chrom stringclasses 12
values | pos int64 36.1k 249M | ref stringclasses 4
values | alt stringclasses 4
values | label bool 2
classes | subset stringclasses 8
values | match_group int64 0 2.16k | rsid stringlengths 3 15 | pip float64 0 1 | traits stringclasses 279
values | MAF float64 0 0.5 | ld_score float64 1.01 3.79k | consequence stringclasses 13
values | consequence_cre stringclasses 29
values | exon_closest_pc_gene_id stringlengths 15 15 | distance_exon_pc int64 0 1.68M | exon_closest_nc_gene_id stringlengths 15 15 | distance_exon_nc int64 0 507k | distance_exon int64 0 507k | exon_closest_gene_id stringlengths 15 15 | consequence_final stringclasses 28
values | tss_closest_pc_gene_id stringlengths 15 15 | distance_tss_pc int64 0 1.69M | tss_closest_nc_gene_id stringlengths 15 15 | distance_tss_nc int64 0 531k | distance_tss int64 0 531k | tss_closest_gene_id stringlengths 15 15 | consequence_group stringclasses 8
values | distance_tss_pc_bin stringclasses 4
values | distance_exon_pc_bin stringclasses 7
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15 | 57,550,185 | G | T | false | 3_prime_UTR_variant | 657 | rs17820443 | 0.000097 | 0.046114 | 33.322 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000128849 | 0 | ENSG00000276772 | 3,769 | 0 | ENSG00000128849 | 3_prime_UTR_variant | ENSG00000263155 | 41,718 | ENSG00000276772 | 3,769 | 3,769 | ENSG00000276772 | 3_prime_UTR_variant | NA | NA | |
15 | 57,578,668 | G | T | true | distal | 668 | rs2635383 | 0.999915 | GGT | 0.48644 | 85.413 | intergenic_variant | dELS | ENSG00000263155 | 13,235 | ENSG00000137878 | 13,364 | 13,235 | ENSG00000263155 | dELS | ENSG00000263155 | 13,235 | ENSG00000137878 | 13,364 | 13,235 | ENSG00000263155 | distal | NA | NA |
15 | 57,768,103 | C | T | false | distal | 678 | rs17240104 | 0.000073 | 0.14602 | 40.63 | intron_variant | dELS | ENSG00000255529 | 50,545 | ENSG00000255529 | 9,491 | 9,491 | ENSG00000255529 | dELS | ENSG00000255529 | 61,374 | ENSG00000255529 | 21,995 | 21,995 | ENSG00000255529 | distal | NA | NA | |
15 | 57,781,373 | C | T | false | distal | 666 | rs188135053 | 0.000095 | 0.002433 | 3.4406 | intron_variant | dELS | ENSG00000255529 | 63,815 | ENSG00000255529 | 202 | 202 | ENSG00000255529 | dELS | ENSG00000255529 | 74,644 | ENSG00000255529 | 35,265 | 35,265 | ENSG00000255529 | distal | NA | NA | |
15 | 58,019,984 | A | G | false | distal | 669 | rs117240207 | 0.000123 | 0.074097 | 159.86 | intron_variant | dELS | ENSG00000128918 | 5,702 | ENSG00000128918 | 5,702 | 5,702 | ENSG00000128918 | dELS | ENSG00000128918 | 5,882 | ENSG00000128918 | 18,597 | 5,882 | ENSG00000128918 | distal | NA | NA | |
15 | 58,023,628 | G | A | false | distal | 653 | rs117052452 | 0.000182 | 0.007794 | 91.228 | intron_variant | intron_variant | ENSG00000128918 | 9,346 | ENSG00000128918 | 9,346 | 9,346 | ENSG00000128918 | intron_variant | ENSG00000128918 | 9,526 | ENSG00000128918 | 14,953 | 9,526 | ENSG00000128918 | distal | NA | NA | |
15 | 58,024,058 | A | C | false | distal | 653 | rs192146680 | 0.000114 | 0.001123 | 3.3699 | intron_variant | intron_variant | ENSG00000128918 | 9,776 | ENSG00000128918 | 9,776 | 9,776 | ENSG00000128918 | intron_variant | ENSG00000128918 | 9,956 | ENSG00000128918 | 14,523 | 9,956 | ENSG00000128918 | distal | NA | NA | |
15 | 58,042,147 | G | A | false | distal | 676 | rs10518961 | 0.000134 | 0.45924 | 197.36 | intron_variant | dELS | ENSG00000128918 | 5,423 | ENSG00000128918 | 3,564 | 3,564 | ENSG00000128918 | dELS | ENSG00000128918 | 5,423 | ENSG00000128918 | 3,564 | 3,564 | ENSG00000128918 | distal | NA | NA | |
15 | 58,241,263 | G | A | false | distal | 639 | rs7177862 | 0.000302 | 0.25469 | 77.736 | intron_variant | dELS_flank | ENSG00000128918 | 37,910 | ENSG00000128918 | 636 | 636 | ENSG00000128918 | dELS_flank | ENSG00000128918 | 37,999 | ENSG00000128918 | 5,001 | 5,001 | ENSG00000128918 | distal | NA | NA | |
15 | 58,242,269 | A | G | false | distal | 639 | rs2414555 | 0.000298 | 0.25353 | 77.882 | intron_variant | dELS_flank | ENSG00000128918 | 36,904 | ENSG00000128918 | 273 | 273 | ENSG00000128918 | dELS_flank | ENSG00000128918 | 36,993 | ENSG00000128918 | 3,995 | 3,995 | ENSG00000128918 | distal | NA | NA | |
