chrom stringclasses 12
values | pos int64 36.1k 249M | ref stringclasses 4
values | alt stringclasses 4
values | label bool 2
classes | subset stringclasses 8
values | match_group int64 0 2.16k | rsid stringlengths 3 15 | pip float64 0 1 | traits stringclasses 279
values | MAF float64 0 0.5 | ld_score float64 1.01 3.79k | consequence stringclasses 13
values | consequence_cre stringclasses 29
values | exon_closest_pc_gene_id stringlengths 15 15 | distance_exon_pc int64 0 1.68M | exon_closest_nc_gene_id stringlengths 15 15 | distance_exon_nc int64 0 507k | distance_exon int64 0 507k | exon_closest_gene_id stringlengths 15 15 | consequence_final stringclasses 28
values | tss_closest_pc_gene_id stringlengths 15 15 | distance_tss_pc int64 0 1.69M | tss_closest_nc_gene_id stringlengths 15 15 | distance_tss_nc int64 0 531k | distance_tss int64 0 531k | tss_closest_gene_id stringlengths 15 15 | consequence_group stringclasses 8
values | distance_tss_pc_bin stringclasses 4
values | distance_exon_pc_bin stringclasses 7
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15 | 75,768,876 | G | C | false | distal | 684 | rs78359276 | 0.000672 | 0.286 | 161.73 | intergenic_variant | intergenic_variant | ENSG00000182950 | 41,187 | ENSG00000260288 | 5,553 | 5,553 | ENSG00000260288 | intergenic_variant | ENSG00000182950 | 44,834 | ENSG00000260288 | 6,350 | 6,350 | ENSG00000260288 | distal | NA | NA | |
15 | 75,859,965 | C | T | false | missense_variant | 623 | rs755614652 | 0.00015 | 0.000472 | 7.9854 | missense_variant | missense_variant | ENSG00000140367 | 0 | ENSG00000140367 | 79 | 0 | ENSG00000140367 | missense_variant | ENSG00000140367 | 24 | ENSG00000140367 | 8,985 | 24 | ENSG00000140367 | missense_variant | NA | NA | |
15 | 75,932,902 | G | A | true | missense_variant | 623 | rs192172561 | 1 | Height | 0.000037 | 16.145 | missense_variant | missense_variant | ENSG00000167196 | 0 | ENSG00000167196 | 0 | 0 | ENSG00000167196 | missense_variant | ENSG00000167196 | 101 | ENSG00000169752 | 9,869 | 101 | ENSG00000167196 | missense_variant | NA | NA |
15 | 76,009,564 | G | A | true | tss_proximal | 686 | rs145727191 | 0.952915 | Urea | 0.026925 | 37.236 | intron_variant | dELS_flank | ENSG00000169752 | 270 | ENSG00000169752 | 268 | 268 | ENSG00000169752 | tss_proximal | ENSG00000169752 | 2,859 | ENSG00000169752 | 268 | 268 | ENSG00000169752 | tss_proximal | tss_prox:b2 | tss_prox:b1 |
15 | 76,160,135 | C | G | false | missense_variant | 620 | rs149378942 | 0.001201 | 0.002773 | 16.645 | missense_variant | missense_variant | ENSG00000169758 | 0 | ENSG00000169758 | 0 | 0 | ENSG00000169758 | missense_variant | ENSG00000169758 | 100,149 | ENSG00000259422 | 21,350 | 21,350 | ENSG00000259422 | missense_variant | NA | NA | |
15 | 76,179,355 | G | A | false | distal | 640 | rs117836106 | 0.000273 | 0.045374 | 116.93 | intron_variant | dELS_flank | ENSG00000169758 | 3,680 | ENSG00000259422 | 570 | 570 | ENSG00000259422 | dELS_flank | ENSG00000169758 | 119,369 | ENSG00000259422 | 2,130 | 2,130 | ENSG00000259422 | distal | NA | NA | |
15 | 76,663,289 | T | C | false | distal | 640 | rs74026038 | 0.000161 | 0.040918 | 117.19 | intron_variant | dELS_flank | ENSG00000140386 | 2,363 | ENSG00000140386 | 2,363 | 2,363 | ENSG00000140386 | dELS_flank | ENSG00000140386 | 111,774 | ENSG00000140386 | 2,368 | 2,368 | ENSG00000140386 | distal | NA | NA | |
15 | 76,887,738 | A | C | false | distal | 669 | rs62029247 | 0.00004 | 0.065381 | 415.19 | intron_variant | dELS | ENSG00000140386 | 3,861 | ENSG00000140386 | 3,861 | 3,861 | ENSG00000140386 | dELS | ENSG00000140386 | 3,861 | ENSG00000140386 | 17,598 | 3,861 | ENSG00000140386 | distal | NA | NA | |
15 | 77,018,522 | C | T | false | missense_variant | 623 | rs201872851 | 0.000101 | 0.000608 | 11.848 | missense_variant | missense_variant | ENSG00000140368 | 0 | ENSG00000140368 | 0 | 0 | ENSG00000140368 | missense_variant | ENSG00000140368 | 63 | ENSG00000140368 | 9,202 | 63 | ENSG00000140368 | missense_variant | NA | NA | |
