| license: cc-by-4.0 | |
| configs: | |
| - config_name: cells | |
| data_files: cells/cells.parquet | |
| - config_name: proteins | |
| data_files: proteins/proteins.parquet | |
| # BioReason-Cell-Contextual-Data | |
| Context tables for human cell lines and proteins, for the BioReason Cell project. | |
| ## `cells` | |
| 14 human cell lines. | |
| | column | description | | |
| |---|---| | |
| | `cell_type` | cell line name | | |
| | `description` | origin, driver mutations, signaling state and post-transcriptional regulatory context of the cell line | | |
| ## `proteins` | |
| 101 proteins. | |
| | column | description | | |
| |---|---| | |
| | `protein` | gene symbol | | |
| | `protein_name` | UniProt protein name | | |
| | `uniprot_id` | UniProt accession | | |
| | `functional_roles` | mRNA stabilizer, mRNA destabilizer, splicing factor, localization factor, or uncharacterized | | |
| | `protein_function` | function summary focused on mRNA regulation | | |
| | `mirna_crosstalk_roles` | competitive protectors, cooperative enhancers, miRNA biogenesis, miRNA biogenesis inhibitors, ago associated | | |
| | `domains` | protein domains | | |
| | `subcellular_location` | subcellular locations | | |
| | `interacting_proteins` | interacting proteins from this table | | |
| ## License | |
| CC BY 4.0 | |