15 | 58,277,451 | G | A | false | distal | 642 | rs2414568 | 0.00006 | 0.19973 | 68.052 | intron_variant | pELS | ENSG00000128918 | 1,722 | ENSG00000128918 | 1,722 | 1,722 | ENSG00000128918 | pELS | ENSG00000128918 | 1,811 | ENSG00000128918 | 1,775 | 1,775 | ENSG00000128918 | distal | NA | NA | |
15 | 58,281,634 | T | G | true | distal | 635 | rs28690720 | 0.943605 | ApoA,HDLC | 0.13801 | 71.536 | intron_variant | dELS_flank | ENSG00000128918 | 2,370 | ENSG00000128918 | 2,312 | 2,312 | ENSG00000128918 | dELS_flank | ENSG00000128918 | 2,370 | ENSG00000128918 | 2,312 | 2,312 | ENSG00000128918 | distal | NA | NA |
15 | 58,431,740 | G | A | true | tss_proximal | 662 | rs2070895 | 0.956895 | ApoA,HDLC | 0.21904 | 33.602 | intron_variant | pELS | ENSG00000166035 | 250 | ENSG00000166035 | 250 | 250 | ENSG00000166035 | tss_proximal | ENSG00000166035 | 250 | ENSG00000166035 | 250 | 250 | ENSG00000166035 | tss_proximal | tss_prox:b1 | tss_prox:b1 |
15 | 58,478,324 | C | T | true | distal | 669 | rs7161799 | 0.988895 | Lym | 0.074713 | 21.354 | intron_variant | dELS | ENSG00000128918 | 4,410 | ENSG00000128918 | 4,563 | 4,410 | ENSG00000128918 | dELS | ENSG00000128918 | 4,410 | ENSG00000128918 | 19,541 | 4,410 | ENSG00000128918 | distal | NA | NA |
15 | 58,482,806 | G | A | false | distal | 653 | rs117574640 | 0.000038 | 0.010998 | 6.5167 | intron_variant | intron_variant | ENSG00000128918 | 8,892 | ENSG00000128918 | 9,045 | 8,892 | ENSG00000128918 | intron_variant | ENSG00000128918 | 8,892 | ENSG00000128918 | 15,059 | 8,892 | ENSG00000128918 | distal | NA | NA | |
15 | 58,548,387 | C | T | true | missense_variant | 619 | rs121912502 | 1 | ApoA,HDLC | 0.001458 | 5.7488 | missense_variant | missense_variant | ENSG00000166035 | 0 | ENSG00000166035 | 0 | 0 | ENSG00000166035 | missense_variant | ENSG00000128918 | 74,473 | ENSG00000166035 | 6,638 | 6,638 | ENSG00000166035 | missense_variant | NA | NA |
15 | 58,563,549 | C | T | true | missense_variant | 620 | rs113298164 | 1 | ApoA,HDLC | 0.001883 | 9.6001 | missense_variant | missense_variant | ENSG00000166035 | 0 | ENSG00000166035 | 0 | 0 | ENSG00000166035 | missense_variant | ENSG00000128918 | 89,635 | ENSG00000166035 | 21,800 | 21,800 | ENSG00000166035 | missense_variant | NA | NA |
15 | 58,563,557 | G | A | false | missense_variant | 620 | rs199654215 | 0.000059 | 0.000022 | 1.6863 | missense_variant | missense_variant | ENSG00000166035 | 0 | ENSG00000166035 | 0 | 0 | ENSG00000166035 | missense_variant | ENSG00000128918 | 89,643 | ENSG00000166035 | 21,808 | 21,808 | ENSG00000166035 | missense_variant | NA | NA | |
15 | 58,563,561 | A | C | false | missense_variant | 620 | rs142036980 | 0.000029 | 0.000034 | 47.596 | missense_variant | missense_variant | ENSG00000166035 | 0 | ENSG00000166035 | 0 | 0 | ENSG00000166035 | missense_variant | ENSG00000128918 | 89,647 | ENSG00000166035 | 21,812 | 21,812 | ENSG00000166035 | missense_variant | NA | NA | |
15 | 59,206,980 | G | A | false | missense_variant | 625 | rs3809530 | 0.000724 | 0.27309 | 151.89 | missense_variant | missense_variant | ENSG00000171989 | 0 | ENSG00000157483 | 218 | 0 | ENSG00000171989 | missense_variant | ENSG00000171989 | 136 | ENSG00000157483 | 218 | 136 | ENSG00000171989 | missense_variant | NA | NA | |
15 | 59,207,917 | T | C | false | missense_variant | 625 | rs3825937 | 0.000789 | 0.27382 | 151.29 | missense_variant | missense_variant | ENSG00000171989 | 0 | ENSG00000157483 | 763 | 0 | ENSG00000171989 | missense_variant | ENSG00000157483 | 863 | ENSG00000157483 | 1,082 | 863 | ENSG00000157483 | missense_variant | NA | NA | |
15 | 59,390,721 | T | C | false | distal | 651 | rs183345919 | 0.000041 | 0.006227 | 49.042 | intron_variant | intron_variant | ENSG00000157470 | 11,554 | ENSG00000259750 | 10,499 | 10,499 | ENSG00000259750 | intron_variant | ENSG00000157470 | 17,725 | ENSG00000259750 | 11,282 | 11,282 | ENSG00000259750 | distal | NA | NA | |
15 | 59,560,351 | C | A | false | distal | 684 | rs56176747 | 0.000101 | 0.27605 | 81.836 | intergenic_variant | intergenic_variant | ENSG00000157470 | 36,795 | ENSG00000240238 | 7,257 | 7,257 | ENSG00000240238 | intergenic_variant | ENSG00000140297 | 39,325 | ENSG00000240238 | 7,257 | 7,257 | ENSG00000240238 | distal | NA | NA | |