15 | 77,019,298 | G | A | false | tss_proximal | 664 | rs62007209 | 0.002508 | 0.2473 | 150.93 | intron_variant | dELS | ENSG00000140368 | 766 | ENSG00000140368 | 766 | 766 | ENSG00000140368 | tss_proximal | ENSG00000140368 | 839 | ENSG00000140368 | 8,426 | 839 | ENSG00000140368 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 77,083,841 | C | A | true | splicing | 687 | rs17466257 | 0.98731 | NAP | 0.39666 | 269.98 | splice_donor_region_variant | splice_donor_region_variant | ENSG00000140391 | 5 | ENSG00000140391 | 12,731 | 5 | ENSG00000140391 | splice_donor_region_variant | ENSG00000140391 | 142 | ENSG00000140391 | 12,731 | 142 | ENSG00000140391 | splicing | NA | splicing:b1 |
15 | 77,260,975 | G | A | false | distal | 653 | rs529724342 | 0.000042 | 0.001319 | 10.833 | intron_variant | intron_variant | ENSG00000173517 | 5,422 | ENSG00000173517 | 8,448 | 5,422 | ENSG00000173517 | intron_variant | ENSG00000173517 | 5,422 | ENSG00000230459 | 17,489 | 5,422 | ENSG00000173517 | distal | NA | NA | |
15 | 77,261,103 | A | G | false | distal | 653 | rs571846212 | 0.000098 | 0.002201 | 18.146 | intron_variant | intron_variant | ENSG00000173517 | 5,550 | ENSG00000173517 | 8,576 | 5,550 | ENSG00000173517 | intron_variant | ENSG00000173517 | 5,550 | ENSG00000230459 | 17,361 | 5,550 | ENSG00000173517 | distal | NA | NA | |
15 | 77,262,037 | T | C | true | distal | 653 | rs576993910 | 1 | Height | 0.005729 | 24.252 | intron_variant | intron_variant | ENSG00000173517 | 6,484 | ENSG00000173517 | 9,510 | 6,484 | ENSG00000173517 | intron_variant | ENSG00000173517 | 6,484 | ENSG00000230459 | 16,427 | 6,484 | ENSG00000173517 | distal | NA | NA |
15 | 77,263,203 | C | T | false | distal | 653 | rs147455502 | 0.000084 | 0.003307 | 25.468 | intron_variant | intron_variant | ENSG00000173517 | 7,650 | ENSG00000173517 | 10,676 | 7,650 | ENSG00000173517 | intron_variant | ENSG00000173517 | 7,650 | ENSG00000230459 | 15,261 | 7,650 | ENSG00000173517 | distal | NA | NA | |
15 | 77,335,225 | C | G | false | distal | 670 | rs12324016 | 0.000415 | 0.39176 | 334.47 | intron_variant | dELS | ENSG00000173517 | 29,937 | ENSG00000173517 | 11,316 | 11,316 | ENSG00000173517 | dELS | ENSG00000173517 | 79,672 | ENSG00000173517 | 11,405 | 11,405 | ENSG00000173517 | distal | NA | NA | |
15 | 77,380,575 | C | A | false | distal | 638 | rs62007263 | 0.00067 | 0.37341 | 258.43 | intron_variant | dELS_flank | ENSG00000173517 | 15,349 | ENSG00000173517 | 15,349 | 15,349 | ENSG00000173517 | dELS_flank | ENSG00000173517 | 39,524 | ENSG00000173517 | 33,943 | 33,943 | ENSG00000173517 | distal | NA | NA | |
15 | 77,388,516 | A | T | false | distal | 654 | rs191854357 | 0.000076 | 0.003446 | 21.74 | intron_variant | intron_variant | ENSG00000173517 | 23,290 | ENSG00000173517 | 23,290 | 23,290 | ENSG00000173517 | intron_variant | ENSG00000173517 | 31,583 | ENSG00000173517 | 31,577 | 31,577 | ENSG00000173517 | distal | NA | NA | |
15 | 77,388,778 | T | C | true | distal | 654 | rs117101744 | 1 | Height | 0.007027 | 24.107 | intron_variant | intron_variant | ENSG00000173517 | 23,552 | ENSG00000173517 | 23,552 | 23,552 | ENSG00000173517 | intron_variant | ENSG00000173517 | 31,321 | ENSG00000173517 | 31,315 | 31,315 | ENSG00000173517 | distal | NA | NA |
15 | 77,518,398 | A | C | true | distal | 684 | rs56097641 | 1 | Height | 0.27946 | 346.69 | intergenic_variant | intergenic_variant | ENSG00000140382 | 32,794 | ENSG00000259362 | 7,141 | 7,141 | ENSG00000259362 | intergenic_variant | ENSG00000140382 | 40,104 | ENSG00000259362 | 7,141 | 7,141 | ENSG00000259362 | distal | NA | NA |
15 | 77,570,853 | C | T | false | distal | 639 | rs11630235 | 0.000347 | 0.26156 | 265.09 | intron_variant | dELS_flank | ENSG00000169783 | 42,173 | ENSG00000259420 | 1,397 | 1,397 | ENSG00000259420 | dELS_flank | ENSG00000169783 | 62,058 | ENSG00000259420 | 1,882 | 1,882 | ENSG00000259420 | distal | NA | NA | |
15 | 77,573,213 | C | T | true | distal | 639 | rs8039399 | 1 | Height | 0.25878 | 266.13 | intron_variant | dELS_flank | ENSG00000169783 | 39,813 | ENSG00000259420 | 175 | 175 | ENSG00000259420 | dELS_flank | ENSG00000169783 | 59,698 | ENSG00000259420 | 4,242 | 4,242 | ENSG00000259420 | distal | NA | NA |
15 | 77,574,788 | A | G | false | distal | 639 | rs11635834 | 0.000396 | 0.26071 | 265.53 | intron_variant | dELS_flank | ENSG00000169783 | 38,238 | ENSG00000259420 | 1,750 | 1,750 | ENSG00000259420 | dELS_flank | ENSG00000169783 | 58,123 | ENSG00000259420 | 5,817 | 5,817 | ENSG00000259420 | distal | NA | NA | |
15 | 77,911,627 | T | A | true | distal | 688 | rs7174640 | 1 | Height | 0.05018 | 201.77 | intergenic_variant | TF_flank | ENSG00000167202 | 72,408 | ENSG00000260776 | 2,589 | 2,589 | ENSG00000260776 | TF_flank | ENSG00000167202 | 90,056 | ENSG00000260776 | 4,173 | 4,173 | ENSG00000260776 | distal | NA | NA |
