repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
grlee77/scipy | scipy/spatial/kdtree.py | 1 | 33793 | # Copyright Anne M. Archibald 2008
# Released under the scipy license
import numpy as np
import warnings
from .ckdtree import cKDTree, cKDTreeNode
__all__ = ['minkowski_distance_p', 'minkowski_distance',
'distance_matrix',
'Rectangle', 'KDTree']
def minkowski_distance_p(x, y, p=2):
"""Compu... | bsd-3-clause |
ubenu/Blits | src/blitspak/simulate_dialog.py | 1 | 40036 | '''
Created on 1 Dec 2017
@author: SchilsM
'''
#import sys
import numpy as np
import pandas as pd
import copy as cp
from statsmodels.stats.stattools import durbin_watson
from PyQt5 import QtCore as qt
from PyQt5 import QtGui as gui
from PyQt5 import QtWidgets as widgets
from blitspak.blits_mpl import MplCanvas, Navi... | gpl-3.0 |
wmvanvliet/mne-python | doc/conf.py | 1 | 33453 | # -*- coding: utf-8 -*-
#
# Configuration file for the Sphinx documentation builder.
#
# This file only contains a selection of the most common options. For a full
# list see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html
import gc
import os
import sys
import time
import warnings
fr... | bsd-3-clause |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_load2-new10fold_11_05_2014_server.py | 2 | 41825 |
# coding: utf-8
# In[3]:
import sys, os
sys.path.append('../../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import numpy as np
import csv
from dateutil import parser
from datetime import timedelta
from sklearn import svm
import numpy ... | gpl-2.0 |
msincenselee/vnpy | vnpy/app/cta_crypto/back_testing.py | 1 | 98407 | # encoding: UTF-8
'''
本文件中包含的是CTA模块的组合回测引擎，回测引擎的API和CTA引擎一致，
可以使用和实盘相同的代码进行回测。
华富资产 李来佳
'''
from __future__ import division
import sys
import os
import importlib
import csv
import copy
import pandas as pd
import traceback
import numpy as np
import logging
import socket
import zlib
import pickle
from bson import binar... | mit |
vortex-ape/scikit-learn | sklearn/model_selection/_validation.py | 2 | 59947 | """
The :mod:`sklearn.model_selection._validation` module includes classes and
functions to validate the model.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Gael Varoquaux <gael.varoquaux@normalesup.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Raghav RV <rvraghav93@gma... | bsd-3-clause |
compmech/meshless | theory/espim/2D/plate/FSDT/transverse_shear_edge_based/espim_example.py | 1 | 167214 | """ES-PIM
- prevents non-zero energy spurious modes for vibration / buckling analysis as
NS-PIM
- compared to SFEM using TRIA3, this approach is very similar, but much easily
extented to n-sided elements, since the integration is performed edge-wise
- results more precise than FEM using QUAD4 elements
"""
import ... | bsd-2-clause |
PanDAWMS/panda-jedi | pandajedi/jedidog/AtlasQueueFillerWatchDog.py | 1 | 32083 | import os
import sys
import copy
import re
import json
import socket
import datetime
import traceback
from six import iteritems
from .WatchDogBase import WatchDogBase
from pandajedi.jediconfig import jedi_config
from pandajedi.jedicore.MsgWrapper import MsgWrapper
from pandajedi.jedicore.ThreadUtils import ListWithLo... | apache-2.0 |
simpeg/discretize | discretize/base/base_tensor_mesh.py | 1 | 47688 | """
Base class for tensor-product style meshes
"""
import numpy as np
import scipy.sparse as sp
from discretize.base.base_mesh import BaseMesh
from discretize.utils import (
is_scalar,
as_array_n_by_dim,
unpack_widths,
mkvc,
ndgrid,
spzeros,
sdiag,
sdinv,
TensorType,
interpolat... | mit |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/pandas/core/ops.py | 1 | 38973 | """
Arithmetic operations for PandasObjects
This is not a public API.
"""
# necessary to enforce truediv in Python 2.X
from __future__ import division
import operator
import numpy as np
import pandas as pd
from pandas import compat, lib, tslib
import pandas.index as _index
from pandas.util.decorators import Appender
i... | gpl-3.0 |
cschlosberg/me-class | methylation_interpolation.py | 1 | 91637 | ### Custom container Class definitions
class Window:
def __init__(self,low,high,bins,bp_window_size=None):
self.low = low
self.high = high
self.len = self.high-self.low
self.bins = bins
# print "Window Bins: ",self.bins
self.x = list()
self.x_raw_meth = list()... | gpl-3.0 |
rkmaddox/mne-python | mne/utils/docs.py | 1 | 112764 | # -*- coding: utf-8 -*-
"""The documentation functions."""
