repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
runt18/nupic | external/linux32/lib/python2.6/site-packages/matplotlib/lines.py | 1 | 48241 | """
This module contains all the 2D line class which can draw with a
variety of line styles, markers and colors.
"""
# TODO: expose cap and join style attrs
from __future__ import division
import numpy as np
from numpy import ma
from matplotlib import verbose
import artist
from artist import Artist
from cbook import ... | agpl-3.0 |
epfl-lts2/pygsp | pygsp/graphs/graph.py | 1 | 33939 | # -*- coding: utf-8 -*-
from __future__ import division
import os
from collections import Counter
import numpy as np
from scipy import sparse
from pygsp import utils
from .fourier import FourierMixIn
from .difference import DifferenceMixIn
from ._io import IOMixIn
from ._layout import LayoutMixIn
class Graph(Four... | bsd-3-clause |
MS047/XtraDataManager | XtraDataManager/FeaturesExtraction.py | 1 | 57057 | # -*- coding utf-8 -*-
from __future__ import print_function
# This script gathers the routines to extract kilosort/phy (kwikteam) generated units features,
# stored in an instance of DataManager():
# - Sampling rate (30Khz)
# - Spike times in sample units
# - Spikes times in seconds
# - Spikes units, unit correspondi... | gpl-3.0 |
bema-ligo/pycbc | pycbc/future.py | 1 | 76491 | # Copyright (C) 2012 Alex Nitz
#
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in t... | gpl-3.0 |
ntbrewer/Pyspectr | build/lib/Pyspectr/pydamm.py | 1 | 59209 | #!/usr/bin/env python3
"""K. Miernik 2012
k.a.miernik@gmail.com
Distributed under GNU General Public Licence v3
This module is inteded to be loaded in an interactive interpreter session.
The ipython is strongly recommended. The pydamm is a python replacement for
DAMM programm.
"""
import math
import numpy as np
impo... | gpl-3.0 |
jamespeterschinner/async_v20 | async_v20/definitions/primitives.py | 1 | 58489 | import logging
import pandas as pd
from .helpers import domain_check
from ..exceptions import InvalidValue, InvalidFormatArguments
logger = logging.getLogger(__name__)
__all__ = ['AcceptDatetimeFormat', 'AccountFinancingMode', 'AccountID', 'AccountUnits', 'CancellableOrderType',
'CandlestickGranularity',... | mit |
dhomeier/astropy | astropy/table/tests/test_table.py | 1 | 101474 | # -*- coding: utf-8 -*-
# Licensed under a 3-clause BSD style license - see LICENSE.rst
from astropy.utils.tests.test_metadata import MetaBaseTest
import gc
import sys
import copy
from io import StringIO
from collections import OrderedDict
import pickle
import pytest
import numpy as np
from numpy.testing import asser... | bsd-3-clause |
zfrenchee/pandas | pandas/core/indexes/timedeltas.py | 1 | 34462 | """ implement the TimedeltaIndex """
from datetime import timedelta
import numpy as np
from pandas.core.dtypes.common import (
_TD_DTYPE,
is_integer,
is_float,
is_bool_dtype,
is_list_like,
is_scalar,
is_timedelta64_dtype,
is_timedelta64_ns_dtype,
pandas_dtype,
_ensure_int64)
fro... | bsd-3-clause |
mattip/numpy | numpy/lib/npyio.py | 1 | 90472 | import sys
import os
import re
import functools
import itertools
import warnings
import weakref
import contextlib
from operator import itemgetter, index as opindex
from collections.abc import Mapping
import numpy as np
from . import format
from ._datasource import DataSource
from numpy.core import overrides
from numpy... | bsd-3-clause |
MJuddBooth/pandas | pandas/io/formats/format.py | 1 | 55267 | # -*- coding: utf-8 -*-
"""
Internal module for formatting output data in csv, html,
and latex files. This module also applies to display formatting.
"""
from __future__ import print_function
from functools import partial
import numpy as np
from pandas._libs import lib
from pandas._libs.tslib import format_array_fr... | bsd-3-clause |
Transkribus/TranskribusDU | TranskribusDU/tasks/TablePrototypes/DU_ABPTableRCut1SIO.py | 1 | 34506 | # -*- coding: utf-8 -*-
"""
DU task for ABP Table: doing jointly row BIESO and horizontal cuts
block2line edges do not cross another block.
The cut are based on baselines of text blocks.
- the labels of horizontal cuts are SIO (instead of SO in previous version)
Copyright Naver Labs... | bsd-3-clause |
ljwolf/spvcm | spvcm/abstracts.py | 1 | 33984 | import warnings
from datetime import datetime as dt
import numpy as np
import copy
import multiprocessing as mp
import pandas as pd
import os
from .sqlite import head_to_sql, start_sql
from .plotting import plot_trace
from collections import OrderedDict
try:
from tqdm import tqdm
import six
if not six.PY3... | mit |
wmvanvliet/mne-python | mne/utils/docs.py | 1 | 102603 | # -*- coding: utf-8 -*-
"""The documentation functions."""
