repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
ibis-project/ibis | ibis/backends/pandas/execution/generic.py | 1 | 35994 | """Execution rules for generic ibis operations."""
import collections
import datetime
import decimal
import functools
import math
import numbers
import operator
from collections.abc import Sized
from typing import Optional
import numpy as np
import pandas as pd
import toolz
from pandas.api.types import DatetimeTZDtyp... | apache-2.0 |
crpurcell/friendlyVRI | Imports/vriCalc.py | 1 | 42516 | #!/usr/bin/env python
#=============================================================================#
# #
# NAME: vriCalc.py #
# ... | mit |
sarwojowo/KerasProject | keras/callbacks.py | 1 | 39842 | from __future__ import absolute_import
from __future__ import print_function
import os
import csv
import six
import numpy as np
import time
import json
import warnings
from collections import deque
from collections import OrderedDict
from collections import Iterable
from .utils.generic_utils import Progbar
from . im... | mit |
yavalvas/yav_com | build/matplotlib/lib/matplotlib/mlab.py | 1 | 127545 | """
Numerical python functions written for compatability with MATLAB
commands with the same names.
MATLAB compatible functions
-------------------------------
:func:`cohere`
Coherence (normalized cross spectral density)
:func:`csd`
Cross spectral density uing Welch's average periodogram
:func:`detrend`
... | mit |
zfrenchee/pandas | pandas/core/sparse/series.py | 1 | 30105 | """
Data structures for sparse float data. Life is made simpler by dealing only
with float64 data
"""
# pylint: disable=E1101,E1103,W0231
import numpy as np
import warnings
from pandas.core.dtypes.missing import isna, notna
from pandas.core.dtypes.common import is_scalar
from pandas.core.common import _values_from_o... | bsd-3-clause |
ljchang/neurolearn | nltools/data/adjacency.py | 1 | 35665 | from __future__ import division
'''
This data class is for working with similarity/dissimilarity matrices
'''
__author__ = ["Luke Chang"]
__license__ = "MIT"
import os
import pandas as pd
import numpy as np
import six
from copy import deepcopy
from sklearn.metrics.pairwise import pairwise_distances
from sklearn.mani... | mit |
anntzer/scikit-learn | sklearn/linear_model/_coordinate_descent.py | 2 | 93036 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Gael Varoquaux <gael.varoquaux@inria.fr>
#
# License: BSD 3 clause
import sys
import warnings
import numbers
from abc import ABCMeta, abstractm... | bsd-3-clause |
santosjorge/cufflinks | cufflinks/tools.py | 1 | 45488 | import copy
import numpy as np
import pandas as pd
import plotly.offline as py_offline
import plotly.figure_factory as ff
from plotly.graph_objs import Figure, Scatter, Line
from plotly.subplots import make_subplots
# from plotly.graph_objs.layout import XAxis, YAxis
from . import themes
from . import auth, ta
from .... | mit |
microsoft/EconML | econml/_cate_estimator.py | 1 | 58213 | # Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License.
"""Base classes for all CATE estimators."""
import abc
import numpy as np
from functools import wraps
from copy import deepcopy
from warnings import warn
from .inference import BootstrapInference
from .utilities import (ten... | mit |
BhallaLab/moose-core | python/rdesigneur/rdesigneur.py | 1 | 71897 | # -*- coding: utf-8 -*-
#########################################################################
## rdesigneur0_5.py ---
## This program is part of 'MOOSE', the
## Messaging Object Oriented Simulation Environment.
## Copyright (C) 2014 Upinder S. Bhalla. and NCBS
## It is made available under the terms of th... | gpl-3.0 |
yarikoptic/NiPy-OLD | nipy/neurospin/spatial_models/structural_bfls.py | 1 | 34183 | """
The main routine of this module aims at performing the
extraction of ROIs from multisubject dataset using the localization.
This has been published in Thirion et al. Structural Analysis of fMRI
Data Revisited: Improving the Sensitivity and Reliability of fMRI
Group Studies. IEEE TMI 2007
Author : Bertrand Thiri... | bsd-3-clause |
opalytics/opalytics-ticdat | ticdat/testing/testpandat_io.py | 1 | 34733 | import unittest
from ticdat.pandatfactory import PanDatFactory
from ticdat.utils import DataFrame, numericish, ForeignKey, ForeignKeyMapping
import ticdat.utils as utils
from ticdat.testing.ticdattestutils import fail_to_debugger, flagged_as_run_alone, spacesSchema, firesException
from ticdat.testing.ticdattestutils im... | bsd-2-clause |
plotly/python-api | packages/python/plotly/plotly/graph_objs/_sankey.py | 1 | 44466 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Sankey(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "sankey"
_valid_props = {
"arrangement",
"customdata",
"customdatasrc",
"... | mit |
kasra-hosseini/obspyDMT | obspyDMT/utils/local_handler.py | 1 | 31984 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# -------------------------------------------------------------------
# Filename: local_handler.py
# Purpose: handling local processing/plotting in obspyDMT
# Author: Kasra Hosseini
# Email: kasra.hosseinizad@earth.ox.ac.uk
# License: GNU Lesser Gener... | gpl-3.0 |
amolkahat/pandas | pandas/tests/series/test_operators.py | 1 | 35199 | # coding=utf-8
# pylint: disable-msg=E1101,W0612
import pytest
from datetime import datetime, timedelta
import operator
from numpy import nan
import numpy as np
import pandas as pd
from pandas import (Index, Series, DataFrame, isna, bdate_range,
NaT, date_range, timedelta_range, Categorical)
fro... | bsd-3-clause |
mick-d/nipype | nipype/algorithms/rapidart.py | 3 | 32924 | # -*- coding: utf-8 -*-
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""
The rapidart module provides routines for artifact detection and region of
interest analysis.
