start plotting for plot in self._plots: # ...	[ "def", "render", "(", "self", ",", "", "", "kwargs", ")", ":", "# Calling parent function", "super", "(", "VisSurface", ",", "self", ")", ".", "render", "(", "", "", "kwargs", ")", "# Initialize a list to store VTK actors", "vtk_actors", "=", "[", "]", "...	53.529412	25.568627
def generate_account(self, services, resource_types, permission, expiry, start=None, ip=None, protocol=None): ''' Generates a shared access signature for the account. Use the returned signature with the sas_token parameter of the service or to create a new accou...	[ "def", "generate_account", "(", "self", ",", "services", ",", "resource_types", ",", "permission", ",", "expiry", ",", "start", "=", "None", ",", "ip", "=", "None", ",", "protocol", "=", "None", ")", ":", "sas", "=", "_SharedAccessHelper", "(", ")", "sas...	58.269231	28.846154
def ip_interfaces(): ''' Provide a dict of the connected interfaces and their ip addresses The addresses will be passed as a list for each interface ''' # Provides: # ip_interfaces if salt.utils.platform.is_proxy(): return {} ret = {} ifaces = _get_interfaces() for fa...	[ "def", "ip_interfaces", "(", ")", ":", "# Provides:", "# ip_interfaces", "if", "salt", ".", "utils", ".", "platform", ".", "is_proxy", "(", ")", ":", "return", "{", "}", "ret", "=", "{", "}", "ifaces", "=", "_get_interfaces", "(", ")", "for", "face", ...	31.461538	17.769231
def calc_next_run(self): """Calculate next run time of this task""" base_time = self.last_run if self.last_run == HAS_NOT_RUN: if self.wait_for_schedule is False: self.next_run = timezone.now() self.wait_for_schedule = False # reset so we don't run on ...	[ "def", "calc_next_run", "(", "self", ")", ":", "base_time", "=", "self", ".", "last_run", "if", "self", ".", "last_run", "==", "HAS_NOT_RUN", ":", "if", "self", ".", "wait_for_schedule", "is", "False", ":", "self", ".", "next_run", "=", "timezone", ".", ...	41.076923	15.384615
def _run_mplp(self, no_iterations): """ Updates messages until either Mplp converges or if doesn't converges; halts after no_iterations. Parameters -------- no_iterations: integer Number of maximum iterations that we want MPLP to run. """ ...	[ "def", "_run_mplp", "(", "self", ",", "no_iterations", ")", ":", "for", "niter", "in", "range", "(", "no_iterations", ")", ":", "# We take the clusters in the order they were added in the model and update messages for all factors whose", "# scope is greater than 1", "for", "fac...	49.4	25.3
def createqtconf(): """Create a qt.conf file next to the current executable""" template = """[Paths] Prefix = {path} Binaries = {path} """ import PyQt5 exedir = os.path.dirname(sys.executable) qtpath = os.path.join(exedir, "qt.conf") pyqt5path = os.path.abspath(PyQt5.__file__) binpath = o...	[ "def", "createqtconf", "(", ")", ":", "template", "=", "\"\"\"[Paths]\nPrefix = {path}\nBinaries = {path}\n\"\"\"", "import", "PyQt5", "exedir", "=", "os", ".", "path", ".", "dirname", "(", "sys", ".", "executable", ")", "qtpath", "=", "os", ".", "path", ".", ...	23.4	19.5
def generate_warning_text(self): """ generates warnings for the current specimen then adds them to the current warning text for the GUI which will be rendered on a call to update_warning_box. """ self.warning_text = "" if self.s in list(self.pmag_results_data['spe...	[ "def", "generate_warning_text", "(", "self", ")", ":", "self", ".", "warning_text", "=", "\"\"", "if", "self", ".", "s", "in", "list", "(", "self", ".", "pmag_results_data", "[", "'specimens'", "]", ".", "keys", "(", ")", ")", ":", "for", "fit", "in", ...	62.816667	29.35
def _euler_to_dcm(self, euler): """ Create DCM (Matrix3) from euler angles :param euler: array [roll, pitch, yaw] in rad :returns: Matrix3 """ assert(len(euler) == 3) m = Matrix3() m.from_euler(*euler) return m	[ "def", "_euler_to_dcm", "(", "self", ",", "euler", ")", ":", "assert", "(", "len", "(", "euler", ")", "==", "3", ")", "m", "=", "Matrix3", "(", ")", "m", ".", "from_euler", "(", "*", "euler", ")", "return", "m" ]	27.3	10.7
def _GetTimeElementsTuple(self, structure): """Retrieves a time elements tuple from the structure. Args: structure (pyparsing.ParseResults): structure of tokens derived from a line of a text file. Returns: tuple: containing: year (int): year. month (int): month, where...	[ "def", "_GetTimeElementsTuple", "(", "self", ",", "structure", ")", ":", "month", ",", "day", ",", "hours", ",", "minutes", ",", "seconds", "=", "structure", ".", "date_time", "# Note that dfdatetime_time_elements.TimeElements will raise ValueError", "# for an invalid mon...	33.111111	20.481481
def content(): """Helper method that returns just the content. This method was added so that the text could be reused in the dock_help module. .. versionadded:: 3.2.2 :returns: A message object without brand element. :rtype: safe.messaging.message.Message """ message = m.Message() ...	[ "def", "content", "(", ")", ":", "message", "=", "m", ".", "Message", "(", ")", "paragraph", "=", "m", ".", "Paragraph", "(", "m", ".", "Image", "(", "'file:///%s/img/screenshots/'", "'shakemap-converter-screenshot.png'", "%", "resources_path", "(", ")", ")", ...	32.744186	22.744186
def update(self, access_token=None, id_token=None, id_token_jwt=None, userinfo=None): """ Args: access_token (str) id_token (Mapping[str, str]) id_token_jwt (str) userinfo (Mapping[str, str]) """ def set_if_defined(session_key, value): ...	[ "def", "update", "(", "self", ",", "access_token", "=", "None", ",", "id_token", "=", "None", ",", "id_token_jwt", "=", "None", ",", "userinfo", "=", "None", ")", ":", "def", "set_if_defined", "(", "session_key", ",", "value", ")", ":", "if", "value", ...	34.409091	16.136364
def is_entailed_by(self, other): """ Whether all of self's keys (and values) are in (and within) other's """ for (s_key, s_val) in self: if s_key in other: if not other[s_key].entails(s_val): return False else: r...	[ "def", "is_entailed_by", "(", "self", ",", "other", ")", ":", "for", "(", "s_key", ",", "s_val", ")", "in", "self", ":", "if", "s_key", "in", "other", ":", "if", "not", "other", "[", "s_key", "]", ".", "entails", "(", "s_val", ")", ":", "return", ...	31	12.090909
def _find_udf_record(self, udf_path): # type: (bytes) -> Tuple[Optional[udfmod.UDFFileIdentifierDescriptor], udfmod.UDFFileEntry] ''' An internal method to find an directory record on the ISO given a UDF path. If the entry is found, it returns the directory record object corresp...	[ "def", "_find_udf_record", "(", "self", ",", "udf_path", ")", ":", "# type: (bytes) -> Tuple[Optional[udfmod.UDFFileIdentifierDescriptor], udfmod.UDFFileEntry]", "# If the path is just the slash, we just want the root directory, so", "# get the child there and quit.", "if", "udf_path", "==...	36.333333	23
def log(stats_resource=None, stats_source=None, log_level=DEFAULT_LOG_LEVEL, *kwargs): """Utility to log given stats to stats* logger. Stats to log are given by `stats_source` and in its absence we log `kwargs`. stats logger is configured independently from any logger. Only stats should be ...	[ "def", "log", "(", "stats_resource", "=", "None", ",", "stats_source", "=", "None", ",", "log_level", "=", "DEFAULT_LOG_LEVEL", ",", "", "", "kwargs", ")", ":", "# Get stats from source if given.", "if", "stats_source", "is", "not", "None", ":", "kwargs", "=...	39.9	21.675
def reverse_compl_with_name(old_seq): """Reverse a SeqIO sequence, but keep its name intact.""" new_seq = old_seq.reverse_complement() new_seq.id = old_seq.id new_seq.description = old_seq.description return new_seq	[ "def", "reverse_compl_with_name", "(", "old_seq", ")", ":", "new_seq", "=", "old_seq", ".", "reverse_complement", "(", ")", "new_seq", ".", "id", "=", "old_seq", ".", "id", "new_seq", ".", "description", "=", "old_seq", ".", "description", "return", "new_seq" ...	38.333333	7.5