# Authors: Eric Larson <larson.eric.d@gmail.com>
#
# License: BSD (3-clause)
from copy import deepcopy
import inspect
import os
import os.path as op
import sys
import warnings
import webbrowser
from ..defaults import HEAD_SIZE_DEFAULT
from ..externals.doccer ... | bsd-3-clause |
aerospaceresearch/orbitdeterminator | orbitdeterminator/optimization/with_mcmc.py | 1 | 44667 | import numpy as np
import emcee
from astropy.time import Time
from datetime import datetime, timedelta
from astropy.coordinates import Longitude, SkyCoord
from astropy import units as uts
from astropy.coordinates import AltAz
from astropy.coordinates import EarthLocation
import astropy.units as u
from skyfield.api im... | mit |
kdebrab/pandas | pandas/core/indexes/interval.py | 1 | 40793 | """ define the IntervalIndex """
import textwrap
import warnings
import numpy as np
from pandas.compat import add_metaclass
from pandas.core.dtypes.missing import isna
from pandas.core.dtypes.cast import find_common_type, maybe_downcast_to_dtype
from pandas.core.dtypes.common import (
ensure_platform_int,
is_... | bsd-3-clause |
johnowhitaker/bobibabber | sklearn/preprocessing/data.py | 1 | 38432 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# License: BSD 3 clause
import numbers
import warnings
import itertools
import numpy as np
from scipy... | mit |
cbertinato/pandas | pandas/io/sql.py | 1 | 60126 | """
Collection of query wrappers / abstractions to both facilitate data
retrieval and to reduce dependency on DB-specific API.
"""
from contextlib import contextmanager
from datetime import date, datetime, time
from functools import partial
import re
import warnings
import numpy as np
import pandas._libs.lib as lib
... | bsd-3-clause |
gfyoung/pandas | pandas/tests/io/parser/test_parse_dates.py | 1 | 48096 | """
Tests date parsing functionality for all of the
parsers defined in parsers.py
"""
from datetime import date, datetime
from io import StringIO
from dateutil.parser import parse as du_parse
from hypothesis import given, settings, strategies as st
import numpy as np
import pytest
import pytz
from pandas._libs.tslib... | bsd-3-clause |
ahaldane/numpy | numpy/core/tests/test_multiarray.py | 1 | 314281 | from __future__ import division, absolute_import, print_function
try:
# Accessing collections abstract classes from collections
# has been deprecated since Python 3.3
import collections.abc as collections_abc
except ImportError:
import collections as collections_abc
import tempfile
import sys
import sh... | bsd-3-clause |
nmartensen/pandas | pandas/core/indexes/multi.py | 1 | 94933 |
# pylint: disable=E1101,E1103,W0232
import datetime
import warnings
from functools import partial
from sys import getsizeof
import numpy as np
from pandas._libs import index as libindex, lib, Timestamp
from pandas.compat import range, zip, lrange, lzip, map
from pandas.compat.numpy import function as nv
from pandas ... | bsd-3-clause |
aflaxman/scikit-learn | sklearn/tests/test_pipeline.py | 6 | 33631 | """
Test the pipeline module.
"""
from tempfile import mkdtemp
import shutil
import time
import numpy as np
from scipy import sparse
from sklearn.externals.six.moves import zip
from sklearn.utils.testing import assert_raises
from sklearn.utils.testing import assert_raises_regex
from sklearn.utils.testing import asse... | bsd-3-clause |
icexelloss/spark | python/pyspark/serializers.py | 1 | 31141 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
jseabold/statsmodels | statsmodels/tsa/regime_switching/markov_switching.py | 5 | 83115 | """
Markov switching models
Author: Chad Fulton
License: BSD-3
"""
import warnings
import numpy as np
import pandas as pd
from scipy.special import logsumexp
from statsmodels.tools.tools import Bunch
from statsmodels.tools.numdiff import approx_fprime_cs, approx_hess_cs
from statsmodels.tools.decorators import cache... | bsd-3-clause |
maciejkula/scipy | scipy/optimize/nonlin.py | 1 | 46481 | r"""
=================
Nonlinear solvers
=================
.. currentmodule:: scipy.optimize
This is a collection of general-purpose nonlinear multidimensional
solvers. These solvers find *x* for which *F(x) = 0*. Both *x*
and *F* can be multidimensional.