15 | 59,561,194 | A | G | false | distal | 684 | rs17236664 | 0.000107 | 0.27605 | 81.855 | intergenic_variant | intergenic_variant | ENSG00000157470 | 37,638 | ENSG00000240238 | 8,100 | 8,100 | ENSG00000240238 | intergenic_variant | ENSG00000140297 | 38,482 | ENSG00000240238 | 8,100 | 8,100 | ENSG00000240238 | distal | NA | NA | |
15 | 59,561,550 | T | G | false | distal | 684 | rs61179099 | 0.000103 | 0.27642 | 81.82 | intergenic_variant | intergenic_variant | ENSG00000157470 | 37,994 | ENSG00000240238 | 8,456 | 8,456 | ENSG00000240238 | intergenic_variant | ENSG00000140297 | 38,126 | ENSG00000240238 | 8,456 | 8,456 | ENSG00000240238 | distal | NA | NA | |
15 | 59,561,604 | G | C | false | distal | 684 | rs72751104 | 0.000104 | 0.27611 | 81.858 | intergenic_variant | intergenic_variant | ENSG00000157470 | 38,048 | ENSG00000240238 | 8,510 | 8,510 | ENSG00000240238 | intergenic_variant | ENSG00000140297 | 38,072 | ENSG00000240238 | 8,510 | 8,510 | ENSG00000240238 | distal | NA | NA | |
15 | 59,599,143 | G | A | false | tss_proximal | 662 | rs8030270 | 0.000088 | 0.21921 | 79.8 | intron_variant | dELS_flank | ENSG00000140297 | 533 | ENSG00000140297 | 499 | 499 | ENSG00000140297 | tss_proximal | ENSG00000140297 | 533 | ENSG00000140297 | 499 | 499 | ENSG00000140297 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 59,599,299 | T | C | false | tss_proximal | 662 | rs8035572 | 0.000079 | 0.21909 | 79.595 | intron_variant | dELS_flank | ENSG00000140297 | 377 | ENSG00000140297 | 343 | 343 | ENSG00000140297 | tss_proximal | ENSG00000140297 | 377 | ENSG00000140297 | 343 | 343 | ENSG00000140297 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 59,600,012 | T | C | false | tss_proximal | 662 | rs34475491 | 0.000077 | 0.21846 | 79.913 | intron_variant | dELS | ENSG00000140297 | 300 | ENSG00000140297 | 300 | 300 | ENSG00000140297 | tss_proximal | ENSG00000140297 | 334 | ENSG00000140297 | 358 | 334 | ENSG00000140297 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 59,600,214 | A | T | false | tss_proximal | 662 | rs12912229 | 0.000088 | 0.21941 | 79.536 | intron_variant | dELS_flank | ENSG00000140297 | 502 | ENSG00000140297 | 502 | 502 | ENSG00000140297 | tss_proximal | ENSG00000140297 | 536 | ENSG00000140297 | 560 | 536 | ENSG00000140297 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 59,657,491 | C | T | false | 5_prime_UTR_variant | 631 | rs189390820 | 0.00132 | 0.025782 | 17.752 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000140307 | 0 | ENSG00000140307 | 0 | 0 | ENSG00000140307 | 5_prime_UTR_variant | ENSG00000140307 | 11 | ENSG00000140307 | 5 | 5 | ENSG00000140307 | 5_prime_UTR_variant | NA | NA | |
15 | 60,398,589 | G | C | false | tss_proximal | 685 | rs4775266 | 0.000621 | 0.28488 | 83.588 | intron_variant | pELS | ENSG00000182718 | 55 | ENSG00000182718 | 511 | 55 | ENSG00000182718 | tss_proximal | ENSG00000182718 | 152 | ENSG00000182718 | 511 | 152 | ENSG00000182718 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
15 | 60,404,485 | G | C | false | non_coding_transcript_exon_variant | 689 | rs549508607 | 0.000038 | 0.004241 | 10.52 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000182718 | 1,601 | ENSG00000242667 | 0 | 0 | ENSG00000242667 | non_coding_transcript_exon_variant | ENSG00000182718 | 1,601 | ENSG00000242667 | 21 | 21 | ENSG00000242667 | non_coding_transcript_exon_variant | NA | NA | |
15 | 60,591,082 | C | A | true | distal | 643 | rs339969 | 0.99988 | GGT,TBil | 0.38542 | 83.516 | intron_variant | pELS | ENSG00000069667 | 1,304 | ENSG00000069667 | 1,304 | 1,304 | ENSG00000069667 | pELS | ENSG00000069667 | 1,458 | ENSG00000069667 | 1,434 | 1,434 | ENSG00000069667 | distal | NA | NA |
15 | 60,718,796 | G | C | true | distal | 670 | rs7173461 | 0.93218 | Balding_Type4 | 0.36514 | 20.163 | intron_variant | dELS | ENSG00000069667 | 40,109 | ENSG00000069667 | 12,443 | 12,443 | ENSG00000069667 | dELS | ENSG00000069667 | 91,332 | ENSG00000069667 | 12,443 | 12,443 | ENSG00000069667 | distal | NA | NA |
15 | 60,875,639 | C | G | false | distal | 671 | rs151012607 | 0.000069 | 0.001681 | 2.5369 | intron_variant | dELS | ENSG00000069667 | 196,952 | ENSG00000273792 | 26,570 | 26,570 | ENSG00000273792 | dELS | ENSG00000069667 | 248,175 | ENSG00000273792 | 26,570 | 26,570 | ENSG00000273792 | distal | NA | NA | |
