Datasets:

plantcad
/

genecad-dev

pretty_name: GeneCAD Development Data
license: other
task_categories:
  - token-classification
  - text-generation
tags:
  - genomics
  - gene-prediction
  - plants
  - animals

GeneCAD Development Data

This dataset contains FASTA genome sequence files and GFF/GFF3 annotation files used for GeneCAD development, plus GeneCAD prediction outputs.

data/plant/: plant FASTA and GFF files for training, full-genome evaluation inputs, and examples.
data/animal/: animal FASTA and GFF files for training and evaluation.
data/plant/fasta/evaluation_full/ and data/plant/gff/evaluation_full/: full-genome plant FASTA/GFF inputs corresponding to the plant prediction outputs.
predictions/prediction_genecad_emarro_5species/: GeneCAD prediction FASTA/GFF outputs from the 5-species run.
predictions/prediction_genecad_emarro_10species/Arabidopsis/: Arabidopsis prediction GFF outputs from the 10-species run.
prediction_files.csv: an index of the added prediction FASTA/GFF files with species, region, size, and repository path.

Only FASTA and GFF-style files are included for the prediction results. Pipeline intermediates, BUSCO evaluation outputs, checkpoints, Zarr arrays, BigWig tracks, logs, and other generated artifacts are intentionally excluded.

GeneCAD Development Data

Contents