Routines
========
Large-scale nonlinear solvers:
.. autos... | bsd-3-clause |
proetman/checkit | speedcam/home_lib.py | 1 | 40656 | """
Home Lib.py
Generic Library
"""
import logging
import collections
import csv
import mmap
import os
import socket
import platform
import tabulate
import difflib
import re
import sys
import time
from datetime import datetime
import pyodbc
import pandas as pd
import numpy as np
# import racq_conn_lib as rqconnlib
#... | gpl-2.0 |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/scattercarpet/marker/_colorbar.py | 1 | 73686 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class ColorBar(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "scattercarpet.marker"
_path_str = "scattercarpet.marker.colorbar"
_valid_props = {
... | mit |
cython-testbed/pandas | pandas/tests/series/test_analytics.py | 1 | 81415 | # coding=utf-8
# pylint: disable-msg=E1101,W0612
from itertools import product
from distutils.version import LooseVersion
import operator
import pytest
from numpy import nan
import numpy as np
import pandas as pd
from pandas import (Series, Categorical, DataFrame, isna, notna,
bdate_range, date_r... | bsd-3-clause |
georgebv/coastlib | coastlib/stats/distributions.py | 1 | 35708 | # coastlib, a coastal engineering Python library
# Copyright (C), 2019 Georgii Bocharov
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) a... | gpl-3.0 |
LanguageMachines/quoll | quoll/classification_pipeline/functions/classifier.py | 1 | 33993 |
from sklearn import preprocessing
from sklearn import svm, naive_bayes, tree
from sklearn.linear_model import Perceptron, LogisticRegression, LinearRegression
from sklearn.neighbors import KNeighborsClassifier
from xgboost import XGBClassifier
from sklearn.model_selection import GridSearchCV, RandomizedSearchCV
from s... | gpl-3.0 |
cdd1969/pygwa | lib/functions/plot_pandas.py | 1 | 32919 | ''' MODULE CONTAINING PLOTTING FUNCTIONS...
'''
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
import pandas as pd
import math
def r_squared(actual, ideal):
''' Calculate coefficient of determination (R2)
actual - 1D-array of y-values of measured points
ideal ... | gpl-2.0 |
Featuretools/featuretools | featuretools/computational_backends/calculate_feature_matrix.py | 1 | 30761 | import logging
import math
import os
import shutil
import time
import warnings
from datetime import datetime
import cloudpickle
import numpy as np
import pandas as pd
from featuretools.computational_backends.feature_set import FeatureSet
from featuretools.computational_backends.feature_set_calculator import (
Fea... | bsd-3-clause |
badbytes/pymeg | gui/gtk/pymeg.py | 1 | 59177 | #!/usr/bin/python2
# pymeg.py
#
# Copyright 2010 dan collins <danc@badbytes.net>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License,... | gpl-3.0 |
grlee77/numpy | numpy/linalg/linalg.py | 1 | 89490 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | bsd-3-clause |
theavey/ParaTemp | paratemp/energy_histo.py | 1 | 30028 | #! /usr/bin/env python
########################################################################
# #
# This script was written by Thomas Heavey in 2016-17. #
# theavey@bu.edu thomasjheavey@gmail.com #
# ... | apache-2.0 |
ljwolf/pysal | pysal/esda/moran.py | 1 | 56931 | """
Moran's I Spatial Autocorrelation Statistics
"""
__author__ = "Sergio J. Rey <srey@asu.edu>, \
Dani Arribas-Bel <daniel.arribas.bel@gmail.com>"
from ..weights.spatial_lag import lag_spatial as slag
from .smoothing import assuncao_rate
from .tabular import _univariate_handler, _bivariate_handler
import scip... | bsd-3-clause |
jakobrunge/tigramite | tigramite/models.py | 1 | 57215 | """Tigramite causal discovery for time series."""
# Author: Jakob Runge <jakob@jakob-runge.com>
#
# License: GNU General Public License v3.0
from __future__ import print_function
from copy import deepcopy
import numpy as np
from tigramite.data_processing import DataFrame
from tigramite.pcmci import PCMCI
# try:
im... | gpl-3.0 |
dricciardelli/vae2vec | def_def_single.py | 1 | 37251 | ''' Significant lifting from https://jmetzen.github.io/2015-11-27/vae.html '''
import time
import numpy as np
import tensorflow as tf
from tensorflow.python.ops import rnn
import random
import matplotlib.pyplot as plt
import re, string
from sklearn.feature_extraction.text import CountVectorizer
from collections impo... | mit |
ay-lab/fithic | fithic/fithic.py | 1 | 59448 | #!/usr/bin/env python
'''
Created on Jan 29, 2014 by Ferhat Ay
Modified by Arya Kaul 2017-Present
'''
import sys
import math
import time
import numpy as np
from scipy import *
from scipy.interpolate import Rbf, UnivariateSpline
from scipy import optimize
import scipy.special as scsp
import bisect
import gzip
from sci... | mit |
Ledoux/ShareYourSystem | Pythonlogy/ShareYourSystem/Standards/Viewers/Pyploter/__init__.py | 2 | 51979 | # -*- coding: utf-8 -*-
"""