These functions include:
* ArtifactDetect: performs artifact detection on functi... | bsd-3-clause |
utke1/numpy | numpy/core/fromnumeric.py | 1 | 98149 | """Module containing non-deprecated functions borrowed from Numeric.
"""
from __future__ import division, absolute_import, print_function
import types
import warnings
import numpy as np
from .. import VisibleDeprecationWarning
from . import multiarray as mu
from . import umath as um
from . import numerictypes as nt
... | bsd-3-clause |
Bismarrck/tensorflow | tensorflow/tools/compatibility/tf_upgrade_v2_test.py | 1 | 31065 | # Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
isovic/aligneval | src/plot_with_seabourne_v2.py | 1 | 37633 | #! /usr/bin/python
import os;
import sys;
try:
import numpy as np;
except Exception, e:
USE_MATPLOTLIB = False;
print e;
print 'Warning: NumPy not installed!';
exit(0);
USE_MATPLOTLIB = True;
try:
import matplotlib.pyplot as plt;
except Exception, e:
USE_MATPLOTLIB = False;
print e;
print 'Warning: Matplotl... | mit |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/tests/sparse/series/test_series.py | 1 | 57962 | from datetime import datetime
import operator
import numpy as np
from numpy import nan
import pytest
from pandas._libs.sparse import BlockIndex, IntIndex
from pandas.compat import PY36
from pandas.errors import PerformanceWarning
import pandas.util._test_decorators as td
import pandas as pd
from pandas import DataFr... | apache-2.0 |
gaborbernat/tox | tests/unit/config/test_config.py | 1 | 123254 | # coding=utf-8
import os
import re
import sys
from textwrap import dedent
import py
import pytest
from pluggy import PluginManager
from six import PY2
import tox
from tox.config import (
CommandParser,
DepOption,
PosargsOption,
SectionReader,
get_homedir,
get_version_info,
getcontextname,
... | mit |
ebuchman/theano-rnn | rnn_minibatch.py | 1 | 44781 | """ Vanilla RNN
Parallelizes scan over sequences by using mini-batches.
@author Graham Taylor
"""
import numpy as np
import theano
import theano.tensor as T
from sklearn.base import BaseEstimator
import logging
import time
import os
import datetime
import cPickle as pickle
import random
logger = logging.getLogger(__n... | bsd-3-clause |
kiwifb/numpy | numpy/linalg/linalg.py | 2 | 75847 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | bsd-3-clause |
sclamons/murraylab_tools | murraylab_tools/biotek/biotek.py | 1 | 65469 | # TODO:
# -- Move calibration data out of source code
# Have a string identifying the calibration data file, use that.
# Default to most recent calibration data.
# -- Add temperature records?
import sys
import collections
import pandas as pd
import numpy as np
import warnings
import scipy.interpolate
i... | mit |
ryfeus/lambda-packs | Sklearn_scipy_numpy/source/sklearn/ensemble/gradient_boosting.py | 2 | 70083 | """Gradient Boosted Regression Trees
This module contains methods for fitting gradient boosted regression trees for
both classification and regression.
The module structure is the following:
- The ``BaseGradientBoosting`` base class implements a common ``fit`` method
for all the estimators in the module. Regressio... | mit |
decvalts/cartopy | lib/cartopy/crs.py | 1 | 71237 | # (C) British Crown Copyright 2011 - 2018, Met Office
#
# This file is part of cartopy.
#
# cartopy is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option)... | gpl-3.0 |
byu-dml/metalearn | tests/test_metafeatures.py | 1 | 36863 | """ Contains unit tests for the Metafeatures class. """
import inspect
import json
import jsonschema
import os
import random
import time
import unittest
import pandas as pd
import numpy as np
from metalearn import Metafeatures, METAFEATURES_JSON_SCHEMA_PATH
import metalearn.metafeatures.constants as consts
from tests... | mit |
ChenglongChen/Kaggle_HomeDepot | Code/Igor&Kostia/homedepot_functions.py | 1 | 37953 | # -*- coding: utf-8 -*-
"""
Some functions are saved in this file.