# Authors: Eric Larson <larson.eric.d@gmail.com>
#
# License: BSD (3-clause)
from copy import deepcopy
import inspect
import os
import os.path as op
import sys
import warnings
import webbrowser
from ..defaults import HEAD_SIZE_DEFAULT
from ..externals.doccer ... | bsd-3-clause |
queid7/hma | modules/util/ys_mat_plot_ex.py | 1 | 47498 | import pickle
import matplotlib
# matplotlib.interactive(True)
# matplotlib.use('FltkAgg')
matplotlib.use('agg')
from pylab import *
from matplotlib.widgets import *
from matplotlib import collections
from matplotlib.colors import color_converter
import sys
if '..' not in sys.path:
sys.path.append('..')
impor... | mit |
ryanmdavis/BioTechTopics | BioTechTopics.py | 1 | 33864 | import os, json, string, nltk, sys, inspect
from nltk.stem.porter import *
from sklearn.feature_extraction.text import TfidfVectorizer,CountVectorizer
from sklearn.decomposition import LatentDirichletAllocation
from nltk.corpus import stopwords
from sklearn.metrics.pairwise import linear_kernel
from summa import keywor... | mit |
FrederichCheng/incubator-superset | superset/viz.py | 1 | 55055 | """This module contains the "Viz" objects
These objects represent the backend of all the visualizations that
Superset can render.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
import copy
import hashlib
import l... | apache-2.0 |
peraktong/Cannon-Experiment | 0516_plot_jason_nick_aspcap_add_vsini.py | 1 | 35028 | import numpy as np
from astropy.table import Table
from astropy.io import fits
import matplotlib.pyplot as plt
import matplotlib
import pickle
from matplotlib import cm
from numpy.random import randn
# table path
path = "/Users/caojunzhi/Downloads/upload_20170330_all/dr13.fits"
star = fits.open(path)
table = Table.... | mit |
phobson/statsmodels | statsmodels/discrete/discrete_model.py | 1 | 116223 | """
Limited dependent variable and qualitative variables.
Includes binary outcomes, count data, (ordered) ordinal data and limited
dependent variables.
General References
--------------------
A.C. Cameron and P.K. Trivedi. `Regression Analysis of Count Data`.
Cambridge, 1998
G.S. Madalla. `Limited-Dependent an... | bsd-3-clause |
parthea/pydatalab | solutionbox/structured_data/mltoolbox/_structured_data/_package.py | 1 | 30767 | # Copyright 2017 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | apache-2.0 |
darafferty/factor | factor/check_progress.py | 1 | 38493 | """
Module that checks and displays the progress of a run
"""
import sys
import os
import subprocess
import shutil
import numpy as np
import pickle
import logging
import glob
import ConfigParser
import factor
import factor.directions
import factor.parset
import casacore.images as pim
import ast
from astropy.coordinates... | gpl-2.0 |
josephcslater/scipy | scipy/optimize/nonlin.py | 1 | 46688 | r"""
Nonlinear solvers
-----------------
.. currentmodule:: scipy.optimize
This is a collection of general-purpose nonlinear multidimensional
solvers. These solvers find *x* for which *F(x) = 0*. Both *x*
and *F* can be multidimensional.
Routines
~~~~~~~~
Large-scale nonlinear solvers:
.. autosummary::
newto... | bsd-3-clause |
iproduct/course-social-robotics | 11-dnn-keras/venv/Lib/site-packages/matplotlib/tri/triinterpolate.py | 1 | 64375 | """
Interpolation inside triangular grids.
"""
import numpy as np
from matplotlib import cbook
from matplotlib.tri import Triangulation
from matplotlib.tri.trifinder import TriFinder
from matplotlib.tri.tritools import TriAnalyzer
__all__ = ('TriInterpolator', 'LinearTriInterpolator', 'CubicTriInterpolator')
class... | gpl-2.0 |
Neurosim-lab/netpyne | netpyne/analysis/network.py | 1 | 70340 | """
Module for analyzing and plotting connectivity-related results
"""
from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
from __future__ import absolute_import
from builtins import open
from builtins import next
from builtins import range
from builtins impo... | mit |
krischer/wfdiff | src/wfdiff/wfdiff.py | 1 | 35702 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Main wfdiff interfaces.