<DefineSource>
@Date : Fri Nov 14 13:20:38 2014 \n
@Author : Erwan Ledoux \n\n
</DefineSource>
A Pyploter
"""
#<DefineAugmentation>
import ShareYourSystem as SYS
BaseModuleStr="ShareYourSystem.Standards.Viewers.Viewer"
DecorationModuleStr="ShareYourSystem.Standards.Classors.Classer"
SY... | mit |
arthurfait/HMM-3 | Gen_Synthetic_Data/GMMHMM/algo_HMM.py | 1 | 86967 | '''
This file contains the main algorithms
used to train the hmms, namely forward,backward,viterbi and baum-welch
TODO: tests
'''
try:
import psyco
psyco.full()
except:
pass
# Usually we use nicknames for the states and links
#
# B = {Begin}, E= {all emitting states}, N={all null States}
# S ={ all states} = B U E... | gpl-3.0 |
chrsrds/scikit-learn | sklearn/linear_model/tests/test_sgd.py | 1 | 58198 | from distutils.version import LooseVersion
import pickle
import pytest
import numpy as np
import scipy.sparse as sp
import joblib
from sklearn.utils.testing import assert_array_equal
from sklearn.utils.testing import assert_almost_equal
from sklearn.utils.testing import assert_array_almost_equal
from sklearn.utils.te... | bsd-3-clause |
ToFuProject/tofu | tofu/geom/_core.py | 1 | 285354 | """
This module is the geometrical part of the ToFu general package
It includes all functions and object classes necessary for tomography
on Tokamaks
"""
# Built-in
import os
import warnings
import copy
import inspect
# Common
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
# ToFu-specifi... | mit |
gbrammer/grizli | grizli/model.py | 1 | 191551 | """
Model grism spectra in individual FLTs
"""
import os
from collections import OrderedDict
import copy
import numpy as np
import scipy.ndimage as nd
import matplotlib.pyplot as plt
import astropy.io.fits as pyfits
from astropy.table import Table
import astropy.wcs as pywcs
import astropy.units as u
#import stwcs
... | mit |
JPalmerio/GRB_population_code | grbpop/GRB_population.py | 1 | 38776 | # General python imports
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
import logging
import yaml
import pickle
from pathlib import Path
import scipy.integrate as integrate
# GRB population specific imports
import stats as st
import physics as ph
import functional_forms as ff
import f90_functio... | gpl-3.0 |
ubuntuslave/omnistereo_sensor_design | omnistereo/camera_models.py | 1 | 118858 | # -*- coding: utf-8 -*-
# camera_models.py
# Copyright (c) 20012-2016, Carlos Jaramillo
# Produced at the Laboratory for Robotics and Intelligent Systems of the City College of New York
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided ... | gpl-3.0 |
duncanmmacleod/gwpy | gwpy/timeseries/core.py | 1 | 58948 | # -*- coding: utf-8 -*-
# Copyright (C) Duncan Macleod (2014-2020)
#
# This file is part of GWpy.
#
# GWpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option)... | gpl-3.0 |
jaekor91/xd-elg-scripts | xd_elg_utils.py | 1 | 81633 | import numpy as np
import numpy.lib.recfunctions as rec
from astropy.io import ascii, fits
from astropy.wcs import WCS
from astropy.coordinates import SkyCoord
from astropy import units as u
from os import listdir
from os.path import isfile, join
import scipy.stats as stats
import scipy.optimize as opt
import matplo... | gpl-3.0 |
alexsavio/scikit-learn | sklearn/model_selection/tests/test_split.py | 1 | 42493 | """Test the split module"""
from __future__ import division
import warnings
import numpy as np
from scipy.sparse import coo_matrix, csc_matrix, csr_matrix
from scipy import stats
from scipy.misc import comb
from itertools import combinations
from sklearn.utils.fixes import combinations_with_replacement
from sklearn.u... | bsd-3-clause |
jamestwebber/scipy | scipy/optimize/minpack.py | 1 | 34279 | from __future__ import division, print_function, absolute_import
import threading
import warnings
from . import _minpack
import numpy as np
from numpy import (atleast_1d, dot, take, triu, shape, eye,
transpose, zeros, prod, greater, array,
all, where, isscalar, asarray, inf, abs,... | bsd-3-clause |
cython-testbed/pandas | pandas/io/excel.py | 1 | 62232 | """
Module parse to/from Excel
"""
# ---------------------------------------------------------------------
# ExcelFile class
from datetime import datetime, date, time, MINYEAR, timedelta
import os
import abc
import warnings
from textwrap import fill
from io import UnsupportedOperation
from distutils.version import Lo... | bsd-3-clause |
jmschrei/PyPore | PyPore/DataTypes.py | 1 | 43672 | #!/usr/bin/env python
# Contact: Jacob Schreiber
# jacobtribe@soe.ucsc.com
# DataTypes.py
'''
DataTypes.py contains several classes meant to hold and organize common types of nanopore
experimental data. The most common usage involves creating a file from a .abf file, and then
parsing it to get events, and th... | mit |
aarchiba/scipy | scipy/optimize/minpack.py | 1 | 33994 | from __future__ import division, print_function, absolute_import
