id stringlengths 12 30 | sequence stringlengths 12 4.38k | secondary_structure stringlengths 12 4.38k | aligned_ids listlengths 1 10 | aligned_sequences listlengths 1 10 | split stringclasses 4
values |
|---|---|---|---|---|---|
URS0001A23C58_12908_1-71 | AUAGGCAUUAAACGCCUAUUAAUCUGCAUGUUAAUAGUCUGCUCUUUGGCCGGACAGACGGUUAGUGAGUG | ((((((.......))))))...........(((((.(((((.(((......)))))))).)))))...... | [
"URS0001A23C58_12908/1-71",
"URS0001A245A3_12908/1-70"
] | [
"AUAGGC-----AUUAAAC-----------GCCUAU-----UAAUCUGCAUGUUAAUAGUC--UG--CUCU----------UUGGCC-GGA-C-AGACGGUUAGUG-AGUG",
"UAGGC------AAUAAAA------------GCCUA----UUAAUCUGCAUGUUAAUAGUC--UG--CUCU----------UUGGCC-GGA-C-AGACGGUUAGUG-AGUG"
] | rfam_14_5_ref |
URS0001A23C5C_12908_1-34 | CUCUGAUCCAGCAAAUGCAUCAGGGCACAAGGAG | (((((.....((....))..)))))......... | [
"URS0001A23C5C_12908/1-34",
"URS0001A23C5C_1449335/1-34",
"URS0001A23B4C_1449343/1-34",
"URS0001A23C13_1266845/1-34",
"URS0001A24A19_333990/1-34",
"URS0001A246FB_1122143/1-34"
] | [
"CUCUGAUCCA--GC-----------AAAU--------------------GC-----AUCAGGG-C--ACAAGGAG",
"CUCUGAUCCA--GC-----------AAAU--------------------GC-----AUCAGGG-C--ACAAGGAG",
"CUCUGGUUCA--GC-----------AAAU--------------------GC-----AUCAGGG-C--ACAAGGAG",
"CUCUGAUUCA--GC-----------AGAU--------------------GC-----AUCAGGG-C--ACAAG... | rfam_14_5_ref |
URS0001A23C62_12908_1-34 | GAUUAUCGAAGGAGUUUCGCCUUAAUUCAUAAUC | ((((((.(((((.......))))....))))))) | [
"URS0001A23C62_12908/1-34",
"URS0001A23EF3_12908/1-33",
"URS0001A248AE_12908/1-33",
"URS0001A242FD_12908/1-33",
"URS0001A2429C_12908/1-33",
"URS0001A23D66_12908/1-33",
"URS0001A24A2C_12908/1-29"
] | [
"G-AU-U-AUCGAAGGAGUUUCG---------CCUUAAU-UC-A-UAAU--C",
"G-GU-U-GUCGGAGGAGUUCG----------CCUUAAU-UC-A-CAAU--C",
"G-AU-U-GUCGAAGGAGAACG----------CCUUAAU-UC-A-CAAU--C",
"G-AG-U-AUCGGAGGAGGAAG----------CCUUAAU-UC-A-UAUU--C",
"G-AU-U-AUCGAAGGAGUUCG----------CCUUAAU-UC-A-UAAU--C",
"G-AU-U-AUCGAAGGAUUAG----------... | rfam_14_5_ref |
URS0001A23C70_230356_1-74 | CUGAUAAAUGCGCUUUUGAGGGUGGACGAAAUUUUCGGCCCUUUAUCCGACGGGAUAGCGCACAAAUAGGUCAG | (((((...(((((......((((...((((...))))))))..(((((....)))))))))).......))))) | [
"URS0001A23C70_230356/1-74",
"URS0001A232C0_679926/1-73",
"URS0001A2349C_12908/1-71"
] | [
"CUGAU-AAAUGCGCUUUUGAGGGUGGAC---GAA-----AUU-----------UUC-G-GCCCUU----UAUCC-------------------------GACG----------------------------------------G-GAUA------GCGCACAAAUAG---GUCAG",
"CUGAU-AAAUGCGCCUCAA-GGGUGGAC---GAA-----AUU-----------UUC-G-GCCCUU----UAUCC-------------------------GACG-------------------------------... | rfam_14_5_ref |
URS0001A23C87_379347_1-102 | GGUCACCUGAACCCGGCGUGGAUGCGCCAAGGCAGGGGGCUUUAACAUAGCGGUGCCAAAGACAAGAACCUAAGGCACUGCACGCUAAACGGAAGACAGAAA | ((((.(((..........................)))))))........((((((((................))))))))..................... | [
"URS0001A23C87_379347/1-102",
"URS0001A23B10_1121479/1-79",
"URS0001A23615_292414/1-102"
] | [
"GGUC-ACCU--GAACCCGGCGUGGAUGCGCCAAGGCA---------GGG----GGC-UUUAACAUA------GCGGU-----------GCC-------------------------AAAGACAAGAACCUAA--------------------------------------------------------------GGC-----------------------A-CUGCA-------CGCUAAACGGA-AGACAGA-AA",
"GGCC-ACCU--UCG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23C89_12908_1-72 | GCAGGCAGAAAACCUGCAAAGCGCGUGUUAAUAGUAACGCCAAUUUUGGCCGGGCGUUAUGGUUAGUGAAUC | (((((.......)))))..........(((((.((((((((...........)))))))).)))))...... | [
"URS0001A23C89_12908/1-72",
"URS0001A231CB_12908/1-72"
] | [
"GCAGGC-----AGAAA-------------ACCUGC------AAAGCGCGUGUUAAUAGUA--AC--GCC-------AAUUUUGGCC-GGGCG-UUAUGGUUAGUG-AAUC",
"GCAGGC-----AGAAA-------------GCCUGC------AAAGCGCGUGUUAAUAGUA--AC--GCC-------AAUUUUGGCC-GGGCG-UUAUGGUUAGUG-AAUC"
] | rfam_14_5_ref |
URS0001A23C8E_12908_1-51 | CGCAUGGUGUUCGGCUUUGGAUCGAAUGGCGAUGCGGCCCAUAACUGAGGU | (((((.((..((((.(...).))))...)).)))))............... | [
"URS0001A23C8E_12908/1-51",
"URS0001A2321E_1120963/1-51",
"URS0001A23B71_1122124/1-49",
"URS0001A23AB9_435908/1-49",
"URS0001A23729_12908/1-49"
] | [
"CGCAUGGUGUUCGGCU-------------------UUG--------------------------------G-AUCGA-AUGGCGAUGCGGCCCAUAACU----GAGGU",
"CGUAUGGUGUUCGG-C-------------------UUAG-------------------------------G-AUCGA-AUAGCGAUACGGCCUGAAAAA----GAGGU",
"CGUAUGGUGUCCGG-C-------------------ACAG-------------------------------G-AUCGG-AUGGCGAUG... | rfam_14_5_ref |
URS0001A23C92_12908_1-72 | CUGAUUGAACGCGCCGGGCGAACGUGAAAACGAGCCCACUUUCUGCAUAGCCGGAAAGCGCGUCCGGGUCAG | (((((....(((((.((((...(((....))).))))..(((((((...)).)))))))))).....))))) | [
"URS0001A23C92_12908/1-72",
"URS0001A24879_12908/1-72",
"URS0001A231C8_12908/1-72"
] | [
"CUGAUUGAACGCGC-C----GGGCGAAC---GU------GAAA-----------AC-GAGCCCAC----UUUCU------GC-----------------AUA---------------------------GC-----------CG-GAAA------GCGCGUCCGG-----GUCAG",
"CUGAUUGAACGCGC-C----GGGCGAAC---GU------GAAA-----------AC-GAGCCCAC----UUUCU------G------------------AAUACA-------------------------C---... | rfam_14_5_ref |
URS0001A23C9A_12908_1-37 | GCGCUGAUCGGUAACCAGCGCCUGACUAAAUAAGGAG | ((((((.(.....).))))))................ | [
"URS0001A23C9A_12908/1-37",
"URS0001A2482D_12908/1-36",
"URS0001A2420D_12908/1-36"
] | [
"GC-GCUGAUCGGUAACC-AGCGC-CUGACUAAAUAAGGAG",
"GC-GCUGAUCGGUAACC-AGCGC--CUGACCAAUAAGGAG",
"GC-GCUGAUCGGUAACC-AGCGC--CUGACUAAUAAGGAG"
] | rfam_14_5_ref |
URS0001A23CAF_12908_1-76 | GGGCACCUACGGGGGCCUACAACCACAUAGGCGGGGCCAAAGAGGCCUGCGUCGUUUGCUAAACGGAAGACAGACA | ((((.(((...)))))))...........((((((((.......)))).))))....................... | [
"URS0001A23CAF_12908/1-76",
"URS0001A23594_375451/1-68",
"URS0001A249D0_12908/1-65",
"URS0001A24394_1305735/1-64",
"URS0001A247E7_12908/1-68"
] | [
"GGGC-ACCU--ACG--------------------------------GGG----GCC-UACAACCACAUA---GGCGG-----------GGCC------------------------AAAGA------------------------------------------------------------------------GGCC-----------------------UGCGUCG--UU---UGCUAAACGGA-AGACAGA-CA",
"GGGC-ACCU--ACG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23CC6_12908_1-67 | UACUUUUGCACUCUCGCAACGAAAAUCGUAGCGAAUACAUAAAAAUUAUUUUAAUAAUAUUGGCAUG | .............((((.(.........).))))................................. | [
"URS0001A23CC6_12908/1-67",
"URS0001A23B02_313595/1-65",
"URS0001A244D1_12908/1-65",
"URS0001A24882_12908/1-63",
"URS0001A23FA0_12908/1-66"
] | [
"UACUU-UUGCACUC-------------UCGCAACGA---------AAA-----------------UCGUAGCGA-------------------------------------AUAC-AUAAA-AAUUAUU---UU-AA--UAAUAUUGGCAUG",
"UACUU-UUGCACGAU------------UGAAUAGA----------AAA------------------UCUAUUUU--------------------------------------AGC-AUAAA-AAUUAUU---GA-AA--UAAUAUUGGCAUG",
... | rfam_14_5_ref |
URS0001A23CE0_1286632_1-69 | UAUAUUUGCGGCCUGUAACAGAAGGUCUGUUAUGGGGUACAUAAAAAUCAUUUAAAUAAUAUUGGAAUG | .............((((((.........))))))................................... | [
"URS0001A23CE0_1286632/1-69",
"URS0001A23B3C_12908/1-64",
"URS0001A2421E_1123234/1-64",
"URS0001A244FC_12908/1-65",
"URS0001A242B8_12908/1-66",
"URS0001A239D3_620914/1-65",
"URS0001A23871_12908/1-68"
] | [
"UAUAU-UUGCGGCC-------------UGUAACAGA---------AGG-----------------UCUGUUAUG-----------------------------------GGGUAC-AUAAA-AAUCAUU---UA-AA--UAAUAUUGGAAUG",
"UAUCU-UUGCGCCC-------------UCAUUGA-----------ACG-------------------UCAAUGA------------------------------------GAUAC-AUAAA-AAUCAUU---AA-UA--CAAUAUUGGAAUG",
... | rfam_14_5_ref |
URS0001A23CE7_12908_1-76 | UGGGGCACGCUUAGAGCCCCAAGACAUGGUUGUGUUAAUAGCGUCGCCUUUGGCCGGACGGCGCGGUUAGUGAAUC | ((((((.........)))))).............(((((.((((((.((......)).)))))).)))))...... | [
"URS0001A23CE7_12908/1-76",
"URS0001A23515_12908/1-75",
"URS0001A23B68_12908/1-76"
] | [
"UGGGGCAC---GCUUA-----------GAGCCCCA---AGACAUGGUUGUGUUAAUAGCG--UC--GCCU----------UUGGCC-GGACG-GCGCGGUUAGUG-AAUC",
"UGGGG------AACACUUAGAA--------CCCCA----CGUACAGAAGUGUUAAUAGCG--GU--GCUU----------UUGGCC-GAACA-UCGUGGUUAGUG-AAUC",
"UGGGGCAC---GCUUA-----------GAGCCCCA---AGGCAUGGUUGUGUUAAUAGCG--UC--GCCU----------UUG... | rfam_14_5_ref |
URS0001A23CFE_12908_1-66 | GCGGUACCGGUUCACGUCACGACGGCCAGCCCCGACCGGGGCCCGGCUAGCGGCGACCCGGCGACC | ..(((.((((....((((.(.(.........................).).))))..))))..))) | [
"URS0001A23CFE_12908/1-66",
"URS0001A249F0_12908/1-50",