:copyright:
Lion Krischer (krischer@geophysik.uni-muenchen.de), 2015
:license:
GNU General Public License, Version 3
(http://www.gnu.org/copyleft/gpl.html)
"""
# The following two lines are the main reason why the code works in Pytho... | gpl-3.0 |
zak-k/cartopy | lib/cartopy/io/ogc_clients.py | 1 | 35074 | # (C) British Crown Copyright 2014 - 2017, Met Office
#
# This file is part of cartopy.
#
# cartopy is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option)... | lgpl-3.0 |
simion1232006/pyroms | pyroms/grid.py | 1 | 33164 | "grid.py"
from numpy import *
import pylab as pl
import netCDF4
import os
import warnings
import pyroms
from datetime import datetime, timedelta
try:
from matplotlib.toolkits.basemap import Basemap
except:
pass
try:
from scipy.sandbox import delaunay
except:
pass
def extrapolate_mask(a, mask=None):
... | bsd-3-clause |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/layout/polar/_angularaxis.py | 1 | 77294 | from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class AngularAxis(_BaseLayoutHierarchyType):
# class properties
# --------------------
_parent_path_str = "layout.polar"
_path_str = "layout.polar.angularaxis"
_valid_props = {
"autot... | mit |
pyranges/pyrle | pyrle/rle.py | 1 | 35267 | """Data structure for run length encoding representation and arithmetic."""
from pyrle.src.rle import sub_rles, add_rles, mul_rles, div_rles_zeroes, div_rles_nonzeroes
from pyrle.src.coverage import _remove_dupes
from pyrle.src.getitem import getitem, getlocs, getitems
import pyrle as rle
import pandas as pd
import ... | mit |
gplepage/lsqfit | src/lsqfit/_extras.py | 1 | 71164 | """ part of lsqfit module: extra functions """
# Created by G. Peter Lepage (Cornell University) on 2012-05-31.
# Copyright (c) 2012-18 G. Peter Lepage.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software F... | gpl-3.0 |
MiladHooshyar/DrainageNetworkExtraction | DrainageNetworkExtraction/Channel_Fun.py | 1 | 47923 | import arcpy
from arcpy import env, mapping, Raster
from arcpy.sa import *
import numpy as np
from numpy import arange, cos, linspace, pi, sin, random , array
from scipy.interpolate import splprep, splev
import matplotlib.pyplot as pl
import os
import sys
from random import randrange
arcpy.CheckOutExtension("Spatial")... | mit |
rlabbe/filterpy | filterpy/kalman/kalman_filter.py | 1 | 56499 | # -*- coding: utf-8 -*-
# pylint: disable=invalid-name, too-many-arguments, too-many-branches,
# pylint: disable=too-many-locals, too-many-instance-attributes, too-many-lines
"""
This module implements the linear Kalman filter in both an object
oriented and procedural form. The KalmanFilter class implements
the filter... | mit |
JossinetLab/CAAGLE | scripts/import_CGD.py | 1 | 34455 | #!/usr/bin/env python
"""
COMMAND-LINE
------------
You can run the program with this command-line:
./import_CGD.py
For example:
./import_CGD.py -locus 1,10
ARGUMENTS
---------
-locus: list of Integers. Each Integer corresponds to the position of the locus tag in the file named locus_tag.txt (by default: None ; all ... | mit |
DailyActie/Surrogate-Model | 01-codes/scikit-learn-master/sklearn/decomposition/nmf.py | 1 | 47059 | """ Non-negative matrix factorization
"""
# Author: Vlad Niculae
# Lars Buitinck <L.J.Buitinck@uva.nl>
# Mathieu Blondel <mathieu@mblondel.org>
# Tom Dupre la Tour
# Author: Chih-Jen Lin, National Taiwan University (original projected gradient
# ... | mit |
janelia-flyem/gala | gala/evaluate.py | 1 | 49896 | # coding=utf-8
import numpy as np
import multiprocessing
import itertools as it
import collections as coll
from functools import partial
import logging
import h5py
import scipy.ndimage as nd
import scipy.sparse as sparse
from skimage.segmentation import relabel_sequential
from scipy.ndimage.measurements import label
f... | bsd-3-clause |
tanghaibao/jcvi | jcvi/assembly/hic.py | 1 | 57613 | #!/usr/bin/env python
# -*- coding: UTF-8 -*-
"""
Process Hi-C output into AGP for chromosomal-scale scaffolding.
"""
import array
import json
import logging
import math
import os
import os.path as op
import sys
from collections import defaultdict
from functools import partial
from multiprocessing import Pool
import ... | bsd-2-clause |
antiface/audiolazy | audiolazy/lazy_filters.py | 1 | 47749 | # -*- coding: utf-8 -*-
# This file is part of AudioLazy, the signal processing Python package.
# Copyright (C) 2012-2014 Danilo de Jesus da Silva Bellini
#
# AudioLazy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foun... | gpl-3.0 |
Sohojoe/damon | damon1/tests.py | 1 | 44822 | # -*- coding: utf-8 -*-
# opts.py
"""tests.py
unit tests for tools and methods related to Damon.