15 | 60,875,984 | A | G | true | distal | 671 | rs77951645 | 1 | Balding_Type4 | 0.016151 | 6.1289 | intron_variant | dELS | ENSG00000069667 | 197,297 | ENSG00000273792 | 26,915 | 26,915 | ENSG00000273792 | dELS | ENSG00000069667 | 248,520 | ENSG00000273792 | 26,915 | 26,915 | ENSG00000273792 | distal | NA | NA |
15 | 61,176,268 | G | A | false | 3_prime_UTR_variant | 659 | rs1437543 | 0.000569 | 0.23517 | 56.152 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000069667 | 0 | ENSG00000259481 | 4,980 | 0 | ENSG00000069667 | 3_prime_UTR_variant | ENSG00000069667 | 52,886 | ENSG00000259481 | 4,980 | 4,980 | ENSG00000259481 | 3_prime_UTR_variant | NA | NA | |
15 | 61,224,742 | G | T | false | distal | 632 | rs72741603 | 0.000054 | 0.063575 | 14.011 | intron_variant | dELS_flank | ENSG00000069667 | 4,310 | ENSG00000069667 | 4,310 | 4,310 | ENSG00000069667 | dELS_flank | ENSG00000069667 | 4,412 | ENSG00000069667 | 4,390 | 4,390 | ENSG00000069667 | distal | NA | NA | |
15 | 61,841,914 | A | G | true | distal | 636 | rs146174823 | 0.992985 | IGF1 | 0.002375 | 6.1786 | intron_variant | dELS_flank | ENSG00000129003 | 10,474 | ENSG00000259564 | 7,136 | 7,136 | ENSG00000259564 | dELS_flank | ENSG00000129003 | 78,237 | ENSG00000259564 | 7,161 | 7,161 | ENSG00000259564 | distal | NA | NA |
15 | 61,899,728 | C | T | false | distal | 649 | rs4775449 | 0.000354 | 0.46576 | 314.56 | intron_variant | intron_variant | ENSG00000129003 | 7,535 | ENSG00000285863 | 5,563 | 5,563 | ENSG00000285863 | intron_variant | ENSG00000129003 | 20,423 | ENSG00000129003 | 17,803 | 17,803 | ENSG00000129003 | distal | NA | NA | |
15 | 61,900,915 | A | T | false | distal | 649 | rs142129652 | 0.00015 | 0.45875 | 247.06 | intron_variant | intron_variant | ENSG00000129003 | 6,348 | ENSG00000129003 | 5,727 | 5,727 | ENSG00000129003 | intron_variant | ENSG00000129003 | 19,236 | ENSG00000129003 | 16,616 | 16,616 | ENSG00000129003 | distal | NA | NA | |
15 | 61,984,953 | G | A | false | missense_variant | 619 | rs35942317 | 0.000057 | 0.000039 | 3.7085 | missense_variant | missense_variant | ENSG00000129003 | 0 | ENSG00000129003 | 0 | 0 | ENSG00000129003 | missense_variant | ENSG00000129003 | 64,800 | ENSG00000129003 | 6,794 | 6,794 | ENSG00000129003 | missense_variant | NA | NA | |
15 | 62,390,615 | C | T | false | 5_prime_UTR_variant | 630 | rs561339228 | 0.000495 | 0.003078 | 24.773 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000171914 | 0 | ENSG00000171914 | 0 | 0 | ENSG00000171914 | 5_prime_UTR_variant | ENSG00000171914 | 64 | ENSG00000171914 | 88 | 64 | ENSG00000171914 | 5_prime_UTR_variant | NA | NA | |
15 | 62,617,552 | A | T | false | distal | 634 | rs4316702 | 0.000468 | 0.34123 | 68.27 | intron_variant | dELS_flank | ENSG00000171914 | 798 | ENSG00000171914 | 798 | 798 | ENSG00000171914 | dELS_flank | ENSG00000171914 | 56,186 | ENSG00000259458 | 27,628 | 27,628 | ENSG00000259458 | distal | NA | NA | |
15 | 62,617,665 | A | G | false | distal | 634 | rs4321139 | 0.000444 | 0.34123 | 68.271 | intron_variant | dELS_flank | ENSG00000171914 | 685 | ENSG00000171914 | 685 | 685 | ENSG00000171914 | dELS_flank | ENSG00000171914 | 56,299 | ENSG00000259458 | 27,515 | 27,515 | ENSG00000259458 | distal | NA | NA | |
15 | 62,748,383 | C | G | false | missense_variant | 626 | rs117175127 | 0.002211 | 0.00131 | 6.5992 | missense_variant | missense_variant | ENSG00000171914 | 0 | ENSG00000171914 | 0 | 0 | ENSG00000171914 | missense_variant | ENSG00000171914 | 10,206 | ENSG00000171914 | 7,937 | 7,937 | ENSG00000171914 | missense_variant | NA | NA | |
15 | 62,762,956 | A | G | false | tss_proximal | 686 | rs77618835 | 0.000224 | 0.024973 | 9.9384 | intron_variant | CA-H3K4me3 | ENSG00000171914 | 502 | ENSG00000171914 | 269 | 269 | ENSG00000171914 | tss_proximal | ENSG00000171914 | 4,365 | ENSG00000171914 | 269 | 269 | ENSG00000171914 | tss_proximal | tss_prox:b2 | tss_prox:b1 | |
15 | 62,870,328 | T | C | false | distal | 670 | rs595866 | 0.000146 | 0.3777 | 113.75 | intron_variant | dELS | ENSG00000171914 | 25,696 | ENSG00000259370 | 13,629 | 13,629 | ENSG00000259370 | dELS | ENSG00000171914 | 111,737 | ENSG00000259370 | 13,705 | 13,705 | ENSG00000259370 | distal | NA | NA | |