def load_rml(self, rml_name): """ loads an rml mapping into memory args: rml_name(str): the name of the rml file """ conn = CFG.rml_tstore cache_path = os.path.join(CFG.CACHE_DATA_PATH, 'rml_files', rml_name) if not os.path.exists(cache_path): res...	[ "def", "load_rml", "(", "self", ",", "rml_name", ")", ":", "conn", "=", "CFG", ".", "rml_tstore", "cache_path", "=", "os", ".", "path", ".", "join", "(", "CFG", ".", "CACHE_DATA_PATH", ",", "'rml_files'", ",", "rml_name", ")", "if", "not", "os", ".", ...	39.470588	15.764706
def updateTimeline(self, time, state='stopped', duration=None): """ Set the timeline progress for this video. Parameters: time (int): milliseconds watched state (string): state of the video, default 'stopped' duration (int): duration of the item ...	[ "def", "updateTimeline", "(", "self", ",", "time", ",", "state", "=", "'stopped'", ",", "duration", "=", "None", ")", ":", "durationStr", "=", "'&duration='", "if", "duration", "is", "not", "None", ":", "durationStr", "=", "durationStr", "+", "str", "(", ...	43.117647	18.882353
def _generate_struct_cstor_signature(self, struct): """Emits struct standard constructor signature to be used in the struct's header file.""" fields = struct.all_fields self.emit(comment_prefix) description_str = 'Full constructor for the struct (exposes all instance variables).' ...	[ "def", "_generate_struct_cstor_signature", "(", "self", ",", "struct", ")", ":", "fields", "=", "struct", ".", "all_fields", "self", ".", "emit", "(", "comment_prefix", ")", "description_str", "=", "'Full constructor for the struct (exposes all instance variables).'", "se...	46.68	14.48
def materials(self): """ Property for accessing :class:`MaterialManager` instance, which is used to manage materials. :rtype: yagocd.resources.material.MaterialManager """ if self._material_manager is None: self._material_manager = MaterialManager(session=self._sessi...	[ "def", "materials", "(", "self", ")", ":", "if", "self", ".", "_material_manager", "is", "None", ":", "self", ".", "_material_manager", "=", "MaterialManager", "(", "session", "=", "self", ".", "_session", ")", "return", "self", ".", "_material_manager" ]	39.222222	19.666667
def setup_interpolant(self): """Initializes the z(d) interpolation.""" # for computing nearby (z < 1) redshifts zs = numpy.linspace(0., 1., num=self.numpoints) ds = self.cosmology.luminosity_distance(zs).value self.nearby_d2z = interpolate.interp1d(ds, zs, kind='linear', ...	[ "def", "setup_interpolant", "(", "self", ")", ":", "# for computing nearby (z < 1) redshifts", "zs", "=", "numpy", ".", "linspace", "(", "0.", ",", "1.", ",", "num", "=", "self", ".", "numpoints", ")", "ds", "=", "self", ".", "cosmology", ".", "luminosity_di...	54	15.133333
def post(self, request, bot_id, format=None): """ Add a new environment variable --- serializer: EnvironmentVarSerializer responseMessages: - code: 401 message: Not authenticated - code: 400 message: Not valid request ""...	[ "def", "post", "(", "self", ",", "request", ",", "bot_id", ",", "format", "=", "None", ")", ":", "return", "super", "(", "EnvironmentVarList", ",", "self", ")", ".", "post", "(", "request", ",", "bot_id", ",", "format", ")" ]	32.25	10.416667
def resizeEvent(self, event): """Mark repaint needed. :qtdoc:`Re-implemented<QWidget.resizeEvent>`""" self._viewIsDirty = True super(StimulusView, self).resizeEvent(event)	[ "def", "resizeEvent", "(", "self", ",", "event", ")", ":", "self", ".", "_viewIsDirty", "=", "True", "super", "(", "StimulusView", ",", "self", ")", ".", "resizeEvent", "(", "event", ")" ]	48	7.75
def iterable(self, iterable_name, *, collection, attribute, word, func=None, operation=None): """ Performs a filter with the OData 'iterable_name' keyword on the collection For example: q.iterable('any', collection='email_addresses', attribute='address', operati...	[ "def", "iterable", "(", "self", ",", "iterable_name", ",", "*", ",", "collection", ",", "attribute", ",", "word", ",", "func", "=", "None", ",", "operation", "=", "None", ")", ":", "if", "func", "is", "None", "and", "operation", "is", "None", ":", "r...	37.469388	22.469388
def increment_day_start_ut(self, day_start_ut, n_days=1): """Increment the GTFS-definition of "day start". Parameters ---------- day_start_ut : int unixtime of the previous start of day. If this time is between 12:00 or greater, there will be bugs. To solve t...	[ "def", "increment_day_start_ut", "(", "self", ",", "day_start_ut", ",", "n_days", "=", "1", ")", ":", "old_tz", "=", "self", ".", "set_current_process_time_zone", "(", ")", "day0", "=", "time", ".", "localtime", "(", "day_start_ut", "+", "43200", ")", "# tim...	42.368421	18.315789
def woa_track_from_file(d, lat, lon, filename, varnames=None): """ Temporary solution: WOA for surface track """ d = np.asanyarray(d) lat = np.asanyarray(lat) lon = np.asanyarray(lon) lon[lon < 0] += 360 doy = np.array([int(dd.strftime('%j')) for dd in d]) nc = netCDF4.Dataset(expandu...	[ "def", "woa_track_from_file", "(", "d", ",", "lat", ",", "lon", ",", "filename", ",", "varnames", "=", "None", ")", ":", "d", "=", "np", ".", "asanyarray", "(", "d", ")", "lat", "=", "np", ".", "asanyarray", "(", "lat", ")", "lon", "=", "np", "."...	29.405405	20.972973
def stop(self): """ Stop the monitoring thread of the plugin. The super-class will send the stop signal on the monitor-IP queue, which prompts the loop to stop. """ super(Tcp, self).stop() self.monitor_thread.join() logging.info("TCP health monitor plugi...	[ "def", "stop", "(", "self", ")", ":", "super", "(", "Tcp", ",", "self", ")", ".", "stop", "(", ")", "self", ".", "monitor_thread", ".", "join", "(", ")", "logging", ".", "info", "(", "\"TCP health monitor plugin: Stopped\"", ")" ]	29.272727	16.545455
def addvPPfunc(self,solution): ''' Adds the marginal marginal value function to an existing solution, so that the next solver can evaluate vPP and thus use cubic interpolation. Parameters ---------- solution : ConsumerSolution The solution to this single peri...	[ "def", "addvPPfunc", "(", "self", ",", "solution", ")", ":", "vPPfuncNow", "=", "MargMargValueFunc", "(", "solution", ".", "cFunc", ",", "self", ".", "CRRA", ")", "solution", ".", "vPPfunc", "=", "vPPfuncNow", "return", "solution" ]	36.9	24.7
def get_user_metadata( self, bucket: str, key: str ) -> typing.Dict[str, str]: """ Retrieves the user metadata for a given object in a given bucket. If the platform has any mandatory prefixes or suffixes for the metadata keys, they should be stripped befo...	[ "def", "get_user_metadata", "(", "self", ",", "bucket", ":", "str", ",", "key", ":", "str", ")", "->", "typing", ".", "Dict", "[", "str", ",", "str", "]", ":", "try", ":", "response", "=", "self", ".", "get_all_metadata", "(", "bucket", ",", "key", ...	40.096774	20.354839
def add_fields(self, *args): """ This method only works for extensible fields. It allows to add values without precising their fields' names or indexes. Parameters ---------- args: field values """ if not self.is_extensible(): raise TypeError(...	[ "def", "add_fields", "(", "self", ",", "*", "args", ")", ":", "if", "not", "self", ".", "is_extensible", "(", ")", ":", "raise", "TypeError", "(", "\"Can't use add_fields on a non extensible record.\"", ")", "# prepare update data", "self_len", "=", "len", "(", ...	29.5	23.5
def _compute(self, inputs, dates, assets, mask): """ Compute by delegating to self._wrapped_term._compute on sample dates. On non-sample dates, forward-fill from previously-computed samples. """ to_sample = dates[select_sampling_indices(dates, self._frequency)] assert to...	[ "def", "_compute", "(", "self", ",", "inputs", ",", "dates", ",", "assets", ",", "mask", ")", ":", "to_sample", "=", "dates", "[", "select_sampling_indices", "(", "dates", ",", "self", ".", "_frequency", ")", "]", "assert", "to_sample", "[", "0", "]", ...	40.333333	20.025641