Copyright (c) 2016, Mark H. Moulton
"""
#234567890123456789012345678901234567890123456789012345678901234567890123456789
import os
import sys
import numpy as np
import numpy.random as npr
import numpy.linalg as npla
imp... | apache-2.0 |
jcmgray/xarray | xarray/tests/test_plot.py | 1 | 53756 | from __future__ import absolute_import, division, print_function
import inspect
from datetime import datetime
import numpy as np
import pandas as pd
import pytest
import xarray.plot as xplt
from xarray import DataArray
from xarray.coding.times import _import_cftime
from xarray.plot.plot import _infer_interval_breaks... | apache-2.0 |
chaluemwut/fbserver | venv/lib/python2.7/site-packages/sklearn/tests/test_common.py | 1 | 47590 | """
General tests for all estimators in sklearn.
"""
# Authors: Andreas Mueller <amueller@ais.uni-bonn.de>
# Gael Varoquaux gael.varoquaux@normalesup.org
# License: BSD 3 clause
from __future__ import print_function
import os
import warnings
import sys
import traceback
import inspect
import pickle
import pkg... | apache-2.0 |
luca-s/alphalens | alphalens/performance.py | 1 | 52040 | #
# Copyright 2017 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
CamDavidsonPilon/lifelines | lifelines/fitters/coxph_fitter.py | 1 | 135830 | # -*- coding: utf-8 -*-
from typing import Callable, Iterator, List, Optional, Tuple, Union, Any, Iterable
from textwrap import dedent, fill
from datetime import datetime
import warnings
import time
from numpy import dot, einsum, log, exp, zeros, arange, multiply, ndarray
import numpy as np
from scipy.linalg import so... | mit |
GuessWhoSamFoo/pandas | pandas/tests/io/test_packers.py | 1 | 33322 | import datetime
from distutils.version import LooseVersion
import glob
import os
from warnings import catch_warnings
import numpy as np
import pytest
from pandas._libs.tslib import iNaT
from pandas.compat import PY3, u
from pandas.errors import PerformanceWarning
import pandas
from pandas import (
Categorical, D... | bsd-3-clause |
BennettLandman/pyPheWAS | pyPheWAS/pyPhewasCorev2.py | 1 | 34636 | """
**pyPheWAS Core version 2 (main pyPheWAS code)**
Contains all functions that drive the core PheWAS & ProWAS analysis tools.
"""
from collections import Counter
import getopt
import math
import matplotlib.pyplot as plt
from matplotlib.backends.backend_pdf import PdfPages
import numpy as np
import os
import pandas ... | mit |
cmorgan/pysystemtrade | syscore/optimisation.py | 1 | 39785 | '''
Created on 21 Jan 2016
@author: rob
'''
import pandas as pd
import numpy as np
import datetime
from scipy.optimize import minimize
from copy import copy
import random
from syscore.correlations import boring_corr_matrix, get_avg_corr
from syscore.dateutils import generate_fitting_dates, BUSINESS_DAYS_IN_YEAR, WEE... | gpl-3.0 |
dwavesystems/dimod | tests/test_sampleset.py | 1 | 45370 | # Copyright 2018 D-Wave Systems Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | apache-2.0 |
toobaz/pandas | pandas/core/arrays/sparse.py | 1 | 71362 | """
SparseArray data structure
"""
from collections import abc
import numbers
import operator
import re
from typing import Any, Callable
import warnings
import numpy as np
from pandas._libs import index as libindex, lib
import pandas._libs.sparse as splib
from pandas._libs.sparse import BlockIndex, IntIndex, SparseIn... | bsd-3-clause |
kevin-intel/scikit-learn | sklearn/linear_model/tests/test_coordinate_descent.py | 2 | 55584 | # Authors: Olivier Grisel <olivier.grisel@ensta.org>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# License: BSD 3 clause
import numpy as np
import pytest
from scipy import interpolate, sparse
from copy import deepcopy
import joblib
from sklearn.base import is_classifier
from sklearn.base import clone
... | bsd-3-clause |
StochasticNumerics/mimclib | mimclib/plot.py | 1 | 52098 | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import numpy as np
import matplotlib.pylab as plt
from . import mimc
from matplotlib.ticker import MaxNLocator
__all__ = []
def public(sym):