Competition: HomeDepot Search Relevance
Author: Igor Buinyi
Team: Turing test
"""
import numpy as np
import pandas as pd
from sklearn.ensemble import RandomForestRegressor, BaggingRegressor, GradientBoostingRegressor
from nltk.stem.snowball import Sno... | mit |
rs2/pandas | pandas/core/dtypes/dtypes.py | 1 | 38040 | """
Define extension dtypes.
"""
import re
from typing import (
TYPE_CHECKING,
Any,
Dict,
List,
MutableMapping,
Optional,
Tuple,
Type,
Union,
cast,
)
import numpy as np
import pytz
from pandas._libs.interval import Interval
from pandas._libs.tslibs import NaT, Period, Timestam... | bsd-3-clause |
orlox/massive_bins_2015 | 2016_double_bh/scripts/plot_summary.py | 1 | 49472 | #!/usr/bin/env python
import numpy as np
from pylab import *
import matplotlib.pyplot as plt
from matplotlib import rc
rc('text', usetex=True)
import matplotlib.patches as patches
from scipy.interpolate import griddata
import math
import scipy
from matplotlib import ticker
import sys
import os
from mesa import *
import... | gpl-3.0 |
kevin-intel/scikit-learn | sklearn/ensemble/tests/test_gradient_boosting.py | 2 | 52384 | """
Testing for the gradient boosting module (sklearn.ensemble.gradient_boosting).
"""
import warnings
import numpy as np
from numpy.testing import assert_allclose
from scipy.sparse import csr_matrix
from scipy.sparse import csc_matrix
from scipy.sparse import coo_matrix
from scipy.special import expit
import pytest
... | bsd-3-clause |
iproduct/course-social-robotics | 11-dnn-keras/venv/Lib/site-packages/matplotlib/transforms.py | 1 | 96797 | """
Matplotlib includes a framework for arbitrary geometric
transformations that is used determine the final position of all
elements drawn on the canvas.
Transforms are composed into trees of `TransformNode` objects
whose actual value depends on their children. When the contents of
children change, their parents are... | gpl-2.0 |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/_streamtube.py | 1 | 99745 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Streamtube(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "streamtube"
_valid_props = {
"autocolorscale",
"cauto",
"cmax",
"cmi... | mit |
cbertinato/pandas | pandas/io/stata.py | 1 | 108486 | """
Module contains tools for processing Stata files into DataFrames
The StataReader below was originally written by Joe Presbrey as part of PyDTA.
It has been extended and improved by Skipper Seabold from the Statsmodels
project who also developed the StataWriter and was finally added to pandas in
a once again improv... | bsd-3-clause |
winklerand/pandas | pandas/tests/io/test_stata.py | 1 | 57015 | # -*- coding: utf-8 -*-
# pylint: disable=E1101
import datetime as dt
import os
import struct
import sys
import warnings
from datetime import datetime
from distutils.version import LooseVersion
import numpy as np
import pandas as pd
import pandas.util.testing as tm
import pytest
from pandas import compat
from pandas.... | bsd-3-clause |
wmvanvliet/mne-python | mne/viz/_brain/_brain.py | 1 | 135002 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Eric Larson <larson.eric.d@gmail.com>
# Oleh Kozynets <ok7mailbox@gmail.com>
# Guillaume Favelier <guillaume.favelier@gmail.com>
# jona-sassenhagen <jona.sassenhagen@gmail.com>
# Joan Massich <mailsik@gmail.com>
#... | bsd-3-clause |
AbhishekGahlot/cda | tabulate.py | 1 | 38942 | # -*- coding: utf-8 -*-
from __future__ import print_function
from __future__ import unicode_literals
from collections import namedtuple
from platform import python_version_tuple
import re
"""
Copyright (c) 2011-2013 Sergey Astanin
Permission is hereby granted, free of charge, to any person obtaining
a copy of this ... | mit |
rs2/pandas | pandas/io/json/_json.py | 1 | 39060 | from collections import abc
import functools
from io import BytesIO, StringIO
from itertools import islice
import os
from typing import IO, Any, Callable, List, Optional, Type
import numpy as np
import pandas._libs.json as json
from pandas._libs.tslibs import iNaT
from pandas._typing import CompressionOptions, JSONSe... | bsd-3-clause |
datapythonista/pandas | pandas/tests/frame/indexing/test_setitem.py | 1 | 36813 | from datetime import datetime
import numpy as np
import pytest
import pandas.util._test_decorators as td
from pandas.core.dtypes.base import _registry as ea_registry
from pandas.core.dtypes.common import (
is_categorical_dtype,
is_interval_dtype,
is_object_dtype,
)
from pandas.core.dtypes.dtypes import (... | bsd-3-clause |
ruaultadrien/canpy | canpy/point_defects.py | 1 | 66477 | # -*- coding: utf-8 -*-
"""
Created on Wed Jan 27 16:42:41 2016
@author: Adrien
"""
import numpy as np
import math
from canpy.useful import index_heading,time_to_snap
from mpl_toolkits.mplot3d import axes3d
from matplotlib import animation
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d.a... | gpl-3.0 |
pjryan126/solid-start-careers | store/api/zillow/venv/lib/python2.7/site-packages/pandas/tools/tests/test_merge.py | 1 | 122954 | # pylint: disable=E1103