def plot_oneD(dataset, vars, filename, bins=60): """ Plot 1D marginalised posteriors for the 'vars' of interest.""" n = len(vars) fig, axes = plt.subplots(nrows=n, ncols=1, sharex=False, sharey=False) for i, x in en...	[ "def", "plot_oneD", "(", "dataset", ",", "vars", ",", "filename", ",", "bins", "=", "60", ")", ":", "n", "=", "len", "(", "vars", ")", "fig", ",", "axes", "=", "plt", ".", "subplots", "(", "nrows", "=", "n", ",", "ncols", "=", "1", ",", "sharex...	31.684211	16.210526
def add_iterative_predicate(self, key, values_list): """add an iterative predicate with a key and set of values which it can be equal to in and or function. The individual predicates are specified with the type ``equals`` and combined with a type ``or``. The main reason for this...	[ "def", "add_iterative_predicate", "(", "self", ",", "key", ",", "values_list", ")", ":", "values", "=", "self", ".", "_extract_values", "(", "values_list", ")", "predicate", "=", "{", "'type'", ":", "'equals'", ",", "'key'", ":", "key", ",", "'value'", ":"...	41.347826	20.521739
def get_power(self): """Returns the Power in Watt""" power_dict = self.get_power_all() for device in power_dict.keys(): power_dict[device] = float(power_dict[device]) / 1000.0 return power_dict	[ "def", "get_power", "(", "self", ")", ":", "power_dict", "=", "self", ".", "get_power_all", "(", ")", "for", "device", "in", "power_dict", ".", "keys", "(", ")", ":", "power_dict", "[", "device", "]", "=", "float", "(", "power_dict", "[", "device", "]"...	38.666667	10.5
def confirmation_option(param_decls, *attrs): """Shortcut for confirmation prompts that can be ignored by passing ``--yes`` as parameter. This is equivalent to decorating a function with :func:`option` with the following parameters:: def callback(ctx, param, value): if not value:...	[ "def", "confirmation_option", "(", "", "param_decls", ",", "", "*", "attrs", ")", ":", "def", "decorator", "(", "f", ")", ":", "def", "callback", "(", "ctx", ",", "param", ",", "value", ")", ":", "if", "not", "value", ":", "ctx", ".", "abort", "(...	36.107143	17.392857
def get_data(self, create=False): """Get dict stored for current running task. Return `None` or an empty dict if no data was found depending on the `create` argument value. :param create: if argument is `True`, create empty dict for task, default: `False` ...	[ "def", "get_data", "(", "self", ",", "create", "=", "False", ")", ":", "task", "=", "asyncio_current_task", "(", "loop", "=", "self", ".", "loop", ")", "if", "task", ":", "task_id", "=", "id", "(", "task", ")", "if", "create", "and", "task_id", "not"...	38.5	12.5625
def calc_across_paths_textnodes(paths_nodes, dbg=False): """Given a list of parent paths tupled with children textnodes, plus initialized feature values, we calculate the total and average string length of the parent's children textnodes. """ # for (path, [textnodes], # num. of...	[ "def", "calc_across_paths_textnodes", "(", "paths_nodes", ",", "dbg", "=", "False", ")", ":", "# for (path, [textnodes],\r", "# num. of tnodes,\r", "# ttl strlen across tnodes,\r", "# avg strlen across tnodes.])\r", "for", "path_nodes", "in", "paths_no...	44.5	15.333333
def add_statement(self,statement_obj): """ Adds a statement to the attribution layer @type statement_obj: L{Cstatement} @param statement_obj: the statement object """ if self.attribution_layer is None: self.attribution_layer = Cattribution() self.r...	[ "def", "add_statement", "(", "self", ",", "statement_obj", ")", ":", "if", "self", ".", "attribution_layer", "is", "None", ":", "self", ".", "attribution_layer", "=", "Cattribution", "(", ")", "self", ".", "root", ".", "append", "(", "self", ".", "attribut...	41.6	7.8
def after(self, value): """ Sets the operator type to Query.Op.After and sets the value to the amount that this query should be lower than. This is functionally the same as doing the lessThan operation, but is useful for visual queries for things like dates. :p...	[ "def", "after", "(", "self", ",", "value", ")", ":", "newq", "=", "self", ".", "copy", "(", ")", "newq", ".", "setOp", "(", "Query", ".", "Op", ".", "After", ")", "newq", ".", "setValue", "(", "value", ")", "return", "newq" ]	35.2	16.7
def fatal(tokens: Token, kwargs: Any) -> None: """ Print an error message and call ``sys.exit`` """ error(tokens, **kwargs) sys.exit(1)	[ "def", "fatal", "(", "", "tokens", ":", "Token", ",", "", "", "kwargs", ":", "Any", ")", "->", "None", ":", "error", "(", "", "tokens", ",", "", "", "kwargs", ")", "sys", ".", "exit", "(", "1", ")" ]	37	11.5
def setActiveWindow(self, win): """ Set the given window active (property _NET_ACTIVE_WINDOW) :param win: the window object""" self._setProperty('_NET_ACTIVE_WINDOW', [1, X.CurrentTime, win.id], win)	[ "def", "setActiveWindow", "(", "self", ",", "win", ")", ":", "self", ".", "_setProperty", "(", "'_NET_ACTIVE_WINDOW'", ",", "[", "1", ",", "X", ".", "CurrentTime", ",", "win", ".", "id", "]", ",", "win", ")" ]	36	17
def subclass(self, klass): """True if the Class is a subclass of the given one.""" return bool(lib.EnvSubclassP(self._env, self._cls, klass._cls))	[ "def", "subclass", "(", "self", ",", "klass", ")", ":", "return", "bool", "(", "lib", ".", "EnvSubclassP", "(", "self", ".", "_env", ",", "self", ".", "_cls", ",", "klass", ".", "_cls", ")", ")" ]	53.333333	15
def tiny(x): '''Compute the tiny-value corresponding to an input's data type. This is the smallest "usable" number representable in `x`'s data type (e.g., float32). This is primarily useful for determining a threshold for numerical underflow in division or multiplication operations. Parameter...	[ "def", "tiny", "(", "x", ")", ":", "# Make sure we have an array view", "x", "=", "np", ".", "asarray", "(", "x", ")", "# Only floating types generate a tiny", "if", "np", ".", "issubdtype", "(", "x", ".", "dtype", ",", "np", ".", "floating", ")", "or", "n...	22.846154	25.461538
def list_scheduled_queries(self): """ List all scheduled_queries :return: A list of all scheduled query dicts :rtype: list of dict :raises: This will raise a :class:`ServerException<logentries_api.exceptions.ServerException>` if there is an error from Lo...	[ "def", "list_scheduled_queries", "(", "self", ")", ":", "url", "=", "'https://logentries.com/rest/{account_id}/api/scheduled_queries/'", ".", "format", "(", "account_id", "=", "self", ".", "account_id", ")", "return", "self", ".", "_api_get", "(", "url", "=", "url",...	37.071429	17.214286
def get_unit_from_dimensions(dimensions, text): """Reconcile a unit based on its dimensionality.""" key = l.get_key_from_dimensions(dimensions) try: unit = l.DERIVED_UNI[key] except KeyError: logging.debug(u'\tCould not find unit for: %s', key) unit = c.Unit(name=build_unit_name...	[ "def", "get_unit_from_dimensions", "(", "dimensions", ",", "text", ")", ":", "key", "=", "l", ".", "get_key_from_dimensions", "(", "dimensions", ")", "try", ":", "unit", "=", "l", ".", "DERIVED_UNI", "[", "key", "]", "except", "KeyError", ":", "logging", "...	35.230769	19.307692
def handle(self, data, **kwargs): """Run marshalling for the specified mapper_class. Supports both .marshal and .many().marshal Kim interfaces. Handles errors raised during marshalling and automatically returns a HTTP error response. :param data: Data to be marshaled. :returns...	[ "def", "handle", "(", "self", ",", "data", ",", "", "", "kwargs", ")", ":", "try", ":", "if", "self", ".", "many", ":", "return", "self", ".", "mapper", ".", "many", "(", "raw", "=", "self", ".", "raw", ",", "", "", "self", ".", "mapper_kwa...	38.458333	16.5