__all__.append(sym.__name__)
return sym
@public
class Fun... | gpl-2.0 |
ratnania/pigasus | python/fem/field.py | 1 | 35259 | # -*- coding: UTF-8 -*-
#! /usr/bin/python
# To change this template, choose Tools | Templates
# and open the template in the editor.
__author__="ARA"
__all__ = ['field']
__date__ ="$Jan 11, 2012 3:24:13 PM$"
from . import common_obj as _com
from . import constants as _cst
import numpy as _np
from numpy import zeros... | mit |
samgale/ImageGui | ImageGui.py | 1 | 193092 | # -*- coding: utf-8 -*-
"""
Image visualization and analysis GUI
Find Allen common coordinate framework data here:
http://help.brain-map.org/display/mouseconnectivity/API
http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/average_template/
http://download.alleninstitute.org/informatics-ar... | mit |
ljwolf/pysal | pysal/weights/Distance.py | 1 | 30290 | from ..cg.kdtree import KDTree
from .weights import W
from .util import isKDTree, get_ids, get_points_array_from_shapefile, get_points_array
import copy
from warnings import warn as Warn
import numpy as np
__all__ = ["KNN", "Kernel", "DistanceBand"]
__author__ = "Sergio J. Rey <srey@asu.edu>, Levi John Wolf <levi.john... | bsd-3-clause |
jmmease/pandas | pandas/tests/frame/test_to_csv.py | 1 | 44971 | # -*- coding: utf-8 -*-
from __future__ import print_function
import csv
import pytest
from numpy import nan
import numpy as np
from pandas.compat import (lmap, range, lrange, StringIO, u)
from pandas.errors import ParserError
from pandas import (DataFrame, Index, Series, MultiIndex, Timestamp,
... | bsd-3-clause |
bert9bert/statsmodels | statsmodels/tsa/statespace/mlemodel.py | 1 | 111510 | """
State Space Model
Author: Chad Fulton
License: Simplified-BSD
"""
from __future__ import division, absolute_import, print_function
from statsmodels.compat.python import long
import numpy as np
import pandas as pd
from scipy.stats import norm
from .simulation_smoother import SimulationSmoother
from .kalman_smooth... | bsd-3-clause |
omki2005/influxdb-python | influxdb/tests/dataframe_client_test.py | 1 | 30113 | # -*- coding: utf-8 -*-
"""Unit tests for misc module."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
from datetime import timedelta
import json
import unittest
import warnings
import requests_mock
from influxdb... | mit |
kklmn/xrt | xrt/backends/raycing/__init__.py | 1 | 48305 | # -*- coding: utf-8 -*-
"""
Package :mod:`~xrt.backends.raycing` provides the internal backend of xrt. It
defines beam sources in the module :mod:`~xrt.backends.raycing.sources`,
rectangular and round apertures in :mod:`~xrt.backends.raycing.apertures`,
optical elements in :mod:`~xrt.backends.raycing.oes`, material pro... | mit |
ruymanengithub/vison | vison/metatests/bf.py | 1 | 35089 | #!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Mon Jul 22 17:01:36 2019
@author: raf
"""
# IMPORT STUFF
from pdb import set_trace as stop
import copy
import numpy as np
from collections import OrderedDict
import string as st
import os
import matplotlib.cm as cm
from vison.fpa import fpa as fpamod
fro... | gpl-3.0 |
labase/eica | src/analisys/minutia.py | 1 | 50913 | # -*- coding: UTF8 -*-
# import operator
import os
from csv import writer
import matplotlib.pyplot as plt
import matplotlib
matplotlib.use('Agg')
import pywt
from tinydb import TinyDB, Query
from matplotlib import collections as mc
import numpy as np
# import operator
# from datetime import datetime as dt
# from date... | gpl-2.0 |
nickgu/kvdict2 | script/pydev.py | 1 | 43821 | #! /bin/env python
# encoding=utf-8
# gusimiu@baidu.com
# datemark: 20150428
#
# V1.6:
# add TempStorage.
#
# V1.5:
# add png_to_array
#
# V1.4:
# add zip_channel, index_to_one_hot
#
# V1.3:
# add DimAnalysis
#
# V1.2:
# add FileProgress
#
# V1.1:
# add MailSender an... | mit |
NixaSoftware/CVis | venv/lib/python2.7/site-packages/pandas/tests/groupby/test_groupby.py | 1 | 146594 | # -*- coding: utf-8 -*-
from __future__ import print_function
import pytest
from warnings import catch_warnings
from string import ascii_lowercase
from datetime import datetime
from numpy import nan
from pandas import (date_range, bdate_range, Timestamp,
Index, MultiIndex, DataFrame, Series,
... | apache-2.0 |
rherault-insa/numpy | numpy/core/tests/test_multiarray.py | 1 | 238195 | from __future__ import division, absolute_import, print_function
import collections
import tempfile
import sys
import shutil
import warnings
import operator
import io
import itertools
import ctypes
import os
if sys.version_info[0] >= 3:
import builtins
else:
import __builtin__ as builtins
from decimal import D... | bsd-3-clause |
tomevans/linvb | linvb/vbr_utilities.py | 1 | 38579 | import numpy as np
import scipy.linalg
import pdb
import math
import matplotlib.pyplot as plt
def describe( vbr_object ):
"""
Prints some information about the VBR object to screen.