"URS0001A2494A_12908/1-50",
"URS0001A23D87_12908/1-55",
"URS0001A235D9_12908/1-55",
"URS0001A237F2_12908/1-42",
"URS0001A2367F_12908/1-52",
"URS0001A23230_12908/1-64",
"URS0001A23A73_12908/1-40",
"URS0001A23415_12908/1-43"
] | [
"GCGG-UACCGGUUCACGUCACGACGGCCAGCCCC--------------GACC----------------------------------------------------------GGGGC-CCGGCUAGCGGCGACCCGGCG-ACC",
"CUGG-UUCCGGUUCACGUC-CCGCC-----------------------GUCCGA-----------------------------------------------------------------GGCGGCGACGACCCGGCG-ACC",
"CCGG-UUCCGGUUCACGUCC-... | rfam_14_5_ref |
URS0001A23D06_12908_1-58 | CCCGAGUACUCGGGACGACAUGUGGGAAGACGUCAAUGACGUCUUCCCGAAUCGCAAG | (((((....)))))..((.....(((((...............)))))...))..... | [
"URS0001A23D06_12908/1-58",
"URS0001A23399_12908/1-56",
"URS0001A23399_768065/1-56",
"URS0001A24682_12908/1-56",
"URS0001A23473_12908/1-56",
"URS0001A236A5_12908/1-50"
] | [
"CCCGA------------------------------GUAC------------------------------------UCGG-G------ACGACAUGU-GGGAAGACGUC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAU------------------... | rfam_14_5_ref |
URS0001A23D0C_12908_1-72 | ACGGGAACAGCACAGCUACAGAUCCGACGCGCCGGGGCCUCUUUCGCCCACGGCUUGGGAAUGUAGCAGUGC | .........((((.((((((...((.....((((((...........)).))))...))..)))))).)))) | [
"URS0001A23D0C_12908/1-72",
"URS0001A23804_12908/1-71",
"URS0001A240CF_2248/1-71",
"URS0001A240CF_12908/1-71",
"URS0001A240CF_413816/1-71",
"URS0001A240CF_1230456/1-71",
"URS0001A24A3A_12908/1-71",
"URS0001A2451D_12908/1-71",
"URS0001A241DE_12908/1-71",
"URS0001A245F6_12908/1-71"
] | [
"ACGGGAACAGCACAGCUACAGAUCCGACGC-GCCG-GGGC--------------------------------CUCUUUC-------------------------------------------------GCCCACGGC-U-U-GGGAAUGUAGCAGUGC",
"ACGGGAACAGCACAGCUGCAGAUCCGACGC-GCCG-GGGCG-------------------------------CUCU---------------------------------------------------CGCCCACGGC-U-U-GGGAAUGUA... | rfam_14_5_ref |
URS0001A23D1E_12908_1-75 | GGGGGAGUACUUAGGCCCCCCAGGAGCGACGUGUUAAUAGCUGUGCUUUUGGCCAGGCAUAGUGGUUAGUGAAUC | (((((...........)))))............(((((.(((((((((......))))))))).)))))...... | [
"URS0001A23D1E_12908/1-75",
"URS0001A24333_12908/1-75",
"URS0001A23A8D_12908/1-74"
] | [
"GGGGGAGU---ACUUAG----------GC-CCCCC----AGGAGCGACGUGUUAAUAGCU--GU--GCUU----------UUGGCC-AGGCA-UAGUGGUUAGUG-AAUC",
"GAGGGAGU---ACUUA-----------GGUCCCUC----AGAAGCGGUGUGUUAAUAGUG--AU--GCUU----------UUGGCC-AGGCA-UGACGGUUAGUG-AAUC",
"GGGG-------AUACACUUAGAA--------CCCC----AGGAAAGGCGUGUUAAUAGCG--GU--GCUU----------UUG... | rfam_14_5_ref |
URS0001A23D2C_12908_1-34 | CUAUGGUUUGAAAAAACAACCAUGGCAAAAGGAG | ((((((((.........))))))))......... | [
"URS0001A23D2C_12908/1-34",
"URS0001A233A1_12908/1-31",
"URS0001A23A0E_1423751/1-33",
"URS0001A23AB7_97137/1-33",
"URS0001A23926_1423754/1-33"
] | [
"CUAUG-------GUU----------UGAAAAAAC--------------AAC-------CAUGG-C--AAAAGGAG",
"CUAUG-------GU-----------AGACUACA----------------AC-------CAUGG-C--GGAAGGAG",
"CUAUG-------GUC----------UGAAAGAU---------------GAC-------UAUGG-C--AAAAGGAG",
"CUAUG-------GUC----------UGUAAAAU---------------GAU-------CAUGG-C--AAAAG... | rfam_14_5_ref |
URS0001A23D31_12908_1-39 | GAUUAUAAAAGACCCUUAUCCUCUCUAUAAUCGCGGCUG | (((((((..................)))))))....... | [
"URS0001A23D31_12908/1-39",
"URS0001A23639_12908/1-35",
"URS0001A23645_12908/1-39",
"URS0001A23345_12908/1-39",
"URS0001A240D0_12908/1-39",
"URS0001A23D48_12908/1-39",
"URS0001A232F2_12908/1-34",
"URS0001A23ED2_12908/1-34",
"URS0001A23C77_12908/1-33",
"URS0001A235BB_12908/1-33"
] | [
"GAUUAUA--------------------------AAAGACCCUUAUCCUCUC---UAUAAUCGCGG-CU-G",
"GACUAUA------------------------------AUUUAUCACCUCUC---UAUAGUCGCGG-CU-G",
"GAUUAC-------------------------UCAAAGACCUUAUCCUCUCU----GUAGUCGCGG-CU-G",
"GAUUACA--------------------------CAAAGACCUUAUCCUCUC---UGUAGUCCCGG-CU-G",
"GAUUACA----... | rfam_14_5_ref |
URS0001A23D33_12908_1-42 | CAGGCCCCGGUUCACGUCAUCGCCGAUGACGACCCGGCGACC | ..((..((((....(((((((...)))))))..))))...)) | [
"URS0001A23D33_12908/1-42",
"URS0001A23DD9_12908/1-38",
"URS0001A2400F_12908/1-38"
] | [
"CAGG-CCCCGGUUCACGUCAUC--------------------------GCC-----------------------------------------------------------------------GAUGACGACCCGGCG-ACC",
"CGAG-CACCGGUUCACGUC-----------------------------CCUAC------------------------------------------------------------------------GACGACCCGGCG-GCU",
"AAGG-UUCCGGUUCACGUC--... | rfam_14_5_ref |
URS0001A23D36_2002_1-56 | CGGGGAUCGUGCGCGACUCCCCGGCCCGACCCCGGUACCUCGUACGGCCGGGGCGG | ((((((((......)).))))))..(((.(((((((..........)))))))))) | [
"URS0001A23D36_2002/1-56",
"URS0001A24542_2001/1-54",
"URS0001A2464F_479432/1-55",
"URS0001A24553_28444/1-47"
] | [
"CGGGGA-UCG------UGCG-------------------------CGACUCCCCGGC-----CCGA-CCCCGGUACCUCGUACGGCCGGGG--CGG",
"CGGGGA-UC-------GAGC--------------------------GAUUCCCCGGC-----CUGA-CCCCGGUACCUGAUACGGCCGGGG--CGG",
"ACGGGGA-UC------GAGC-------------------------GACUCCCCGGC------CUGA-CCCCGGUACCUGAUACGGCCGGGG--CGG",
"CGAUC----... | rfam_14_5_ref |
URS0001A23D3A_1206730_1-53 | UCGGUCCCGGUUCACGUCCCGAUCACGAAAACGAUCUGGGCGACCCGGCGGCC | ..(((.((((....(((((.((............)).)))))..))))..))) | [
"URS0001A23D3A_1206730/1-53",
"URS0001A237B2_12908/1-45",
"URS0001A231CC_12908/1-44",
"URS0001A2394E_12908/1-46",
"URS0001A23DE0_644548/1-46",
"URS0001A24101_1209984/1-50",
"URS0001A23E4B_1157943/1-38",
"URS0001A2363B_1214102/1-44",
"URS0001A2363B_547163/1-44",
"URS0001A2363B_1796/1-44"
] | [
"UCGG-UCCCGGUUCACGUCCCGAUC-----------------------ACGAAAAC---------------------------------------------------------------GAUCUGGGCGACCCGGCG-GCC",
"UUGG-CUCCGGUUCACGUGCGCG-------------------------AACC---------------------------------------------------------------------CGUGCACGACCCGGCG-GCC",
"CUGG-UUCCGGUUCACGUUCA... | rfam_14_5_ref |
URS0001A23D3E_12908_1-76 | GGGCACCUACGGGGGCCUUUUUACAUCAGGAUCGGGGCCGCGCGCCUUCGGUCCGCCAAGCAAACGGAAGAAGCUA | ((((.(((...)))))))..........(((((((.........))...)))))...................... | [
"URS0001A23D3E_12908/1-76",
"URS0001A236E8_12908/1-66",
"URS0001A2457B_12908/1-61",
"URS0001A23BFA_12908/1-69",
"URS0001A248C5_12908/1-69",
"URS0001A2390E_12908/1-69",
"URS0001A24612_12908/1-68",
"URS0001A246B2_12908/1-65",
"URS0001A23D5B_12908/1-71",
"URS0001A24A63_12908/1-68"
] | [
"GGGC-ACCU--ACG--------------------------------GGG----GCC-UUUUUACAUCA----GGAUC-----------GGGGC-----------------------CGC-------------------------------------------------------------------------GCGCCUUC--------------------G-GUCCG--C--CAAGC-AAACGGA-AGA-AGC-UA",
"GGGC-ACCU--ACG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23D3F_12908_1-39 | GAUUGCAACACUUUAACAACCUCUCUGCAGUCGCGGCUG | (((((((..................)))))))....... | [
"URS0001A23D3F_12908/1-39",
"URS0001A2494B_12908/1-33",
"URS0001A23EB7_12908/1-38",
"URS0001A24506_12908/1-38",
"URS0001A23978_12908/1-33",
"URS0001A24888_12908/1-33",
"URS0001A24888_694427/1-33",
"URS0001A2327B_12908/1-34",
"URS0001A24A08_12908/1-39",
"URS0001A23887_12908/1-39"
] | [
"GAUUGCA--------------------------ACACUUUAACAACCUCUC---UGCAGUCGCGG-CU-G",
"GACUGCA--------------------------------UCUUUUCCUUUC---UGCAGUCGCGG-CU-G",
"GAUUGCA---------------------------CCAAUCAACAACCUCUC---UGCAAUCGCGG-CU-G",
"GAUUGCA---------------------------CUAUAUAACAACCUCUC---UGCAAUCGCGG-CU-G",
"GGUUGCA----... | rfam_14_5_ref |
URS0001A23D4F_12908_1-74 | GUUGCCCCAAUUGUGGGGUUACACUCACGUGUUAAUAGCCUUGUUCUUUGGCCGAACUUGGUGGUUAGUGAAUC | ((.(((..........))).)).........(((((.(((..((((.......))))..))).)))))...... | [
"URS0001A23D4F_12908/1-74",
"URS0001A23E3E_12908/1-71",
"URS0001A24231_12908/1-72",
"URS0001A23282_1035197/1-73",
"URS0001A23E9A_12908/1-71",
"URS0001A24A4D_12908/1-73",
"URS0001A248CF_12908/1-73",
"URS0001A23392_12908/1-73",
"URS0001A2396C_12908/1-73",
"URS0001A2330C_12908/1-74"
] | [
"GUUGCCCCA--AUUG-----------UGGGGUUAC-------ACUCACGUGUUAAUAGCC--UU--GUUC---------UUUGGCC-GAACU-UGGUGGUUAGUG-AAUC",
"GCCCCA-----AUUG--------------UGGGGU----UACACUCACGUGUUAAUAGCC--UA--GUUC---------UUUGGCC-GAAUU-UGGUGGUUAGUG-AAUC",
"CCCCAA-----UUU---------------UUGGGG--GUUACACUCACGUGUUAAUAGCC--UA--GUUC---------UUUG... | rfam_14_5_ref |
URS0001A23D58_12908_1-58 | GAAAGGUUGUGUUGCAAUUGCACGCAACUGGGUGUAUUACCGAGACACCCCAAUUAGG | ....((((((((.........))))))))((((((.(.....).))))))........ | [