def merge_rdf_list(rdf_list): """ takes an rdf list and merges it into a python list args: rdf_list: the RdfDataset object with the list values returns: list of values """ # pdb.set_trace() if isinstance(rdf_list, list): rdf_list = rdf_list[0] rtn_list = [] # fo...	[ "def", "merge_rdf_list", "(", "rdf_list", ")", ":", "# pdb.set_trace()", "if", "isinstance", "(", "rdf_list", ",", "list", ")", ":", "rdf_list", "=", "rdf_list", "[", "0", "]", "rtn_list", "=", "[", "]", "# for item in rdf_list:", "item", "=", "rdf_list", "i...	27.619048	18.142857
def set_from_template_string(self, string): """ Reads the given template (SMTP formatted) and sets all fields accordingly. :type string: string :param string: The template. """ in_header = True body = '' for line in string.split('\n'): ...	[ "def", "set_from_template_string", "(", "self", ",", "string", ")", ":", "in_header", "=", "True", "body", "=", "''", "for", "line", "in", "string", ".", "split", "(", "'\\n'", ")", ":", "if", "not", "in_header", ":", "body", "+=", "line", "+", "'\\n'"...	32.03125	10.84375
def delete_resourcegroup(group_id,**kwargs): """ Add a new group to a scenario. """ group_i = _get_group(group_id) #This should cascaded to delete all the group items. db.DBSession.delete(group_i) db.DBSession.flush() return 'OK'	[ "def", "delete_resourcegroup", "(", "group_id", ",", "", "", "kwargs", ")", ":", "group_i", "=", "_get_group", "(", "group_id", ")", "#This should cascaded to delete all the group items.", "db", ".", "DBSession", ".", "delete", "(", "group_i", ")", "db", ".", ...	25.7	11.7
def execute_cmd_direct(self, userid, cmdStr): """"cmdVM.""" requestData = 'cmdVM ' + userid + ' CMD \'' + cmdStr + '\'' results = self._smt.request(requestData) return results	[ "def", "execute_cmd_direct", "(", "self", ",", "userid", ",", "cmdStr", ")", ":", "requestData", "=", "'cmdVM '", "+", "userid", "+", "' CMD \\''", "+", "cmdStr", "+", "'\\''", "results", "=", "self", ".", "_smt", ".", "request", "(", "requestData", ")", ...	40.6	11.6
def find_genome_length(contig_lengths_dict): """ Determine the total length of all the contigs for each strain :param contig_lengths_dict: dictionary of strain name: reverse-sorted list of all contig lengths :return: genome_length_dict: dictionary of strain name: total genome length """ # Initia...	[ "def", "find_genome_length", "(", "contig_lengths_dict", ")", ":", "# Initialise the dictionary", "genome_length_dict", "=", "dict", "(", ")", "for", "file_name", ",", "contig_lengths", "in", "contig_lengths_dict", ".", "items", "(", ")", ":", "# Use the sum() method to...	49.083333	19.416667
def unnest(self, data, fit=False): """ :param data: a dataframe containing a column to be unnested :param fit: if True, self.sequence_length will exactly accomodate the largest sequence length :return: 1D array of values with length = rows * sequence_length """ with timer...	[ "def", "unnest", "(", "self", ",", "data", ",", "fit", "=", "False", ")", ":", "with", "timer", "(", "'unnest %s'", "%", "self", ".", "name", ",", "logging", ".", "DEBUG", ")", ":", "raw", "=", "self", ".", "series", "(", "data", ")", "# lengths of...	51.76	18.96
def segment_intersection2(start0, end0, start1, end1): """Image for :func:`.segment_intersection` docstring.""" if NO_IMAGES: return line0 = bezier.Curve.from_nodes(stack1d(start0, end0)) line1 = bezier.Curve.from_nodes(stack1d(start1, end1)) ax = line0.plot(2) line1.plot(2, ax=ax) ...	[ "def", "segment_intersection2", "(", "start0", ",", "end0", ",", "start1", ",", "end1", ")", ":", "if", "NO_IMAGES", ":", "return", "line0", "=", "bezier", ".", "Curve", ".", "from_nodes", "(", "stack1d", "(", "start0", ",", "end0", ")", ")", "line1", ...	34.727273	18.727273
def end_timing(self): """ Ends timing of an execution block, calculates elapsed time and updates the associated counter. """ if self._callback != None: elapsed = time.perf_counter() * 1000 - self._start self._callback.end_timing(self._counter, elapsed)	[ "def", "end_timing", "(", "self", ")", ":", "if", "self", ".", "_callback", "!=", "None", ":", "elapsed", "=", "time", ".", "perf_counter", "(", ")", "*", "1000", "-", "self", ".", "_start", "self", ".", "_callback", ".", "end_timing", "(", "self", "...	37.75	21.25
def install(self, update=False): """ install conda packages """ offline = self.offline or update self.create_env(offline) self.install_pkgs(offline) self.install_pip(offline) return tuple()	[ "def", "install", "(", "self", ",", "update", "=", "False", ")", ":", "offline", "=", "self", ".", "offline", "or", "update", "self", ".", "create_env", "(", "offline", ")", "self", ".", "install_pkgs", "(", "offline", ")", "self", ".", "install_pip", ...	27.222222	6.333333
def configure_logging(emit_list): """Configure logging to send log records to the master.""" if 'sphinx' in sys.modules: module_base = 'resolwe.flow.executors' else: module_base = 'executors' logging_config = dict( version=1, formatters={ 'json_formatter': { ...	[ "def", "configure_logging", "(", "emit_list", ")", ":", "if", "'sphinx'", "in", "sys", ".", "modules", ":", "module_base", "=", "'resolwe.flow.executors'", "else", ":", "module_base", "=", "'executors'", "logging_config", "=", "dict", "(", "version", "=", "1", ...	27.853659	16.585366
def render(template, *context): ''' Render a template with uData frontend specifics Theme ''' theme = current_app.config['THEME'] return render_theme_template(get_theme(theme), template, **context)	[ "def", "render", "(", "template", ",", "", "", "context", ")", ":", "theme", "=", "current_app", ".", "config", "[", "'THEME'", "]", "return", "render_theme_template", "(", "get_theme", "(", "theme", ")", ",", "template", ",", "", "", "context", ")" ...	27.75	22.75
def is_arxiv(obj): """Return ``True`` if ``obj`` contains an arXiv identifier. The ``idutils`` library's ``is_arxiv`` function has been modified here to work with two regular expressions instead of three and adding a check for valid arxiv categories only""" arxiv_test = obj.split() if not arxiv...	[ "def", "is_arxiv", "(", "obj", ")", ":", "arxiv_test", "=", "obj", ".", "split", "(", ")", "if", "not", "arxiv_test", ":", "return", "False", "matched_arxiv", "=", "(", "RE_ARXIV_PRE_2007_CLASS", ".", "match", "(", "arxiv_test", "[", "0", "]", ")", "or",...	37.173913	23.565217
def output(self, original_filename): """ _filename is not used Args: _filename(string) """ for contract in self.contracts: for function in contract.functions + contract.modifiers: filename = "{}-{}-{}.dot".format(original_filen...	[ "def", "output", "(", "self", ",", "original_filename", ")", ":", "for", "contract", "in", "self", ".", "contracts", ":", "for", "function", "in", "contract", ".", "functions", "+", "contract", ".", "modifiers", ":", "filename", "=", "\"{}-{}-{}.dot\"", ".",...	38.166667	16.666667
def delete_node(self, root, key): """ :type root: TreeNode :type key: int :rtype: TreeNode """ if not root: return None if root.val == key: if root.left: # Find the right most leaf of the left sub-tree left_right_most =...	[ "def", "delete_node", "(", "self", ",", "root", ",", "key", ")", ":", "if", "not", "root", ":", "return", "None", "if", "root", ".", "val", "==", "key", ":", "if", "root", ".", "left", ":", "# Find the right most leaf of the left sub-tree", "left_right_most"...	36.730769	16.423077
def from_product(cls, iterables, sortorder=None, names=None): """ Make a MultiIndex from the cartesian product of multiple iterables. Parameters ---------- iterables : list / sequence of iterables Each iterable has unique labels for each level of the index. s...	[ "def", "from_product", "(", "cls", ",", "iterables", ",", "sortorder", "=", "None", ",", "names", "=", "None", ")", ":", "from", "pandas", ".", "core", ".", "arrays", ".", "categorical", "import", "_factorize_from_iterables", "from", "pandas", ".", "core", ...	38.288889	21.311111