"""
print '--------------------------------------------------------------------------------'
print 'VBR object descr... | gpl-2.0 |
zfrenchee/pandas | pandas/tests/frame/test_operators.py | 1 | 45039 | # -*- coding: utf-8 -*-
from __future__ import print_function
from collections import deque
from datetime import datetime
import operator
import pytest
from numpy import nan, random
import numpy as np
from pandas.compat import lrange, range
from pandas import compat
from pandas import (DataFrame, Series, MultiIndex... | bsd-3-clause |
matthewpklein/battsimpy | tests/dae_genPart_T_distTest.py | 1 | 71795 | import numpy
import numpy.linalg
import scipy.linalg
import scipy.interpolate
from scipy.signal import wiener, filtfilt, butter, gaussian
from scipy.ndimage import filters
from matplotlib import pyplot as plt
plt.style.use('classic')
from assimulo.solvers import IDA
from assimulo.problem import Implicit_Problem
fro... | gpl-3.0 |
SanPen/GridCal | src/research/power_flow/newton_line_search.py | 1 | 42687 | # Copyright (c) 1996-2015 PSERC. All rights reserved.
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE_MATPOWER file.
# Copyright 1996-2015 PSERC. All rights reserved.
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE file.
#... | gpl-3.0 |
itaiin/arrow | python/pyarrow/pandas_compat.py | 1 | 32938 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
qiime2-plugins/normalize | q2_feature_table/tests/filter/test_filter_samples.py | 1 | 33852 | # ----------------------------------------------------------------------------
# Copyright (c) 2016-2021, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
materialsproject/pymatgen | pymatgen/analysis/phase_diagram.py | 1 | 118213 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module defines tools to generate and analyze phase diagrams.
"""
import collections
import itertools
import json
import logging
import math
import os
import re
from functools import lru_cache
import ... | mit |
Bleyddyn/malpi | exp/pg-pole.py | 1 | 33115 | """ Trains an agent with Deep Q Learning or Double DQN on Breakout. Uses OpenAI Gym.
"""
import sys
import os
sys.path.insert(0,os.path.expanduser('~/Library/Python/2.7/lib/python/site-packages/'))
import numpy as np
import cPickle as pickle
import gym
from optparse import OptionParser
import itertools
import random
... | mit |
eost/wphase | bin/sacpy.py | 1 | 33251 | '''
A simple class that deals with sac files
Written by Z. Duputel, December 2013
available on GitHub: https://github.com/eost/sacpy.git
'''
############################################################################
#
# W phase source inversion package
# ... | gpl-3.0 |
cvjena/libmaxdiv | maxdiv/gui.py | 1 | 58706 | # coding=utf-8
"""Graphical User Interface to the MDI algorithm.
Provides a user interface for loading multivariate time-series from CSV files,
setting the MDI parameters, running the algorithm and inspecting the detected intervals.
Only non-spatial data is supported at the moment.
"""
try:
# Python 3
impor... | lgpl-3.0 |
linebp/pandas | pandas/tests/series/test_operators.py | 1 | 70480 | # coding=utf-8
# pylint: disable-msg=E1101,W0612
import pytest
import pytz
from collections import Iterable
from datetime import datetime, timedelta
import operator
from itertools import product, starmap
from numpy import nan, inf
import numpy as np
import pandas as pd
from pandas import (Index, Series, DataFrame, ... | bsd-3-clause |
VoigtLab/dnaplotlib | dnaplotlib/dnaplotlib.py | 1 | 135665 | #!/usr/bin/env python
"""
DNAplotlib
==========
This module is designed to allow for highly customisable visualisation of DNA
fragments. Diagrams can be in the form of conceptual SBOL compliant icons or
make use of icons whose width is scaled to allow for easier comparison of part
locations to trace in... | mit |
bloerg/aspect-tools | render_icons.py | 1 | 40594 | # -*- coding: utf-8 -*-
#script that uses an input file similar to the full0_0.html files of an ASPECT run to make a mapping file from mjd-plateid-fiber-id to som_x,som_y
#please install python-beautifulsoup4, python-lxml
#in ubuntu do: sudo aptitude install python-bs4 python-lxml
#in fedora do: dnf install python-be... | gpl-3.0 |
xuewei4d/scikit-learn | sklearn/utils/estimator_checks.py | 4 | 118917 | import types
import warnings
import pickle
import re
from copy import deepcopy
from functools import partial, wraps
from inspect import signature
import numpy as np
from scipy import sparse
from scipy.stats import rankdata
import joblib
from . import IS_PYPY
from .. import config_context
from ._testing import _get_ar... | bsd-3-clause |
winklerand/pandas | pandas/io/excel.py | 1 | 64173 | """
Module parse to/from Excel
"""
# ---------------------------------------------------------------------
# ExcelFile class
from datetime import datetime, date, time, MINYEAR
import os
import abc
import warnings
import numpy as np
from pandas.core.dtypes.common import (
is_integer, is_float,
is_bool, is_lis... | bsd-3-clause |
infinnovation/piwall-cvtools | piwall.py | 1 | 52153 | #!/usr/bin/env python
'''
Prototype .piwall generator to find monitor geometry from photograph of a piwall.