15 | 78,216,573 | G | A | false | distal | 669 | rs72732595 | 0.000094 | 0.066341 | 36.007 | intron_variant | dELS | ENSG00000103740 | 3,073 | ENSG00000103740 | 2,705 | 2,705 | ENSG00000103740 | dELS | ENSG00000103740 | 3,073 | ENSG00000103740 | 17,951 | 3,073 | ENSG00000103740 | distal | NA | NA | |
15 | 78,299,477 | C | A | false | 5_prime_UTR_variant | 631 | rs116871326 | 0.000086 | 0.025903 | 47.428 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000140395 | 0 | ENSG00000140395 | 84 | 0 | ENSG00000140395 | 5_prime_UTR_variant | ENSG00000140395 | 92 | ENSG00000140395 | 119 | 92 | ENSG00000140395 | 5_prime_UTR_variant | NA | NA | |
15 | 78,299,935 | C | T | false | tss_proximal | 662 | rs11635324 | 0.002172 | 0.21748 | 84.749 | upstream_gene_variant | PLS_flank | ENSG00000140395 | 325 | ENSG00000277482 | 10 | 10 | ENSG00000277482 | tss_proximal | ENSG00000140395 | 325 | ENSG00000140395 | 231 | 231 | ENSG00000140395 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 78,300,381 | G | T | false | tss_proximal | 662 | rs11636560 | 0.002322 | 0.21752 | 84.732 | upstream_gene_variant | pELS | ENSG00000140395 | 771 | ENSG00000277482 | 456 | 456 | ENSG00000277482 | tss_proximal | ENSG00000140395 | 771 | ENSG00000140395 | 677 | 677 | ENSG00000140395 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 78,394,189 | G | A | false | distal | 680 | rs55642616 | 0.000569 | 0.16785 | 58.207 | intergenic_variant | dELS | ENSG00000136381 | 43,241 | ENSG00000259413 | 11,033 | 11,033 | ENSG00000259413 | dELS | ENSG00000136381 | 43,241 | ENSG00000259413 | 11,615 | 11,615 | ENSG00000259413 | distal | NA | NA | |
15 | 78,437,910 | A | G | false | tss_proximal | 662 | rs2656070 | 0.00477 | 0.2183 | 200.61 | intron_variant | PLS_flank | ENSG00000136381 | 188 | ENSG00000136381 | 265 | 188 | ENSG00000136381 | tss_proximal | ENSG00000136381 | 305 | ENSG00000136381 | 265 | 265 | ENSG00000136381 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 78,493,977 | C | T | false | missense_variant | 623 | rs147288797 | 0.000125 | 0.000487 | 3.4811 | missense_variant | missense_variant | ENSG00000136381 | 0 | ENSG00000136381 | 0 | 0 | ENSG00000136381 | missense_variant | ENSG00000136381 | 232 | ENSG00000136381 | 10,556 | 232 | ENSG00000136381 | missense_variant | NA | NA | |
15 | 78,497,330 | A | G | false | missense_variant | 623 | rs75639061 | 0.000136 | 0.00003 | 24.494 | missense_variant | missense_variant | ENSG00000136381 | 0 | ENSG00000136381 | 18 | 0 | ENSG00000136381 | missense_variant | ENSG00000136381 | 3,119 | ENSG00000188266 | 10,251 | 3,119 | ENSG00000136381 | missense_variant | NA | NA | |
15 | 78,629,260 | G | A | false | missense_variant | 629 | rs56235003 | 0.000546 | 0.00798 | 18.524 | missense_variant | missense_variant | ENSG00000117971 | 0 | ENSG00000117971 | 92 | 0 | ENSG00000117971 | missense_variant | ENSG00000080644 | 7,964 | ENSG00000259555 | 3,364 | 3,364 | ENSG00000259555 | missense_variant | NA | NA | |
15 | 78,629,887 | T | C | false | missense_variant | 629 | rs56218866 | 0.000116 | 0.004601 | 23.903 | missense_variant | missense_variant | ENSG00000117971 | 0 | ENSG00000117971 | 0 | 0 | ENSG00000117971 | missense_variant | ENSG00000080644 | 8,591 | ENSG00000259555 | 3,991 | 3,991 | ENSG00000259555 | missense_variant | NA | NA | |
15 | 78,631,163 | G | A | false | missense_variant | 621 | rs12914008 | 0.00009 | 0.048974 | 81.579 | missense_variant | missense_variant | ENSG00000117971 | 0 | ENSG00000117971 | 0 | 0 | ENSG00000117971 | missense_variant | ENSG00000080644 | 9,867 | ENSG00000259555 | 5,267 | 5,267 | ENSG00000259555 | missense_variant | NA | NA | |
15 | 78,673,624 | G | A | false | distal | 680 | rs11072783 | 0.002277 | 0.1631 | 163.33 | intron_variant | dELS | ENSG00000117971 | 32,378 | ENSG00000213307 | 12,047 | 12,047 | ENSG00000213307 | dELS | ENSG00000117971 | 32,378 | ENSG00000213307 | 12,047 | 12,047 | ENSG00000213307 | distal | NA | NA | |
15 | 78,759,363 | C | T | true | 3_prime_UTR_variant | 657 | rs112238647 | 0.99182 | TP | 0.063337 | 65.867 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000136378 | 0 | ENSG00000136378 | 4,587 | 0 | ENSG00000136378 | 3_prime_UTR_variant | ENSG00000185787 | 51,123 | ENSG00000136378 | 5,749 | 5,749 | ENSG00000136378 | 3_prime_UTR_variant | NA | NA |
