| --- |
| language: |
| - en |
| tags: |
| - clinicalcode |
| - medical-imaging |
| - segmentation |
| - ct |
| - mri |
| license: other |
| license_name: per-artifact-licenses |
| license_link: https://huggingface.co/qicq1c/ClinicalCode#licenses |
| --- |
| |
| # ClinicalCode |
|
|
| Checkpoints for **Animating the Clinical Source Code of Disease Progression for Medical World Models**. |
|
|
| [Project page](https://qic999.github.io/projects/ClinicalCode/) · [Code and commands](https://github.com/qic999/ClinicalCode) |
|
|
| ## Checkpoints |
|
|
| | File | Function | Source | |
| | --- | --- | --- | |
| | [difftumor_hcc_fold0.pt](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/difftumor_hcc_fold0.pt) | CT tumor segmentation within a supplied liver mask | HCC fold-0 DynUNet used in our experiments, based on [DiffTumor](https://github.com/MrGiovanni/DiffTumor) / [MeWM](https://github.com/scott-yjyang/MeWM) | |
| | [ct_decoder.freeze.json](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/ct_decoder.freeze.json) | CT treatment-action decoding | ClinicalCode frozen Lingshu-I-8B decoder; identical to the decoder bundled with the public CT case | |
| | [Raidionics-MRI_TumorCE_Postop-v13.zip](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/Raidionics-MRI_TumorCE_Postop-v13.zip) | MRI enhancing-tumor segmentation | Unmodified [Raidionics v1.3 archive](https://github.com/raidionics/Raidionics-models/releases/download/v1.3.0-rc/Raidionics-MRI_TumorCE_Postop-v13.zip) | |
| | [Raidionics-MRI_Cavity-v13.zip](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/Raidionics-MRI_Cavity-v13.zip) | MRI resection-cavity segmentation | Unmodified [Raidionics v1.3 archive](https://github.com/raidionics/Raidionics-models/releases/download/v1.3.0-rc/Raidionics-MRI_Cavity-v13.zip) | |
|
|
| ## Download |
|
|
| ```bash |
| python -m pip install huggingface_hub |
| hf download qicq1c/ClinicalCode difftumor_hcc_fold0.pt --local-dir models/difftumor |
| hf download qicq1c/ClinicalCode ct_decoder.freeze.json --local-dir models/decoder |
| hf download qicq1c/ClinicalCode \ |
| Raidionics-MRI_TumorCE_Postop-v13.zip Raidionics-MRI_Cavity-v13.zip \ |
| --local-dir models/raidionics/archives |
| unzip -q models/raidionics/archives/Raidionics-MRI_TumorCE_Postop-v13.zip -d models/raidionics |
| unzip -q models/raidionics/archives/Raidionics-MRI_Cavity-v13.zip -d models/raidionics |
| ``` |
|
|
| File hashes are recorded in [SHA256SUMS](https://huggingface.co/qicq1c/ClinicalCode/blob/main/SHA256SUMS). The frozen language models are available from their original Hugging Face repositories, including [Lingshu-I-8B](https://huggingface.co/lingshu-medical-mllm/Lingshu-I-8B). |
|
|
| ## Licenses |
|
|
| - ClinicalCode decoder: [MIT](https://huggingface.co/qicq1c/ClinicalCode/blob/main/LICENSE-ClinicalCode). |
| - HCC DynUNet checkpoint: retained with the [MeWM CC BY-NC 4.0 license](https://huggingface.co/qicq1c/ClinicalCode/blob/main/LICENSE-MeWM.md). Original [MeWM license](https://github.com/scott-yjyang/MeWM/blob/63bb931102254cb81dcd6ee6bdd86eeedeccf9d3/LICENSE.md). |
| - Raidionics model archives: [BSD-2-Clause](https://huggingface.co/qicq1c/ClinicalCode/blob/main/LICENSE-Raidionics), copyright David Bouget. Original [model repository](https://github.com/raidionics/Raidionics-models). |
|
|
| ## Citation |
|
|
| ```bibtex |
| @misc{chen2026clinicalcode, |
| title = {Animating the Clinical Source Code of Disease Progression for Medical World Models}, |
| author = {Chen, Qi and Yuille, Alan L. and Chen, Jieneng}, |
| year = {2026}, |
| url = {https://github.com/qic999/ClinicalCode} |
| } |
| ``` |
|
|