import threading
import warnings
from . import _minpack
import numpy as np
from numpy import (atleast_1d, dot, take, triu, shape, eye,
transpose, zeros, prod, greater, array,
all, where, isscalar, asarray, inf, abs,... | bsd-3-clause |
CospanDesign/python | opencv/opencv_demo.py | 1 | 48590 | #! /usr/bin/env python
# Copyright (c) 2015 Dave McCoy (dave.mccoy@cospandesign.com)
#
# NAME is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# any later version.
#
# NAME ... | mit |
TomAugspurger/pandas | pandas/tests/scalar/period/test_asfreq.py | 1 | 36358 | import pytest
from pandas._libs.tslibs.frequencies import INVALID_FREQ_ERR_MSG, _period_code_map
from pandas.errors import OutOfBoundsDatetime
from pandas import Period, Timestamp, offsets
class TestFreqConversion:
"""Test frequency conversion of date objects"""
@pytest.mark.parametrize("freq", ["A", "Q", ... | bsd-3-clause |
anntzer/seaborn | seaborn/tests/test_categorical.py | 1 | 105379 | import numpy as np
import pandas as pd
from scipy import stats, spatial
import matplotlib as mpl
import matplotlib.pyplot as plt
from matplotlib.colors import rgb2hex
from distutils.version import LooseVersion
import pytest
import nose.tools as nt
import numpy.testing as npt
from .. import categorical as cat
from .. ... | bsd-3-clause |
Tong-Chen/scikit-learn | sklearn/metrics/tests/test_metrics.py | 1 | 96539 | from __future__ import division, print_function
import numpy as np
from functools import partial
from itertools import product
import warnings
from sklearn import datasets
from sklearn import svm
from sklearn.preprocessing import LabelBinarizer
from sklearn.datasets import make_multilabel_classification
from sklearn... | bsd-3-clause |
geopandas/geopandas | geopandas/tests/test_geodataframe.py | 1 | 36305 | import json
import os
import shutil
import tempfile
from distutils.version import LooseVersion
import numpy as np
import pandas as pd
import pyproj
from pyproj import CRS
from pyproj.exceptions import CRSError
from shapely.geometry import Point
import geopandas
from geopandas import GeoDataFrame, GeoSeries, read_fil... | bsd-3-clause |
MartinPyka/Pam-Utils | pamutils/network.py | 1 | 34485 | # -*- coding: utf-8 -*-
"""
Created on Wed Feb 25 20:54:14 2015
@author: ubuntu
"""
import matplotlib.pyplot as mp
import matplotlib
from nest import *
import nest.voltage_trace
import nest.raster_plot
import io
import StringIO
import csv
import numpy as np
import pickle
import zipfile
import pamutils.pam2nest as... | gpl-2.0 |
cheral/orange3 | Orange/widgets/visualize/owvenndiagram.py | 1 | 53996 | """
Venn Diagram Widget
-------------------
"""
import math
import unicodedata
from collections import namedtuple, defaultdict, OrderedDict, Counter
from itertools import count
from functools import reduce
from xml.sax.saxutils import escape
import numpy
from AnyQt.QtWidgets import (
QComboBox, QGraphicsScene, ... | bsd-2-clause |
BoldingBruggeman/gotm | gui.py/xmlplot/gui_qt4.py | 1 | 76307 | # Import modules from standard Python (>= 2.4) library
import datetime, os.path, sys
# Import third-party modules
from xmlstore.qt_compat import QtGui,QtCore
import numpy
import matplotlib.figure
from matplotlib.backends.backend_agg import FigureCanvasAgg
import matplotlib.lines
# Import our own custom modules
import... | gpl-2.0 |
compmech/meshless | scratch/espim_example.py | 1 | 153233 | """ES-PIM
- prevents non-zero energy spurious modes for vibration / buckling analysis as
NS-PIM
- compared to SFEM using TRIA3, this approach is very similar, but much easily
extented to n-sided elements, since the integration is performed edge-wise
- results more precise than FEM using QUAD4 elements
"""
import ... | bsd-2-clause |
mozafari/verdict | verdict/core/querying2.py | 1 | 48170 | """This module contains the query processing logic.
"""
import concurrent.futures
import copy
import json
import math
import pandas as pd
import pdb
import pprint
import queue
import threading
from typing import Callable, List
from ..interface import *
from ..common.logging import *
from ..common.tools import *
cla... | apache-2.0 |
rajegannathan/grasp-lift-eeg-cat-dog-solution-updated | python-packages/mne-python-0.10/mne/decoding/time_gen.py | 1 | 51427 | # Authors: Jean-Remi King <jeanremi.king@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Clement Moutard <clement.moutard@gmail.com>
#
# License: BSD (3-clause)
import numpy as np
import copy
from ..io.pick import pick_... | bsd-3-clause |
gdrouart/MrMoose | graphics.py | 1 | 36874 | """
MrMoose: A multi-wavelength, multi-resolution, multi-sources fitting code.
Allow to simultaneously fit multiple models in order to interpret the spectral
energy distribution of an astrophysical source from simple to more complex case,
making use of a bayesian framework.