"URS0001A23D58_12908/1-58",
"URS0001A23D58_476272/1-58"
] | [
"GAAAGGUUGUGU--UGCAAUUGC------------------------------------------------ACG-CAACUGGGUGUAUU-------------------------------ACC--------------------------------------------------------------------------------------------------------GAGACACCCCAA----UUAGG",
"GAAAGGUUGUGU--UGCAAUUGC--------------------------------------... | rfam_14_5_ref |
URS0001A23D64_12908_1-77 | GAGGGUGUACUUAGAGCCCUCUGCACGAUGUGUGUUAAUAGUAGUGGCUUUUGGCCGAGCCGCACGGUUAGAGAAUC | ((((((.........)))))).............(((((.((..((((((......)))))).)).)))))...... | [
"URS0001A23D64_12908/1-77",
"URS0001A23D64_1122981/1-77",
"URS0001A24623_997352/1-76",
"URS0001A23E2F_12908/1-76",
"URS0001A23528_12908/1-76",
"URS0001A23458_12908/1-76",
"URS0001A23458_702439/1-76",
"URS0001A23DB7_12908/1-76",
"URS0001A24A90_12908/1-76",
"URS0001A2344B_1347790/1-76"
] | [
"GAGGGU-----GUACUUAGA---------GCCCUC---UGCACGAUGUGUGUUAAUAGUAG-UG--GCUU----------UUGGCC-GAGCC-GCACGGUUAGAG-AAUC",
"GAGGGU-----GUACUUAGA---------GCCCUC---UGCACGAUGUGUGUUAAUAGUAG-UG--GCUU----------UUGGCC-GAGCC-GCACGGUUAGAG-AAUC",
"GAGGGU-----GAACUUAGA---------GCCCUC---AGCACGUUGUGUGUUAAUAGCG--CU--GCUU----------UUG... | rfam_14_5_ref |
URS0001A23D68_931277_1-60 | CCUGCUCGCGUGAACCCACGCAGCGGGUCGGUAUGUGGCCCUCACGGGCUGAACCCUCAA | (((((.................)))))..((.....(((((....)))))...))..... | [
"URS0001A23D68_931277/1-60",
"URS0001A24025_1227457/1-60"
] | [
"CCUGCUCGCGUG-----------------------AACC-----------------------------CACGC-AGCGG-G------UCGGUAUGU-GGCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCAC-----------------... | rfam_14_5_ref |
URS0001A23D6A_12908_1-33 | CUCUGGUUUUGCAGGAAACCAGGGCAGAAGGAG | ((((((((........))))))))......... | [
"URS0001A23D6A_12908/1-33",
"URS0001A2436F_1640685/1-33",
"URS0001A2436F_1139219/1-33",
"URS0001A233B0_12908/1-33"
] | [
"CUCUG-------GUUUU--------GCAG-----------------GAAAC-------CAGGG-C--AGAAGGAG",
"CUCUGGC-----GCA----------GCAAA------------------UGA-----ACCAGGG-C---AAAGGAG",
"CUCUG-------GCGCA--------GCAAA----------------UGAAC-------CAGGG-C---AAAGGAG",
"CUCUG-------GUGCA--------GCAAA----------------UGAAC-------CAGGG-C---AAAG... | rfam_14_5_ref |
URS0001A23D6F_12908_1-79 | ACGGUUCCGGUUCACGCCCGAGCCACCGCCACGCUGUUCGGCCAGCAUUGUGGGGGGCAUUGACGGCGACCCGGCGACC | ..(((.((((....((((((........................................))..))))..))))..))) | [
"URS0001A23D6F_12908/1-79",
"URS0001A24A89_12908/1-67",
"URS0001A2378A_1335413/1-37",
"URS0001A24457_219305/1-67"
] | [
"ACGG-UUCCGGUUCACGCC--CGA-GCCACCGCCAC---GCUG-----UUCGGC-----------------------------------------------CAGCAUUGUGG-GG-GGCAUUGACGGCGACCCGGCG-ACC",
"ACGG-UUCCGGUUCACGUCCCGACGGUCGCCCGC--------------AGCG----------------------------------------------------------GCGCCCGGCGCACGGGGCGACCCGGCG-ACC",
"AGGG-UUCCGGUUCACGC---... | rfam_14_5_ref |
URS0001A23D74_12908_1-79 | CUGAUAUCACGCAAAGGGUGGACGUCUUCCCGGAACGAGCCCGUUUCUGCCAUGCUGGCAGAAAACGCGUGAAAGUCAG | (((((..(((((...((((...(((.(.....).))).))))..((((((((...))))))))...)))))...))))) | [
"URS0001A23D74_12908/1-79",
"URS0001A249D8_12908/1-79"
] | [
"CUGAU--AUCACGCAAA---GGGUGGAC---GUCUU---CCC---------GGAAC-GAGCCCGU----UUCUG------CCA----------------UGC--------------------------UGG------------C-AGAAAAC---GCGUGAAA-------GUCAG",
"CUGAU--AUCACGCAAA---GGGUGGAC---GUCUU---CCC---------GGAAC-GAGCCCGU----UUUUG------CC-----------------AUACA-------------------------GG---... | rfam_14_5_ref |
URS0001A23D82_12908_1-28 | CAACCUCUGAUCACCGAGAUGCAUGUUG | ((((...(.(((.....)))..).)))) | [
"URS0001A23D82_12908/1-28",
"URS0001A23D50_12908/1-28",
"URS0001A24725_12908/1-28"
] | [
"CAACCUCUGAUC--ACCGA-------GAUGCAUGUUG",
"CAACCUCUGAUC--AAAGA-------GAUGAAUGUUG",
"CAACCUCUGAUC--AGAGA-------GAUGUAUGUUG"
] | rfam_14_5_ref |
URS0001A23D95_12908_1-77 | CUGUAAAGAUAUGUUGACCUGUAGAGGCGAUACUUUUGGAUGAAAAAUUCGGAGUAAUCAAAAGGCAUGUCGAGGAA | .......(((((((((.(((....))))))..(((((..............(......)))))).))))))...... | [
"URS0001A23D95_12908/1-77",
"URS0001A23811_1123032/1-76",
"URS0001A24885_12908/1-77"
] | [
"CUGUAAAGAUAUG-UU-GACCUGUAG-AGG-CGAUA-CUUUUGGAUGAAAAAUUCGGA-GUAA---------------UCAAAAGGCAU-GUC--GAGG--AA",
"CUGUAAAGAUAUG-UU-GACCCGUAG-GGG-CGGUA-CUUUUGGGUGAAA-AUUCGGA-GUAA---------------UCAAAAGGCAU-GUC--GAGG--AA",
"CUGUAAAGAUAUG-UU-GACCUGUAG-AGG-CGGUA-CUUUUGGAUGAAAAAUUCGAA-GUAA---------------UCAAGAGGCAU-GUC--GA... | rfam_14_5_ref |
URS0001A23DA0_12908_1-68 | GCGGACCUACGGGGCCGCAUAACCUUUCAAACCCCACAUGGGUUUGAAGCUAAAACGGAAGACAGAAA | ((((.(((...))))))).......(((((..(((....))).))))).................... | [
"URS0001A23DA0_12908/1-68",
"URS0001A2491C_12908/1-66",
"URS0001A23790_12908/1-64",
"URS0001A246A2_12908/1-67",
"URS0001A2454C_12908/1-66",
"URS0001A23F54_12908/1-67",
"URS0001A24B1F_12908/1-66",
"URS0001A246E3_12908/1-66",
"URS0001A2450F_12908/1-66"
] | [
"GCGG-ACCU--ACG--------------------------------GGG----CCG-CAUAACCU-------UUCAAAC---------CCC-------------------------ACAU--------------------------------------------------------------------------GGGU----------------------U-UGAAG--CU-A-----AAACGGA-AGACAGA-AA",
"GCGG-ACCU--ACG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23DA1_12908_1-57 | CCUGUUCGGCACACGCCACAGGCAUGGAAUGUGGGCCCUCGAGGCCUGAACCAACGA | (((((............)))))...((.....(((((.....)))))...))..... | [
"URS0001A23DA1_12908/1-57",
"URS0001A24498_12908/1-57"
] | [
"CCUGUUCGGC-------------------------ACAC-------------------------------GCC--ACAG-G-----CAUGGAAUGU-GGGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CUCGA----------------... | rfam_14_5_ref |
URS0001A23DBC_12908_1-75 | CCCGUACGGCAACCGCCCACGGGCCGGGAUGUGGACCUGAUUCGAGGACGUCCUCGAUGCGGUCUGAACCACGAA | (((((.............)))))..((.....(((((.......................)))))...))..... | [
"URS0001A23DBC_12908/1-75",
"URS0001A23CEF_12908/1-63"
] | [
"CCCGUACGGC-------------------------AACC-------------------------------GCCC-ACGG-G------CCGGGAUGU-GGACCUGAUUCGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGU-----------------... | rfam_14_5_ref |
URS0001A23DC5_12908_1-39 | GAUUGCCUUUCAAGCCUUUUCUCUCGGCAAUCGCGGCUG | (((((((..................)))))))....... | [
"URS0001A23DC5_12908/1-39",
"URS0001A244A5_12908/1-39",
"URS0001A23A1D_12908/1-39",
"URS0001A247A3_12908/1-32",
"URS0001A23387_12908/1-33",
"URS0001A240CB_12908/1-34",
"URS0001A24258_12908/1-32",
"URS0001A23C99_12908/1-32",
"URS0001A23AE4_12908/1-34",
"URS0001A23AE4_1236513/1-34"
] | [
"GAUUGCC--------------------------UUUCAAGCCUUUUCUCUC---GGCAAUCGCGG-CU-G",
"GAUUGCC--------------------------UUUUAAGCCUUUUCUCUC---GGCAAUCGCGG-CU-G",
"GAUUGCAA---------------------------CUUUCUUCAACCUCUC--UUGCAAUCGCGG-CU-G",
"GAUUGUA---------------------------------CAAUUCUUCUC---UGCAAUCGCGG-CU-G",
"GAUUACA----... | rfam_14_5_ref |
URS0001A23DC9_12908_1-67 | UAUCUUUGCCGCCUUGAUCAUGAAGUAUCAAGUACAUAAAAAUUAUUAAAAAAUUAAUGUUAGCAUG | .............(((((........))))).................................... | [
"URS0001A23DC9_12908/1-67",
"URS0001A2327E_12908/1-67",
"URS0001A2402F_12908/1-55",
"URS0001A24733_12908/1-55",
"URS0001A23264_12908/1-56",
"URS0001A24007_12908/1-55"
] | [
"UAUCU-UUGCCGCC-------------UUGAU-C-----------AUGAA-----------------GUAUCAA-------------------------------------GUAC-AUAAA-AAUUAUU---AAAAAAUUAAUGUUAGCAUG",
"UAUCU-UUGCCGCC-------------UUGAU-C-----------AUGAA-----------------GCAUCAA-------------------------------------GUAC-AUAAA-AAUUAUU---AAAAAAUUAAUGUUAGCAUG",
... | rfam_14_5_ref |
URS0001A23DD5_2074_1-78 | CCGGCUCCGGUUCACCCACAUCCGGGGGCUCCGCCCCCGGAAGCCCCCGAACGGCGAGGGGUGUGAGACCCGGCGGCC | ..(((.((((....(.((((((.....................................)))))).)..))))..))) | [
"URS0001A23DD5_2074/1-78",
"URS0001A23D57_12908/1-37",
"URS0001A23479_330084/1-38"
] | [
"CCGG-CUCCGGUUCACCCACAUCC----------GGGGGCU-C-----CGCCCCCG---------------------------------------------GAAGCCCCCGAACGGCGAGGGGUGUGAGACCCGGCG-GCC",
"CCGG-CUCCGGUUCACCCU-----------------------------GCUC-------------------------------------------------------------------------AGGGACCCGGCG-GCC",
"CCGG-CACCGGUUCACCCC--... | rfam_14_5_ref |
URS0001A23DDC_12908_1-90 | UGAUAGCUAUGAAACACAGGUUGCUAUACCCCAUAAAAAGGGCAUAGGUUUUGUGUGGAGCGAAGGUCAUGUUACAAAAACUGGCGACAA | .............(((((((...((((................))))..))))))).........(((..((((.......))))))).. | [