15 | 78,762,577 | G | A | false | splicing | 692 | rs11853054 | 0.009154 | 0.42008 | 381.28 | splice_polypyrimidine_tract_variant | splice_polypyrimidine_tract_variant | ENSG00000136378 | 11 | ENSG00000136378 | 1,373 | 11 | ENSG00000136378 | splice_polypyrimidine_tract_variant | ENSG00000185787 | 47,909 | ENSG00000136378 | 2,535 | 2,535 | ENSG00000136378 | splicing | NA | splicing:b1 | |
15 | 78,897,901 | C | T | false | 3_prime_UTR_variant | 656 | rs35778446 | 0.000051 | 0.033955 | 38.403 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000185787 | 0 | ENSG00000185787 | 386 | 0 | ENSG00000185787 | 3_prime_UTR_variant | ENSG00000185787 | 19,660 | ENSG00000252061 | 1,034 | 1,034 | ENSG00000252061 | 3_prime_UTR_variant | NA | NA | |
15 | 78,944,473 | G | A | false | tss_proximal | 685 | rs11072817 | 0.000218 | 0.2978 | 130.62 | intron_variant | pELS | ENSG00000103811 | 64 | ENSG00000103811 | 64 | 64 | ENSG00000103811 | tss_proximal | ENSG00000103811 | 511 | ENSG00000103811 | 361 | 361 | ENSG00000103811 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
15 | 78,945,667 | T | C | false | tss_proximal | 663 | rs12915232 | 0.000205 | 0.29737 | 130.35 | intron_variant | PLS_flank | ENSG00000103811 | 608 | ENSG00000103811 | 572 | 572 | ENSG00000103811 | tss_proximal | ENSG00000103811 | 608 | ENSG00000103811 | 572 | 572 | ENSG00000103811 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 78,945,669 | A | G | false | tss_proximal | 663 | rs12913968 | 0.000205 | 0.29737 | 130.35 | intron_variant | PLS_flank | ENSG00000103811 | 610 | ENSG00000103811 | 574 | 574 | ENSG00000103811 | tss_proximal | ENSG00000103811 | 610 | ENSG00000103811 | 574 | 574 | ENSG00000103811 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 79,216,044 | T | A | false | distal | 652 | rs9788639 | 0.000375 | 0.47206 | 45.022 | intron_variant | intron_variant | ENSG00000235711 | 66,677 | ENSG00000259234 | 2,684 | 2,684 | ENSG00000259234 | intron_variant | ENSG00000235711 | 66,677 | ENSG00000207695 | 6,255 | 6,255 | ENSG00000207695 | distal | NA | NA | |
15 | 79,216,126 | C | T | false | distal | 652 | rs9788783 | 0.000353 | 0.47133 | 45.035 | intron_variant | intron_variant | ENSG00000235711 | 66,595 | ENSG00000259234 | 2,766 | 2,766 | ENSG00000259234 | intron_variant | ENSG00000235711 | 66,595 | ENSG00000207695 | 6,337 | 6,337 | ENSG00000207695 | distal | NA | NA | |
15 | 79,350,199 | T | A | false | distal | 680 | rs35129644 | 0.000111 | 0.15559 | 102.81 | intron_variant | dELS | ENSG00000166557 | 27,358 | ENSG00000287408 | 12,921 | 12,921 | ENSG00000287408 | dELS | ENSG00000166557 | 39,042 | ENSG00000287408 | 12,921 | 12,921 | ENSG00000287408 | distal | NA | NA | |
15 | 79,808,287 | G | A | false | distal | 670 | rs11630543 | 0.000043 | 0.36512 | 92.667 | intergenic_variant | dELS | ENSG00000136371 | 35,259 | ENSG00000252995 | 9,061 | 9,061 | ENSG00000252995 | dELS | ENSG00000136371 | 88,726 | ENSG00000252995 | 9,162 | 9,162 | ENSG00000252995 | distal | NA | NA | |
15 | 79,898,938 | T | A | true | non_coding_transcript_exon_variant | 689 | rs184575290 | 1 | Mono | 0.003406 | 12.191 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000136371 | 1,558 | ENSG00000180953 | 0 | 0 | ENSG00000180953 | non_coding_transcript_exon_variant | ENSG00000136371 | 1,558 | ENSG00000288592 | 246 | 246 | ENSG00000288592 | non_coding_transcript_exon_variant | NA | NA |
15 | 79,898,996 | A | G | true | non_coding_transcript_exon_variant | 690 | rs139874813 | 0.998585 | Mono | 0.002157 | 8.5087 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000136371 | 1,616 | ENSG00000180953 | 0 | 0 | ENSG00000180953 | non_coding_transcript_exon_variant | ENSG00000136371 | 1,616 | ENSG00000288592 | 188 | 188 | ENSG00000288592 | non_coding_transcript_exon_variant | NA | NA |
15 | 80,016,381 | C | T | false | distal | 639 | rs7172111 | 0.00004 | 0.25107 | 88.154 | downstream_gene_variant | dELS_flank | ENSG00000086666 | 43,186 | ENSG00000279705 | 673 | 673 | ENSG00000279705 | dELS_flank | ENSG00000086666 | 43,186 | ENSG00000279705 | 2,223 | 2,223 | ENSG00000279705 | distal | NA | NA | |