def modify(board, opts=None): """ Reset an existing board using the given options. :param board: the board to reset :param opts: dictionary mapping str->Opt :return: None """ opts = get_opts(opts) if opts['board'] is not None: board.tiles = _read_tiles_from_string(opts['board']) ...	[ "def", "modify", "(", "board", ",", "opts", "=", "None", ")", ":", "opts", "=", "get_opts", "(", "opts", ")", "if", "opts", "[", "'board'", "]", "is", "not", "None", ":", "board", ".", "tiles", "=", "_read_tiles_from_string", "(", "opts", "[", "'boar...	37.1875	15.8125
def set_status(self, status): """ Updates the status text Args: status (int): The offline/starting/online status of Modis 0: offline, 1: starting, 2: online """ text = "" colour = "#FFFFFF" if status == 0: text = "OFFLINE"...	[ "def", "set_status", "(", "self", ",", "status", ")", ":", "text", "=", "\"\"", "colour", "=", "\"#FFFFFF\"", "if", "status", "==", "0", ":", "text", "=", "\"OFFLINE\"", "colour", "=", "\"#EF9A9A\"", "elif", "status", "==", "1", ":", "text", "=", "\"ST...	25.26087	16.304348
def _match_derived_terms(self, name): ''' Returns all (random) terms whose named are derived from the specified string. For example, 'condition\|subject' should match the terms with names '1\|subject', 'condition[T.1]\|subject', and so on. Only works for strings with grouping operat...	[ "def", "_match_derived_terms", "(", "self", ",", "name", ")", ":", "if", "'\|'", "not", "in", "name", ":", "return", "None", "patt", "=", "r'^([01]+)[\\s\\+]([^\\\|]+)\\\|(.)'", "intcpt", ",", "pred", ",", "grpr", "=", "re", ".", "search", "(", "patt", ",...	43.962963	26.259259
def prune_directory(self): """Delete any objects that can be loaded and are expired according to the current lifetime setting. A file will be deleted if the following conditions are met: - The file extension matches :py:meth:`bucketcache.backends.Backend.file_extension` - The o...	[ "def", "prune_directory", "(", "self", ")", ":", "glob", "=", "'*.{ext}'", ".", "format", "(", "ext", "=", "self", ".", "backend", ".", "file_extension", ")", "totalsize", "=", "0", "totalnum", "=", "0", "for", "f", "in", "self", ".", "_path", ".", "...	36.75	20.295455
def get_browser_datetime(webdriver): """ Get the current date/time on the web browser as a Python datetime object. This date matches 'new Date();' when ran in JavaScript console. Args: webdriver: Selenium WebDriver instance Returns: datetime - Py...	[ "def", "get_browser_datetime", "(", "webdriver", ")", ":", "js_stmt", "=", "\"\"\"\n var wtf_get_date = new Date();\n return {'month':wtf_get_date.getMonth(), \n 'day':wtf_get_date.getDate(), \n 'year':wtf_get_date.getFullYear(),\n ...	44.028571	17.514286
def sunrise_sunset(ephemeris, topos): """Build a function of time that returns whether the sun is up. The function that this returns will expect a single argument that is a :class:`~skyfield.timelib.Time` and will return ``True`` if the sun is up, else ``False``. """ sun = ephemeris['sun'] ...	[ "def", "sunrise_sunset", "(", "ephemeris", ",", "topos", ")", ":", "sun", "=", "ephemeris", "[", "'sun'", "]", "topos_at", "=", "(", "ephemeris", "[", "'earth'", "]", "+", "topos", ")", ".", "at", "def", "is_sun_up_at", "(", "t", ")", ":", "\"\"\"Retur...	33.368421	19.947368
def _import_templates(force=False): """Import templates from disk into database Reads all templates from disk and adds them to the database. By default, any template that has been modified by the user will not be updated. This can however be changed by setting `force` to `True`, which causes all templates ...	[ "def", "_import_templates", "(", "force", "=", "False", ")", ":", "tmplpath", "=", "os", ".", "path", ".", "join", "(", "resource_filename", "(", "'cloud_inquisitor'", ",", "'data'", ")", ",", "'templates'", ")", "disk_templates", "=", "{", "f", ":", "os",...	38.566667	21.766667
def adjoint(self): """Return the adjoint operator.""" if not self.is_linear: raise ValueError('operator with nonzero pad_const ({}) is not' ' linear and has no adjoint' ''.format(self.pad_const)) return -PartialDerivative(sel...	[ "def", "adjoint", "(", "self", ")", ":", "if", "not", "self", ".", "is_linear", ":", "raise", "ValueError", "(", "'operator with nonzero pad_const ({}) is not'", "' linear and has no adjoint'", "''", ".", "format", "(", "self", ".", "pad_const", ")", ")", "return"...	46.818182	19.727273
def subdivide(name, rgstr_stamps=None, save_itrs=SET['SI']): """ Induce a new subdivision--a lower level in the timing hierarchy. Subsequent calls to methods like stamp() operate on this new level. Notes: If rgstr_stamps is used, the collection is passed through set() for uniqueness, an...	[ "def", "subdivide", "(", "name", ",", "rgstr_stamps", "=", "None", ",", "save_itrs", "=", "SET", "[", "'SI'", "]", ")", ":", "_auto_subdivide", "(", "name", ",", "rgstr_stamps", ",", "save_itrs", ")", "f", ".", "t", ".", "is_user_subdvsn", "=", "True" ]	47.818182	29.636364
def _sort_policy(doc): ''' List-type sub-items in policies don't happen to be order-sensitive, but compare operations will render them unequal, leading to non-idempotent state runs. We'll sort any list-type subitems before comparison to reduce the likelihood of false negatives. ''' if isins...	[ "def", "_sort_policy", "(", "doc", ")", ":", "if", "isinstance", "(", "doc", ",", "list", ")", ":", "return", "sorted", "(", "[", "_sort_policy", "(", "i", ")", "for", "i", "in", "doc", "]", ")", "elif", "isinstance", "(", "doc", ",", "(", "dict", ...	43.083333	23.583333
def header_match(cls, header): ''' Parse the 4-line (320-byte) library member header. ''' mo = cls.header_re.match(header) if mo is None: msg = f'Expected {cls.header_re.pattern!r}, got {header!r}' raise ValueError(msg) return { 'name':...	[ "def", "header_match", "(", "cls", ",", "header", ")", ":", "mo", "=", "cls", ".", "header_re", ".", "match", "(", "header", ")", "if", "mo", "is", "None", ":", "msg", "=", "f'Expected {cls.header_re.pattern!r}, got {header!r}'", "raise", "ValueError", "(", ...	38.5	14.944444
def view_property( prop ): """Wrapper for attributes of a View class which auto-dereferences Refs. Equivalent to setting a property on the class with the getter wrapped with property_get(), and the setter wrapped with property_set(). prop A string containing the name of the class attribute...	[ "def", "view_property", "(", "prop", ")", ":", "def", "getter", "(", "self", ")", ":", "return", "property_get", "(", "getattr", "(", "self", ",", "prop", ")", ",", "self", ".", "parent", ")", "def", "setter", "(", "self", ",", "value", ")", ":", "...	34.75	23.625
def wait_for_process_termination(process, timeout=10): """ Wait for a process terminate, and raise asyncio.TimeoutError in case of timeout. In theory this can be implemented by just: yield from asyncio.wait_for(self._iou_process.wait(), timeout=100) But it's broken before Python 3.4: http:...	[ "def", "wait_for_process_termination", "(", "process", ",", "timeout", "=", "10", ")", ":", "if", "sys", ".", "version_info", ">=", "(", "3", ",", "5", ")", ":", "try", ":", "yield", "from", "asyncio", ".", "wait_for", "(", "process", ".", "wait", "(",...	29.666667	17.148148
def set_id_format(portal, format): """Sets the id formatting in setup for the format provided """ bs = portal.bika_setup if 'portal_type' not in format: return logger.info("Applying format {} for {}".format(format.get('form', ''), format.get...	[ "def", "set_id_format", "(", "portal", ",", "format", ")", ":", "bs", "=", "portal", ".", "bika_setup", "if", "'portal_type'", "not", "in", "format", ":", "return", "logger", ".", "info", "(", "\"Applying format {} for {}\"", ".", "format", "(", "format", "....	36.055556	14.777778

