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wiki_9800_chunk_0 | DyP-type peroxidase family | However, the DyP family exhibits only low sequence similarity to classical fungal peroxidases, such as LiP and MnP, and does not contain the conserved proximal and distal histidines and an essential arginine found in other plant peroxidase superfamily members. DyP proteins have several characteristics that distinguish ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9801_chunk_0 | DyP-type peroxidase family | A conserved Asp most likely acts as a proton donor/acceptor and takes the place of the catalytic histidine used by plant peroxidases. This Asp substitution helps explain why the DyP family is active at low pH. == References == | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9802_chunk_0 | Dymeclin protein family | In molecular biology, the Dymeclin protein family is a family of proteins which includes human Dymeclin. Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 amino acids long and pre... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9803_chunk_0 | Dymeclin protein family | It contains up to seven potential transmembrane domains separated by regions of low complexity. Functionally this protein might be involved in vesicle secretion or be an inter-cellular signalling protein or be a novel insulin receptor. == References == | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9804_chunk_0 | EAL domain | In molecular biology, the EAL domain is a conserved protein domain. It is found in diverse bacterial signalling proteins. It is named EAL after its conserved residues. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9805_chunk_0 | EAL domain | The EAL domain may function as a diguanylate phosphodiesterase. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. == References == | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9806_chunk_0 | EF1 guanine nucleotide exchange domain | In molecular biology, the EF1 guanine nucleotide exchange domain is a protein domain found in the beta and delta chains of elongation factors from eukaryotes and archaea. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its ina... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9807_chunk_0 | ELFV dehydrogenase | In molecular biology, the ELFV dehydrogenase family of enzymes include glutamate, leucine, phenylalanine and valine dehydrogenases. These enzymes are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each cas... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9808_chunk_0 | ELFV dehydrogenase | GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction - this form links... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9809_chunk_0 | ELFV dehydrogenase | The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase EC 1.4.1.20 (PheDH) is an NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate.Valine dehy... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9810_chunk_0 | EMI domain | In molecular biology, the EMI domain, first named after its presence in proteins of the EMILIN family, is a small cysteine-rich protein domain of around 75 amino acids. The EMI domain is most often found at the N terminus of metazoan extracellular proteins that are forming or are compatible with multimer formation. It ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9811_chunk_0 | EMI domain | Other key features of the EMI domain are the C-C-x-G- pattern, a hydrophobic position just preceding the first cysteine (Cys1) of the domain and a cluster of hydrophobic residues between Cys3 and Cys4. The EMI domain could be made of two sub-domains, the fold of the second one sharing similarities with the C-terminal s... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9812_chunk_0 | EMI domain | Vertebrate Emu proteins, which could interact with several different extracellular matrix components and serve to connect and integrate the function of multiple partner molecules. Vertebrate beta-IG-H3. Vertebrate osteoblast-specific factor 2 (OSF-2). | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9813_chunk_0 | EMI domain | Mammalian NEU1/NG3 proteins. Drosophila midline fasciclin. Caenorhabditis elegans ced-1, a transmembrane receptor that mediates cell corpse engulfment. == References == | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9814_chunk_0 | EcoEI R protein C-terminal domain | In molecular biology, the EcoEI R protein C-terminal domain is a protein domain found at the C-terminus of both the R subunit of type I restriction enzymes and the Res subunit of type III restriction enzymes. The type I enzymes include EcoEI, which recognises 5'-GAGN(7)ATGC-3; the R protein (HsdR) is required for both ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9815_chunk_0 | F-actin capping protein | In molecular biology, the F-actin capping protein is a protein complex which binds in a calcium-independent manner to the fast-growing ends of actin filaments (barbed end), thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin cappi... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9816_chunk_0 | F-actin capping protein | Neither of the subunits shows sequence similarity to other filament-capping proteins. The alpha subunit is a protein of about 268 to 286 amino acid residues and the beta subunit is approximately 280 amino acids, their sequences are well conserved in eukaryotic species.The actin filament system, a prominent part of the ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9817_chunk_0 | FAD dependent oxidoreductase family | In molecular biology, the FAD dependent oxidoreductase family of proteins is a family of FAD dependent oxidoreductases. Members of this family include Glycerol-3-phosphate dehydrogenase EC 1.1.99.5, Sarcosine oxidase beta subunit EC 1.5.3.1, D-amino-acid dehydrogenase EC 1.4.99.1, D-aspartate oxidase EC 1.4.3.1. D-amin... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9818_chunk_0 | FAD dependent oxidoreductase family | DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase EC 1.4.3.1 (DASOX) is an enzyme, structurally related to DAO, which catalyses the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidi... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9819_chunk_0 | FERM domain | In molecular biology, the FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface betwe... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9820_chunk_0 | FEZ-like protein | In molecular biology, the FEZ-like protein family is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic. The Caenorhabditis elegans homologue, UNC-76, may play struc... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9821_chunk_0 | FHIPEP protein family | In molecular biology, the FHIPEP protein family (Flagellar/Hr/Invasion Proteins Export Pore family)consists of a number of proteins that constitute the type III secretion (or signal peptide-independent) pathway apparatus. This mechanism translocates proteins lacking an N-terminal signal peptide across the cell membrane... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9822_chunk_0 | FHIPEP protein family | An FHIPEP protein is located within the inner membrane, although it is unknown which component it constitutes. FHIPEP proteins have all about 700 amino acid residues. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9823_chunk_0 | FLYWCH zinc finger | In molecular biology, the FLYWCH zinc finger is a zinc finger domain. It is found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any ami... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9824_chunk_0 | FLYWCH zinc finger | This domain was first characterised in Drosophila modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs. The ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9825_chunk_0 | Fic/DOC protein family | In molecular biology, the Fic/DOC protein family is a family of proteins which catalyzes the post-translational modification of proteins using phosphate-containing compound as a substrate. Fic domain proteins typically use ATP as a co-factor, but in some cases GTP or UTP is used. Post-translational modification perform... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9826_chunk_0 | GA module | In molecular biology, the GA module, or protein G-related albumin-binding module, is a protein domain which occurs on the surface of numerous Gram-positive bacterial pathogens. Protein G of group C and G Streptococci interacts with the constant region of IgG and with human serum albumin. The GA module is composed of a ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9827_chunk_0 | GA module | Variations in sequence give rise to differences in structure and function between GA modules in different proteins, which could alter pathogenesis and host specificity due to their varied affinities for different species of albumin. Proteins containing a GA module include PAB from Peptostreptococcus magnus. == Referenc... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9828_chunk_0 | GCM transcription factors | In molecular biology, the GCM transcription factors are a family of proteins which contain a GCM motif. The GCM motif is a domain that has been identified in proteins belonging to a family of transcriptional regulators involved in fundamental developmental processes which comprise Drosophila melanogaster GCM and its ma... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9829_chunk_0 | GCM transcription factors | In contrast, the C-terminal moiety contains one or two transactivating regions and is only poorly conserved. The GCM motif has been shown to be a DNA binding domain that recognises preferentially the nonpalindromic octamer 5'-ATGCGGGT-3'. The GCM motif contains many conserved basic amino acid residues, seven cysteine r... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9830_chunk_0 | GCM transcription factors | The conserved cysteines are involved in shaping the overall conformation of the domain, in the process of DNA binding and in the redox regulation of DNA binding. The GCM domain as a new class of Zn-containing DNA-binding domain with no similarity to any other DNA-binding domain. The GCM domain consists of a large and a... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9831_chunk_0 | GCM transcription factors | The large and the small domains comprise five- and three-stranded beta-sheets, respectively, with three small helical segments packed against the same side of the two beta-sheets. The GCM domain exercises a novel mode of sequence-specific DNA recognition, where the five-stranded beta-pleated sheet inserts into the majo... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9832_chunk_0 | GGDEF domain | In molecular biology, the GGDEF domain is a protein domain which appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to act as a diguanylate cyclase and synthesize cyclic di-GMP, which is used as an intracellular s... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9833_chunk_0 | GGDEF domain | Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase. == Refere... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9834_chunk_0 | GHMP kinase family | In molecular biology, the GHMP kinase family is a family of kinase enzymes. Members of this family include homoserine kinases EC 2.7.1.39, galactokinases EC 2.7.1.6, and mevalonate kinasesEC 2.7.1.36. These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes. These enzymes are involved in the biosynthe... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9835_chunk_0 | GRIP domain | In molecular biology, the GRIP domain is a conserved protein domain. The GRIP (golgin-97, RanBP2alpha, Imh1p and p230/golgin-245) domain is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi. It contains a completely conserved tyrosine residue. == References == | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9836_chunk_0 | GYF domain | In molecular biology, the GYF domain (glycine-tyrosine-phenylalanine domain) is an approximately 60-amino acid protein domain which contains a conserved GPxxxxxxWxxxYF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR se... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9837_chunk_0 | GYF domain | A GYF domain is also found in several other eukaryotic proteins of unknown function. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a bet... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9838_chunk_0 | GntR-like bacterial transcription factors | In molecular biology, the GntR-like bacterial transcription factors are a family of transcription factors. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9839_chunk_0 | Guanosine nucleotide dissociation inhibitors | In molecular biology, the Guanosine dissociation inhibitors (GDIs) constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic. GDIs bind to the GDP-bound form of Rho and Rab small GTPases and not only prevent exchange (maintaining the small GTPase in an off-state), but also prevent ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9840_chunk_0 | Guanosine nucleotide dissociation inhibitors | The GDIs' C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1. R... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9841_chunk_0 | H2TH domain | In molecular biology, the H2TH domain (helix-2turn-helix domain) is a DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Most damage to bases in DNA is repaired by the base excision repair pathway. These enzymes ar... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9842_chunk_0 | H2TH domain | Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; EC 3.2.2.23) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity;EC 4.2.99.18)... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9843_chunk_0 | H2TH domain | Fpg is a monomer composed of 2 domains connected by a flexible hinge. The two DNA-binding motifs (a zinc finger and the H2TH (helix-two-turns-helix) motifs) suggest that the oxidised base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional bas... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9844_chunk_0 | H2TH domain | These proteins contain three structural domains: an N-terminal catalytic core domain, a central helix-two turn-helix (H2TH) module and a C-terminal zinc finger (see PDB:1K82). The N-terminal catalytic domain and the C-terminal zinc finger straddle the DNA with the long axis of the protein oriented roughly orthogonal to... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9845_chunk_0 | HAMP domain | In molecular biology, the HAMP domain (present in Histidine kinases, Adenylate cyclases, Methyl accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region that forms a dimeric, four-helical coiled coil. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9846_chunk_0 | HAND domain | In molecular biology, the HAND domain is a protein domain which adopts a secondary structure consisting of four alpha helices, three of which (H2, H3, H4) form an L-like configuration. Helix H2 runs antiparallel to helices H3 and H4, packing closely against helix H4, whilst helix H1 reposes in the concave surface forme... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9847_chunk_0 | HAND domain | HAND domain-containing proteins include proteins involved in nucleosome remodelling, an energy-dependent process that alters histone-DNA interactions within nucleosomes, thereby rendering nucleosomal DNA accessible to regulatory factors. The ATPases involved in nucleosome remodelling belong to the SWI2/SNF2 subfamily o... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9848_chunk_0 | HAND domain | The ATPase ISWI is a member of this family. ISWI can be divided into two regions: an N-terminal region that contains the SWI2/SNF2 ATPase domain, and a C-terminal region that is responsible for substrate recognition. The C-terminal region contains 12 alpha-helices and can be divided into three domains and a spacer regi... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9849_chunk_0 | HD domain | In molecular biology, the HD domain is a conserved protein domain, named after the conserved histidine (H) and/or aspartate (D) amino acid residues. It is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in nucleic acid metabolism, signal transdu... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9850_chunk_0 | HECT domain | In molecular biology, the HECT domain is a protein domain found in ubiquitin-protein ligases. The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus'. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accept... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9851_chunk_0 | HEPN domain | In molecular biology, the HEPN domain (higher eukaryotes and prokaryotes nucleotide-binding domain) is a region of approximately 110 amino acids found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archaea proteins. There are three cl... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9852_chunk_0 | HMA domain | In molecular biology, the HMA domain (heavy-metal-associated domain) is a conserved protein domain found in a number of heavy metal transport or detoxification proteins.Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an imp... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9853_chunk_0 | HMG-CoA reductase family | In molecular biology, the HMG-CoA reductase family is a family of enzymes which participate in the mevalonate pathway, the metabolic pathway that produces cholesterol and other isoprenoids. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9854_chunk_0 | HMG-CoA reductase family | The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids. Class I HMG-CoA reductases consist... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9855_chunk_0 | HMG-CoA reductase family | The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-depend... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9856_chunk_0 | HMG-box | In molecular biology, the HMG-box (high mobility group box) is a protein domain which is involved in DNA binding. The domain is composed of approximately 75 amino acid residues that collectively mediate the DNA-binding of chromatin-associated high-mobility group proteins. HMG-boxes are present in many transcription fac... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9857_chunk_0 | HORMA domain | In molecular biology, the HORMA domain (named after the Hop1p, Rev7p and MAD2 proteins) is a protein domain that has been suggested to recognise chromatin states resulting from DNA adducts, double stranded breaks or non-attachment to the spindle and act as an adaptor that recruits other proteins. Hop1 is a meiosis-spec... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9858_chunk_0 | Hsp17 thermometer | In molecular biology, the Hsp17 thermometer is an RNA element (RNA thermometer) found in the 5' UTR of Hsp17 mRNA. Hsp17 is a cyanobacterial heat shock protein belonging to the Hsp20 family.At physiological temperature (28 degrees Celsius) the Hsp17 thermometer forms a hairpin structure, preventing translation of Hsp17... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9859_chunk_0 | IMD domain | In molecular biology, the IMD domain (IRSp53 and MIM (missing in metastases) homology Domain) is a BAR-like domain of approximately 250 amino acids found at the N-terminus in the insulin receptor tyrosine kinase substrate p53 (IRSp53/BAIAP2) and in the evolutionarily related IRSp53/MIM (MTSS1) family. In IRSp53, a ubiq... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9860_chunk_0 | IMD domain | Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature. The IMD domain is also known as the I-BAR ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9861_chunk_0 | IMPDH/GMPR family | In molecular biology, the IMPDH/GMPR family of enzymes includes IMP dehydrogenase and GMP reductase. These enzymes are involved in purine metabolism. These enzymes adopt a TIM barrel structure. == References == | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9862_chunk_0 | KduI/IolB isomerase family | In molecular biology, the KduI/IolB isomerase family is a family of isomerase enzymes that includes 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (5-keto 4-deoxyuronate isomerase) (KduI) and 5-deoxy-glucuronate isomerase (5DG isomerase) (IolB). KduI is involved in pectin degradation by free-living soil bacteria ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9863_chunk_0 | KduI/IolB isomerase family | IolB is involved in myo-inositol catabolism. Glucose repression of the iol operon induced by inositol is exerted through catabolite repression mediated by CcpA and the iol induction system mediated by IolR. Members of this family possess a Cupin like structure. == References == | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9864_chunk_0 | KilA-N domain | In molecular biology, the KilA-N domain is a conserved DNA-binding domain found at the N-terminus of the poxvirus D6R/NIR proteins. It is also found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. Putative proteins with homology to the KilA-N domain have also been identified in Maverick trans... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9865_chunk_0 | LIM domain-binding protein family | In molecular biology, the LIM domain-binding protein family is a family of proteins which binds to the LIM domain of LIM (LIN-11, Isl-1 and MEC-3) homeodomain proteins which are transcriptional regulators of development. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9866_chunk_0 | LisH domain | In molecular biology, the LisH domain (lis homology domain) is a protein domain found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerisation motif,... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9867_chunk_0 | Lon-A peptidase | In molecular biology, the Lon protease family is a family of enzymes that break peptide bonds in proteins resulting in smaller peptides or amino acids. They are found in archaea, bacteria and eukaryotes. Lon proteases are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (Lon protease family,... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9868_chunk_0 | Lon-A peptidase | In the eukaryotes the majority of the Lon proteases are located in the mitochondrial matrix. In yeast, the Lon protease PIM1 is located in the mitochondrial matrix. It is required for mitochondrial function, it is constitutively expressed but is increased after thermal stress, suggesting that PIM1 may play a role in th... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9869_chunk_0 | LuxR-type DNA-binding HTH domain | In molecular biology, the LuxR-type DNA-binding HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids. It is present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing con... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9870_chunk_0 | LuxR-type DNA-binding HTH domain | The DNA-binding HTH domain is usually located in the C-terminal region of the protein; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9871_chunk_0 | LuxR-type DNA-binding HTH domain | The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9872_chunk_0 | LuxR-type DNA-binding HTH domain | The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers.LuxR-type HTH proteins can be activated by one of four different mechanisms: 1. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9873_chunk_0 | LuxR-type DNA-binding HTH domain | Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes i... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9874_chunk_0 | LuxR-type DNA-binding HTH domain | Autonomous effector domain regulators, without a regulatory domain, represented by gerE. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation)4. Multiple ligand-binding regulators, exemplified by malT. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose) == Re... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9875_chunk_0 | Macro domain | In molecular biology, the Macro domain (often also written macrodomain) or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite, or related ligands. Binding to ADP-ribose can be either covalent or non-covalent: in certain cases it is believed to bind non-covalently, while in oth... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9876_chunk_0 | NAD+ Five-prime cap | In molecular biology, the NAD+ five-prime cap (NAD+ 5’ cap) refers to a molecule of nicotinamide adenine dinucleotide (NAD+), a nucleoside-containing metabolite, covalently bonded the 5’ end of cellular mRNA. While the more common methylated guanosine (m7G) cap is added to RNA by a capping complex that associates with ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9877_chunk_0 | NAD+ Five-prime cap | This modification also potentially allows for selective degradation of RNA]within prokaryotes as different pathways are involved in the degradation of NAD+-capped and uncapped 5′-triphosphate-RNAs. In eukaryotic cells, while the more commonly observed m7G cap promotes the stability of the mRNA and supports translation,... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9878_chunk_0 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 7 | In molecular biology, the NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 7 family of proteins (also known as NADH-ubiquinone oxidoreductase subunit B14.5a or Complex I-B14.5a) form a part of NADH dehydrogenase (complex I). In mammals, it is encoded by the NDUFA7 gene. == References == | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9879_chunk_0 | Negative elongation factor | In molecular biology, the NELF (negative elongation factor) is a four-subunit protein complex (NELF-A, NELF-B, NELF-C/NELF-D, and NELF-E) that negatively impacts transcription by RNA polymerase II (Pol II) by pausing about 20-60 nucleotides downstream from the transcription start site (TSS). | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9880_chunk_0 | OmpA domain | In molecular biology, the OmpA domain is a conserved protein domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins, such as porin-like integral membrane proteins (such as ompA), small lipid-anchored proteins (such as pal), and MotB p... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9881_chunk_0 | PRINTS | In molecular biology, the PRINTS database is a collection of so-called "fingerprints": it provides both a detailed annotation resource for protein families, and a diagnostic tool for newly determined sequences. A fingerprint is a group of conserved motifs taken from a multiple sequence alignment - together, the motifs ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9882_chunk_0 | Photoactive yellow protein | In molecular biology, the PYP domain (photoactive yellow protein) is a p-coumaric acid-binding protein domain. They are present in various proteins in bacteria. PYP is a highly soluble globular protein with an alpha/beta fold structure. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9883_chunk_0 | Photoactive yellow protein | It is a member of the PAS domain superfamily, which also contains a variety of other kinds of photosensory proteins. PYP was first discovered in 1985.A recently (2016) developed chemogenetic system named FAST (Fluorescence-Activating and absorption Shifting Tag) was engineered from PYP to specifically and reversibly bi... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9884_chunk_0 | Ycf9 protein domain | In molecular biology, the PsbZ (Ycf9) is a protein domain, which is low in molecular weight. It is a transmembrane protein and therefore is located in the thylakoid membrane of chloroplasts in cyanobacteria and plants. More specifically, it is located in Photosystem II (PSII) and in the light-harvesting complex II (LHC... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9885_chunk_0 | RNase E 5′ UTR element | In molecular biology, the RNase E 5′ UTR element is a cis-acting element located in the 5′ UTR of ribonuclease (RNase) E messenger RNA (mRNA). RNase E is a key regulatory enzyme in the pathway of mRNA degradation in Escherichia coli. It is able to auto-regulate the degradation of its own mRNA in response to changes in ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9886_chunk_0 | SAG1 protein domain | In molecular biology, the SAG1 protein domain is an example of a group of glycosylphosphatidylinositol (GPI)-linked proteins named SRSs (SAG1 related sequence). SAG1 is found on the surface of a protozoan parasite Toxoplasma gondii. This parasite infects almost any warm-blooded vertebrate. The surface of T. gondii is c... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9887_chunk_0 | SR1 RNA | In molecular biology, the SR1 RNA is a small RNA (sRNA) produced by species of Bacillus and closely related bacteria. It is a dual-function RNA which acts both as a protein-coding RNA and as a regulatory sRNA. SR1 RNA is involved in the regulation of arginine catabolism. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9888_chunk_0 | SR1 RNA | SR1 RNA binds to complementary stretches of ahrC mRNA (also known as argR and inhibits translation. AhrC endodes an arginine repressor protein which represses synthesis of arginine biosynthetic enzymes and activates arginine catabolic enzymes via regulation of the rocABC and rocDEF operons.In addition to acting as a sR... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9889_chunk_0 | Shroom protein family | In molecular biology, the Shroom protein family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic a... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9890_chunk_0 | Shroom protein family | In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina b... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9891_chunk_0 | Shroom protein family | It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif.Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9892_chunk_0 | Signal peptide peptidase | In molecular biology, the Signal Peptide Peptidase (SPP) is a type of protein that specifically cleaves parts of other proteins. It is an intramembrane aspartyl protease with the conserved active site motifs 'YD' and 'GxGD' in adjacent transmembrane domains (TMDs). Its sequences is highly conserved in different vertebr... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9893_chunk_0 | Small nucleolar RNA J26 | In molecular biology, the Small nucleolar RNA J26 is a non-coding RNA (ncRNA) molecule identified in rice (Oryza sativa) which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenes... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9894_chunk_0 | Small nucleolar RNA J33 | In molecular biology, the Small nucleolar RNA J33 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleol... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9895_chunk_0 | Small nucleolar RNA J33 | snoRNA J33 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. Plant snoRNA J33 was identified in a screen of Oryza sativa. | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9896_chunk_0 | Small nucleolar RNA MBI-1 | In molecular biology, the Small nucleolar RNA MBI-1 is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small ... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9897_chunk_0 | Small nucleolar RNA MBI-161 | In molecular biology, the Small nucleolar RNA MBI-161 is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a smal... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9898_chunk_0 | Small nucleolar RNA Me18S-Gm1358 | In molecular biology, the Small nucleolar RNA Me18S-Gm1358 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a smal... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
wiki_9899_chunk_0 | Small nucleolar RNA Me18S-Gm1358 | snoRNA Me18S-Gm1358 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methyl... | https://www.kaggle.com/datasets/conjuring92/wiki-stem-corpus |
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