Can operate sequentially on a set of photos to compare and contrast results.
Commit Summary
-
Repeat test of the basic rectangle matching (c055d3a) against red backgrounds.
-
c055d3a Basic demonstra... | gpl-3.0 |
churchlab/phip-stat | gibbs.py | 1 | 34200 | #! /usr/bin/env python
# Copyright 2014 Uri Laserson
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | apache-2.0 |
tkarna/cofs | thetis/interpolation.py | 1 | 31094 | """
Methods for interpolating data from structured data sets on Thetis fields.
Simple example of an atmospheric pressure interpolator:
.. code-block:: python
def to_latlon(x, y, positive_lon=False):
# Converts mesh (x,y) points to coordinates used in the atm data
lon, lat = coordsys_spcs.spcs2lo... | mit |
iosonofabio/singlet | singlet/dataset/__init__.py | 1 | 56056 | # vim: fdm=indent
# author: Fabio Zanini
# date: 14/08/17
# content: Dataset that combines feature counts with metadata.
# Modules
import numpy as np
import pandas as pd
from ..samplesheet import SampleSheet
from ..counts_table import CountsTable
from ..featuresheet import FeatureSheet
from .plugins impor... | mit |
Rinoahu/POEM | lib/deprecate/deep_operon.py | 1 | 42170 | #! /usr/bin/env python
# -*- coding: utf-8 -*-
# vim:fenc=utf-8
# CreateTime: 2016-09-21 16:51:48
import numpy as np
from Bio import SeqIO, Seq, SeqUtils
#from Bio.SeqUtils.CodonUsage import CodonAdaptationIndex
from Bio.SeqUtils import GC
from Bio.SeqUtils.CodonUsage import SynonymousCodons
import math
from math impo... | gpl-3.0 |
ndingwall/scikit-learn | sklearn/metrics/tests/test_common.py | 1 | 58074 |
from functools import partial
from inspect import signature
from itertools import product
from itertools import chain
from itertools import permutations
import numpy as np
import scipy.sparse as sp
import pytest
from sklearn.datasets import make_multilabel_classification
from sklearn.preprocessing import LabelBinar... | bsd-3-clause |
harisbal/pandas | pandas/tests/util/test_testing.py | 1 | 34998 | # -*- coding: utf-8 -*-
import os
import sys
import textwrap
import numpy as np
import pytest
import pandas.util._test_decorators as td
import pandas as pd
from pandas import DataFrame, Series, compat
import pandas.util.testing as tm
from pandas.util.testing import (
RNGContext, assert_almost_equal, assert_frame... | bsd-3-clause |
Robozor-network/AROM | src/drivers/mount_old.py | 1 | 40973 | #!/usr/bin/env python
import math
import time
import rospy
import std_msgs
import actionlib
#import pandas
import numpy as np
from std_msgs.msg import String
from std_msgs.msg import Float32
from arom.srv import *
from arom.msg import *
import arom
import serial
import json
from astropy import units as u
from astropy.c... | gpl-3.0 |
vdods/vorpy | vorpy/integration/adaptive.py | 1 | 44528 | """
Adaptive integrator(s) that control the error on specified quantities by varying the integration timestep.
"""
import abc
import enum
import itertools
import numpy as np
import typing
import vorpy.integration.rungekutta
"""
Design notes
- The goal is to keep the global error on each quantity within a certain ba... | mit |
bobbymckinney/seebeck_measurement | program_hightemp/Seebeck_HighTemp_CMDLine.py | 1 | 32012 | #! /usr/bin/python
# -*- coding: utf-8 -*-
"""
Created: 2016-02-09
@author: Bobby McKinney (bobbymckinney@gmail.com)
"""
import os
import numpy as np
import matplotlib.pyplot as plt
import minimalmodbus as modbus # For communicating with the cn7500s
import omegacn7500 # Driver for cn7500s under minimalmodbus, adds a fe... | gpl-3.0 |
EMS-TU-Ilmenau/fastmat | bee.py | 1 | 41700 | # -*- coding: utf-8 -*-
# Copyright 2018 Sebastian Semper, Christoph Wagner
# https://www.tu-ilmenau.de/it-ems/
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/lice... | apache-2.0 |
bobbypaton/GoodVibes | goodvibes/pes.py | 1 | 48976 | # -*- coding: utf-8 -*-
from __future__ import print_function, absolute_import
import math, os.path, sys
import numpy as np
# PHYSICAL CONSTANTS UNITS
GAS_CONSTANT = 8.3144621 # J / K / mol
J_TO_AU = 4.184 * 627.509541 * 1000.0 # UNIT CONVERSION
KCAL_TO_AU = 627.509541 # UNIT C... | mit |
johnmgregoire/NanoCalorimetry | PnSC_SCui.py | 1 | 104591 | import time
import os, os.path
import sys
import numpy
import h5py
from PyQt4.QtCore import *
from PyQt4.QtGui import *
import operator
import matplotlib
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.backends.backend_qt4agg import NavigationToolbar2QTAgg as NavigationT... | bsd-3-clause |
rubdos/npTDMS | nptdms/tdms.py | 1 | 32500 | """Python module for reading TDMS files produced by LabView"""
import itertools
import logging
import struct
import sys
from collections import namedtuple
try:
from collections import OrderedDict
except ImportError:
try:
# ordereddict available on pypi for Python < 2.7
from ordereddict import O... | lgpl-3.0 |
bicv/SLIP | SLIP/SLIP.py | 1 | 34612 | # -*- coding: utf8 -*-
from __future__ import (absolute_import, division, print_function, unicode_literals)
"""
SLIP: a Simple Library for Image Processing.