15 | 80,073,403 | T | G | false | tss_proximal | 685 | rs2866367 | 0.000194 | 0.32155 | 127.42 | intron_variant | pELS_flank | ENSG00000086666 | 72 | ENSG00000086666 | 755 | 72 | ENSG00000086666 | tss_proximal | ENSG00000086666 | 812 | ENSG00000086666 | 811 | 811 | ENSG00000086666 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
15 | 80,158,047 | G | A | false | splicing | 692 | rs1370275 | 0.000068 | 0.48888 | 104.37 | splice_polypyrimidine_tract_variant | splice_polypyrimidine_tract_variant | ENSG00000103876 | 12 | ENSG00000103876 | 0 | 0 | ENSG00000103876 | splice_polypyrimidine_tract_variant | ENSG00000103876 | 4,991 | ENSG00000103876 | 54 | 54 | ENSG00000103876 | splicing | NA | splicing:b1 | |
15 | 80,295,824 | A | G | false | distal | 637 | rs73485097 | 0.000349 | 0.17807 | 116.09 | intron_variant | dELS_flank | ENSG00000259417 | 43,610 | ENSG00000259361 | 7,970 | 7,970 | ENSG00000259361 | dELS_flank | ENSG00000259417 | 43,610 | ENSG00000259361 | 45,942 | 43,610 | ENSG00000259417 | distal | NA | NA | |
15 | 80,295,890 | C | G | false | distal | 637 | rs73485101 | 0.000377 | 0.17757 | 118.01 | intron_variant | dELS_flank | ENSG00000259417 | 43,676 | ENSG00000259361 | 8,036 | 8,036 | ENSG00000259361 | dELS_flank | ENSG00000259417 | 43,676 | ENSG00000259361 | 45,876 | 43,676 | ENSG00000259417 | distal | NA | NA | |
15 | 80,309,103 | A | G | false | distal | 682 | rs116383036 | 0.000042 | 0.001047 | 35.9 | intron_variant | CA-CTCF_flank | ENSG00000259417 | 56,889 | ENSG00000259361 | 11,609 | 11,609 | ENSG00000259361 | CA-CTCF_flank | ENSG00000259417 | 56,889 | ENSG00000259361 | 32,663 | 32,663 | ENSG00000259361 | distal | NA | NA | |
15 | 80,402,667 | A | T | false | non_coding_transcript_exon_variant | 690 | rs747469131 | 0.000031 | 0.001376 | 12.866 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000172379 | 1,714 | ENSG00000259495 | 0 | 0 | ENSG00000259495 | non_coding_transcript_exon_variant | ENSG00000172379 | 1,714 | ENSG00000259495 | 292 | 292 | ENSG00000259495 | non_coding_transcript_exon_variant | NA | NA | |
15 | 80,406,225 | G | A | false | distal | 644 | rs75809369 | 0.000171 | 0.15727 | 93.702 | intron_variant | pELS | ENSG00000172379 | 1,678 | ENSG00000172379 | 1,678 | 1,678 | ENSG00000172379 | pELS | ENSG00000172379 | 1,842 | ENSG00000172379 | 1,874 | 1,842 | ENSG00000172379 | distal | NA | NA | |
15 | 80,693,376 | A | T | false | non_coding_transcript_exon_variant | 690 | rs141729002 | 0.000294 | 0.001189 | 5.9939 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000136379 | 1,933 | ENSG00000271983 | 0 | 0 | ENSG00000271983 | non_coding_transcript_exon_variant | ENSG00000136379 | 1,933 | ENSG00000271983 | 330 | 330 | ENSG00000271983 | non_coding_transcript_exon_variant | NA | NA | |
15 | 80,937,093 | C | T | false | tss_proximal | 686 | rs77336371 | 0.000048 | 0.026569 | 78.766 | intron_variant | dELS | ENSG00000103888 | 207 | ENSG00000103888 | 207 | 207 | ENSG00000103888 | tss_proximal | ENSG00000103888 | 3,666 | ENSG00000103888 | 221 | 221 | ENSG00000103888 | tss_proximal | tss_prox:b2 | tss_prox:b1 | |
15 | 80,989,811 | G | A | false | 5_prime_UTR_variant | 630 | rs371076353 | 0.000031 | 0.003041 | 5.0381 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000117899 | 0 | ENSG00000117899 | 0 | 0 | ENSG00000117899 | 5_prime_UTR_variant | ENSG00000117899 | 7 | ENSG00000117899 | 7 | 7 | ENSG00000117899 | 5_prime_UTR_variant | NA | NA | |
15 | 80,999,653 | A | G | false | non_coding_transcript_exon_variant | 689 | rs560962532 | 0.000043 | 0.002916 | 7.045 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000140406 | 1,269 | ENSG00000277782 | 0 | 0 | ENSG00000277782 | non_coding_transcript_exon_variant | ENSG00000140406 | 1,269 | ENSG00000277782 | 327 | 327 | ENSG00000277782 | non_coding_transcript_exon_variant | NA | NA | |
15 | 81,324,106 | G | C | false | 5_prime_UTR_variant | 630 | rs375823762 | 0.000045 | 0.003165 | 9.7658 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000172345 | 0 | ENSG00000172345 | 0 | 0 | ENSG00000172345 | 5_prime_UTR_variant | ENSG00000172345 | 34 | ENSG00000172345 | 34 | 34 | ENSG00000172345 | 5_prime_UTR_variant | NA | NA | |
15 | 81,373,614 | A | C | false | tss_proximal | 663 | rs62035336 | 0.000148 | 0.29569 | 90.524 | intron_variant | PLS_flank | ENSG00000188869 | 374 | ENSG00000188869 | 374 | 374 | ENSG00000188869 | tss_proximal | ENSG00000188869 | 598 | ENSG00000188869 | 541 | 541 | ENSG00000188869 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 81,982,232 | A | G | false | distal | 678 | rs11856043 | 0.000044 | 0.14784 | 111.33 | intron_variant | dELS | ENSG00000183496 | 59,545 | ENSG00000259692 | 3,493 | 3,493 | ENSG00000259692 | dELS | ENSG00000183496 | 63,785 | ENSG00000259692 | 13,433 | 13,433 | ENSG00000259692 | distal | NA | NA | |
