metadata
license: cc-by-4.0
configs:
- config_name: cells
data_files: cells/cells.parquet
- config_name: proteins
data_files: proteins/proteins.parquet
BioReason-Cell-Contextual-Data
Context tables for human cell lines and proteins, for the BioReason Cell project.
cells
14 human cell lines.
| column | description |
|---|---|
cell_type |
cell line name |
description |
origin, driver mutations, signaling state and post-transcriptional regulatory context of the cell line |
proteins
101 proteins.
| column | description |
|---|---|
protein |
gene symbol |
protein_name |
UniProt protein name |
uniprot_id |
UniProt accession |
functional_roles |
mRNA stabilizer, mRNA destabilizer, splicing factor, localization factor, or uncharacterized |
protein_function |
function summary focused on mRNA regulation |
mirna_crosstalk_roles |
competitive protectors, cooperative enhancers, miRNA biogenesis, miRNA biogenesis inhibitors, ago associated |
domains |
protein domains |
subcellular_location |
subcellular locations |
interacting_proteins |
interacting proteins from this table |
License
CC BY 4.0