Spaces:
Sleeping
Sleeping
File size: 11,214 Bytes
65ab7ab b383602 65ab7ab b383602 65ab7ab b383602 48b3884 b383602 65ab7ab 9ae30e6 b383602 4c814c5 65ab7ab 4c814c5 9ae30e6 65ab7ab b383602 65ab7ab 48b3884 1063b82 48b3884 1063b82 4c814c5 1063b82 65ab7ab 1063b82 9ae30e6 48b3884 b383602 4c814c5 48b3884 a84b21c 4c814c5 a84b21c 4c814c5 b383602 48b3884 1063b82 48b3884 1063b82 48b3884 1063b82 48b3884 1063b82 48b3884 1063b82 4c814c5 1063b82 4c814c5 1063b82 65ab7ab 48b3884 1063b82 48b3884 1063b82 48b3884 dda6312 4c814c5 65ab7ab 1063b82 9ae30e6 48b3884 1063b82 65ab7ab 4c814c5 dda6312 65ab7ab dda6312 65ab7ab dda6312 65ab7ab dda6312 65ab7ab dda6312 65ab7ab dda6312 1063b82 4c814c5 1063b82 ca67a6f 65ab7ab 4c814c5 dda6312 65ab7ab 4c814c5 48b3884 4c814c5 1063b82 4c814c5 65ab7ab 4c814c5 48b3884 65ab7ab 48b3884 1063b82 48b3884 b383602 4f56e85 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 |
# app.py (Definitive Final Version)
import gradio as gr
from pathlib import Path
import asyncio
from PIL import Image
# Import backend components
from app.prediction import PredictionPipeline
from app.database import add_patient_record, get_all_records
# --- Initialization ---
prediction_pipeline = PredictionPipeline()
# Point to the locally cloned sample images directory from setup.sh
SAMPLE_IMAGE_DIR = Path("sample_images")
try:
if SAMPLE_IMAGE_DIR.is_dir():
SAMPLE_IMAGES = [str(p) for p in sorted(list(SAMPLE_IMAGE_DIR.glob('*/*.jpeg')))]
if not SAMPLE_IMAGES: raise FileNotFoundError
else:
raise FileNotFoundError
except FileNotFoundError:
print("Warning: 'sample_images' directory not found or empty. Please check setup.sh. Samples will be unavailable.")
SAMPLE_IMAGES = []
# --- Core Logic Functions ---
async def process_analysis(patient_name, patient_age, image_list, is_sample=False):
if not is_sample and (not patient_name or patient_age is None):
raise gr.Error("Patient Name and Age are required.")
if not image_list:
raise gr.Error("At least one image is required.")
result = prediction_pipeline.predict(image_list)
if "error" in result:
raise gr.Error(result.get("details", result["error"]))
final_pred = result["final_prediction"]
final_conf = result["final_confidence"]
if not is_sample:
await add_patient_record(str(patient_name), int(patient_age), final_pred, final_conf)
confidences = {"NORMAL": 0.0, "PNEUMONIA": 0.0}
confidences[final_pred] = final_conf
confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
return [
gr.update(visible=False),
gr.update(visible=True),
gr.update(value=result["watermarked_images"]),
gr.update(value=confidences)
]
async def refresh_history_table():
records = await get_all_records()
data_for_df = []
if records:
data_for_df = [[r.get('name'), r.get('age'), r.get('prediction_result'), f"{r.get('confidence_score', 0):.2%}", r.get('timestamp').strftime('%Y-%m-%d %H:%M')] for r in records]
return gr.update(value=data_for_df)
# --- Gradio UI Definition ---
css = """
/* --- Professional Dark Theme & Fonts --- */
:root { --primary-hue: 220 !important; --secondary-hue: 210 !important; --neutral-hue: 210 !important; --body-background-fill: #111827 !important; --block-background-fill: #1F2937 !important; --block-border-width: 1px !important; --border-color-accent: #374151 !important; --background-fill-secondary: #1F2937 !important;}
/* --- Header & Title Styling --- */
#app_header { text-align: center; }
#app_title { font-size: 2.8rem !important; font-weight: 700 !important; color: #FFFFFF !important; padding-top: 1rem; }
#app_subtitle { font-size: 1.2rem !important; color: #9CA3AF !important; margin-bottom: 2rem; }
/* --- Layout, Spacing, and Component Styling --- */
#main_container { gap: 2rem; }
#results_gallery .gallery-item { padding: 0.25rem !important; background-color: #374151; border: 1px solid #374151 !important; }
#bottom_controls { max-width: 600px; margin: 2.5rem auto 1rem auto; }
#bottom_controls .gr-accordion > .gr-block-label { text-align: center !important; display: block !important; }
/* --- Sample Gallery Selection Styling --- */
#sample_gallery .gallery-item { box-shadow: 0 0 5px rgba(0,0,0,0.5); border-radius: 8px !important; border: 4px solid transparent; transition: border-color 0.3s ease; }
#sample_gallery .gallery-item.selected { border-color: var(--primary-500) !important; }
"""
with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue"), css=css, title="Pneumonia Detection AI") as demo:
with gr.Column() as main_app:
with gr.Column(elem_id="app_header"):
gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
gr.Markdown("An AI-powered tool to assist in the diagnosis of pneumonia.", elem_id="app_subtitle")
with gr.Row(elem_id="main_container"):
with gr.Column(scale=1) as uploader_column:
gr.Markdown("### Upload Patient X-Rays")
image_input = gr.File(label="Upload up to 3 Images", file_count="multiple", file_types=["image"], type="filepath")
with gr.Column(scale=2, visible=False) as results_column:
gr.Markdown("### Analysis Results")
result_images = gr.Gallery(label="Analyzed Images", columns=3, object_fit="contain", height=350, elem_id="results_gallery")
result_label = gr.Label(label="Overall Prediction", num_top_classes=2)
start_over_btn = gr.Button("Start New Analysis", variant="secondary")
with gr.Group(visible=False) as patient_info_modal:
gr.Markdown("## Enter Patient Details", elem_classes="text-center")
patient_name_modal = gr.Textbox(label="Patient Name", placeholder="e.g., John Doe")
patient_age_modal = gr.Number(label="Patient Age", minimum=0, maximum=120, step=1)
with gr.Row():
submit_analysis_btn = gr.Button("Analyze Images", variant="primary")
cancel_btn = gr.Button("Cancel", variant="stop")
with gr.Column(elem_id="bottom_controls"):
with gr.Accordion("About this Tool", open=False):
gr.Markdown(
"""
### MLOps-Powered Pneumonia Detection
This application demonstrates a complete, end-to-end MLOps pipeline for medical image classification. It leverages a state-of-the-art **Vision Transformer (ViT)** model, fine-tuned on a public dataset of chest X-ray images to distinguish between Normal and Pneumonia cases.