15 | 82,093,742 | C | T | false | distal | 639 | rs66855518 | 0.000062 | 0.24662 | 72.57 | intron_variant | dELS_flank | ENSG00000140598 | 36,463 | ENSG00000259518 | 240 | 240 | ENSG00000259518 | dELS_flank | ENSG00000183496 | 47,622 | ENSG00000259518 | 5,050 | 5,050 | ENSG00000259518 | distal | NA | NA | |
15 | 82,151,483 | C | T | false | missense_variant | 621 | rs78664413 | 0.00019 | 0.040275 | 112.93 | missense_variant | missense_variant | ENSG00000140598 | 0 | ENSG00000140598 | 0 | 0 | ENSG00000140598 | missense_variant | ENSG00000140598 | 8,612 | ENSG00000289704 | 8,765 | 8,612 | ENSG00000140598 | missense_variant | NA | NA | |
15 | 82,152,128 | T | C | false | missense_variant | 626 | rs200845475 | 0.000028 | 0.001055 | 5.8607 | missense_variant | missense_variant | ENSG00000140598 | 0 | ENSG00000140598 | 0 | 0 | ENSG00000140598 | missense_variant | ENSG00000140598 | 7,967 | ENSG00000289704 | 8,120 | 7,967 | ENSG00000140598 | missense_variant | NA | NA | |
15 | 82,571,702 | G | A | false | 5_prime_UTR_variant | 630 | rs186230309 | 0.000031 | 0.003226 | 14.252 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000260836 | 0 | ENSG00000214575 | 0 | 0 | ENSG00000260836 | 5_prime_UTR_variant | ENSG00000260836 | 38 | ENSG00000214575 | 81 | 38 | ENSG00000260836 | 5_prime_UTR_variant | NA | NA | |
15 | 82,604,136 | G | T | false | distal | 654 | rs76109880 | 0.000087 | 0.003433 | 21.099 | intron_variant | intron_variant | ENSG00000214575 | 20,673 | ENSG00000214575 | 23,152 | 20,673 | ENSG00000214575 | intron_variant | ENSG00000214575 | 24,015 | ENSG00000260836 | 30,941 | 24,015 | ENSG00000214575 | distal | NA | NA | |
15 | 82,604,137 | C | A | false | distal | 654 | rs74917746 | 0.000084 | 0.003435 | 21.104 | intron_variant | intron_variant | ENSG00000214575 | 20,674 | ENSG00000214575 | 23,151 | 20,674 | ENSG00000214575 | intron_variant | ENSG00000214575 | 24,014 | ENSG00000260836 | 30,942 | 24,014 | ENSG00000214575 | distal | NA | NA | |
15 | 82,604,608 | T | G | false | distal | 654 | rs139409610 | 0.000077 | 0.004434 | 24.892 | intron_variant | intron_variant | ENSG00000214575 | 21,145 | ENSG00000214575 | 22,680 | 21,145 | ENSG00000214575 | intron_variant | ENSG00000214575 | 23,543 | ENSG00000260836 | 31,413 | 23,543 | ENSG00000214575 | distal | NA | NA | |
15 | 82,604,809 | C | T | false | distal | 654 | rs190612642 | 0.000061 | 0.001983 | 8.9954 | intron_variant | intron_variant | ENSG00000214575 | 21,346 | ENSG00000214575 | 22,479 | 21,346 | ENSG00000214575 | intron_variant | ENSG00000214575 | 23,342 | ENSG00000260836 | 31,614 | 23,342 | ENSG00000214575 | distal | NA | NA | |
15 | 82,778,879 | T | G | false | missense_variant | 624 | rs4779061 | 0.000433 | 0.1688 | 196.25 | missense_variant | missense_variant | ENSG00000186628 | 0 | ENSG00000252690 | 21,670 | 0 | ENSG00000186628 | missense_variant | ENSG00000186628 | 27,174 | ENSG00000277864 | 22,933 | 22,933 | ENSG00000277864 | missense_variant | NA | NA | |
15 | 82,868,290 | C | T | false | distal | 649 | rs1256436 | 0.000165 | 0.47134 | 220.66 | intron_variant | intron_variant | ENSG00000103942 | 4,030 | ENSG00000103942 | 4,030 | 4,030 | ENSG00000103942 | intron_variant | ENSG00000103942 | 4,030 | ENSG00000103942 | 15,506 | 4,030 | ENSG00000103942 | distal | NA | NA | |
15 | 82,869,552 | C | G | false | distal | 649 | rs1256438 | 0.000147 | 0.47139 | 220.54 | intron_variant | intron_variant | ENSG00000103942 | 5,292 | ENSG00000103942 | 5,292 | 5,292 | ENSG00000103942 | intron_variant | ENSG00000103942 | 5,292 | ENSG00000103942 | 16,768 | 5,292 | ENSG00000103942 | distal | NA | NA | |
15 | 82,972,601 | G | C | false | distal | 668 | rs11259963 | 0.000301 | 0.47924 | 204 | intron_variant | dELS | ENSG00000169612 | 13,608 | ENSG00000103942 | 12,951 | 12,951 | ENSG00000103942 | dELS | ENSG00000169612 | 13,608 | ENSG00000103942 | 13,266 | 13,266 | ENSG00000103942 | distal | NA | NA | |