import nose
from datetime import datetime
from numpy.random import randn
from numpy import nan
import numpy as np
import random
import pandas as pd
from pandas.compat import range, lrange, lzip, StringIO
from pandas import compat
from pandas.tseries.index import DatetimeIndex
from pandas.tool... | gpl-2.0 |
vtsuperdarn/davitpy | davitpy/pydarn/plotting/rti.py | 1 | 46858 | # -*- coding: utf-8 -*-
# Copyright (C) 2012 VT SuperDARN Lab
# Full license can be found in LICENSE.txt
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# ... | gpl-3.0 |
EducationalTestingService/rsmtool | tests/test_preprocessor.py | 1 | 62673 | import numpy as np
import pandas as pd
from nose.tools import assert_almost_equal, assert_equal, eq_, ok_, raises
from numpy.testing import assert_array_equal
from pandas.testing import assert_frame_equal
from rsmtool.preprocessor import FeaturePreprocessor, FeatureSpecsProcessor, FeatureSubsetProcessor
class TestFea... | apache-2.0 |
rs2/pandas | pandas/tests/arithmetic/test_timedelta64.py | 1 | 78590 | # Arithmetic tests for DataFrame/Series/Index/Array classes that should
# behave identically.
from datetime import datetime, timedelta
import numpy as np
import pytest
from pandas.errors import OutOfBoundsDatetime, PerformanceWarning
import pandas as pd
from pandas import (
DataFrame,
DatetimeIndex,
NaT,... | bsd-3-clause |
dsm054/pandas | pandas/core/sparse/frame.py | 2 | 37508 | """
Data structures for sparse float data. Life is made simpler by dealing only
with float64 data
"""
from __future__ import division
# pylint: disable=E1101,E1103,W0231,E0202
import warnings
from pandas.compat import lmap
from pandas import compat
import numpy as np
from pandas.core.dtypes.missing import isna, notna... | bsd-3-clause |
plotly/python-api | packages/python/plotly/_plotly_utils/basevalidators.py | 1 | 85982 | from __future__ import absolute_import
import base64
import numbers
import textwrap
import uuid
from importlib import import_module
import copy
import io
from copy import deepcopy
import re
import sys
from six import string_types
from _plotly_utils.optional_imports import get_module
# back-port of fullmatch from Py... | mit |
apache/airflow | airflow/providers/google/cloud/hooks/bigquery.py | 2 | 129183 | #
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not... | apache-2.0 |
openwfm/wrfxpy | src/vis/postprocessor.py | 1 | 52650 | #!/usr/bin/env python
from __future__ import absolute_import
from __future__ import print_function
from __future__ import unicode_literals
import matplotlib as mpl
from six.moves import range
from six.moves import zip
mpl.use('AGG')
import simplekml as kml
import numpy as np
import netCDF4 as nc4
from pyhdf.SD import ... | mit |
magic2du/contact_matrix | Contact_maps/mnist_psuedo_ipython_dl_ppi/code/DL_Stacked_Model_Mnist_Psuedo_05_17_2015.py | 2 | 39577 |
# coding: utf-8
# In[1]:
# this part imports libs and load data from csv file
import sys
sys.path.append('../../../libs/')
import csv
from dateutil import parser
from datetime import timedelta
from sklearn import svm
import numpy as np
#import pandas as pd
import pickle
from sklearn.cross_validation import train_tes... | gpl-2.0 |
seberg/numpy | numpy/lib/function_base.py | 1 | 162204 | import collections.abc
import functools
import re
import sys
import warnings
import numpy as np
import numpy.core.numeric as _nx
from numpy.core import transpose
from numpy.core.numeric import (
ones, zeros_like, arange, concatenate, array, asarray, asanyarray, empty,
ndarray, around, floor, ceil, take, dot, w... | bsd-3-clause |
jseabold/statsmodels | statsmodels/stats/descriptivestats.py | 1 | 30495 | from statsmodels.compat.pandas import Appender, is_numeric_dtype
from statsmodels.compat.python import lmap, lrange
from typing import Sequence, Union
import warnings
import numpy as np
import pandas as pd
from pandas.core.dtypes.common import is_categorical_dtype
from scipy import stats
from statsmodels.iolib.table... | bsd-3-clause |
costypetrisor/scikit-learn | sklearn/decomposition/dict_learning.py | 1 | 43704 | """ Dictionary learning
"""
from __future__ import print_function
# Author: Vlad Niculae, Gael Varoquaux, Alexandre Gramfort
# License: BSD 3 clause
import time
import sys
import itertools
from math import sqrt, ceil
import numpy as np
from scipy import linalg
from numpy.lib.stride_tricks import as_strided
from ..b... | bsd-3-clause |
jswoboda/GeoDataPython | GeoData/plotting.py | 1 | 38354 | # -*- coding: utf-8 -*-
"""
Created on Fri Jan 02 09:38:14 2015
@author: Anna Stuhlmacher
plotting
"""
from __future__ import division, absolute_import
import logging
import numpy as np
import scipy as sp
import scipy.interpolate as spinterp
import time
import datetime as dt
import matplotlib.pyplot as plt
from matp... | mit |
jseabold/statsmodels | statsmodels/genmod/tests/results/results_glm.py | 3 | 273613 | """
Results for test_glm.py.