Copyright (C) 2017 Guillaume Drouart, There... | gpl-3.0 |
pywr/pywr | tests/test_recorders.py | 1 | 83682 | # -*- coding: utf-8 -*-
"""
Test the Recorder object API
"""
import pywr.core
from pywr.core import Model, Input, Output, Scenario, AggregatedNode
import numpy as np
import pandas
import pytest
import tables
import json
from numpy.testing import assert_allclose, assert_equal
from fixtures import simple_linear_model, s... | gpl-3.0 |
oscarlazoarjona/quantum_memories | quantum_memories/hyperfine_orca.py | 1 | 45862 | # -*- coding: utf-8 -*-
# ***********************************************************************
# Copyright (C) 2016 - 2017 Oscar Gerardo Lazo Arjona *
# 2017 Benjamin Brecht *
# <oscar.lazoarjona@physics.ox.ac.uk> *
... | gpl-3.0 |
zak-k/cartopy | lib/cartopy/mpl/geoaxes.py | 1 | 78645 | # (C) British Crown Copyright 2011 - 2017, Met Office
#
# This file is part of cartopy.
#
# cartopy is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option)... | lgpl-3.0 |
Transkribus/TranskribusDU | TranskribusDU/gcn/tests/UT_gcn.py | 1 | 35703 | # -*- coding: utf-8 -*-
import pdb
import random
__author__ = 'sclincha'
import operator
import sys,os
sys.path.append('../..')
import numpy as np
import unittest
import pickle
import tensorflow as tf
from tensorflow.python.client import timeline
import scipy.sparse as sp
try: #to ease the use without proper Pytho... | bsd-3-clause |
nisse3000/pymatgen | pymatgen/electronic_structure/plotter.py | 1 | 183163 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals, print_function
import logging
import math
import itertools
import warnings
from collections import OrderedDict
import six
import numpy as np
from monty.json ... | mit |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/core/internals/blocks.py | 1 | 111710 | from datetime import date, datetime, timedelta
import functools
import inspect
import re
from typing import Any, List
import warnings
import numpy as np
from pandas._libs import NaT, lib, tslib, tslibs
import pandas._libs.internals as libinternals
from pandas._libs.tslibs import Timedelta, conversion
from pandas._lib... | apache-2.0 |
dutch-rob/compare-formulas-in-excel-files | xlwings_rb/main.py | 1 | 37860 | """
xlwings - Make Excel fly with Python!
Homepage and documentation: http://xlwings.org
See also: http://zoomeranalytics.com
Copyright (C) 2014, Zoomer Analytics LLC.
All rights reserved.
License: BSD 3-clause (see LICENSE.txt for details)
"""
import sys
import numbers
from . import xlplatform, string_types, time_t... | gpl-2.0 |
spennihana/h2o-3 | h2o-py/h2o/grid/grid_search.py | 1 | 35730 | # -*- encoding: utf-8 -*-
from __future__ import division, print_function, absolute_import, unicode_literals
import itertools
import h2o
from h2o.job import H2OJob
from h2o.frame import H2OFrame
from h2o.exceptions import H2OValueError
from h2o.estimators.estimator_base import H2OEstimator
from h2o.two_dim_table impo... | apache-2.0 |
lidavidm/mathics-heroku | venv/lib/python2.7/site-packages/sympy/geometry/ellipse.py | 1 | 36305 | """Elliptical geometrical entities.
Contains
* Ellipse
* Circle
"""
from sympy.core import S, C, sympify, pi, Dummy
from sympy.core.logic import fuzzy_bool
from sympy.core.numbers import oo
from sympy.simplify import simplify, trigsimp
from sympy.functions.elementary.miscellaneous import sqrt, Max, Min
from sympy.fu... | gpl-3.0 |
amcw7777/python-exercises | cs177/project3/tabulate.py | 1 | 30185 | # -*- coding: utf-8 -*-
"""Pretty-print tabular data."""
from __future__ import print_function
from __future__ import unicode_literals
from collections import namedtuple
from platform import python_version_tuple
import re
if python_version_tuple()[0] < "3":
from itertools import izip_longest
from functools ... | apache-2.0 |
Delosari/dazer | bin/lib/ssp_functions/ssp_synthesis_tools_v0.py | 1 | 37364 | from errno import ENOENT
from os import remove, getcwd
from sys import argv, exit
from collections import OrderedDict
from pandas import DataFrame, read_csv
from astropy.io.fits impo... | mit |
jiaxunsongucb/mini-library | code/library_system.py | 1 | 49632 | # -*- coding: utf-8 -*-
import re
from collections import deque
from datetime import datetime
import getpass # 输入密码
import numpy as np
import pandas as pd
import sqlite3 as sql
from spider import *
import logging
import sys
import traceback
import os
from shutil import rmtree, copyfile
import platform
f... | mit |
3324fr/spinalcordtoolbox | dev/old/sct_straighten_spinalcord__testing.py | 1 | 144941 | #!/usr/bin/env python