"URS0001A23DDC_12908/1-90",
"URS0001A2443E_12908/1-77",
"URS0001A2443E_575593/1-77",
"URS0001A23A07_12908/1-76",
"URS0001A23A07_936594/1-76",
"URS0001A24A54_12908/1-76",
"URS0001A24A54_936595/1-76",
"URS0001A23F0C_12908/1-81",
"URS0001A2473F_12908/1-83",
"URS0001A24206_12908/1-82"
] | [
"UGAUAGCUAUGAAACA-C-AGGUUGCUAUAC----------------------CCC-----------AUAAAAA----------------GGG-------CAUAG-GU--U-UUG-UGUGGAGCGAAGGUCAU-----G--UUACAAAAAC--------------UGGC--------------GACAA",
"UGAUAGCUAUGAAGCA-U-AGGUUGCCGUUU---------------------------------------------------------------------AUCGG-GU--U-UUA-UGUGG... | rfam_14_5_ref |
URS0001A23DE9_12908_1-28 | UAACCACUGACGAUAAUCGUGGAUGUUG | ((((...(.((((...))))..).)))) | [
"URS0001A23DE9_12908/1-28",
"URS0001A24903_12908/1-28",
"URS0001A23854_12908/1-28",
"URS0001A2372D_12908/1-28",
"URS0001A240CA_12908/1-28",
"URS0001A24A99_12908/1-28",
"URS0001A240AB_12908/1-28",
"URS0001A236F9_12908/1-28",
"URS0001A24141_12908/1-28",
"URS0001A23481_12908/1-28"
] | [
"UAACCACUGACGA-UAA--------UCGUGGAUGUUG",
"GAACCACUGACGA-UAC--------UCGUGAAUGUUC",
"UAACCACUGACG--AUAUA-------CGUGUAUGUUG",
"UAACCACUGACG--AUAAC-------CGUGUAUGUUG",
"CAACCACUGACG--AUAAC-------CGUGUAUGUUG",
"CAACCACUGACGA-UAA--------UCGUGUAUGUUG",
"UAACCGCUGACGA-UAA--------UCGUGGAUGUUG",
"UAACCACUGACGA-... | rfam_14_5_ref |
URS0001A23DF4_12908_1-84 | CCGGUUCCGGUUCACGCCUGAGCCCGUCCGCCGUACGCCCUGCGGGGCGGCGGUGGGGACGAGCCGGAUGGCGACCCGGCGACC | ..(((.((((....(((((..............................................)...))))..))))..))) | [
"URS0001A23DF4_12908/1-84",
"URS0001A23EB8_12908/1-70",
"URS0001A23757_47872/1-65",
"URS0001A248C1_457406/1-65",
"URS0001A24359_12908/1-70",
"URS0001A23408_999544/1-56",
"URS0001A23408_1169182/1-56",
"URS0001A23496_1288090/1-56",
"URS0001A23496_1206102/1-56",
"URS0001A23496_1136416/1-56"
] | [
"CCGG-UUCCGGUUCACGCC---UGAGCCCGUCC--GCCGUACGCCC--UGCG----------------------------------------------GGGCG-GCGGUGGGGACGAGC-CGGAUGGCGACCCGGCG-ACC",
"ACGG-UUCCGGUUCCCGC--CCGAG-CCUGCCGCUCC-----------ACCG-------------------------------------------------------GGAGCGGCAGGUCAUGACAGCGACCCGGCG-ACC",
"CCGG-UUCCGGUUCACGCC--... | rfam_14_5_ref |
URS0001A23DFD_12908_1-61 | UUGGUUCCGGUUCACGCCAAGGAGCAGAUCCAGCUCCGCAUCGAAAUGGCGACCCGGUGCC | ..(((.((((....(((((...........................)))))..)))).))) | [
"URS0001A23DFD_12908/1-61",
"URS0001A24253_1800/1-52",
"URS0001A240F8_710421/1-52",
"URS0001A24598_12908/1-52",
"URS0001A24406_12908/1-51"
] | [
"UUGG-UUCCGGUUCACGCCA-----A---GGAGC--------------AGAUCCA-------------------------------------------------------GCUCCGCAUCGAAAUGGCGACCCGGU--GCC",
"UCGG-UUCCGGUUCACGCCGCAGCAUCC--------------------CGACUU--------------------------------------------------------------GGGU----UGGCGACCCGGG--GCC",
"UCGG-UUCCGGUUCACGCCGC... | rfam_14_5_ref |
URS0001A23E01_12908_1-107 | ACCUGGGUGCGAUCUUCGAAAGAUUUACUGCGCAAAACACGAGAGUACGUGCAGUUGCGCGUGGUAGGUCUGAAUUGAAGAACCGGCCCAGUUACAAACCUUAGGGA | ((.((((.....(((((((.(((((.........................................)))))...))))))).....))))))............... | [
"URS0001A23E01_12908/1-107",
"URS0001A23FB4_12908/1-107",
"URS0001A24B16_43769/1-107"
] | [
"ACCUGGGUGCGAUCUUCGA-------------AAGAUUUACU--GCGCAA-AACACG-----------AGAGUA-------------------------CGUGCAGUUGCGCGUGGUAGGUCUGAA------------------------UUGAAGAACCGGCCCA--GU-UACAAACCUUAGGGA",
"ACCUGGGUGCGAUCUUCGA-------------AAGAUUUACU--GCGCAA-GACACG-----------AGAGUA-------------------------CGUGCAGUUGCGCGGGGUAGGUCU... | rfam_14_5_ref |
URS0001A23E0C_12908_1-79 | GGCCACCUUCGGGGGGCUUUAACAUAGCGGACCCGCAGGCAAGCGCCGAGGGGUCCGUGUGCUAGACGGAAGACAGAAA | ((((.(((...)))))))........((((((((................))))))))..................... | [
"URS0001A23E0C_12908/1-79",
"URS0001A244F2_12908/1-72"
] | [
"GGCC-ACCU--UCG--------------------------------GGG----GGC-UUUAACAUA------GCGGA-----------CCC-------------------------GCAGGCAAGCGCCGAG--------------------------------------------------------------GGG-----------------------U-CCGUG-----U--GCUAGACGGA-AGACAGA-AA",
"GGCC-ACCU--UCG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23E10_795797_1-129 | GUGGGAACAGCACGGCCGCAAAUCCGACUCGCCACGAGCCGUCGAUGUCUCCGCGACUCGCGGGCUACGCCCGCUCGUUCGUUUCGAGAUGUGUACGAUGGCUCCGUGGCUCUGGGAUUGCGGUAGUGC | .........((((.(((((((..((.....((((((....................................................................))))))....)).))))))).)))) | [
"URS0001A23E10_795797/1-129",
"URS0001A23E66_12908/1-59",
"URS0001A247DB_1132509/1-63",
"URS0001A24423_1264579/1-61",
"URS0001A24647_1227457/1-61",
"URS0001A247E5_931277/1-61"
] | [
"GUGGGAACAGCACGGCCGCAAAUCCGACUC-GCCACG-AGCCGUCG---AUGUCUC--CGCGACUCGCGGGCUAC--------------------GCCCGCUCGUUCGUUUCGAGAUGUGUACGAUGGCUCCGUGGC-UCU-GGGAUUGCGGUAGUGC",
"AUGGGAACGGCACGACCGCAAAUCCGACUC-GCC--------------------------------------UUCG----------------------------------------------------------GGC-UCU-GGGAUUGCG... | rfam_14_5_ref |
URS0001A23E12_12908_1-60 | GAAAGAUCGGAUUAUCAACAACUGUCCGAUUGGGCGUAUAAGAUGCCCCAAUCAAUUAGU | ....((((((((...........))))))))((((((.....))))))............ | [
"URS0001A23E12_12908/1-60",
"URS0001A246E5_12908/1-55",
"URS0001A2421C_1410610/1-55",
"URS0001A244B0_1280664/1-53",
"URS0001A243CD_1280676/1-53",
"URS0001A23E31_1280678/1-53",
"URS0001A231D2_1280670/1-53",
"URS0001A237DE_1506994/1-53"
] | [
"GAAAGAUCGGAU--UAUCAACAACU----------------------------------------------GUC-CGAUUGGGCGU----------------------------------AUAAG---------------------------------------------------------------------------------------------------------AUGCCCCAAUCAAUUAGU",
"GAAAGAUCGGGC--AGAU-------------------------------------------... | rfam_14_5_ref |
URS0001A23E1B_12908_1-50 | CCCGUCGCGGACGGGCCGGGAUGUGGCCGCAGACGCGGCUGAACCACGAA | (((((.....)))))..((.....(((((......)))))...))..... | [
"URS0001A23E1B_12908/1-50",
"URS0001A241C6_12908/1-49"
] | [
"CCCGUC-----------------------------GCG------------------------------------GACGG-G------CCGGGAUGU-GGCCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAC-----------------... | rfam_14_5_ref |
URS0001A23E2E_12908_1-77 | GGGGAUACGCUUAGAGUCCCCUGGGCAGUGUGUGUUAAUAGCAAUCUCCUGUGGCCGGGAAUUGCGGUUAGUGAAUC | ((((((.........)))))).............(((((.(((...((((......))))..))).)))))...... | [
"URS0001A23E2E_12908/1-77",
"URS0001A24984_585502/1-74",
"URS0001A232A6_12908/1-76",
"URS0001A233BA_12908/1-76",
"URS0001A23535_12908/1-76",
"URS0001A23D00_12908/1-76",
"URS0001A23764_12908/1-76",
"URS0001A23540_12908/1-76",
"URS0001A249B2_12908/1-77",
"URS0001A243C9_12908/1-76"
] | [
"GGGGAUAC---GCUUA-----------GAGUCCCC---UGGGCAGUGUGUGUUAAUAGCAA-UC--UCCU----------GUGGCC-GGGAA-UUGCGGUUAGUG-AAUC",
"AGGGGC-----ACGCUUAGA---------GCCCCU-----CGCACCUUGUGUUAAUAGUG--AU--GCCU----------UUGGCC-GGGCA-UCACGGUUAGUG-AAUC",
"GGGGAUAC---ACUUA-----------GAGUCCCC---UGGGUAUGGUGUGUUAAUAGCA--CG--UCCU----------GUG... | rfam_14_5_ref |
URS0001A23E32_12908_1-66 | UACAUUUGCACCCUCAAGAAAAAAUCUUGGGUUUACAUAAUAAUAAUUUACAAUAAUAUUGGCAUG | .............((((((.....)))))).................................... | [
"URS0001A23E32_12908/1-66",
"URS0001A24129_12908/1-55",
"URS0001A238AC_12908/1-66",
"URS0001A23233_12908/1-66",
"URS0001A233E0_12908/1-65",
"URS0001A23B45_12908/1-65",
"URS0001A233E8_12908/1-66",
"URS0001A235FA_888059/1-54",
"URS0001A235FA_12908/1-54"
] | [
"UACAU-UUGCACCC-------------UCAAGA------------AAAAA------------------UCUUGG-----------------------------------GUUUAC-AUAAU-AAUAAUU---UACAA--UAAUAUUGGCAUG",
"UACAU-UUGCAGCCAUAAAAUCA-----------------------------------------------------------------------------------------UAC-AUAAC-AAACAUU---UAAAA--UAAUUUUAGCAUG",
... | rfam_14_5_ref |
URS0001A23E37_1046627_1-88 | UAUAUUUGCAGCUUGAAAGAAAAUCUUUCAUCAUGUACUCAAUUUAAUUGGGUAAUACAUAACAAUCAUUUACAAUAAUAUUAGAAUG | .............((((((.....)))))).......................................................... | [
"URS0001A23E37_1046627/1-88",
"URS0001A243EA_12908/1-66",
"URS0001A2395F_12908/1-58",
"URS0001A23925_12908/1-59",
"URS0001A24A88_12908/1-88"
] | [
"UAUAU-UUGCAGCU-------------UGAAAG------------AAAAU------------------CUUUCAUCAUG----UACUCAAUUUA-----AUUGGGUA----AUAC-AUAAC-AAUCAUU---UACAA--UAAUAUUAGAAUG",