Hard-coded from R or Stata. Note that some of the remaining discrepancy vs.
Stata may be because Stata uses ML by default unless you specifically ask for
IRLS.
"""
import os
import numpy as np
import pandas as pd
from statsmodels.api import add_constant
from statsmodels.genmod.tests.res... | bsd-3-clause |
duguyue100/spikefuel | scripts/create_figures.py | 1 | 37068 | """Create figures for visualization purposes.
Author: Yuhuang Hu
Email : duguyue100@gmail.com
"""
import os
from os.path import join
import h5py
import cPickle as pickle
import numpy as np
from moviepy.editor import ImageSequenceClip
import cv2
import matplotlib
import matplotlib.pylab as plt
from spikefuel import d... | mit |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/isosurface/_colorbar.py | 1 | 73319 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class ColorBar(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "isosurface"
_path_str = "isosurface.colorbar"
_valid_props = {
"bgcolor",
... | mit |
tseaver/gcloud-python | bigquery/tests/unit/test_client.py | 1 | 157139 | # Copyright 2015 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | apache-2.0 |
jreback/pandas | pandas/tests/scalar/period/test_period.py | 1 | 55158 | from datetime import date, datetime, timedelta
import numpy as np
import pytest
import pytz
from pandas._libs.tslibs import iNaT, period as libperiod
from pandas._libs.tslibs.ccalendar import DAYS, MONTHS
from pandas._libs.tslibs.np_datetime import OutOfBoundsDatetime
from pandas._libs.tslibs.parsing import DateParse... | bsd-3-clause |
roshantha9/AbstractManycoreSim | src/analyse_results/AnalyseResults_Exp_RemappingBasic_MultiSeed.py | 1 | 86086 | import sys, os, csv, pprint, math
from collections import OrderedDict
import numpy as np
import random
import shutil
import math
## uncomment when running under CLI only version ##
#import matplotlib
#matplotlib.use('Agg')
import matplotlib
from IPython.core.payload import PayloadManager
matplotlib.use('Qt4Agg')
i... | gpl-3.0 |
melqkiades/yelp | source/python/topicmodeling/hiddenfactortopics/main.py | 1 | 33444 | # from topicmodeling.hiddenfactortopics.topic_corpus import TopicCorpus
import codecs
import csv
import itertools
from scipy.stats import wilcoxon, ttest_ind
from sklearn import decomposition
import langdetect
import pandas
from scipy.io import mmread
from scipy.sparse import coo_matrix, random
from scipy.sparse.lina... | lgpl-2.1 |
xaibeing/cn-deep-learning | tutorials/sentiment-network/Sentiment_Classification_Projects.py | 1 | 58275 |
# coding: utf-8
# # Sentiment Classification & How To "Frame Problems" for a Neural Network
#
# by Andrew Trask
#
# - **Twitter**: @iamtrask
# - **Blog**: http://iamtrask.github.io
# ### What You Should Already Know
#
# - neural networks, forward and back-propagation
# - stochastic gradient descent
# - mean squar... | mit |
antoinearnoud/ipp-macro-series-parser | ipp_macro_series_parser/denombrements_fiscaux/agregats_ipp.py | 1 | 37061 | # -*- coding: utf-8 -*-
import collections
import numpy
import pandas
from py_expression_eval import Parser
from ipp_macro_series_parser.config import Config
from ipp_macro_series_parser.denombrements_fiscaux.denombrements_parsers import (
get_denombrements_fiscaux_data_frame)
from ipp_macro_series_parser.data... | gpl-3.0 |
Nikea/pyXPCS | pyxpcs/PYXPCS.py | 1 | 167822 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'form1_temp_Qt4_T7th.ui'