## @package sct_straighten_spinalcord
#
# - run a gaussian weighted slice by slice registration over a machine to straighten the spinal cord.
# - use the centerline previously calculated during the registration but fitted with spline interpolation to improve the spinal cord straightening
# - find... | mit |
cloudera/ibis | ibis/backends/base_sqlalchemy/alchemy.py | 1 | 48611 | import contextlib
import functools
import operator
from typing import List, Optional
import pandas as pd
import sqlalchemy as sa
import sqlalchemy.sql as sql
from pkg_resources import parse_version
from sqlalchemy.dialects.mysql.base import MySQLDialect
from sqlalchemy.dialects.postgresql.base import PGDialect as Post... | apache-2.0 |
makinacorpus/formhub | utils/export_tools.py | 1 | 30390 | import os
import re
import csv
from openpyxl.workbook import Workbook
import json
from bson import json_util
from datetime import datetime
from django.conf import settings
from pyxform.section import Section, RepeatingSection
from pyxform.question import Question
from django.core.files.base import File
from django.core... | bsd-2-clause |
boland1992/seissuite_iran | bin/02_timeseries_process.py | 1 | 34628 | #!/usr/bin/python -u
"""
[Advice: run this script using python with unbuffered output:
`python -u 01_timeseries_process.py`]
This script reads seismic waveform data from a set of stations, and
calculates the cross-correlations between all pairs of stations. The
data (in miniseed format) must be located in folder *MSEE... | gpl-3.0 |
bajibabu/merlin | misc/recipes/MGE/run_mge_dnn.py | 2 | 43353 |
import pickle
import gzip
import os, sys, errno
import time
import math
# numpy & theano imports need to be done in this order (only for some numpy installations, not sure why)
import numpy
#import gnumpy as gnp
# we need to explicitly import this in some cases, not sure why this doesn't get imported with numpy itse... | apache-2.0 |
dkasak/pacal | pacal/indeparith.py | 1 | 57228 | """Probabilistic arithmetic on independent random variables."""
import itertools
from functools import partial
import bisect
import operator
from numpy import asfarray
from numpy import multiply, add, divide
from numpy import unique, isnan, isscalar, size
from numpy import sign, isinf, isfinite
from numpy import mini... | gpl-3.0 |
CGATOxford/CGATPipelines | CGATPipelines/pipeline_rnaseqdiffexpression.py | 1 | 53106 | """========================================
RNA-Seq Differential expression pipeline
========================================
The RNA-Seq differential expression pipeline performs differential
expression analysis. It requires three inputs:
1. A geneset in :term:`gtf` formatted file
2. Mapped reads in :term:`ba... | mit |
apbard/scipy | scipy/signal/ltisys.py | 1 | 116403 | """
ltisys -- a collection of classes and functions for modeling linear
time invariant systems.
"""
from __future__ import division, print_function, absolute_import
#
# Author: Travis Oliphant 2001
#
# Feb 2010: Warren Weckesser
# Rewrote lsim2 and added impulse2.
# Apr 2011: Jeffrey Armstrong <jeff@approximatrix.co... | bsd-3-clause |
tectronics/mwavepy | mwavepy/network.py | 1 | 62496 |
# network.py
#
#
# Copyright 2010 alex arsenovic <arsenovic@virginia.edu>
# Copyright 2010 lihan chen
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Fo... | gpl-3.0 |
cowlicks/dask | dask/dataframe/tests/test_arithmetics_reduction.py | 1 | 33920 | from datetime import datetime
import pytest
import numpy as np
import pandas as pd
from dask.utils import raises
import dask.dataframe as dd
from dask.dataframe.utils import eq, assert_dask_graph, make_meta
@pytest.mark.slow
def test_arithmetics():
dsk = {('x', 0): pd.DataFrame({'a': [1, 2, 3], 'b': [4, 5, 6]},... | bsd-3-clause |
ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit | cat/consensus.py | 1 | 58711 | """
Generates consensus gene set.
This module takes as input the genePreds produced by transMap, AugustusTM(R) and AugustusCGP and generates a consensus
of these, producing a filtered gene set.
This process relies on a combination of metrics and evaluations loaded to a sqlite database by the classify module.