**Disclaimer:** This tool is for demonstration and educational purposes only and is **not a substitute for professional medical advice.**
---
**Project Team:**
* **Alyyan Ahmed** - Lead ML Engineer & Developer
* **Munim Akbar** - Project Contributor & Reviewer
"""
)
with gr.Row():
samples_btn = gr.Button("Try Sample Images")
history_btn = gr.Button("View Patient History")
with gr.Column(visible=False) as history_page:
gr.Markdown("# 📜 Patient Record History", elem_classes="app_title")
with gr.Row():
back_to_main_btn_hist = gr.Button("⬅️ Back to Main App")
refresh_history_btn = gr.Button("Refresh History")
history_df = gr.DataFrame(headers=["Name", "Age", "Prediction", "Confidence", "Date"], row_count=10, interactive=False)
with gr.Column(visible=False) as samples_page:
gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
gr.Markdown("Select up to 3 images by clicking on them, then click 'Analyze'.")
sample_gallery = gr.Gallery(value=SAMPLE_IMAGES, label="Sample Images", columns=5, height=400, elem_id="sample_gallery")
selected_samples_textbox = gr.Textbox(visible=False, elem_id="selected_samples_textbox")
with gr.Row():
analyze_samples_btn = gr.Button("Analyze Selected Samples", variant="primary")
back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
# --- Event Handling Logic ---
def show_patient_info(files): return gr.update(visible=True) if files else gr.update(visible=False)
image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
async def submit_and_hide_modal(name, age, files):
analysis_results = await process_analysis(name, age, files)
return [*analysis_results, gr.update(visible=False)]
submit_analysis_btn.click(fn=submit_and_hide_modal, inputs=[patient_name_modal, patient_age_modal, image_input], outputs=[uploader_column, results_column, result_images, result_label, patient_info_modal])
cancel_btn.click(lambda: (gr.update(visible=False), None), None, [patient_info_modal, image_input])
start_over_btn.click(fn=None, js="() => { window.location.reload(); }")
# --- Sample Page Logic with JavaScript ---
select_js = """
(evt) => {
const gallery = document.querySelector('#sample_gallery .grid-container');
const clicked_container = gallery.children[evt.index];
const hidden_input = document.querySelector('#selected_samples_textbox textarea');
let selections = hidden_input.value ? hidden_input.value.split(',').filter(p => p.trim()) : [];
const path = clicked_container.querySelector('img').alt;
if (clicked_container.classList.contains('selected')) {
clicked_container.classList.remove('selected');
selections = selections.filter(p => p !== path);
} else {
if (selections.length < 3) {
clicked_container.classList.add('selected');
selections.push(path);
} else {
alert("Maximum of 3 images can be selected.");
}
}
return [selections.join(',')]; // Return value must be a list/tuple for Gradio
}
"""
sample_gallery.select(fn=None, js=select_js, outputs=[selected_samples_textbox])
async def handle_sample_analysis(selected_paths_str: str):
selected_images = [path for path in selected_paths_str.split(',') if path]
if not selected_images:
raise gr.Error("Please select at least one sample image to analyze.")
analysis_results = await process_analysis("Sample User", 0, selected_images, is_sample=True)
# We need to return an update for every output component
return [
gr.update(visible=True), # main_app
gr.update(visible=False), # samples_page
*analysis_results
]
analyze_samples_btn.click(fn=handle_sample_analysis, inputs=[selected_samples_textbox], outputs=[main_app, samples_page, uploader_column, results_column, result_images, result_label])
# --- Page Navigation ---
all_pages = [main_app, history_page, samples_page]
async def show_history_page_and_refresh():
records_update = await refresh_history_table()
return [gr.update(visible=False), gr.update(visible=True), gr.update(visible=False), records_update]
def show_samples_page():
return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True)]
def show_main_page():
return [gr.update(visible=True), gr.update(visible=False), gr.update(visible=False)]
history_btn.click(fn=show_history_page_and_refresh, outputs=all_pages + [history_df])
samples_btn.click(fn=show_samples_page, outputs=all_pages)
back_to_main_btn_hist.click(fn=show_main_page, outputs=all_pages)
back_to_main_btn_samp.click(fn=show_main_page, outputs=all_pages)
refresh_history_btn.click(fn=refresh_history_table, outputs=history_df)
demo.load(fn=refresh_history_table, outputs=history_df)
# --- Launch the App ---
if __name__ == "__main__":
demo.launch()
|