"UAUAU-UUGCACCU-------------UGAUUCGA----------AAA------------------UCGGGUCU-------------------------------------GUAC-AUAAC-AAUCAUU---UACAA--UAAUAUUAGCAUG",
... | rfam_14_5_ref |
URS0001A23E40_12908_1-94 | CUGAUGGCGGCGCAUGGGUGGAAAUCGGUGUCGAUCGCCCAAUUCCCCUUCGAACUGAUGAGAUGUUCGAAGCUGGAAAACGCCUAAAUGUCAG | (((((...((((...((((....((((....)))).))))..((((.((((((.............))))))..))))..)))).....))))) | [
"URS0001A23E40_12908/1-94",
"URS0001A23344_12908/1-94",
"URS0001A23542_12908/1-94"
] | [
"CUGAU-GGCGGCGCAU----GGGUGGAA---AUCG----GUGU---------CGAU--CGCCCAA----UUCCC------CUUCGAAC-----------UGAUGAGAU---------------GUUCGAAG-----------CU-GGAAA-----ACGCCUAAAU-----GUCAG",
"CUGAU-GGCGGUGCAU----GGGUGGAA---AUCG----GUAU---------CGAU--CGCCCAGU---GCCUCUG----CGAACC-------------GAGAAUGA------------------GGUUCG---... | rfam_14_5_ref |
URS0001A23E46_1324957_1-89 | CCCGGUCCGCCCGGGACGACAUGUGGUCGGCGGGCGUCGUCCGACGCCCGAGGGCGGGGGACCCGCCCGACCGCCGACUGAAUCGCAAG | (((((.....)))))..((.....(((((.............................................)))))...))..... | [
"URS0001A23E46_1324957/1-89",
"URS0001A23D65_1380430/1-88"
] | [
"CCCGG------------------------------UCCGC-----------------------------------CCGG-G------ACGACAUGU-GGUCGGCGGGCG------UCGUCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCCCGAGGG----------... | rfam_14_5_ref |
URS0001A23E5F_12908_1-80 | GAUAUGCGAUGAUGUAUGAGGUUGCGCCAUAACCCACGGCGGUAAUUCAUACGGAGUAUGUCCGAUUUUAAACCGGGCGA | .............(((.(((....((((.........))))....))).)))......((((((.........)))))). | [
"URS0001A23E5F_12908/1-80",
"URS0001A241A6_12908/1-80",
"URS0001A23EAE_12908/1-78",
"URS0001A23270_12908/1-76"
] | [
"GAUAUGCGAUGAUGUAUG-AGGUUGCGCCAUAACCCA---------------------------------------------------------------CGGCG-GU--AAUUCAUACGGAGU--AUGUC-------C--G--AUUUUAAAC--------------CG--------------GGCGA",
"GAUAUGCGAUGAUGUAUG-AGGUUGCGUCAUAACCCA---------------------------------------------------------------CGACG-GU--AAUUCAUACGG... | rfam_14_5_ref |
URS0001A23E68_1078020_1-61 | UCGGUUCCGGUUCACGUCUCACCGCAGGCGCGCGAGCGGCCUGAACUGGCGACCCGGCACC | ..(((.((((....((((..(.........................)))))..)))).))) | [
"URS0001A23E68_1078020/1-61",
"URS0001A2478C_1844/1-46",
"URS0001A2478C_408672/1-46",
"URS0001A23EAA_55952/1-47",
"URS0001A23CD4_12908/1-49"
] | [
"UCGG-UUCCGGUUCACGUCUCACCGCAGGC-GC---------------GCGA-----------------------------------------------------------GCGGCCUGAACU--GGCGACCCGGC--ACC",
"UCGG-UGCCGGUUCACGUC-CCGCA-----------------------ACC--------------------------------------------------------------------UGCGGCGGCGACCCGGA--ACC",
"UCGG-UGCCGGUUCACGUC-C... | rfam_14_5_ref |
URS0001A23E6B_12908_1-97 | CUGACAAAAAUGCAUGGGUCGAUAUCGGAAUCGAUAGCCCGGUCCGCCUCGAAGCACCUUCAAGAAAAGUGCGAACUGGCGAGCGCGUUAAUGUCAG | (((((...(((((..((((...(((((....)))))))))....((((.....((((.(.......).)))).....))))...)))))...))))) | [
"URS0001A23E6B_12908/1-97",
"URS0001A23E6E_12908/1-97",
"URS0001A2425B_12908/1-97"
] | [
"CUGAC-AAAAAUGCAU----GGGUCGAU---AUCG----GAAU---------CGAU-A-GCCCGGUC--CGCCUCGAA--GCACCUU------------CAAGA--------------------AAAGUGC--------GAACU-GGCGAGC---GCGUUAAU-------GUCAG",
"CUGAC-AAAAGCGCAU----GGGUCGAU---AUC-----GGAAUA--------GAU-A-GCCCGGUC--CGCC-UCGAA-GCACCUUC-----------AAG---------------------GAAAGUGC---... | rfam_14_5_ref |
URS0001A23E78_12908_1-79 | CAGGCUCCGGUUCACGACGCGGUUCCGAUGCAUUCCAGCUUCGUGCUCGCCCUGCGCGAGCCCGCUCGACCCGGCGGCC | ..(((.((((....(((.((((.......................................)))))))..))))..))) | [
"URS0001A23E78_12908/1-79",
"URS0001A2399D_12908/1-72",
"URS0001A23B1A_12908/1-79",
"URS0001A23693_12908/1-71"
] | [
"CAGG-CUCCGGUUCACGACGCGG-------------------------UUCCGAUGCAUUCCAGCUUCGUGCUCGCCCUGCGCGAGC----------------------------------CCGC-UCGACCCGGCG-GCC",
"CCGG-CUCCGGUUCACGAUGCGGUACCGAUGCAUCCCCGCUCGC----CCUGC-----------------------------------------------GCGAGC---------------CCGC-UCGACCCGGCG-GCC",
"CCGG-CUCCGGUUCACGAUGC... | rfam_14_5_ref |
URS0001A23E87_12908_1-52 | GCGGUACCGGUUCACGCCGGGGCGGAUUUACCGGCCCGGCGACCCGGCGACC | ..(((.((((....(((((((.............)))))))..))))..))) | [
"URS0001A23E87_12908/1-52",
"URS0001A24618_1463864/1-48",
"URS0001A24618_683219/1-48",
"URS0001A24618_682181/1-48",
"URS0001A24618_355249/1-48",
"URS0001A24B24_12908/1-43",
"URS0001A23BD4_12908/1-44",
"URS0001A2333B_12908/1-45",
"URS0001A2333B_1206731/1-45",
"URS0001A23265_12908/1-41"
] | [
"GCGG-UACCGGUUCACGCCGGGGCGG----------------------AUUUA-----------------------------------------------------------------CCGGCCCGGCGACCCGGCG-ACC",
"UCGG-UCCCGGUUCACGUGGCGCC------------------------AUUCCC------------------------------------------------------------------GGCUCCGCGACCCGGC--ACC",
"UCGG-UCCCGGUUCACGUGGC... | rfam_14_5_ref |
URS0001A23E89_12908_1-90 | GAAAAACUGUAUAUAUAUGCAGUUGGGUAUUUUUCUUUGUACGUCAUUGAACAGGAAUUUCCGUUUUGCAAAGAACAUACCUCAAUUUAG | ....((((((((....))))))))((((((.(..........................................).))))))........ | [
"URS0001A23E89_12908/1-90",
"URS0001A23F17_12908/1-85",
"URS0001A241BD_12908/1-88"
] | [
"GAAAAACUGUAU--AUAU-----------------------------------------------------AUG-CAGUUGGGUAUUUU--------UCUUUGUACGUCAUUGAACAGG-AAUU-----------------------------------------------------------------UCC-GUUUUGCAAAG-----------------------AACAUACCUCAA----UUUAG",
"GAAAAACUACAC--UAU--------------------------------------------... | rfam_14_5_ref |
URS0001A23E8E_12908_1-86 | UAUCUUUGCACGCUGAUUGCGCGUCCUUCGAGAGACGGAGGAACUGACAAUCAAUACAUAAAAAUCAUUUAAAUAAUAUUGGAAUG | .............((((((............................))))))................................. | [
"URS0001A23E8E_12908/1-86",
"URS0001A24485_12908/1-65",
"URS0001A23295_12908/1-64",
"URS0001A23295_1122226/1-64",
"URS0001A24911_946077/1-63",
"URS0001A236D7_63186/1-65",
"URS0001A2465F_980584/1-65",
"URS0001A23221_12908/1-63",
"URS0001A239C0_1123235/1-64",
"URS0001A2413B_1249975/1-64"
] | [
"UAUCU-UUGCACGC-------------UGAUUG-CGCGUCCUUCGAGAGA------CGGAGGAACUGACAAUCA-------------------------------------AUAC-AUAAA-AAUCAUU---UA-AA--UAAUAUUGGAAUG",
"UAUAU-UUGCCGCU-------------UGAUACG-----------AAAGA-----------------CGUAUCG--------------------------------------UGC-AUAAA-AAUCAUU---UACAU--AAAUAUUGGAAUG",
... | rfam_14_5_ref |
URS0001A23EBD_12908_1-97 | GGGCACCUUCGGGGGCCUAUACCCGGUGGGCAGAUUGCCCACCCUACACAUAGCGGACCCCACAAAGGGUACGCGUUUGCUAAACGGAAGACAGAAA | ((((.(((...)))))))......(.((........(((............................))).)))....................... | [
"URS0001A23EBD_12908/1-97",
"URS0001A240D1_12908/1-92",
"URS0001A2453D_74031/1-93"
] | [
"GGGC-ACCU--UCG--------------------------------GGG----GCC-UAUACCC--------GGUGGGCAGAUU----GCCC------------------------ACCCUACACAUAGCGGACCCCACAAA---------------------------------------------------GGGU-----------------------A-CG-CG--UU---UGCUAAACGGA-AGACAGA-AA",
"GGGC-ACCU--UCG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23ECB_12908_1-58 | UUGGUUCCGGUUCACCCCAUGACGCCCUCGCGCCGCGACGGCAGGGGACCCGGCGGCC | ..(((.((((....((((.........................))))..))))..))) | [
"URS0001A23ECB_12908/1-58",
"URS0001A231F7_1283279/1-50",
"URS0001A24B15_12908/1-43",
"URS0001A2409F_12908/1-58",
"URS0001A23241_1160137/1-48",
"URS0001A24098_479431/1-49",
"URS0001A2412E_675635/1-58",
"URS0001A240CC_298654/1-48",
"URS0001A24189_479430/1-49",
"URS0001A2455A_1206742/1-48"
] | [
"UUGG-UUCCGGUUCACCCCAUGACGCCCUCGC----------------GCC-------------------------------------------------------------GCGACGGCA----GGGGACCCGGCG-GCC",
"CUGG-CACCGGUUCACCCGUCGGC------------------------GGCAAUG-----------------------------------------------------------------GCUGGCGGGACCCGGCG-GCC",
"GCGG-UCCCGGUUCACGGCGC... | rfam_14_5_ref |
URS0001A23ECD_12908_1-106 | UGAUAGCGAAGAAGCGAGAGGUUGCCAUCCGAUGGAUGGGUUUUCCGUGGAGCGAAUGUCAAGAGACCGUAGAUCAGCAUAUCACGGUCGGUAAACCUGACGGCAA | .............(((.((((...(((((.....)))))..)))))))........((((....((((.................))))............)))). | [
"URS0001A23ECD_12908/1-106",
"URS0001A23C90_12908/1-106",
"URS0001A2333E_12908/1-104",
"URS0001A234CD_12908/1-104",
"URS0001A23FCD_12908/1-104"
] | [
"UGAUAGCGAAGAAGCGAG-AGGUUGCCAUCCGAUG-----------------------------------------------------------------GAUGG-GU--U-UUC-CGUGGAGCGAAUGUCAAGA---G--ACCGUAGAUCAGCAUAUCAC----GGUCGGUAAACCUGAC--GGCAA",