GFF3 t... | apache-2.0 |
ME-ICA/me-ica | meica.py | 1 | 44053 | #!/usr/bin/env python
__version__="v3.2 beta1"
welcome_block="""
# Multi-Echo ICA, Version %s
#
# Kundu, P., Brenowitz, N.D., Voon, V., Worbe, Y., Vertes, P.E., Inati, S.J., Saad, Z.S.,
# Bandettini, P.A. & Bullmore, E.T. Integrated strategy for improving functional
# connectivity mapping using multiecho fMRI. PNAS (... | lgpl-2.1 |
kedz/cuttsum | trec2015/sbin/l2s/idea.py | 1 | 41379 | import cuttsum.events
import cuttsum.corpora
from cuttsum.pipeline import InputStreamResource
from mpi4py import MPI
from cuttsum.misc import enum
from cuttsum.classifiers import NuggetRegressor
import numpy as np
import pandas as pd
import random
import pyvw
from datetime import datetime
from sklearn.feature_extractio... | apache-2.0 |
openego/eTraGo | etrago/tools/utilities.py | 1 | 56402 | # -*- coding: utf-8 -*-
# Copyright 2016-2018 Flensburg University of Applied Sciences,
# Europa-Universität Flensburg,
# Centre for Sustainable Energy Systems,
# DLR-Institute for Networked Energy Systems
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU Affero G... | agpl-3.0 |
cloudera/ibis | ibis/tests/sql/test_compiler.py | 1 | 69036 | import datetime
import unittest
import pytest
import ibis
import ibis.expr.api as api
import ibis.expr.operations as ops
from ibis.backends.base_sql.compiler import BaseDialect, build_ast, to_sql
from ibis.tests.expr.mocks import MockConnection
pytest.importorskip('sqlalchemy')
class TestASTBuilder(unittest.TestCa... | apache-2.0 |
pcrumley/Iseult | src/main_app.py | 1 | 160238 | #! /usr/bin/env python
import re # regular expressions
import os, sys # Used to make the code portable
import h5py # Allows us the read the data files
import time, string, io
from PIL import Image
import matplotlib
matplotlib.use('TkAgg')
import new_cmaps
import numpy as np
from collections import deque
import matplotl... | gpl-3.0 |
fboers/jumeg | jumeg/jumeg_utils.py | 1 | 49986 | '''
Utilities module for jumeg
'''
# Authors: Jurgen Dammers (j.dammers@fz-juelich.de)
# Praveen Sripad (pravsripad@gmail.com)
# Eberhard Eich (e.eich@fz-juelich.de) ()
#
# License: BSD (3-clause)
import sys
import os
import os.path as op
import fnmatch
import numpy as np
import scipy as sci
from s... | bsd-3-clause |
mkukielka/oddt | oddt/toolkits/extras/rdkit/fixer.py | 1 | 43688 | from __future__ import division, print_function, absolute_import
import os
from collections import OrderedDict
from itertools import combinations, chain
import sys
from six.moves import urllib
import numpy as np
import pandas as pd
from scipy.spatial.distance import cdist
from rdkit import RDLogger
from rdkit import... | bsd-3-clause |
liantian-cn/ms17_010_scanner_gui | lib/appJar/appjar.py | 1 | 300568 | # -*- coding: utf-8 -*-
"""appJar.py: Provides a GUI class, for making simple tkinter GUIs."""
# Nearly everything I learnt came from: http://effbot.org/tkinterbook/
# with help from: http://infohost.nmt.edu/tcc/help/pubs/tkinter/web/index.html
# with snippets from stackexchange.com
# make print backwards compatible
f... | unlicense |
ATNF/askapsdp | Tools/Dev/epicsdb/askapdev/epicsdb/AdbeParser.py | 1 | 80262 | from __future__ import print_function
import os, sys, shutil
import glob
import time
from xml.parsers.expat import ExpatError, ErrorString
from xml.etree import ElementTree as etree
import re
import string
from .epics_db import OrderedDict, EpicsRecord, EpicsDB
#TODO
# need to replace boy xml write with Etree so xml... | gpl-2.0 |
Eigenstate/msmbuilder | msmbuilder/featurizer/featurizer.py | 1 | 66359 | # Author: Kyle A. Beauchamp <kyleabeauchamp@gmail.com>
# Contributors: Robert McGibbon <rmcgibbo@gmail.com>,
# Matthew Harrigan <matthew.p.harrigan@gmail.com>
# Brooke Husic <brookehusic@gmail.com>,
# Muneeb Sultan <msultan@stanford.edu>
# Robin Betz <robin@robinb... | lgpl-2.1 |
sterbini/MDToolbox | myToolbox.py | 1 | 35677 | # This sucks!
print('Version 0.03. This is the latest version.')
print('Please help me to improve it reporting bugs to guido.sterbini@cern.ch.')
# Fixes with respect to v0.2.
# unixtime2datetimeVectorize modified len with np.size
# Fixes with respect to v0.1.
# Fixed the bug of the local/UTC time in importing the matl... | mit |
dricciardelli/vae2vec | def_def_oh_eb.py | 1 | 36534 | ''' Significant lifting from https://jmetzen.github.io/2015-11-27/vae.html '''
import time
import numpy as np
import tensorflow as tf
from tensorflow.python.ops import rnn
import random
import matplotlib.pyplot as plt
import re, string
from sklearn.feature_extraction.text import CountVectorizer
from collections impo... | mit |
wmvanvliet/mne-python | mne/inverse_sparse/mxne_optim.py | 1 | 58424 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Daniel Strohmeier <daniel.strohmeier@gmail.com>
# Mathurin Massias <mathurin.massias@gmail.com>
# License: Simplified BSD
import functools
from math import sqrt
import numpy as np
from .mxne_debiasing import compute_bias
from ..utils import... | bsd-3-clause |
plotly/plotly.py | packages/python/plotly/plotly/matplotlylib/renderer.py | 1 | 35485 | """
Renderer Module
This module defines the PlotlyRenderer class and a single function,
fig_to_plotly, which is intended to be the main way that user's will interact
with the matplotlylib package.
"""
from __future__ import absolute_import
import six
import warnings
import plotly.graph_objs as go
from plotly.matplo... | mit |
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