15 | 63,049,797 | T | C | true | tss_proximal | 663 | rs11071720 | 1 | Plt | 0.2986 | 120.67 | intron_variant | pELS | ENSG00000140416 | 249 | ENSG00000259498 | 409 | 249 | ENSG00000140416 | tss_proximal | ENSG00000140416 | 970 | ENSG00000259498 | 409 | 409 | ENSG00000259498 | tss_proximal | tss_prox:b1 | tss_prox:b1 |
15 | 63,070,180 | G | T | false | 3_prime_UTR_variant | 656 | rs2414814 | 0.000196 | 0.03806 | 84.843 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000140416 | 0 | ENSG00000140416 | 0 | 0 | ENSG00000140416 | 3_prime_UTR_variant | ENSG00000140416 | 21,353 | ENSG00000259627 | 1,730 | 1,730 | ENSG00000259627 | 3_prime_UTR_variant | NA | NA | |
15 | 63,071,291 | T | C | true | 3_prime_UTR_variant | 656 | rs138843544 | 0.99992 | Plt | 0.034065 | 21.133 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000140416 | 0 | ENSG00000140416 | 0 | 0 | ENSG00000140416 | 3_prime_UTR_variant | ENSG00000140416 | 22,464 | ENSG00000259627 | 619 | 619 | ENSG00000259627 | 3_prime_UTR_variant | NA | NA |
15 | 63,190,868 | G | A | false | distal | 644 | rs2729794 | 0.008897 | 0.1496 | 139.54 | intron_variant | pELS | ENSG00000166128 | 1,119 | ENSG00000166128 | 1,119 | 1,119 | ENSG00000166128 | pELS | ENSG00000166128 | 1,261 | ENSG00000166128 | 1,264 | 1,261 | ENSG00000166128 | distal | NA | NA | |
15 | 63,323,472 | G | C | false | 3_prime_UTR_variant | 657 | rs34704344 | 0.000191 | 0.061138 | 124.02 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000074410 | 0 | ENSG00000074410 | 2,507 | 0 | ENSG00000074410 | 3_prime_UTR_variant | ENSG00000138613 | 45,853 | ENSG00000074410 | 8,340 | 8,340 | ENSG00000074410 | 3_prime_UTR_variant | NA | NA | |
15 | 63,323,568 | T | C | false | 3_prime_UTR_variant | 657 | rs77882042 | 0.001156 | 0.044275 | 50.258 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000074410 | 0 | ENSG00000074410 | 2,411 | 0 | ENSG00000074410 | 3_prime_UTR_variant | ENSG00000138613 | 45,949 | ENSG00000074410 | 8,244 | 8,244 | ENSG00000074410 | 3_prime_UTR_variant | NA | NA | |
15 | 63,324,362 | A | T | false | 3_prime_UTR_variant | 657 | rs61732378 | 0.000188 | 0.060965 | 123.77 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000074410 | 0 | ENSG00000074410 | 1,617 | 0 | ENSG00000074410 | 3_prime_UTR_variant | ENSG00000138613 | 46,743 | ENSG00000074410 | 7,450 | 7,450 | ENSG00000074410 | 3_prime_UTR_variant | NA | NA | |
15 | 63,383,242 | T | C | false | distal | 642 | rs9920237 | 0.000308 | 0.18808 | 51.881 | intergenic_variant | pELS | ENSG00000074410 | 1,395 | ENSG00000074410 | 4,168 | 1,395 | ENSG00000074410 | pELS | ENSG00000074410 | 1,395 | ENSG00000074410 | 4,168 | 1,395 | ENSG00000074410 | distal | NA | NA | |
15 | 63,423,271 | A | G | false | distal | 682 | rs77818635 | 0.000179 | 0.014873 | 69.844 | intron_variant | CA-CTCF_flank | ENSG00000074410 | 41,424 | ENSG00000259459 | 7,785 | 7,785 | ENSG00000259459 | CA-CTCF_flank | ENSG00000074410 | 41,424 | ENSG00000259459 | 33,040 | 33,040 | ENSG00000259459 | distal | NA | NA | |
15 | 63,424,102 | G | A | false | distal | 682 | rs290522 | 0.000077 | 0.015335 | 53.847 | intron_variant | CA-CTCF_flank | ENSG00000074410 | 42,255 | ENSG00000259459 | 6,954 | 6,954 | ENSG00000259459 | CA-CTCF_flank | ENSG00000074410 | 42,255 | ENSG00000259459 | 33,871 | 33,871 | ENSG00000259459 | distal | NA | NA | |
15 | 63,502,923 | G | A | false | non_coding_transcript_exon_variant | 690 | rs193279257 | 0.000067 | 0.000927 | 7.2185 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000140455 | 1,587 | ENSG00000276651 | 0 | 0 | ENSG00000276651 | non_coding_transcript_exon_variant | ENSG00000140455 | 1,587 | ENSG00000276651 | 159 | 159 | ENSG00000276651 | non_coding_transcript_exon_variant | NA | NA | |
15 | 63,527,228 | G | A | true | tss_proximal | 664 | rs55848327 | 0.938985 | ALT | 0.23038 | 245.55 | intron_variant | dELS_flank | ENSG00000140455 | 604 | ENSG00000140455 | 1,785 | 604 | ENSG00000140455 | tss_proximal | ENSG00000140455 | 604 | ENSG00000140455 | 9,876 | 604 | ENSG00000140455 | tss_proximal | tss_prox:b1 | tss_prox:b1 |