"UGAUAGCGAAGAAGCGUG-AGGUUGCCAUCCGAUG-----------------------------------------------------------------GAUGG-GU--U-UUC-CGUGG... | rfam_14_5_ref |
URS0001A23ED0_318586_1-73 | GGCCCCGGCAGCGGGGCCGUCGCCUUUUGACUGAAACGGACCACCUCAGGUCCAAAGCAACGGAAGACAGAAA | (((((((....)))))))...(((........................)))...................... | [
"URS0001A23ED0_318586/1-73",
"URS0001A23498_1414586/1-62"
] | [
"GGCC--CCG--GCAG-------------------------------CGG----GGC-CG-------------UCGCC---------------------------------------UUUUGACUGAAACGGACCACCUCA--------------------------------------------------------------------------------G-GUCC------AAAGC--AACGGA-AGACAGA-AA",
"GGGG-AGC---UACGGC------------------------------GC----... | rfam_14_5_ref |
URS0001A23EF9_12908_1-65 | CUGUAAAGACAUGCAGAGCUGUAGAGCCUGUUCUUACAAUAUUAAUGUAAGGCAUGUCGAAGAAA | .......(((((((((.(((....))))))..((((((.......)))))).))))))....... | [
"URS0001A23EF9_12908/1-65",
"URS0001A23BB1_12908/1-60",
"URS0001A23C0E_12908/1-60",
"URS0001A2390A_12908/1-60",
"URS0001A23855_12908/1-61"
] | [
"CUGUAAAGACAUG-CA-GAGCUGUAG-AGC-CUGUU-CUUAC--------------A--AUAUUAA-------------UGUAAGGCAU-GUC--GAAG-AAA",
"CUGUAAAGACAUG-CA-GAGCUGUAG-AGC-CUGUU-CUUAC-----------------AAAAN----------------GUAAGGCAU-GUC--GAAG--AA",
"CUGUAAAGACAUG-CA-GAGCUGUAG-AGC-CUGUU-CUUAC-----------------AAAAC----------------GUAAGGCAU-GUC--GA... | rfam_14_5_ref |
URS0001A23EFC_12908_1-36 | AUUAAUAACGGAGGUCGGGAACCUCAAAUAAUUAAU | ((((((....(((((.....))))).....)))))) | [
"URS0001A23EFC_12908/1-36",
"URS0001A23D42_12908/1-35",
"URS0001A23331_313595/1-35",
"URS0001A23331_12908/1-35",
"URS0001A23F65_12908/1-35",
"URS0001A23E2C_12908/1-35",
"URS0001A241E5_12908/1-35",
"URS0001A24400_12908/1-35",
"URS0001A24842_12908/1-35",
"URS0001A243AC_12908/1-36"
] | [
"AUUAAUAACG-GAGGUCGGGAACCUCAAAUAAUUAA-U",
"AUUAAUAACG-GGAGUCGGGAACUCCAAA-AUUUAA-U",
"AUUAAUAACG-GGAGUCGAGAACUCCAAA-AUUUAA-U",
"AUUAAUAACG-GGAGUCGAGAACUCCAAA-AUUUAA-U",
"AUUAAUAACG-GGAGUCGAGAACUUCAAA-AUUUAA-U",
"AUUAAUAACG-GGAGUCGAGCACUCCAAA-AUUUAA-U",
"AUUAAUAACA-GGGGUCGGGAACCCCAUA-AAUUAA-U",
"AUUAAUA... | rfam_14_5_ref |
URS0001A23EFE_12908_1-39 | GUUCUGGUCGGUAACCUAGAACGCGAGUAAUAAGAGGAG | ((((((((.....))).)))))................. | [
"URS0001A23EFE_12908/1-39",
"URS0001A23873_12908/1-34",
"URS0001A23B01_12908/1-38",
"URS0001A24A40_12908/1-37",
"URS0001A24892_12908/1-37"
] | [
"GU-UCUGGUCGGUAACCUAGAACGCGAGUAAUAAGAGGAG",
"GU-UCUGGUCGGUAACC-AGAAC----ACUUGCGAAGGAG",
"GU-UCUGGUCGGUAACC-AGAACGCGAGUAAUAAGAGGAG",
"GU-CCUGGUCGGUAACC-AGGAC-GCGACCAGAAGAGGAG",
"GU-CCUGGUCGGUAACC-AGGAC-GUGACCAGAAGAGGAG"
] | rfam_14_5_ref |
URS0001A23F26_12908_1-64 | GCCGACCUUCGGGGCGGUUUACUCAAUUCAGGCCUUGUGCCUGACAUACAACGGAAGACAGUUA | ((((.(((...))))))).........(((((.......))))).................... | [
"URS0001A23F26_12908/1-64",
"URS0001A244E7_12908/1-61",
"URS0001A243D7_12908/1-64",
"URS0001A235EC_12908/1-63",
"URS0001A2418A_12908/1-62",
"URS0001A24A27_12908/1-62",
"URS0001A23C4F_12908/1-62",
"URS0001A23B4A_12908/1-62"
] | [
"GCCG-ACCU--UCG--------------------------------GGG----CGG-UUUACUCAAU-----UCAGGCCUUGUG----------------------------------------------------------------------------------------------------------------------------------------C-CUGA---CA---UAC--AACGGA-AGACAGU-UA",
"GCCG-ACCU--UCG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23F37_12908_1-59 | UUGGCUCCGGUUCACGACGGUGCCUGCGCCUGCGCGCAGGCCGGGUCGACCCGGCGGCC | ..(((.((((....((((...(..................)...))))..))))..))) | [
"URS0001A23F37_12908/1-59",
"URS0001A23C6C_12908/1-52",
"URS0001A24AAF_12908/1-46",
"URS0001A2482A_12908/1-50",
"URS0001A247D5_12908/1-49",
"URS0001A240CD_12908/1-51",
"URS0001A23A58_12908/1-59",
"URS0001A246E7_12908/1-57",
"URS0001A23966_12908/1-50",
"URS0001A23445_12908/1-49"
] | [
"UUGG-CUCCGGUUCACGACGGUGCCUGCGC------------------CUGC--------------------------------------------------------------GCGCAGGCCGGGUCGACCCGGCG-GCC",
"UCGG-UUCCGGUUCACGCCGCUGCC-----------------------UCCCAGGAC--------------------------------------------------------------GGGAGG-GCGACCCGGG--GCC",
"CGAG-CACCGGUUCCCGCCCA... | rfam_14_5_ref |
URS0001A23F39_1470562_1-91 | GGGCACCUAAGGGGGCCUAUACCUUGGGCGGCAUUGCCGUCCUCACAUAUUGGUUGAACUCUGUUCGACCGAGCUAAACGGAAGACAGAAA | ((((.(((...))))))).......((((((.............................))))))......................... | [
"URS0001A23F39_1470562/1-91",
"URS0001A24614_12908/1-65",
"URS0001A23442_12908/1-65",
"URS0001A244E9_12908/1-65",
"URS0001A231F8_12908/1-65"
] | [
"GGGC-ACCU--AAG--------------------------------GGG----GCC-UAUACCUU-------GGGCG-----------G---------------------------CAUUGCCGUCCUCACAUAUUGGUUGAACU---------------------------------------------------C-----------------------U-GUUCG-ACC-G-AGCUAAACGGA-AGACAGA-AA",
"GGCC-ACCU--GUG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23F51_12908_1-54 | CGGGAUCGCUCCCGUCAAGGAAUGUGGCUUCAAUUCAGUAAGCCGAACCUGGAG | (((((....)))))....((.....(((((.........)))))...))..... | [
"URS0001A23F51_12908/1-54",
"URS0001A24499_12908/1-52"
] | [
"CGGGA------------------------------UCGC------------------------------------UCCC-G----UCAAGGAAUGU-GGCUU-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAUUCA---------------... | rfam_14_5_ref |
URS0001A23F57_12908_1-87 | CUGGUUCCGGUUCACGUUCCCACCCGGCAAGGGUGUGACACACACAUCCUGCUGCAGUGCGCCGCACAGGGGGACGACCCGGCGACC | ..(((.((((....(((((((................................................)))))))..))))..))) | [
"URS0001A23F57_12908/1-87",
"URS0001A2334A_12908/1-87",
"URS0001A2420F_12908/1-84",
"URS0001A23767_356829/1-46"
] | [
"CUGG-UUCCGGUUCACGUUCCC--------------------------ACCCGGCAAGGGUGUGACACACACAUCCUGCUGCAGUGCGCCGCACAG--------------------------GGGGACGACCCGGCG-ACC",
"CUGG-UUCCGGUUCACGUUCCCG-------------------------AUCAGCAAGGGUGUGACACACACGACCUGCUGCAGUGCGCCGCACA---------------------------CGGGAACGACCCGGCG-ACC",
"CUGG-UUCCGGUUCACGUUCC... | rfam_14_5_ref |
URS0001A23F5C_12908_1-28 | AAACCUCUGGCGAAAAUCGUGCAUGUUC | .(((...(.((((...))))..).))). | [
"URS0001A23F5C_12908/1-28",
"URS0001A24229_12908/1-28",
"URS0001A24A56_12908/1-28",
"URS0001A2490D_12908/1-28",
"URS0001A23201_12908/1-28",
"URS0001A2369A_12908/1-28",
"URS0001A2436C_12908/1-28",
"URS0001A2498E_12908/1-28",
"URS0001A24456_12908/1-28",
"URS0001A23DEB_1848903/1-28"
] | [
"AAACCUCUGGCGA-AAA--------UCGUGCAUGUUC",
"AAACCUCUAGCGA-AAA--------UCGUGUACGUUU",
"CAACCUCUGGCGA-AAC--------UCGUGCAUGUUG",
"AAACCUCUGGCGA-AAA--------UCGUGAAUGUUU",
"UAACCUCUGGCG--AAAUA-------CGUGUAUGUUA",
"UAACCUCUGGCG--AAAGA-------CGUGCAUGUUG",
"UAACCUCUGGCG--AAAGA-------CGUGCAUGUUA",
"UAACCUCUGGCG--... | rfam_14_5_ref |
URS0001A23F5E_12908_1-52 | GCGGACUACCAGAGUCCGCUGGGAUGUAGCCCAAACCGGGCUGAACCGCAAA | (((((.........))))).((.....(((((.....)))))...))..... | [
"URS0001A23F5E_12908/1-52",
"URS0001A23E9F_12908/1-51",
"URS0001A23786_12908/1-47",
"URS0001A236A6_12908/1-51",
"URS0001A24820_12908/1-49",
"URS0001A232BD_12908/1-46",
"URS0001A247B2_12908/1-47",
"URS0001A23DBA_12908/1-46",
"URS0001A247CD_12908/1-46",
"URS0001A234B1_12908/1-52"
] | [
"GCGGACU----------------------------ACCAGA---------------------------------GUCCG-C-------UGGGAUGU-AGCCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACC----------------... | rfam_14_5_ref |
URS0001A23F71_1354722_1-78 | GGUCACCCAUCAUGGGGGGCUACAACUCAGGCGGGGCCAUUUCGGUGGUUCACGUCAAUAGCAAACGGAAGACAGAAA | ((((.(((......)))))))........((((((((..........)))).))))...................... | [
"URS0001A23F71_1354722/1-78",
"URS0001A24051_12908/1-65",
"URS0001A23841_12908/1-65",
"URS0001A239B0_12908/1-64",
"URS0001A249AA_12908/1-69"
] | [
"GGUC-ACCC--AUCAUG-----------------------------GGG----GGC-UACAACUCA------GGCGG-----------GGCC------------------------AUUUCGGU---------------------------------------------------------------------GGUU-----------------------CACGUCA-A---U-AGC-AAACGGA-AGACAGA-AA",
"GGCC-ACCU--UCG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23F75_290400_1-73 | GGGCACCUACGGGGGCCUUUAACAUCCGGUCGCGCGAAACAUGCGGGGCCGUCAAGCAAACGGAAGACAGUGA | ((((.(((...)))))))........(((((.((.........)).)))))...................... | [
"URS0001A23F75_290400/1-73",
"URS0001A24437_12908/1-69",
"URS0001A2449C_12908/1-42",
"URS0001A2449C_1300350/1-42"
] | [