See http://pythonhosted.org/SLIP
"""
import numpy as np
def imread(URL, grayscale=True, rgb2gray=[0.2989, 0.5870, 0.1140]):
"""
Loads whatever image. Re... | gpl-2.0 |
LeeKamentsky/CellProfiler | cellprofiler/gui/cpfigure.py | 1 | 91507 | """ cpfigure.py - provides a frame with a figure inside
CellProfiler is distributed under the GNU General Public License.
See the accompanying file LICENSE for details.
Copyright (c) 2003-2009 Massachusetts Institute of Technology
Copyright (c) 2009-2015 Broad Institute
All rights reserved.
Please see the AUTHORS fi... | gpl-2.0 |
amaurywalbert/twitter | evaluation/without_ground_truth/chens_metrics/plot_metrics.py | 2 | 37043 | # -*- coding: latin1 -*-
################################################################################################
import datetime, sys, time, json, os, os.path, shutil, time, struct, random, math
import matplotlib.pyplot as plt
import matplotlib.mlab as mlab
import pylab
import numpy as np
from math import*
imp... | gpl-3.0 |
jucares/lisn_utils | lisn_utils/plotter.py | 1 | 32708 | # -*- coding: utf-8 -*-
'''
Utilities to plot gps data
@author: Juan C. Espinoza
@contact: jucar.espinoza@gmail.com
'''
__version__ = 1.0
import os, time
import numpy as np
from StringIO import StringIO
from pkg_resources import resource_string
import utility as utl
import gps
from gpsdatetime import GPSDateTime, t... | gpl-3.0 |
Leoniela/nipype | nipype/pipeline/utils.py | 1 | 46554 | # emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""Utility routines for workflow graphs
"""
from copy import deepcopy
from glob import glob
from collections import defaultdict
import os
import pwd
import re
from uuid import uuid1
import numpy as np
fro... | bsd-3-clause |
bjackman/trappy | trappy/ftrace.py | 1 | 32552 | # Copyright 2015-2017 ARM Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in w... | apache-2.0 |
fred3m/toyz | toyz/web/tasks.py | 1 | 30883 | # Job tasks sent from web client
# Copyright 2015 by Fred Moolekamp
# License: BSD 3-clause
"""
While each toy may contain a large number of functions, only the functions located in the
``tasks.py`` file will be callable from the job queue.
"""
from __future__ import print_function, division
import importlib
import os... | bsd-3-clause |
jepegit/cellpy | cellpy/utils/helpers.py | 1 | 32102 | import os
import logging
import pathlib
import warnings
import collections
from copy import deepcopy
import numpy as np
import pandas as pd
from scipy import stats
import cellpy
from cellpy import prms
from cellpy.parameters.internal_settings import (
get_headers_summary,
get_headers_step_table,
get_heade... | mit |
b-carter/numpy | numpy/linalg/linalg.py | 1 | 77776 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | bsd-3-clause |
zak-k/cis | cis/test/plot_tests/test_plotting.py | 1 | 35398 | """
Module to do integration tests of plots, checking that the outputs look right.
"""
from cis.cis_main import plot_cmd
from cis.parse import parse_args
from cis.test.integration_test_data import *
from cis.test.integration.base_integration_test import BaseIntegrationTest
from cis.data_io.products.AProduct import Prod... | gpl-3.0 |
omeed-maghzian/mtag | ldsc_mod/ldsc.py | 1 | 30790 | #!/usr/bin/env python
'''
(c) 2014 Brendan Bulik-Sullivan and Hilary Finucane
LDSC is a command line tool for estimating
1. LD Score
2. heritability / partitioned heritability
3. genetic covariance / correlation
'''
from __future__ import division
import ldscore.ldscore as ld
import ldscore.parse as ps
im... | gpl-3.0 |
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