15 | 63,539,437 | G | C | false | distal | 635 | rs11071756 | 0.001231 | 0.13637 | 226.51 | intron_variant | dELS_flank | ENSG00000140455 | 2,280 | ENSG00000140455 | 2,280 | 2,280 | ENSG00000140455 | dELS_flank | ENSG00000140455 | 5,187 | ENSG00000140455 | 2,298 | 2,298 | ENSG00000140455 | distal | NA | NA | |
15 | 63,539,533 | T | C | false | distal | 635 | rs8038147 | 0.000791 | 0.13721 | 182.29 | intron_variant | dELS_flank | ENSG00000140455 | 2,376 | ENSG00000140455 | 2,376 | 2,376 | ENSG00000140455 | dELS_flank | ENSG00000140455 | 5,091 | ENSG00000140455 | 2,394 | 2,394 | ENSG00000140455 | distal | NA | NA | |
15 | 63,605,750 | A | C | false | distal | 676 | rs12907238 | 0.00263 | 0.44289 | 360.34 | intergenic_variant | dELS | ENSG00000103657 | 2,867 | ENSG00000259248 | 4,160 | 2,867 | ENSG00000103657 | dELS | ENSG00000197361 | 8,047 | ENSG00000259248 | 4,160 | 4,160 | ENSG00000259248 | distal | NA | NA | |
15 | 63,678,969 | C | A | false | tss_proximal | 661 | rs62014181 | 0.000034 | 0.040009 | 52.058 | intron_variant | dELS_flank | ENSG00000103657 | 603 | ENSG00000259589 | 649 | 603 | ENSG00000103657 | tss_proximal | ENSG00000103657 | 982 | ENSG00000259589 | 3,822 | 982 | ENSG00000103657 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 63,755,324 | A | G | false | missense_variant | 619 | rs370073027 | 0.000156 | 0.00005 | 19.368 | missense_variant | missense_variant | ENSG00000103657 | 0 | ENSG00000103657 | 0 | 0 | ENSG00000103657 | missense_variant | ENSG00000103657 | 77,337 | ENSG00000103657 | 5,874 | 5,874 | ENSG00000103657 | missense_variant | NA | NA | |
15 | 63,786,935 | A | T | false | distal | 638 | rs12916245 | 0.000627 | 0.36883 | 288.32 | intron_variant | dELS_flank | ENSG00000103657 | 6,382 | ENSG00000103657 | 11,285 | 6,382 | ENSG00000103657 | dELS_flank | ENSG00000103657 | 46,949 | ENSG00000103657 | 37,485 | 37,485 | ENSG00000103657 | distal | NA | NA | |
15 | 63,833,745 | G | A | false | tss_proximal | 685 | rs62023075 | 0.004675 | 0.30119 | 315.08 | intron_variant | PLS_flank | ENSG00000103657 | 76 | ENSG00000103657 | 81 | 76 | ENSG00000103657 | tss_proximal | ENSG00000103657 | 139 | ENSG00000103657 | 171 | 139 | ENSG00000103657 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
15 | 63,833,753 | G | A | false | tss_proximal | 685 | rs8028039 | 0.005235 | 0.30139 | 315.29 | intron_variant | PLS_flank | ENSG00000103657 | 68 | ENSG00000103657 | 73 | 68 | ENSG00000103657 | tss_proximal | ENSG00000103657 | 131 | ENSG00000103657 | 163 | 131 | ENSG00000103657 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
15 | 63,834,289 | G | A | false | tss_proximal | 663 | rs61385516 | 0.005325 | 0.29571 | 318.94 | upstream_gene_variant | pELS | ENSG00000103657 | 340 | ENSG00000103657 | 371 | 340 | ENSG00000103657 | tss_proximal | ENSG00000103657 | 340 | ENSG00000103657 | 371 | 340 | ENSG00000103657 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 63,864,643 | G | C | false | distal | 684 | rs11071769 | 0.000835 | 0.26614 | 176.45 | intergenic_variant | intergenic_variant | ENSG00000103657 | 30,694 | ENSG00000199156 | 6,286 | 6,286 | ENSG00000199156 | intergenic_variant | ENSG00000103657 | 30,694 | ENSG00000199156 | 6,375 | 6,375 | ENSG00000199156 | distal | NA | NA | |
15 | 63,864,816 | T | C | false | distal | 684 | rs1036910 | 0.00082 | 0.26615 | 176.46 | intergenic_variant | intergenic_variant | ENSG00000103657 | 30,867 | ENSG00000199156 | 6,113 | 6,113 | ENSG00000199156 | intergenic_variant | ENSG00000103657 | 30,867 | ENSG00000199156 | 6,202 | 6,202 | ENSG00000199156 | distal | NA | NA | |
15 | 63,865,035 | G | A | false | distal | 684 | rs1964441 | 0.000845 | 0.26617 | 176.43 | intergenic_variant | intergenic_variant | ENSG00000103657 | 31,086 | ENSG00000199156 | 5,894 | 5,894 | ENSG00000199156 | intergenic_variant | ENSG00000103657 | 31,086 | ENSG00000199156 | 5,983 | 5,983 | ENSG00000199156 | distal | NA | NA | |
15 | 64,037,738 | T | C | false | distal | 635 | rs394679 | 0.000156 | 0.139 | 122.61 | intron_variant | dELS_flank | ENSG00000035664 | 2,431 | ENSG00000035664 | 2,431 | 2,431 | ENSG00000035664 | dELS_flank | ENSG00000035664 | 2,528 | ENSG00000035664 | 2,528 | 2,528 | ENSG00000035664 | distal | NA | NA | |