def _format_lon(self, lon): ''' Returned a formated longitude format for the file ''' if self.ppd in [4, 16, 64, 128]: return None else: return map(lambda x: "{0:0>3}".format(int(x)), self._map_center('long', lon))

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42.833333

21.833333

def decryption_statem(self, ciphertext_in, key_in, reset): """ Builds a multiple cycle AES Decryption state machine circuit :param reset: a one bit signal telling the state machine to reset and accept the current plaintext and key :return ready, plain_text: ready is a one bit ...

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39.054545

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def setEnabled(self, state): """ Updates the drop shadow effect for this widget on enable/disable state change. :param state | <bool> """ super(XToolButton, self).setEnabled(state) self.updateUi()

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27.5

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def copy(self): """ Prepare and paste self templates. """ templates = self.prepare_templates() if self.params.interactive: keys = list(self.parser.default) for key in keys: if key.startswith('_'): continue prompt = "{0} ...

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36.875

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def SETE(cpu, dest): """ Sets byte if equal. :param cpu: current CPU. :param dest: destination operand. """ dest.write(Operators.ITEBV(dest.size, cpu.ZF, 1, 0))

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25.25

12.75

def _uminumaxvmin(self,*args,**kwargs): """ NAME: _uminumaxvmin PURPOSE: evaluate u_min, u_max, and v_min INPUT: Either: a) R,vR,vT,z,vz b) Orbit instance: initial condition used if that's it, orbit(t) if there...

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42.695652

14.565217

def get_configurations_on_targets(self, target_name=None, configuration_name=None): """ Retrieves all configuration given a name on the specified target :param target_name: Searches for a specific target name or a list of target names. If None all targets are used :param configuration_na...

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64.571429

34.142857

def restart(self): """ Restarts the whole wizard from the beginning. """ # hide all of the pages for page in self._pages.values(): page.hide() pageId = self.startId() try: first_page = self._pages[pageId] except KeyError: ...

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34.795455

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def records(): """Load test data fixture.""" import uuid from invenio_records.api import Record from invenio_pidstore.models import PersistentIdentifier, PIDStatus create_test_user() indexer = RecordIndexer() # Record 1 - Live record with db.session.begin_nested(): rec_uuid = ...

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28.5

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def compare(buf_a, buf_b, ignore): """Compare of two Buffer item""" for field in getattr(buf_a, '_fields_'): name, types = field[0], field[1] if name in ignore: continue val_a = getattr(buf_a, name) val_b = getattr(buf_b, name) if isinstance(types, (type(Un...

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30.481481

15.814815

def _render_uncached_items(self, items, result): """ Render a list of items, that didn't exist in the cache yet. """ for contentitem in items: # Render the item. # Allow derived classes to skip it. try: output = self.render_item(content...

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39

17.695652

def _check_link_completion(self, link, fail_pending=False, fail_running=False): """Internal function to check the completion of all the dispatched jobs Returns ------- status_vect : `JobStatusVector` Vector that summarize the number of jobs in various states. """ ...

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39.419355

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def to_pybel(self): """ Produce a Pybel Molecule object. It is based on the capabilities of OpenBabel through Pybel. The present object must have at least `atomcoords`, `atomnos`, `charge` and `mult` defined. Returns ------- `pybel.Molecule` Exa...

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31.945946

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def _getFieldStats(self): """ Method which returns a dictionary of field statistics received from the input source. Returns: fieldStats: dict of dicts where the first level is the field name and the second level is the statistic. ie. fieldStats['pounds']['min'] """ fieldStats =...

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29.55

22.55

def make_table(grid): """ Make a RST-compatible table From http://stackoverflow.com/a/12539081 """ cell_width = 2 + max( reduce( lambda x, y: x+y, [[len(item) for item in row] for row in grid], [] ) ) num_cols = len(grid[0]) rst = table_div(num_cols, cell_width,...

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26.809524

19.857143

def save_group(self, group): """ Group was saved. """ # If group already exists, take over existing group rather then error. try: lgroup = self._get_group(group.name) changes = changeset(lgroup, {}) except ObjectDoesNotExist: lgroup = self._group_class...

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33.5

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def update(self, feedforwardInputI, feedforwardInputE, v, recurrent=True, envelope=False, iSpeedTuning=False, enforceDale=True): """ Do one update of the CAN network, of length self.dt. :param feedforwardInputI: The feedforward input to inhibitory cells. :param feedforwardInputR: The feedfo...

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44.054054

22.378378

def stop(self): '''Stop the rpc server.''' if self.uiautomator_process and self.uiautomator_process.poll() is None: res = None try: res = urllib2.urlopen(self.stop_uri) self.uiautomator_process.wait() except: self.uiauto...

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39.545455

20.454545

def index_in_tree(self, cmd_path): """ Return the start index of which the element is not in cmd tree. :type cmd_path: list or tuple :return: None if cmd_path already indexed in tree. """ current_tree = self.tree for key in cmd_path: if key in current_...

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35.923077

11.615385

def extract_time_info(text): """ Extract valid time(-range) information from a string according to our specs. Args: text (text_type): Raw string containing encoded time(-span) information. Date/Time-combinations are expected in a ``YYYY-MM-DD hh:mm`` format. Relative times ...

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36.754902

22.617647

def hexists(key, field, host=None, port=None, db=None, password=None): ''' Determine if a hash fields exists. .. versionadded:: 2017.7.0 CLI Example: .. code-block:: bash salt '*' redis.hexists foo_hash bar_field ''' server = _connect(host, port, db, password) return server.h...

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23.214286

23.357143

def findPrev( self ): """ Looks for the previous occurance of the current search text. """ text = self.uiFindTXT.text() view = self.currentWebView() options = QWebPage.FindWrapsAroundDocument options |= QWebPage.FindBackward if...

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32.571429

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def tilequeue_tile_status(cfg, peripherals, args): """ Report the status of the given tiles in the store, queue and TOI. """ logger = make_logger(cfg, 'tile_status') # friendly warning to avoid confusion when this command outputs nothing # at all when called with no positional arguments. if...

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33.745098

20.607843

def update_deps( self ): """Update dependencies on all the fields on this Block instance.""" klass = self.__class__ for name in klass._fields: self.update_deps_on_field( name ) return

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31.714286

14.714286

def parseAttributes(self, attributes=None, **kwAttributes): """Parses CSS attribute source strings, and return as an inline stylesheet. Use to parse a tag's highly CSS-based attributes like 'font'. See also: parseSingleAttr """ attributes = attributes if attributes is not None e...

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35.923077

19.692308

def resource_group_absent(name, connection_auth=None): ''' .. versionadded:: 2019.2.0 Ensure a resource group does not exist in the current subscription. :param name: Name of the resource group. :param connection_auth: A dict with subscription and authentication parameters to be u...

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29.349206

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def render(self, **kwargs): """ Plots the surface and the control points grid. """ # Calling parent function super(VisSurface, self).render(**kwargs) # Initialize a list to store VTK actors vtk_actors = [] # Start plotting for plot in self._plots: # ...

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53.529412

25.568627

def generate_account(self, services, resource_types, permission, expiry, start=None, ip=None, protocol=None): ''' Generates a shared access signature for the account. Use the returned signature with the sas_token parameter of the service or to create a new accou...

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58.269231

28.846154

def ip_interfaces(): ''' Provide a dict of the connected interfaces and their ip addresses The addresses will be passed as a list for each interface ''' # Provides: # ip_interfaces if salt.utils.platform.is_proxy(): return {} ret = {} ifaces = _get_interfaces() for fa...

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31.461538

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def calc_next_run(self): """Calculate next run time of this task""" base_time = self.last_run if self.last_run == HAS_NOT_RUN: if self.wait_for_schedule is False: self.next_run = timezone.now() self.wait_for_schedule = False # reset so we don't run on ...

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41.076923

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def _run_mplp(self, no_iterations): """ Updates messages until either Mplp converges or if doesn't converges; halts after no_iterations. Parameters -------- no_iterations: integer Number of maximum iterations that we want MPLP to run. """ ...

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49.4

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def createqtconf(): """Create a qt.conf file next to the current executable""" template = """[Paths] Prefix = {path} Binaries = {path} """ import PyQt5 exedir = os.path.dirname(sys.executable) qtpath = os.path.join(exedir, "qt.conf") pyqt5path = os.path.abspath(PyQt5.__file__) binpath = o...

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23.4

19.5

def generate_warning_text(self): """ generates warnings for the current specimen then adds them to the current warning text for the GUI which will be rendered on a call to update_warning_box. """ self.warning_text = "" if self.s in list(self.pmag_results_data['spe...