#
# Created: Fri May 10 10:14:58 2013
# by: PyQt4 UI code generator 4.10
#
# WARNING! All changes made in this file will be lost!
from PyQt4 import QtCore, QtGui
from mplwidget import *
fro... | bsd-3-clause |
lposti/pyfJmod | fJmodel/fJmodel.py | 1 | 53573 | #################################################
#
# fJmodel class
#
# Author: L. Posti (lorenzo.posti@gmail.com)
# Commits: 02/03/15 Class creation
#
##################################################
__author__ = 'lposti'
from os.path import isfile
from linecache import getline
from voronoi import voronoi_2d_b... | bsd-3-clause |
larsoner/mne-python | mne/tests/test_source_estimate.py | 4 | 73102 | # -*- coding: utf-8 -*-
#
# License: BSD (3-clause)
from copy import deepcopy
import os
import os.path as op
from shutil import copyfile
import re
import numpy as np
from numpy.testing import (assert_array_almost_equal, assert_array_equal,
assert_allclose, assert_equal, assert_array_less)
i... | bsd-3-clause |
adykstra/mne-python | mne/tests/test_epochs.py | 1 | 114361 | # -*- coding: utf-8 -*-
# Author: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
from copy import deepcopy
from distutils.version import LooseVersion
from functools import partial
import os.path as op
import pickle
import py... | bsd-3-clause |
ThomasHSmith/TCGA-Tools-GUI | TCGA_Tools_GUI.py | 1 | 32437 | import sys, os, webbrowser, bs4, requests
from PyQt4 import QtCore, QtGui, uic
from PyQt4.QtGui import *
import pandas as pd
from PyQt4.uic import loadUiType
from matplotlib.figure import Figure
from matplotlib.backends.backend_qt4agg import (
FigureCanvasQTAgg as FigureCanvas,
NavigationToolbar2QT as Navigatio... | mit |
hagabbar/pycbc_copy | pycbc/future.py | 1 | 76504 | # Copyright (C) 2012 Alex Nitz
#
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in t... | gpl-3.0 |
camallen/aggregation | engine/aggregation_api.py | 1 | 98708 | #!/usr/bin/env python
# from setuptools import setup, find_packages
import os
import tarfile
import yaml
import urllib2
import cookielib
import re
import json
import urllib
import datetime
import classification
import matplotlib.pyplot as plt
import matplotlib.cbook as cbook
import math
import sys
import agglomerative
... | apache-2.0 |
kundor/gpstools | plot.py | 1 | 30284 | from math import floor, ceil, pi
import os
from contextlib import suppress
import time
import numpy as np
import pandas as pd
from scipy.signal import savgol_filter
import matplotlib as mp
mp.use('Agg', warn=False) # non-interactive backend, allows importing without crashing X-less ipython
from matplotlib import pyplot... | gpl-3.0 |
CI-WATER/gsshapy | gsshapy/orm/cmt.py | 1 | 41262 | """
********************************************************************************
* Name: MappingTablesModel
* Author: Nathan Swain
* Created On: Mar 18, 2013
* Copyright: (c) Brigham Young University 2013
* License: BSD 2-Clause
********************************************************************************
"""
fr... | bsd-3-clause |
TomAugspurger/pandas | pandas/tests/io/test_sql.py | 1 | 100120 | """SQL io tests
The SQL tests are broken down in different classes:
- `PandasSQLTest`: base class with common methods for all test classes
- Tests for the public API (only tests with sqlite3)
- `_TestSQLApi` base class
- `TestSQLApi`: test the public API with sqlalchemy engine
- `TestSQLiteFallbackApi`: t... | bsd-3-clause |
rustychris/stompy | stompy/spatial/field.py | 1 | 155245 | from __future__ import division
from __future__ import print_function
# still tracking down the last few calls missing the np. prefix,
# leftover from 'from numpy import *'
import numpy as np
import glob,types
import copy
from numpy.random import random
from numpy import ma
from numpy.linalg import norm
import tem... | mit |
dp7-PU/QCLAS_public | src/qclasGUI.py | 1 | 30542 | """
Make a GUI for qclas. This program uses HAPI to generate absorption profiles.
The program comes in without HITRAN data files. User can use the program to
download lines they need.
GUI of the program is based on PyQt4.
Da Pan, v-alpha, started on 02/13/2016
"""
import hapi
import numpy as np
from Py... | mit |
teonlamont/mne-python | mne/surface.py | 4 | 49374 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis A. Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
from copy import deepcopy
from distutils.version import LooseVersion
from glob import glob
from functools imp... | bsd-3-clause |
nextgenusfs/funannotate | funannotate/compare.py | 1 | 59286 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
import os
import subprocess
import shutil
import argparse
import io
from datetime import datetime
from goatools import obo_parser
from Bio import SeqIO
from natsort import natsorted
import pandas as pd
import funannotate.library as lib
import funannotate.resour... | bsd-2-clause |
Shaswat27/scipy | scipy/optimize/_lsq/least_squares.py | 1 | 36627 | """Generic interface for least-square minimization."""