"GGGC-ACCU--ACG--------------------------------GGG----GCC-UUUAACAUC------CGGUC-----------GCGC------------------------GAAACAU----------------------------------------------------------------------GCGG-----------------------G-GCCG---UC-A-AGC-AAACGGA-AGACAGU-GA",
"GGGG-ACCU--UCG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23F83_12908_1-103 | CUGAAGGCCGCGUCUGGGUCAAUUGCGACAUGCAACACCCACUCGCCCUCAUCGCCCCACCUGAGGUGGGCACACUGGAUGAGGGCGACCGCGUCACCAUCAG | ((((....((((...((((...(((((...))))).))))..(((((((((((........................))))))))))).))))......)))) | [
"URS0001A23F83_12908/1-103",
"URS0001A23872_12908/1-103",
"URS0001A24918_12908/1-103",
"URS0001A23249_12908/1-103",
"URS0001A23C15_12908/1-103"
] | [
"CUGAA-GGCCGCGUCU----GGGUCAAU---UGCG----ACA----------UGCA-ACACCCAC----UCGCC------CUCAUC------GCCCCACCUGAG--------GU-GGGCACACUGGAUGAG------------G-GCGA------CCGCGUCACC-----AUCAG",
"CUGAA-GGCCGCGUCU----GGGUCAAU---UGCG----AAC----------UGCA-ACACCCAC----UCGCC------CUCAUC--GC---CCCACCCGA----------GGUGGGACCGCUGGAUGAG---... | rfam_14_5_ref |
URS0001A23F86_12908_1-51 | GAAAGGCCGCAGGUGUGCUGCGGCUGGGCAGCGCUUACUGCCCCAGUUAGA | ....((((((((.....))))))))((((((......))))))........ | [
"URS0001A23F86_12908/1-51",
"URS0001A245CD_12908/1-48"
] | [
"GAAAGGCCGCAG--GUGUG----------------------------------------------------CUG-CGGCUGGGCAG----------------------------------CGCUUA--------------------------------------------------------------------------------------------------------CUGCCCCAG----UUAGA",
"GAAAGGCUGCAG--GCGG-------------------------------------------... | rfam_14_5_ref |
URS0001A23F8E_1090322_1-63 | CGGGAUUAGUCCCGUGGGAAUGUAGCUUUUGUAAUAAUUAGAAGCCAAAAGCUGAACCGUGAA | (((((....)))))..((....(((((......................)))))..))..... | [
"URS0001A23F8E_1090322/1-63",
"URS0001A23B9D_12908/1-52",
"URS0001A23991_12908/1-52",
"URS0001A244F1_12908/1-52"
] | [
"CGGGA------------------------------UUAG------------------------------------UCCC-G------UGGGAAUG--UAGCUUUUG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAAUAAUUAGAAGC-------... | rfam_14_5_ref |
URS0001A23F94_12908_1-51 | CGGACUAACUUGUCCGUUGGGAUGUGGUCCCUUUGGGGACUGAACCGCAAA | (((((......)))))..((.....(((((......)))))...))..... | [
"URS0001A23F94_12908/1-51",
"URS0001A23628_12908/1-49",
"URS0001A2487D_12908/1-51",
"URS0001A24073_12908/1-51",
"URS0001A23D7A_12908/1-51",
"URS0001A24705_12908/1-49",
"URS0001A24438_12908/1-49"
] | [
"CGGAC------------------------------UAACUU----------------------------------GUCC-G------UUGGGAUGU-GGUCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUUG-----------------... | rfam_14_5_ref |
URS0001A23F96_12908_1-73 | GCGGACCUACGGGGCCGCGCACACUUUCAGCCCUUGAAUUAUUCAAGGCUGAGCAUGAAACGGAAGACAGAAA | ((((.(((...)))))))........(((((.(((.........))))))))..................... | [
"URS0001A23F96_12908/1-73",
"URS0001A23296_12908/1-62",
"URS0001A232AD_388401/1-73",
"URS0001A24AD2_12908/1-65",
"URS0001A23C74_12908/1-65",
"URS0001A23DC7_12908/1-65"
] | [
"GCGG-ACCU--ACG--------------------------------GGG----CCG-CGCACACUU------UCAGCC----------CUUGAA----------------------UUA------------------------------------------------------------------------UUCAAG-----------------------G-CUGAG--CA---UG--AAACGGA-AGACAGA-AA",
"GCGG-ACCU--ACG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A23FA1_1410648_1-47 | ACGGUUCCGGUUCACGCCCGCCAUAGGGGCUGGCGACCCGGGUCACC | ..(((.((((....((((.(((.....))).))))..))))...))) | [
"URS0001A23FA1_1410648/1-47",
"URS0001A23DAD_212365/1-44",
"URS0001A245D4_158787/1-45",
"URS0001A231BA_1437596/1-45",
"URS0001A23B03_1121111/1-45",
"URS0001A23B03_1435463/1-45",
"URS0001A23B83_33905/1-45",
"URS0001A24606_1410645/1-45",
"URS0001A2410F_1121110/1-46",
"URS0001A23DCB_1695/1-47"
] | [
"ACGG-UUCCGGUUCACGCCCGCC-------------------------AUAGG--------------------------------------------------------------------GGCUGGCGACCCGGGUCACC",
"ACGG-UUCCGGUUCACGCCCGCC-------------------------AUAGG--------------------------------------------------------------------GGUUGGCGACCCGG---GCC",
"UAGG-UUCCGGUUCACGCCCG... | rfam_14_5_ref |
URS0001A23FA6_12908_1-54 | GCGGAUAAACAUCCGCUGGAAUGUAACCCUACAAGCAAAGGGUUGAACCAUAAA | (((((......))))).((.....(((((..........)))))...))..... | [
"URS0001A23FA6_12908/1-54",
"URS0001A2440C_12908/1-54",
"URS0001A23869_12908/1-47",
"URS0001A232C4_12908/1-45",
"URS0001A23E27_12908/1-46",
"URS0001A23B4D_12908/1-46",
"URS0001A23E80_12908/1-54",
"URS0001A24268_12908/1-47"
] | [
"GCGGAU-----------------------------AAAC-----------------------------------AUCCG-C-------UGGAAUGU-AACCCU-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGCAA-------------... | rfam_14_5_ref |
URS0001A23FB3_12908_1-55 | UCGGUCCCGGUUCACGUCUGUUGCUCGCAGGUCAUGCGCAGGCGACCCGGCGGCC | ..(((.((((....((((((..................))))))..))))..))) | [
"URS0001A23FB3_12908/1-55",
"URS0001A23376_68199/1-48",
"URS0001A231D9_1386082/1-47",
"URS0001A2490A_1206737/1-50",
"URS0001A24172_12908/1-46",
"URS0001A2484A_196162/1-46",
"URS0001A24132_1283283/1-50",
"URS0001A23EAB_132474/1-45",
"URS0001A23EAB_1927/1-45",
"URS0001A23EAB_35619/1-45"
] | [
"UCGG-UCCCGGUUCACGUCUGUUGCUCGCA------------------GGUCA-------------------------------------------------------------UGCG-----CAGGCGACCCGGCG-GCC",
"UCGG-CCCCGGUUCACGUUUGCCGCG----------------------CCC-------------------------------------------------------------------CGCGG-AAGCGACCCGGA--GCC",
"UCGGUCUGCGGUUCACGCCUG... | rfam_14_5_ref |
URS0001A23FBD_12908_1-62 | GAAAGGCUGCGGAAGUUAUCUGACCCGCGGCUGGGUGUGAAUACCGACACACCUCAAUUAGG | ....((((((((............))))))))(((((((........)))))))........ | [
"URS0001A23FBD_12908/1-62",
"URS0001A232A3_12908/1-58",
"URS0001A23521_12908/1-57"
] | [
"GAAAGGCUGCGG--AAGUUAUCUGAC---------------------------------------------CCG-CGGCUGGGUGUG---------------------------------AAUACCGA-----------------------------------------------------------------------------------------------------CACACCUCAA----UUAGG",
"GAAAGGCCGUGGAUCUUAC------------------------------------------... | rfam_14_5_ref |
URS0001A23FC2_1392489_1-35 | GAUUUUGCGAAGGACUAGACCUUAAUUCCUUAAUC | ((((..(.(((((......))))....))..)))) | [
"URS0001A23FC2_1392489/1-35",
"URS0001A2440D_12908/1-32",
"URS0001A23FC2_12908/1-35",
"URS0001A23D2F_12908/1-32",
"URS0001A23E62_12908/1-32",
"URS0001A236A3_12908/1-33",
"URS0001A24695_12908/1-32"
] | [
"G-AU-UUUGCGAAGGACUAGA----------CCUUAAU-UC-CUUAAU--C",
"G-AU-U-GUCGAAGGAACGA-----------CCUUAAU-UC-A-CAAU--C",
"G-AU-UUUGCGAAGGACUAGA----------CCUUAAU-UC-CUUAAU--C",
"G-AU-U-AUCGAAGGAAAGA-----------CCUUAAU-UC-G-UAAU--C",
"U-UU-U-GUCGAAGGAGAGA-----------CCUUAAU-UC-A-CAAA--A",
"U-UU-U-GUCGAAGGAUAGA----------... | rfam_14_5_ref |
URS0001A23FC3_12908_1-97 | CUGACAAAUUCGUAUGGGUCGAUAUCGGAAUAGAUAGCCCGGUUCGCCUUGAAGUACUUUCGAAGGAAGUAUCAAUAGGAGAACGCGUUAAUGUCAG | (((((.....(((..((((...((((......))))))))...((.(......((((((.......))))))......).))..))).....))))) | [
"URS0001A23FC3_12908/1-97",
"URS0001A24660_12908/1-97",
"URS0001A237E7_12908/1-97"
] | [
"CUGAC-AAAUUCGUAU----GGGUCGAU---AUC-----GGAAUA--------GAU-A-GCCCGGU----UCGCCUUGAAGUACUUUC-----------GAA---------------------GGAAGUAU------CAAUAGG-AGAAC-----GCGUUAAU-------GUCAG",
"CUGAU-AAAUAUGCAU----GGGUCGAU---AUC-----GGAAUA--------GAU-A-GCCCGG----UUCCUCUUAAAGUACUUC------------AGCAG--------------------GAAGUAU---... | rfam_14_5_ref |
URS0001A23FCC_1122611_1-63 | CGGGCCCCCUGGCGAUCAGGGGGCCUGGCGGCCCGACUCCGGUACCUGGCACGGCCGGGGCGG | (((((((((.........))))))))).....(((.(((((((..........)))))))))) | [
"URS0001A23FCC_1122611/1-63",
"URS0001A24586_1580530/1-55",
"URS0001A233C9_12908/1-56",
"URS0001A24204_359159/1-55",
"URS0001A244F5_12908/1-61",
"URS0001A24801_12908/1-61",
"URS0001A23680_1156844/1-57"
] | [
"CGGGCCCCCUGG----CGA------------------------UCAGGGGGCCUGGCGGC--CCGA-CUCCGGUACCUGGCACGGCCGGGG--CGG",
"CGGACCC---------GUCCC---------------------------GGGUCUGGCGG---CCCGACCCCGGUACCUGGCACGGCCGGGG--CGG",
"CGGCGCCGCG------CGA--------------------------CGCGGCGCCGGC-----CCGA-CUCCGGUACCUGGUACGGCCGGGG--CGG",
"CCGCGCCUG... | rfam_14_5_ref |
URS0001A23FDD_729_1-51 | CACGCGGUGUAAGUGGAAAGCAUUUAUUGCGGCGUGGCUUCAAUUUGAGGU | (((((.((..(((((.....)))))...)).)))))............... | [
"URS0001A23FDD_729/1-51",
"URS0001A240A2_667128/1-50",
"URS0001A23E16_12908/1-51",
