| pretty_name: GeneCAD Development Data | |
| license: other | |
| task_categories: | |
| - token-classification | |
| - text-generation | |
| tags: | |
| - genomics | |
| - gene-prediction | |
| - plants | |
| - animals | |
| # GeneCAD Development Data | |
| This dataset contains FASTA genome sequence files and GFF/GFF3 annotation files used for GeneCAD development, plus GeneCAD prediction outputs. | |
| ## Contents | |
| - `data/plant/`: plant FASTA and GFF files for training, full-genome evaluation inputs, and examples. | |
| - `data/animal/`: animal FASTA and GFF files for training and evaluation. | |
| - `data/plant/fasta/evaluation_full/` and `data/plant/gff/evaluation_full/`: full-genome plant FASTA/GFF inputs corresponding to the plant prediction outputs. | |
| - `predictions/prediction_genecad_emarro_5species/`: GeneCAD prediction FASTA/GFF outputs from the 5-species run. | |
| - `predictions/prediction_genecad_emarro_10species/Arabidopsis/`: Arabidopsis prediction GFF outputs from the 10-species run. | |
| - `prediction_files.csv`: an index of the added prediction FASTA/GFF files with species, region, size, and repository path. | |
| Only FASTA and GFF-style files are included for the prediction results. Pipeline intermediates, BUSCO evaluation outputs, checkpoints, Zarr arrays, BigWig tracks, logs, and other generated artifacts are intentionally excluded. | |