from warnings import warn
import numpy as np
from numpy.linalg import norm
from scipy.sparse import issparse, csr_matrix
from scipy.sparse.linalg import LinearOperator
from scipy.optimize import _minpack, OptimizeResult
from scipy.optimize._numdiff import approx... | bsd-3-clause |
reimandlab/ActiveDriverDB | website/imports/protein_data.py | 1 | 38764 | from collections import defaultdict, namedtuple
from pathlib import Path
from typing import Callable, Type
from warnings import warn
from pandas import read_table
from tqdm import tqdm
from database import db, create_key_model_dict
from database import get_or_create
from helpers.bioinf import aa_symbols
from helpers.p... | lgpl-2.1 |
sauloal/cnidaria | scripts/venv/lib/python2.7/site-packages/pandas/io/pytables.py | 1 | 154221 | """
High level interface to PyTables for reading and writing pandas data structures
to disk
"""
# pylint: disable-msg=E1101,W0613,W0603
from datetime import datetime, date
import time
import re
import copy
import itertools
import warnings
import os
import numpy as np
from pandas import (Series, TimeSeries, DataFrame,... | mit |
phoenixding/scdiff | scdiff/scdiff.py | 1 | 56144 | #!/usr/bin/env python
# author: Jun Ding
# Date: Feb. 10th, 2018
# import system modules
import pdb,sys,os,random
import numpy as np
np.seterr(divide='ignore', invalid='ignore')
import warnings
warnings.filterwarnings("ignore")
import math
import copy
import pickle
import argparse
import functools
# import Statistics... | mit |
oknuutti/visnav-py | visnav/algo/model.py | 1 | 57150 | import pickle
import sys
import math
from abc import ABC
from functools import lru_cache
from math import degrees as deg, radians as rad
import numpy as np
import quaternion # adds to numpy # noqa # pylint: disable=unused-import
from astropy.time import Time
from astropy import constants as const
from astropy import... | mit |
afrendeiro/genomeToolkit | genomeToolkit/tools.py | 1 | 47225 | #!/usr/bin/env python
def savePandas(filename, data):
"""
Save DataFrame or Series.
:param filename : Filename to use
:type filename : str
:param data: Pandas DataFrame or Series
:type data: pandas.DataFrame or pandas.Series
"""
import numpy as np
import cPickle as pickle
np.... | gpl-2.0 |
thatchristoph/RTLSDR-Scanner | src/main_window.py | 1 | 59116 | #
# rtlsdr_scan
#
# http://eartoearoak.com/software/rtlsdr-scanner
#
# Copyright 2012 - 2014 Al Brown
#
# A frequency scanning GUI for the OsmoSDR rtl-sdr library at
# http://sdr.osmocom.org/trac/wiki/rtl-sdr
#
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gene... | gpl-3.0 |
FCoulombeau/ConformalMapping | trans_with_warp.py | 1 | 36304 | # -*- coding: utf-8 -*-
"""Conformal mappings of the complex plane used to manipulate and transform
images and videos.
@author: François Coulombeau
@date : 2014-11
@version : 0.3
@change :
(0.3) Use of skimage.transform.warp to actually do the transformation.
"""
import matplotlib.pyplot as plt
import movie... | gpl-2.0 |
hulingfei/Shaka | bia-660/final/data_mining_reviews.py | 1 | 102467 | # -*- coding: utf-8 -*-
"""
Created on Sat Nov 07 06:06:16 2015
@author: Lingfei Hu
"""
import re
import HTMLParser
import numpy as np
from sklearn.feature_extraction.text import CountVectorizer
from sklearn.feature_extraction.text import TfidfTransformer
from sklearn.linear_model import SGDClassifier
from sklearn.sv... | apache-2.0 |
MaestroGraph/sparse-hyper | experiments/transformer.py | 1 | 56086 | from _context import sparse
from sparse import util
import torch
from torch import nn
from torch.autograd import Variable
import torch.nn.functional as F
import torch.distributions as dist
import numpy as np
from argparse import ArgumentParser
from torch.utils.tensorboard import SummaryWriter
import random, tqdm, s... | mit |
YzPaul3/h2o-3 | h2o-py/tests/pyunit_utils/utilsPY.py | 1 | 128719 | from __future__ import print_function
from future import standard_library
standard_library.install_aliases()
from builtins import range
from past.builtins import basestring
import sys, os
sys.path.insert(1, "../../")
import h2o
import imp
import random
import re
import subprocess
from subprocess import STDOUT,PIPE
from... | apache-2.0 |
WangWenjun559/Weiss | summary/sumy/sklearn/svm/classes.py | 1 | 37572 | import warnings
import numpy as np
from .base import _fit_liblinear, BaseSVC, BaseLibSVM
from ..base import BaseEstimator, RegressorMixin
from ..linear_model.base import LinearClassifierMixin, SparseCoefMixin, \
LinearModel