"URS0001A23E16_729/1-51",
"URS0001A24089_758/1-51",
"URS0001A24A70_12908/1-51",
"URS0001A24A5F_12908/1-51",
"URS0001A2492B_12908/1-51",
"URS0001A243FF_12908/1-51",
"URS0001A24327_726/1-51"
] | [
"CACGCGGUGUAAGUG--------------------GAAAG--------------------------------CAUUU-AUUGCGGCGUGGCUUCAAUUU----GAGGU",
"CACGCGGUGUCGG-U--------------------UUUGA--------------------------------GCUUG-AUAGCGGCGUGGCUUCAAUUU----GAGGU",
"CACGCGGUGUAAGUG--------------------GAAAG--------------------------------CAUUU-AUAGCGGCG... | rfam_14_5_ref |
URS0001A23FED_1144300_1-34 | CUAUGUUUCAGGCAAUGAUUCAUGGCCAAAGGAG | (((((..(((.....)))..)))))......... | [
"URS0001A23FED_1144300/1-34",
"URS0001A234AF_97478/1-34",
"URS0001A234AF_12908/1-34",
"URS0001A23C51_1335616/1-33",
"URS0001A2364D_12908/1-33",
"URS0001A2364D_575594/1-33",
"URS0001A2364D_1203076/1-33",
"URS0001A234AF_525309/1-34",
"URS0001A234AF_908339/1-34",
"URS0001A234AF_944562/1-34"
] | [
"CUAUGUU-----UCA----------GGCAA------------------UGA-----UUCAUGG-C--CAAAGGAG",
"CUAUGUU-----UCA----------GGCAA------------------UGA-----UUCAUGG-C--AAAAGGAG",
"CUAUGUU-----UCA----------GGCAA------------------UGA-----UUCAUGG-C--AAAAGGAG",
"CUAUGUU-----UCA----------GUCAA------------------UGA-----UUCAUGG-C---AAAG... | rfam_14_5_ref |
URS0001A23FFA_877455_1-49 | UGGGAUAAGUAAAACCAUCCCAUGGAUGUGGCGCAAGCUGAACAAAGAG | (((((............)))))..(....(((....)))...)...... | [
"URS0001A23FFA_877455/1-49",
"URS0001A23DF5_12908/1-42",
"URS0001A244F7_12908/1-41",
"URS0001A23813_12908/1-44",
"URS0001A24722_408577/1-42",
"URS0001A23FA3_12908/1-42",
"URS0001A238B7_12908/1-42",
"URS0001A248C0_12908/1-47",
"URS0001A23446_12908/1-47",
"URS0001A2397A_1204725/1-47"
] | [
"UGGGAU-----------------------------AAGUAAAACC-----------------------------AUCCC-A-------UGG-AUGU-GGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAA-----------------... | rfam_14_5_ref |
URS0001A24006_12908_1-79 | ACCCGUGAACUGUGGGGCACACCUGUCUCCCCCUGCAGAUCCGGGUGCGGGGCAACCCGUUUAGCCGAUUCUCAAGGAG | ..(((.((.((((((((.............)))))))).)))))..(((((....)))))................... | [
"URS0001A24006_12908/1-79",
"URS0001A24094_12908/1-78",
"URS0001A24615_12908/1-78",
"URS0001A23B0C_12908/1-77",
"URS0001A24653_12908/1-77",
"URS0001A244D0_12908/1-77",
"URS0001A24318_12908/1-78",
"URS0001A23B21_12908/1-78",
"URS0001A240A8_12908/1-78",
"URS0001A23375_12908/1-78"
] | [
"ACCCGUGAACUGUGGGG--CACACCUGUCUCCCCCUGCAGAUCCGGGU------------------GCGGG-------GCAA---------CCCGU-----------UUAGCCGAUUCUCAAGGAG",
"ACUCGUGAACUGUGGGG---CUUAAUGUCUCCCCCUUCAGAUCCGGGU------------------GCGG--------GAAUAU--------CCGC-----------UUAACCGACCCACAAGGAG",
"ACUCGUGAACUGUGGGG---CUUAAUCUCUCCCCCUUCAGAUCCGGGU---... | rfam_14_5_ref |
URS0001A24012_1123241_1-79 | CAGGCUCCGGUUCACGGUGCCCGCUUCGAGAGUCGGCCGAUCCGUCGGCGGCUCAGCGGCGAGCAGCGACCCGGCGGCC | ..(((.((((....((.(((.(......................................).))).))..))))..))) | [
"URS0001A24012_1123241/1-79",
"URS0001A23E42_12908/1-43",
"URS0001A249AF_12908/1-46",
"URS0001A2459F_1208314/1-46",
"URS0001A24958_38312/1-43",
"URS0001A236A7_12908/1-47"
] | [
"CAGG-CUCCGGUUCACGGUGCCCGCUUCGAGAGUCGGCCGA-------UCCG---------------------------------------------------UCGG-CGGCUCA-GCGGCGAGCAGCGACCCGGCG-GCC",
"CAGG-CUCCGGUUCACGCCG----------------------------ACAUCCGA--------------------------------------------------------------------CGGCGACCCGGCG-GCC",
"CAGG-UUCCGGUUCACGUCCG... | rfam_14_5_ref |
URS0001A24013_12908_1-66 | GGGGACCUUCGGGGGCCCUAUCAAUCGCGGCGCGUAAAGUGCUGCAUUUAUAACGGAAGACAGAAA | ((((.(((....))))))).......(((((((.....)))))))..................... | [
"URS0001A24013_12908/1-66",
"URS0001A240C5_12908/1-64",
"URS0001A23975_12908/1-65",
"URS0001A24687_12908/1-64",
"URS0001A23DF1_12908/1-65",
"URS0001A23679_12908/1-64"
] | [
"GGGG-ACCU--UCGG-------------------------------GGG----CCC-UAUCAAUC-------GCGGC-----------GC--------------------------GUAAA--------------------------------------------------------------------------GU-----------------------G-CUGCA--UUUA-----UAACGGA-AGACAGA-AA",
"GGGG-ACCU--UCG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A24022_1122614_1-75 | GGUCACCUUCGGGGGGCCAUACAUAUAGGCGGGCCGGCCUGGCCGCACCCGCCGCUAGCAAACGGAAGACAGAAA | ((((.(((...))))))).........((((((..............))))))...................... | [
"URS0001A24022_1122614/1-75",
"URS0001A23A17_1123247/1-64",
"URS0001A23791_12908/1-60",
"URS0001A24095_12908/1-64",
"URS0001A248D7_12908/1-65",
"URS0001A24B27_12908/1-67",
"URS0001A23A84_1353528/1-67"
] | [
"GGUC-ACCU--UCG--------------------------------GGG----GGC-CAUACAUAUA-----GGCGG-----------G---------------------------CCGGCCUGGCCGCA------------------------------------------------------------------C-----------------------C-CGCCG--C--U-AGC-AAACGGA-AGACAGA-AA",
"GGGC-ACCC--AAG--------------------------------GGG----... | rfam_14_5_ref |
URS0001A24023_12908_1-62 | CGAGCUCCGGUUCACGGCGCCGCUGUGCAGAUGGUGUGCAGGCGGCAGCCGACCCGGCGGCU | ..(((.((((....(((((((......................))).))))..))))..))) | [
"URS0001A24023_12908/1-62",
"URS0001A231B7_12908/1-50",
"URS0001A23F41_12908/1-51",
"URS0001A24726_12908/1-55"
] | [
"CGAG-CUCCGGUUCACGGC-GCCGC-UGUGCA----------------GAUGG-----------------------------------------------------------UGUGCAGGCGGCAGCCGACCCGGCG-GCU",
"CGAC-A-CCGGUUCACGGCGGCAUCC----------------------AUCCG-----------------------------------------------------------------GGGUGCCGACGACCCGGCG-UC-",
"ACGA-CACCGGUUCACGGCGG... | rfam_14_5_ref |
URS0001A24031_465543_1-59 | CCGUCGGGGGGUCUCCUCCGCGCGGACACUGUCGUCGGUACCUCGUACGGCCGGCGCAG | ((((((((........)))).))))...(((.(((((((..........)))))))))) | [
"URS0001A24031_465543/1-59",
"URS0001A2351A_683219/1-57",
"URS0001A2351A_682181/1-57",
"URS0001A2351A_591157/1-57",
"URS0001A2351A_355249/1-57",
"URS0001A23F8D_1463864/1-57"
] | [
"CCGU-CGGGGG-----GUCU------------------------CCUCCGCGCGGACA----CUGU-CGUCGGUACCUCGUACGGCCGGCG--CAG",
"CCGU-CGGGG------GUUU-------------------------CCCCGCGCGGACA----CUGU-CGUCGGUACCUCGUACGGCCGGCG--CAG",
"CCGU-CGGGG------GUUU-------------------------CCCCGCGCGGACA----CUGU-CGUCGGUACCUCGUACGGCCGGCG--CAG",
"CCGU-CGGG... | rfam_14_5_ref |
URS0001A24032_12908_1-55 | CGGGAUCCGUCCCGUUGGAAUGUGGCCGCGAAAAAAAAGGCGGCUGAACCGUGAA | (((((....)))))..((.....(((((............)))))...))..... | [
"URS0001A24032_12908/1-55",
"URS0001A239DC_12908/1-47",
"URS0001A247C1_12908/1-55",
"URS0001A23D5E_12908/1-54",
"URS0001A2443B_12908/1-55",
"URS0001A241C8_12908/1-55",
"URS0001A24ABD_12908/1-53",
"URS0001A2492D_12908/1-47",
"URS0001A23C28_12908/1-48",
"URS0001A23BF4_259564/1-51"
] | [
"CGGGA------------------------------UCCG------------------------------------UCCC-G------UUGGAAUGU-GGCCGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAAAAAG-----------... | rfam_14_5_ref |
URS0001A2403A_12908_1-107 | UGAUAGCGUUGAAGCGUGAGGUUGCUGCAGGGCCGAAAGGCACUGCAGGUUUUCCGUGGAGCGAAUGUCAAGAGGCCGCGUAAGAUGGCCAAAGAACCUGACGGCAA | .............(((.((((...(((((..............)))))..)))))))........((((....((((.........))))............)))). | [
"URS0001A2403A_12908/1-107",
"URS0001A24215_12908/1-90",
"URS0001A24010_12908/1-96"
] | [
"UGAUAGCGUUGAAGCGUG-AGGUUGCUGCAGG---------------------GCC-----------GAAA-------------------GGCAC-----UGCAG-GU--U-UUC-CGUGGAGCGAAUGUCAAGA---G--GCCGCGUAAGAU------------GGCCAAAGAACCUGAC--GGCAA",
"UGAUAGCUGUGAAGCGUG-AGGUUGCCGGUUC---------------------CCA-----------GUAA-------------------UGGAG-----AUCGG-GU--U-UUC-CGUGG... | rfam_14_5_ref |
URS0001A2403B_12908_1-100 | CUGACGGCCGCGUCCGGGUCAAUUGCGGACUGCAACACCCAAUCUCCCUCCUCCUCCCGGAUGGGAUGGAGGUGUCGGACGGAGAGCGCGUCGCCAUCAG | ((((....(((((..((((...(((((...))))).))))..(((((.(((.........................))).))))))))))......)))) | [
"URS0001A2403B_12908/1-100",
"URS0001A24433_12908/1-100",
"URS0001A2329C_12908/1-100",
"URS0001A24316_12908/1-100",
"URS0001A24904_1604004/1-100"
] | [
"CUGAC-GGCCGCGUCC----GGGUCAAU---UGCG----GAC----------UGCA-ACACCCAA----UCUCC------CUCCU---CCUCC------CGGAUGGGAU---------GGAGGUGUCGGAC------------G-GAGA------GCGCGUCGCC-----AUCAG",
"CUGAC-GGCCGCGUCC----GGGUCAAU---UGCG----AAC----------UGCA-ACACCCAACC--GCCCU------CCGUGCGCCUCCG------UCGA---------------UGGAGG--UGCGG---... | rfam_14_5_ref |
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