15 | 64,039,113 | T | C | false | distal | 643 | rs895886 | 0.000082 | 0.37693 | 136.67 | intron_variant | pELS | ENSG00000035664 | 1,056 | ENSG00000035664 | 1,056 | 1,056 | ENSG00000035664 | pELS | ENSG00000035664 | 1,153 | ENSG00000035664 | 1,153 | 1,153 | ENSG00000035664 | distal | NA | NA | |
15 | 64,190,988 | A | G | false | distal | 650 | rs10519228 | 0.002539 | 0.11418 | 533.17 | intron_variant | intron_variant | ENSG00000169118 | 2,502 | ENSG00000169118 | 1,507 | 1,507 | ENSG00000169118 | intron_variant | ENSG00000169118 | 12,190 | ENSG00000166794 | 27,853 | 12,190 | ENSG00000169118 | distal | NA | NA | |
15 | 64,378,645 | G | A | false | distal | 679 | rs11071793 | 0.007682 | 0.12068 | 543.81 | intron_variant | dELS | ENSG00000166803 | 1,739 | ENSG00000259316 | 1,739 | 1,739 | ENSG00000166803 | dELS | ENSG00000166803 | 2,792 | ENSG00000166803 | 2,509 | 2,509 | ENSG00000166803 | distal | NA | NA | |
15 | 64,419,787 | A | G | false | distal | 650 | rs12903003 | 0.006078 | 0.11198 | 597.66 | intron_variant | intron_variant | ENSG00000103671 | 1,058 | ENSG00000103671 | 1,058 | 1,058 | ENSG00000103671 | intron_variant | ENSG00000103671 | 4,327 | ENSG00000103671 | 24,871 | 4,327 | ENSG00000103671 | distal | NA | NA | |
15 | 64,465,718 | T | C | false | distal | 632 | rs72741336 | 0.007309 | 0.062681 | 605.16 | intron_variant | dELS_flank | ENSG00000180357 | 4,879 | ENSG00000259682 | 4,534 | 4,534 | ENSG00000259682 | dELS_flank | ENSG00000180357 | 4,975 | ENSG00000259682 | 4,534 | 4,534 | ENSG00000259682 | distal | NA | NA | |
15 | 64,758,292 | C | G | false | distal | 632 | rs72744740 | 0.001386 | 0.06301 | 589.02 | intron_variant | dELS_flank | ENSG00000166831 | 2,838 | ENSG00000221033 | 4,094 | 2,838 | ENSG00000166831 | dELS_flank | ENSG00000166831 | 2,924 | ENSG00000221033 | 4,222 | 2,924 | ENSG00000166831 | distal | NA | NA | |
15 | 64,758,315 | T | C | false | distal | 632 | rs72744741 | 0.001598 | 0.06309 | 589 | intron_variant | dELS_flank | ENSG00000166831 | 2,815 | ENSG00000221033 | 4,071 | 2,815 | ENSG00000166831 | dELS_flank | ENSG00000166831 | 2,901 | ENSG00000221033 | 4,199 | 2,901 | ENSG00000166831 | distal | NA | NA | |
15 | 64,816,305 | A | T | false | missense_variant | 622 | rs17802279 | 0.000095 | 0.45796 | 105.56 | missense_variant | missense_variant | ENSG00000140451 | 0 | ENSG00000140451 | 346 | 0 | ENSG00000140451 | missense_variant | ENSG00000140451 | 9,341 | ENSG00000140451 | 2,518 | 2,518 | ENSG00000140451 | missense_variant | NA | NA | |
15 | 64,922,011 | G | C | false | missense_variant | 623 | rs76626463 | 0.000225 | 0.000023 | 23.151 | missense_variant | missense_variant | ENSG00000249240 | 0 | ENSG00000166839 | 0 | 0 | ENSG00000249240 | missense_variant | ENSG00000166839 | 83 | ENSG00000166839 | 10,082 | 83 | ENSG00000166839 | missense_variant | NA | NA | |
15 | 64,989,286 | A | G | false | splicing | 692 | rs11633597 | 0.000279 | 0.4381 | 172.07 | splice_polypyrimidine_tract_variant | splice_polypyrimidine_tract_variant | ENSG00000090487 | 12 | ENSG00000090487 | 12 | 12 | ENSG00000090487 | splice_polypyrimidine_tract_variant | ENSG00000090487 | 187 | ENSG00000090487 | 239 | 187 | ENSG00000090487 | splicing | NA | splicing:b1 | |
15 | 65,034,495 | T | A | false | distal | 675 | rs12906662 | 0.000046 | 0.47071 | 119.05 | intergenic_variant | dELS | ENSG00000103707 | 4,855 | ENSG00000103707 | 4,855 | 4,855 | ENSG00000103707 | dELS | ENSG00000103707 | 4,855 | ENSG00000103707 | 4,855 | 4,855 | ENSG00000103707 | distal | NA | NA | |
15 | 65,058,630 | T | A | false | splicing | 692 | rs2232758 | 0.000073 | 0.47144 | 118.37 | splice_polypyrimidine_tract_variant | splice_polypyrimidine_tract_variant | ENSG00000103710 | 12 | ENSG00000277351 | 8,827 | 12 | ENSG00000103710 | splice_polypyrimidine_tract_variant | ENSG00000103710 | 9,312 | ENSG00000277351 | 8,827 | 8,827 | ENSG00000277351 | splicing | NA | splicing:b1 | |
15 | 65,076,540 | G | A | false | missense_variant | 618 | rs149689165 | 0.000053 | 0.000391 | 10.389 | missense_variant | missense_variant | ENSG00000103710 | 0 | ENSG00000278737 | 6,501 | 0 | ENSG00000103710 | missense_variant | ENSG00000103710 | 149 | ENSG00000278737 | 7,122 | 149 | ENSG00000103710 | missense_variant | NA | NA | |