15 | 83,052,404 | G | T | false | distal | 648 | rs141956516 | 0.000049 | 0.007447 | 41.908 | intron_variant | intron_variant | ENSG00000064726 | 2,225 | ENSG00000064726 | 3,984 | 2,225 | ENSG00000064726 | intron_variant | ENSG00000064726 | 14,746 | ENSG00000064726 | 4,074 | 4,074 | ENSG00000064726 | distal | NA | NA | |
15 | 83,107,063 | C | G | false | tss_proximal | 663 | rs10152258 | 0.000206 | 0.29777 | 146.43 | intron_variant | PLS | ENSG00000136404 | 508 | ENSG00000286872 | 171 | 171 | ENSG00000286872 | tss_proximal | ENSG00000136404 | 508 | ENSG00000286872 | 171 | 171 | ENSG00000286872 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 83,115,262 | C | T | false | 3_prime_UTR_variant | 655 | rs113474861 | 0.000148 | 0.070429 | 154.68 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000166503 | 0 | ENSG00000136404 | 582 | 0 | ENSG00000166503 | 3_prime_UTR_variant | ENSG00000136404 | 7,550 | ENSG00000260579 | 695 | 695 | ENSG00000260579 | 3_prime_UTR_variant | NA | NA | |
15 | 83,127,055 | A | G | false | tss_proximal | 664 | rs12439903 | 0.000159 | 0.22232 | 364.46 | intron_variant | TF_flank | ENSG00000136404 | 207 | ENSG00000136404 | 207 | 207 | ENSG00000136404 | tss_proximal | ENSG00000136404 | 348 | ENSG00000260579 | 12,488 | 348 | ENSG00000136404 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 83,379,998 | G | A | false | distal | 641 | rs62025955 | 0.000038 | 0.11991 | 85.879 | intron_variant | dELS_flank | ENSG00000140600 | 67,342 | ENSG00000259986 | 59,421 | 59,421 | ENSG00000259986 | dELS_flank | ENSG00000140600 | 67,342 | ENSG00000140600 | 67,229 | 67,229 | ENSG00000140600 | distal | NA | NA | |
15 | 83,416,071 | T | C | false | distal | 654 | rs28695227 | 0.000651 | 0.009126 | 37.606 | intron_variant | intron_variant | ENSG00000140600 | 31,269 | ENSG00000259986 | 23,348 | 23,348 | ENSG00000259986 | intron_variant | ENSG00000140600 | 31,269 | ENSG00000140600 | 31,156 | 31,156 | ENSG00000140600 | distal | NA | NA | |
15 | 83,579,099 | A | G | false | distal | 634 | rs1896799 | 0.000185 | 0.33164 | 112.51 | intron_variant | dELS_flank | ENSG00000140600 | 2,357 | ENSG00000140600 | 2,357 | 2,357 | ENSG00000140600 | dELS_flank | ENSG00000156218 | 74,988 | ENSG00000140600 | 30,170 | 30,170 | ENSG00000140600 | distal | NA | NA | |
15 | 83,982,305 | G | A | false | missense_variant | 627 | rs140206840 | 0.000032 | 0.026026 | 50.683 | missense_variant | missense_variant | ENSG00000156218 | 0 | ENSG00000156218 | 0 | 0 | ENSG00000156218 | missense_variant | ENSG00000184206 | 253,467 | ENSG00000274128 | 20,128 | 20,128 | ENSG00000274128 | missense_variant | NA | NA | |
15 | 84,390,487 | C | T | false | non_coding_transcript_exon_variant | 691 | rs3860265 | 0.003217 | 0.27602 | 503.51 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184206 | 145,128 | ENSG00000259683 | 0 | 0 | ENSG00000259683 | non_coding_transcript_exon_variant | ENSG00000184206 | 152,900 | ENSG00000259683 | 757 | 757 | ENSG00000259683 | non_coding_transcript_exon_variant | NA | NA | |
15 | 84,393,618 | T | G | false | tss_proximal | 693 | rs145699739 | 0.000049 | 0.026754 | 82.203 | intron_variant | CA | ENSG00000184206 | 148,259 | ENSG00000259683 | 25 | 25 | ENSG00000259683 | tss_proximal | ENSG00000184206 | 156,031 | ENSG00000244056 | 453 | 453 | ENSG00000244056 | tss_proximal | tss_prox:b2 | tss_prox:b2 | |
15 | 84,393,995 | C | T | false | tss_proximal | 693 | rs148259527 | 0.000207 | 0.010174 | 48.956 | intron_variant | CA_flank | ENSG00000184206 | 148,636 | ENSG00000244056 | 76 | 76 | ENSG00000244056 | tss_proximal | ENSG00000184206 | 156,408 | ENSG00000244056 | 76 | 76 | ENSG00000244056 | tss_proximal | tss_prox:b2 | tss_prox:b2 | |
15 | 84,394,966 | A | G | false | non_coding_transcript_exon_variant | 691 | rs11632988 | 0.002774 | 0.27655 | 502.52 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184206 | 149,607 | ENSG00000259570 | 0 | 0 | ENSG00000259570 | non_coding_transcript_exon_variant | ENSG00000184206 | 157,379 | ENSG00000259570 | 453 | 453 | ENSG00000259570 | non_coding_transcript_exon_variant | NA | NA | |
15 | 84,398,914 | C | G | false | non_coding_transcript_exon_variant | 691 | rs3803393 | 0.002057 | 0.27463 | 502.88 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184206 | 153,555 | ENSG00000235370 | 0 | 0 | ENSG00000235370 | non_coding_transcript_exon_variant | ENSG00000184206 | 161,327 | ENSG00000235370 | 2,816 | 2,816 | ENSG00000235370 | non_coding_transcript_exon_variant | NA | NA | |