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62.816667

29.35

def _euler_to_dcm(self, euler): """ Create DCM (Matrix3) from euler angles :param euler: array [roll, pitch, yaw] in rad :returns: Matrix3 """ assert(len(euler) == 3) m = Matrix3() m.from_euler(*euler) return m

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27.3

10.7

def _GetTimeElementsTuple(self, structure): """Retrieves a time elements tuple from the structure. Args: structure (pyparsing.ParseResults): structure of tokens derived from a line of a text file. Returns: tuple: containing: year (int): year. month (int): month, where...

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33.111111

20.481481

def content(): """Helper method that returns just the content. This method was added so that the text could be reused in the dock_help module. .. versionadded:: 3.2.2 :returns: A message object without brand element. :rtype: safe.messaging.message.Message """ message = m.Message() ...

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32.744186

22.744186

def update(self, access_token=None, id_token=None, id_token_jwt=None, userinfo=None): """ Args: access_token (str) id_token (Mapping[str, str]) id_token_jwt (str) userinfo (Mapping[str, str]) """ def set_if_defined(session_key, value): ...

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34.409091

16.136364

def is_entailed_by(self, other): """ Whether all of self's keys (and values) are in (and within) other's """ for (s_key, s_val) in self: if s_key in other: if not other[s_key].entails(s_val): return False else: r...

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31

12.090909

def _find_udf_record(self, udf_path): # type: (bytes) -> Tuple[Optional[udfmod.UDFFileIdentifierDescriptor], udfmod.UDFFileEntry] ''' An internal method to find an directory record on the ISO given a UDF path. If the entry is found, it returns the directory record object corresp...

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36.333333

23

def log(stats_resource=None, stats_source=None, log_level=DEFAULT_LOG_LEVEL, **kwargs): """Utility to log given stats to *stats* logger. Stats to log are given by `stats_source` and in its absence we log `kwargs`. *stats* logger is configured independently from any logger. Only stats should be ...

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39.9

21.675

def reverse_compl_with_name(old_seq): """Reverse a SeqIO sequence, but keep its name intact.""" new_seq = old_seq.reverse_complement() new_seq.id = old_seq.id new_seq.description = old_seq.description return new_seq

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38.333333

7.5

def load_rml(self, rml_name): """ loads an rml mapping into memory args: rml_name(str): the name of the rml file """ conn = CFG.rml_tstore cache_path = os.path.join(CFG.CACHE_DATA_PATH, 'rml_files', rml_name) if not os.path.exists(cache_path): res...

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39.470588

15.764706

def updateTimeline(self, time, state='stopped', duration=None): """ Set the timeline progress for this video. Parameters: time (int): milliseconds watched state (string): state of the video, default 'stopped' duration (int): duration of the item ...

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43.117647

18.882353

def _generate_struct_cstor_signature(self, struct): """Emits struct standard constructor signature to be used in the struct's header file.""" fields = struct.all_fields self.emit(comment_prefix) description_str = 'Full constructor for the struct (exposes all instance variables).' ...

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46.68

14.48

def materials(self): """ Property for accessing :class:`MaterialManager` instance, which is used to manage materials. :rtype: yagocd.resources.material.MaterialManager """ if self._material_manager is None: self._material_manager = MaterialManager(session=self._sessi...

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39.222222

19.666667

def setup_interpolant(self): """Initializes the z(d) interpolation.""" # for computing nearby (z < 1) redshifts zs = numpy.linspace(0., 1., num=self.numpoints) ds = self.cosmology.luminosity_distance(zs).value self.nearby_d2z = interpolate.interp1d(ds, zs, kind='linear', ...

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54

15.133333

def post(self, request, bot_id, format=None): """ Add a new environment variable --- serializer: EnvironmentVarSerializer responseMessages: - code: 401 message: Not authenticated - code: 400 message: Not valid request ""...

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32.25

10.416667

def resizeEvent(self, event): """Mark repaint needed. :qtdoc:`Re-implemented<QWidget.resizeEvent>`""" self._viewIsDirty = True super(StimulusView, self).resizeEvent(event)

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48

7.75

def iterable(self, iterable_name, *, collection, attribute, word, func=None, operation=None): """ Performs a filter with the OData 'iterable_name' keyword on the collection For example: q.iterable('any', collection='email_addresses', attribute='address', operati...

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37.469388

22.469388

def increment_day_start_ut(self, day_start_ut, n_days=1): """Increment the GTFS-definition of "day start". Parameters ---------- day_start_ut : int unixtime of the previous start of day. If this time is between 12:00 or greater, there *will* be bugs. To solve t...

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42.368421

18.315789

def woa_track_from_file(d, lat, lon, filename, varnames=None): """ Temporary solution: WOA for surface track """ d = np.asanyarray(d) lat = np.asanyarray(lat) lon = np.asanyarray(lon) lon[lon < 0] += 360 doy = np.array([int(dd.strftime('%j')) for dd in d]) nc = netCDF4.Dataset(expandu...

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29.405405

20.972973

def stop(self): """ Stop the monitoring thread of the plugin. The super-class will send the stop signal on the monitor-IP queue, which prompts the loop to stop. """ super(Tcp, self).stop() self.monitor_thread.join() logging.info("TCP health monitor plugi...

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29.272727

16.545455

def addvPPfunc(self,solution): ''' Adds the marginal marginal value function to an existing solution, so that the next solver can evaluate vPP and thus use cubic interpolation. Parameters ---------- solution : ConsumerSolution The solution to this single peri...

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36.9

24.7

def get_user_metadata( self, bucket: str, key: str ) -> typing.Dict[str, str]: """ Retrieves the user metadata for a given object in a given bucket. If the platform has any mandatory prefixes or suffixes for the metadata keys, they should be stripped befo...

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40.096774

20.354839

def add_fields(self, *args): """ This method only works for extensible fields. It allows to add values without precising their fields' names or indexes. Parameters ---------- args: field values """ if not self.is_extensible(): raise TypeError(...

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29.5

23.5

def _compute(self, inputs, dates, assets, mask): """ Compute by delegating to self._wrapped_term._compute on sample dates. On non-sample dates, forward-fill from previously-computed samples. """ to_sample = dates[select_sampling_indices(dates, self._frequency)] assert to...

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40.333333

20.025641

def plot_oneD(dataset, vars, filename, bins=60): """ Plot 1D marginalised posteriors for the 'vars' of interest.""" n = len(vars) fig, axes = plt.subplots(nrows=n, ncols=1, sharex=False, sharey=False) for i, x in en...

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31.684211

16.210526

def add_iterative_predicate(self, key, values_list): """add an iterative predicate with a key and set of values which it can be equal to in and or function. The individual predicates are specified with the type ``equals`` and combined with a type ``or``. The main reason for this...

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41.347826

20.521739

def get_power(self): """Returns the Power in Watt""" power_dict = self.get_power_all() for device in power_dict.keys(): power_dict[device] = float(power_dict[device]) / 1000.0 return power_dict

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38.666667

10.5

def confirmation_option(*param_decls, **attrs): """Shortcut for confirmation prompts that can be ignored by passing ``--yes`` as parameter. This is equivalent to decorating a function with :func:`option` with the following parameters:: def callback(ctx, param, value): if not value:...

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36.107143

17.392857

def get_data(self, create=False): """Get dict stored for current running task. Return `None` or an empty dict if no data was found depending on the `create` argument value. :param create: if argument is `True`, create empty dict for task, default: `False` ...

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38.5

12.5625

def calc_across_paths_textnodes(paths_nodes, dbg=False): """Given a list of parent paths tupled with children textnodes, plus initialized feature values, we calculate the total and average string length of the parent's children textnodes. """ # for (path, [textnodes], # num. of...

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44.5

15.333333

def add_statement(self,statement_obj): """ Adds a statement to the attribution layer @type statement_obj: L{Cstatement} @param statement_obj: the statement object """ if self.attribution_layer is None: self.attribution_layer = Cattribution() self.r...

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41.6

7.8

def after(self, value): """ Sets the operator type to Query.Op.After and sets the value to the amount that this query should be lower than. This is functionally the same as doing the lessThan operation, but is useful for visual queries for things like dates. :p...