from ..feature_selection.from_model import _LearntSelectorMixin
from ..utils import check_X... | apache-2.0 |
garbersc/keras-galaxies | predict_convnet_keras_10cat_ConvTest.py | 1 | 47771 | import matplotlib.lines as mlines
import warnings
import theano.sandbox.cuda.basic_ops as sbcuda
import numpy as np
import load_data
import realtime_augmentation as ra
import time
import sys
import json
from datetime import timedelta
import os
import matplotlib.pyplot as plt
import skimage.io
from termcolor import colo... | bsd-3-clause |
hail-is/hail | hail/python/hail/experimental/ldscsim.py | 1 | 41324 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Simulation framework for testing LDSC
Models for SNP effects:
- Infinitesimal (can simulate n correlated traits)
- Spike & slab (can simulate up to 2 correlated traits)
- Annotation-informed
Features:
- Field aggregation tools for annotation-informed m... | mit |
pniessen/Segment_Helper | web/PCA_tester.py | 1 | 124097 | #!/usr/bin/env python
# coding: utf-8
# Rosetta Consulting customer segmentation pipeline
# 1.20.2016
# Peter Niessen, peter.niessen@rosetta.com
'''
Segment Helper: a customer segmentation toolkit
'''
import numpy as np
from sklearn.decomposition import PCA
import time
import flask
import pandas as pd
import os
fr... | mit |
chunweiyuan/xarray | xarray/tests/test_plot.py | 1 | 70840 | import inspect
from datetime import datetime
import numpy as np
import pandas as pd
import pytest
from numpy.testing import assert_array_equal
import xarray as xr
import xarray.plot as xplt
from xarray import DataArray
from xarray.coding.times import _import_cftime
from xarray.plot.plot import _infer_interval_breaks
... | apache-2.0 |
cmeeren/eiscatscanplot | eiscatscanplot.py | 1 | 65148 | # -*- coding: utf-8 -*-
"""
Module to plot EISCAT radar scans. Scan detection based on azimuth (primary) or
elevation (if stationary in azimuth)
@author: Christer van der Meeren
Initially tested at the ESR 2014-11-26
"""
from __future__ import print_function
import os
import shutil
from os.path import isfile, join
... | mit |
GlobalEcologyLab/SARDM | modified-lib-files/matplotlib/backends/backend_tkagg.py | 1 | 36111 | # Todd Miller jmiller@stsci.edu
from __future__ import division, print_function
import os, sys, math
import os.path
import Tkinter as Tk, FileDialog
# Paint image to Tk photo blitter extension
import matplotlib.backends.tkagg as tkagg
from matplotlib.backends.backend_agg import FigureCanvasAgg
import matplotlib.... | gpl-3.0 |
BayesFlare/bayesflare | bayesflare/stats/bayes.py | 1 | 54001 | """
"""
from __future__ import print_function
from math import log
import numpy as np
from copy import copy, deepcopy
from ..noise import estimate_noise_ps, estimate_noise_tv, highpass_filter_lightcurve, savitzky_golay
from ..models import *
from .general import *
#from .thresholding import Thresholder
from math imp... | gpl-2.0 |
jonparrott/google-cloud-python | bigquery/tests/unit/test_table.py | 2 | 65767 | # Copyright 2015 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | apache-2.0 |
RNAEDITINGPLUS/main | node/utrOntology.py | 1 | 33627 | #! /usr/bin/env python
# Copyright (C) 2016 Li Yao <yaoli95@outlook.com>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
#... | apache-2.0 |
orlox/binary_tools | binary/tests/test_kicks.py | 1 | 32399 | #!/usr/bin/env python
from binary_tools.constants import *
from binary_tools.binary import kicks
from binary_tools.binary.orbits import *
import matplotlib.pyplot as plt
from scipy.stats import maxwell
from scipy.integrate import quad
import random as rd
import numpy as np
__author__ = "Kaliroe Pappas"
__credits__ = [... | gpl-3.0 |
vmonaco/pohmm | pohmm/pohmm.py | 1 | 55722 | import numpy as np
import scipy.stats as stats
from collections import defaultdict, Counter, OrderedDict
from . import _hmmc
from .utils import *
NEGINF = -np.inf
# Label for the missing/unknown p-states
UNKNOWN_PSTATE = 'UNKNOWN'
# There are many places where a 0 probability must be avoided. Assume a very small pro... | bsd-3-clause |
gpfinder/gpfinder | GPFinder/FeatureObject.py | 1 | 144044 | from xml.dom import minidom, Node
from operator import attrgetter
from os.path import splitext
import os
import re
import glob
import time
import numpy
import math
import array
import base64
import struct
import bisect
from copy import deepcopy
from gaussian_kde import *
from pyFindMassMatch import *
from MassScoreObj... | gpl-3.0 |
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