15 | 84,399,266 | A | G | false | non_coding_transcript_exon_variant | 691 | rs3803398 | 0.002816 | 0.27375 | 500.96 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184206 | 153,907 | ENSG00000235370 | 0 | 0 | ENSG00000235370 | non_coding_transcript_exon_variant | ENSG00000184206 | 161,679 | ENSG00000235370 | 2,464 | 2,464 | ENSG00000235370 | non_coding_transcript_exon_variant | NA | NA | |
15 | 84,402,450 | C | T | false | tss_proximal | 693 | rs72750825 | 0.000086 | 0.016837 | 77.249 | intron_variant | CA | ENSG00000184206 | 157,091 | ENSG00000235370 | 198 | 198 | ENSG00000235370 | tss_proximal | ENSG00000184206 | 164,863 | ENSG00000235370 | 718 | 718 | ENSG00000235370 | tss_proximal | tss_prox:b2 | tss_prox:b2 | |
15 | 84,403,620 | G | A | false | non_coding_transcript_exon_variant | 691 | rs12910334 | 0.002718 | 0.27859 | 501.74 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184206 | 158,261 | ENSG00000235370 | 0 | 0 | ENSG00000235370 | non_coding_transcript_exon_variant | ENSG00000184206 | 166,033 | ENSG00000235370 | 1,888 | 1,888 | ENSG00000235370 | non_coding_transcript_exon_variant | NA | NA | |
15 | 84,403,661 | G | A | false | non_coding_transcript_exon_variant | 691 | rs469636 | 0.001564 | 0.27712 | 501.25 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184206 | 158,302 | ENSG00000235370 | 0 | 0 | ENSG00000235370 | non_coding_transcript_exon_variant | ENSG00000184206 | 166,074 | ENSG00000235370 | 1,929 | 1,929 | ENSG00000235370 | non_coding_transcript_exon_variant | NA | NA | |
15 | 84,403,669 | C | T | false | non_coding_transcript_exon_variant | 691 | rs468120 | 0.001293 | 0.28444 | 488.48 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184206 | 158,310 | ENSG00000235370 | 0 | 0 | ENSG00000235370 | non_coding_transcript_exon_variant | ENSG00000184206 | 166,082 | ENSG00000235370 | 1,937 | 1,937 | ENSG00000235370 | non_coding_transcript_exon_variant | NA | NA | |
15 | 84,403,698 | C | T | false | non_coding_transcript_exon_variant | 691 | rs74709462 | 0.002817 | 0.27382 | 500.56 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184206 | 158,339 | ENSG00000235370 | 0 | 0 | ENSG00000235370 | non_coding_transcript_exon_variant | ENSG00000184206 | 166,111 | ENSG00000235370 | 1,966 | 1,966 | ENSG00000235370 | non_coding_transcript_exon_variant | NA | NA | |
15 | 84,405,269 | A | C | false | non_coding_transcript_exon_variant | 691 | rs62029600 | 0.003116 | 0.27477 | 503.05 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000184206 | 159,910 | ENSG00000235370 | 0 | 0 | ENSG00000235370 | non_coding_transcript_exon_variant | ENSG00000184206 | 167,682 | ENSG00000272887 | 2,735 | 2,735 | ENSG00000272887 | non_coding_transcript_exon_variant | NA | NA | |
15 | 84,606,540 | G | T | false | missense_variant | 617 | rs2271433 | 0.000114 | 0.15069 | 250.24 | missense_variant | missense_variant | ENSG00000176371 | 0 | ENSG00000275120 | 76 | 0 | ENSG00000176371 | missense_variant | ENSG00000176371 | 2,638 | ENSG00000176371 | 2,638 | 2,638 | ENSG00000176371 | missense_variant | NA | NA | |
15 | 84,707,022 | C | T | false | distal | 677 | rs4643294 | 0.002026 | 0.27324 | 450.87 | intron_variant | dELS | ENSG00000140612 | 7,708 | ENSG00000140612 | 9,002 | 7,708 | ENSG00000140612 | dELS | ENSG00000140612 | 9,040 | ENSG00000140612 | 9,104 | 9,040 | ENSG00000140612 | distal | NA | NA | |
15 | 84,716,223 | A | T | false | 5_prime_UTR_variant | 631 | rs149297329 | 0.000046 | 0.027028 | 107.12 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000140612 | 0 | ENSG00000140612 | 95 | 0 | ENSG00000140612 | 5_prime_UTR_variant | ENSG00000140612 | 59 | ENSG00000140612 | 95 | 59 | ENSG00000140612 | 5_prime_UTR_variant | NA | NA | |
15 | 84,888,703 | A | C | false | distal | 673 | rs17215920 | 0.000113 | 0.01269 | 106.39 | intron_variant | dELS | ENSG00000156222 | 68 | ENSG00000136383 | 20,490 | 68 | ENSG00000156222 | dELS | ENSG00000156222 | 4,024 | ENSG00000136383 | 25,173 | 4,024 | ENSG00000156222 | distal | NA | NA | |
15 | 84,888,729 | G | A | false | distal | 673 | rs17215899 | 0.000033 | 0.021558 | 41.332 | intron_variant | dELS | ENSG00000156222 | 42 | ENSG00000136383 | 20,516 | 42 | ENSG00000156222 | dELS | ENSG00000156222 | 4,050 | ENSG00000136383 | 25,199 | 4,050 | ENSG00000156222 | distal | NA | NA |
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