15 | 65,076,904 | G | A | false | missense_variant | 618 | rs138484272 | 0.000042 | 0.003496 | 105.18 | missense_variant | missense_variant | ENSG00000234438 | 0 | ENSG00000278737 | 6,137 | 0 | ENSG00000234438 | missense_variant | ENSG00000234438 | 157 | ENSG00000278737 | 6,758 | 157 | ENSG00000234438 | missense_variant | NA | NA | |
15 | 65,076,913 | G | A | false | missense_variant | 618 | rs200548009 | 0.000053 | 0.000322 | 2.4903 | missense_variant | missense_variant | ENSG00000234438 | 0 | ENSG00000278737 | 6,128 | 0 | ENSG00000234438 | missense_variant | ENSG00000234438 | 166 | ENSG00000278737 | 6,749 | 166 | ENSG00000234438 | missense_variant | NA | NA | |
15 | 65,076,930 | G | C | false | missense_variant | 618 | rs201420126 | 0.000124 | 0.000066 | 41.004 | missense_variant | missense_variant | ENSG00000234438 | 0 | ENSG00000278737 | 6,111 | 0 | ENSG00000234438 | missense_variant | ENSG00000234438 | 183 | ENSG00000278737 | 6,732 | 183 | ENSG00000234438 | missense_variant | NA | NA | |
15 | 65,396,929 | T | C | false | missense_variant | 617 | rs12442757 | 0.000662 | 0.17289 | 51.193 | missense_variant | missense_variant | ENSG00000103742 | 0 | ENSG00000103742 | 499 | 0 | ENSG00000103742 | missense_variant | ENSG00000174498 | 18,926 | ENSG00000103742 | 499 | 499 | ENSG00000103742 | missense_variant | NA | NA | |
15 | 65,412,778 | A | T | true | distal | 672 | rs1550026 | 0.941425 | HbA1c | 0.40769 | 246.04 | intron_variant | dELS | ENSG00000103742 | 1,407 | ENSG00000103742 | 1,692 | 1,407 | ENSG00000103742 | dELS | ENSG00000103742 | 10,168 | ENSG00000103742 | 1,692 | 1,692 | ENSG00000103742 | distal | NA | NA |
15 | 65,521,314 | G | A | false | distal | 632 | rs375004 | 0.000119 | 0.06174 | 383.72 | intergenic_variant | dELS_flank | ENSG00000074603 | 3,609 | ENSG00000074603 | 3,685 | 3,609 | ENSG00000074603 | dELS_flank | ENSG00000074603 | 3,609 | ENSG00000074603 | 3,685 | 3,609 | ENSG00000074603 | distal | NA | NA | |
15 | 65,521,351 | A | T | false | distal | 632 | rs399741 | 0.000124 | 0.06192 | 384.4 | intergenic_variant | dELS_flank | ENSG00000074603 | 3,646 | ENSG00000074603 | 3,722 | 3,646 | ENSG00000074603 | dELS_flank | ENSG00000074603 | 3,646 | ENSG00000074603 | 3,722 | 3,646 | ENSG00000074603 | distal | NA | NA | |
15 | 65,625,017 | T | G | false | missense_variant | 621 | rs35571449 | 0.0001 | 0.062978 | 370.32 | missense_variant | missense_variant | ENSG00000074621 | 0 | ENSG00000074621 | 0 | 0 | ENSG00000074621 | missense_variant | ENSG00000074621 | 935 | ENSG00000074621 | 13,204 | 935 | ENSG00000074621 | missense_variant | NA | NA | |
15 | 66,211,246 | G | A | true | distal | 681 | rs113182412 | 0.96756 | BMI | 0.16673 | 57.223 | intron_variant | CA-CTCF_flank | ENSG00000157890 | 42,358 | ENSG00000261318 | 67,251 | 42,358 | ENSG00000157890 | CA-CTCF_flank | ENSG00000157890 | 42,490 | ENSG00000166938 | 82,060 | 42,490 | ENSG00000157890 | distal | NA | NA |
15 | 66,491,272 | G | A | false | 3_prime_UTR_variant | 655 | rs8684 | 0.001705 | 0.072966 | 313.48 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000169032 | 0 | ENSG00000169032 | 0 | 0 | ENSG00000169032 | 3_prime_UTR_variant | ENSG00000174446 | 6,465 | ENSG00000261351 | 836 | 836 | ENSG00000261351 | 3_prime_UTR_variant | NA | NA | |
15 | 66,499,010 | G | A | false | 3_prime_UTR_variant | 655 | rs62011880 | 0.001846 | 0.072659 | 313.9 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000174444 | 0 | ENSG00000174444 | 309 | 0 | ENSG00000174444 | 3_prime_UTR_variant | ENSG00000174446 | 1,247 | ENSG00000174444 | 807 | 807 | ENSG00000174444 | 3_prime_UTR_variant | NA | NA | |
15 | 66,596,066 | A | G | false | distal | 680 | rs2439358 | 0.000341 | 0.16095 | 102.57 | intron_variant | dELS | ENSG00000188501 | 30,067 | ENSG00000259471 | 13,817 | 13,817 | ENSG00000259471 | dELS | ENSG00000188501 | 30,067 | ENSG00000259471 | 13,875 | 13,875 | ENSG00000259471 | distal | NA | NA | |
15 | 66,648,419 | C | A | false | distal | 637 | rs11638599 | 0.000439 | 0.21176 | 52.162 | intron_variant | dELS_flank | ENSG00000137834 | 53,816 | ENSG00000259471 | 15,942 | 15,942 | ENSG00000259471 | dELS_flank | ENSG00000137834 | 53,816 | ENSG00000137834 | 54,657 | 53,816 | ENSG00000137834 | distal | NA | NA |
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