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35.2

16.7

def fatal(*tokens: Token, **kwargs: Any) -> None: """ Print an error message and call ``sys.exit`` """ error(*tokens, **kwargs) sys.exit(1)

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37

11.5

def setActiveWindow(self, win): """ Set the given window active (property _NET_ACTIVE_WINDOW) :param win: the window object""" self._setProperty('_NET_ACTIVE_WINDOW', [1, X.CurrentTime, win.id], win)

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36

17

def subclass(self, klass): """True if the Class is a subclass of the given one.""" return bool(lib.EnvSubclassP(self._env, self._cls, klass._cls))

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53.333333

15

def tiny(x): '''Compute the tiny-value corresponding to an input's data type. This is the smallest "usable" number representable in `x`'s data type (e.g., float32). This is primarily useful for determining a threshold for numerical underflow in division or multiplication operations. Parameter...

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22.846154

25.461538

def list_scheduled_queries(self): """ List all scheduled_queries :return: A list of all scheduled query dicts :rtype: list of dict :raises: This will raise a :class:`ServerException<logentries_api.exceptions.ServerException>` if there is an error from Lo...

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37.071429

17.214286

def get_unit_from_dimensions(dimensions, text): """Reconcile a unit based on its dimensionality.""" key = l.get_key_from_dimensions(dimensions) try: unit = l.DERIVED_UNI[key] except KeyError: logging.debug(u'\tCould not find unit for: %s', key) unit = c.Unit(name=build_unit_name...

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35.230769

19.307692

def handle(self, data, **kwargs): """Run marshalling for the specified mapper_class. Supports both .marshal and .many().marshal Kim interfaces. Handles errors raised during marshalling and automatically returns a HTTP error response. :param data: Data to be marshaled. :returns...

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38.458333

16.5

def merge_rdf_list(rdf_list): """ takes an rdf list and merges it into a python list args: rdf_list: the RdfDataset object with the list values returns: list of values """ # pdb.set_trace() if isinstance(rdf_list, list): rdf_list = rdf_list[0] rtn_list = [] # fo...

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27.619048

18.142857

def set_from_template_string(self, string): """ Reads the given template (SMTP formatted) and sets all fields accordingly. :type string: string :param string: The template. """ in_header = True body = '' for line in string.split('\n'): ...

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32.03125

10.84375

def delete_resourcegroup(group_id,**kwargs): """ Add a new group to a scenario. """ group_i = _get_group(group_id) #This should cascaded to delete all the group items. db.DBSession.delete(group_i) db.DBSession.flush() return 'OK'

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25.7

11.7

def execute_cmd_direct(self, userid, cmdStr): """"cmdVM.""" requestData = 'cmdVM ' + userid + ' CMD \'' + cmdStr + '\'' results = self._smt.request(requestData) return results

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40.6

11.6

def find_genome_length(contig_lengths_dict): """ Determine the total length of all the contigs for each strain :param contig_lengths_dict: dictionary of strain name: reverse-sorted list of all contig lengths :return: genome_length_dict: dictionary of strain name: total genome length """ # Initia...

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49.083333

19.416667

def unnest(self, data, fit=False): """ :param data: a dataframe containing a column to be unnested :param fit: if True, self.sequence_length will exactly accomodate the largest sequence length :return: 1D array of values with length = rows * sequence_length """ with timer...

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51.76

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def segment_intersection2(start0, end0, start1, end1): """Image for :func:`.segment_intersection` docstring.""" if NO_IMAGES: return line0 = bezier.Curve.from_nodes(stack1d(start0, end0)) line1 = bezier.Curve.from_nodes(stack1d(start1, end1)) ax = line0.plot(2) line1.plot(2, ax=ax) ...

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def end_timing(self): """ Ends timing of an execution block, calculates elapsed time and updates the associated counter. """ if self._callback != None: elapsed = time.perf_counter() * 1000 - self._start self._callback.end_timing(self._counter, elapsed)

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def install(self, update=False): """ install conda packages """ offline = self.offline or update self.create_env(offline) self.install_pkgs(offline) self.install_pip(offline) return tuple()

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def configure_logging(emit_list): """Configure logging to send log records to the master.""" if 'sphinx' in sys.modules: module_base = 'resolwe.flow.executors' else: module_base = 'executors' logging_config = dict( version=1, formatters={ 'json_formatter': { ...

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def render(template, **context): ''' Render a template with uData frontend specifics * Theme ''' theme = current_app.config['THEME'] return render_theme_template(get_theme(theme), template, **context)

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def is_arxiv(obj): """Return ``True`` if ``obj`` contains an arXiv identifier. The ``idutils`` library's ``is_arxiv`` function has been modified here to work with two regular expressions instead of three and adding a check for valid arxiv categories only""" arxiv_test = obj.split() if not arxiv...

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def output(self, original_filename): """ _filename is not used Args: _filename(string) """ for contract in self.contracts: for function in contract.functions + contract.modifiers: filename = "{}-{}-{}.dot".format(original_filen...

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def delete_node(self, root, key): """ :type root: TreeNode :type key: int :rtype: TreeNode """ if not root: return None if root.val == key: if root.left: # Find the right most leaf of the left sub-tree left_right_most =...

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def from_product(cls, iterables, sortorder=None, names=None): """ Make a MultiIndex from the cartesian product of multiple iterables. Parameters ---------- iterables : list / sequence of iterables Each iterable has unique labels for each level of the index. s...

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def modify(board, opts=None): """ Reset an existing board using the given options. :param board: the board to reset :param opts: dictionary mapping str->Opt :return: None """ opts = get_opts(opts) if opts['board'] is not None: board.tiles = _read_tiles_from_string(opts['board']) ...

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def set_status(self, status): """ Updates the status text Args: status (int): The offline/starting/online status of Modis 0: offline, 1: starting, 2: online """ text = "" colour = "#FFFFFF" if status == 0: text = "OFFLINE"...

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def _match_derived_terms(self, name): ''' Returns all (random) terms whose named are derived from the specified string. For example, 'condition|subject' should match the terms with names '1|subject', 'condition[T.1]|subject', and so on. Only works for strings with grouping operat...

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def prune_directory(self): """Delete any objects that can be loaded and are expired according to the current lifetime setting. A file will be deleted if the following conditions are met: - The file extension matches :py:meth:`bucketcache.backends.Backend.file_extension` - The o...

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def get_browser_datetime(webdriver): """ Get the current date/time on the web browser as a Python datetime object. This date matches 'new Date();' when ran in JavaScript console. Args: webdriver: Selenium WebDriver instance Returns: datetime - Py...

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def sunrise_sunset(ephemeris, topos): """Build a function of time that returns whether the sun is up. The function that this returns will expect a single argument that is a :class:`~skyfield.timelib.Time` and will return ``True`` if the sun is up, else ``False``. """ sun = ephemeris['sun'] ...

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def _import_templates(force=False): """Import templates from disk into database Reads all templates from disk and adds them to the database. By default, any template that has been modified by the user will not be updated. This can however be changed by setting `force` to `True`, which causes all templates ...

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def adjoint(self): """Return the adjoint operator.""" if not self.is_linear: raise ValueError('operator with nonzero pad_const ({}) is not' ' linear and has no adjoint' ''.format(self.pad_const)) return -PartialDerivative(sel...

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def subdivide(name, rgstr_stamps=None, save_itrs=SET['SI']): """ Induce a new subdivision--a lower level in the timing hierarchy. Subsequent calls to methods like stamp() operate on this new level. Notes: If rgstr_stamps is used, the collection is passed through set() for uniqueness, an...

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def _sort_policy(doc): ''' List-type sub-items in policies don't happen to be order-sensitive, but compare operations will render them unequal, leading to non-idempotent state runs. We'll sort any list-type subitems before comparison to reduce the likelihood of false negatives. ''' if isins...

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def header_match(cls, header): ''' Parse the 4-line (320-byte) library member header. ''' mo = cls.header_re.match(header) if mo is None: msg = f'Expected {cls.header_re.pattern!r}, got {header!r}' raise ValueError(msg) return { 'name':...

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def view_property( prop ): """Wrapper for attributes of a View class which auto-dereferences Refs. Equivalent to setting a property on the class with the getter wrapped with property_get(), and the setter wrapped with property_set(). prop A string containing the name of the class attribute...

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def wait_for_process_termination(process, timeout=10): """ Wait for a process terminate, and raise asyncio.TimeoutError in case of timeout. In theory this can be implemented by just: yield from asyncio.wait_for(self._iou_process.wait(), timeout=100) But it's broken before Python 3.4: http:...

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def set_id_format(portal, format): """Sets the id formatting in setup for the format provided """ bs = portal.bika_setup if 'portal_type' not in format: return logger.info("Applying format {} for {}".format(format.get('form', ''), format.get...

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