task
stringclasses
5 values
input
stringlengths
89
339
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [12*]S(=O)(=O)/C=C/c1ccccc1Cl Fragment 2: [16*]c1cccc(C)c1[16*] ### Response: Cc1cccc([N-]S(=O)(=O)/C=C/c2ccccc2Cl)c1C(=O)[O-]
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1sc(NC(=O)C[NH+](C)Cc2ccc(F)cc2)c(C)c1C ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCc1cccc2cc(C[NH2+]CCc3ccccc3C)c(=O)[nH]c12 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. Clc1cccc(c1)CNC(=O)c1cc(c(cc1)OC)OC1CCN(CC1)C(=O)C ### Response: COc1ccc(C(=O)NCc2cccc(Cl)c2)cc1OC1CCN(C(C)=O)CC1
functional_group
### Instruction: Does the molecule contain a amide group? Cn1cc(C(=O)NCCCc2ccccc2)cn1 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [16*]c1ccccc1Cl Fragment 2: [9*]n1cc([16*])cn1 ### Response: O[C@H]1CCCCC[C@H]1n1cc(-c2ccccc2Cl)cn1
functional_group
### Instruction: Does the molecule contain a halide group? O=C(OCc1ccccn1)[C@@H]1COc2ccccc21 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. c1cccc(c1)OCCOCCn1c(c2c(nc1)cc(cc2)F)=O ### Response: O=c1c2ccc(F)cc2ncn1CCOCCOc1ccccc1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(C(=O)OC)c(ccc1)NCN1C(=O)/C(SC1=O)=C\c1ccc(cc1)F ### Response: COC(=O)c1ccccc1NCN1C(=O)S/C(=C/c2ccc(F)cc2)C1=O
canonicalization
### Instruction: Canonicalize the following SMILES string. c12c(cc(cn2)NC(=O)c2ccc(C(=O)OC(C)(C)C)cc2)c(nn1C)C ### Response: Cc1nn(C)c2ncc(NC(=O)c3ccc(C(=O)OC(C)(C)C)cc3)cc12
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@H]1[NH2+]CC[C@@H]1C(=O)N1C[C@H](O)C[C@@H]1C(N)=O ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1ccc([C@@H](C[NH3+])S[C@H](C)CCO)cc1 ### Response: 4
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(Cl)ccccc1-c1nc(CC(=O)N([C@H]2CCS(=O)(=O)C2)CC=C)cs1 ### Response: C=CCN(C(=O)Cc1csc(-c2ccccc2Cl)n1)[C@H]1CCS(=O)(=O)C1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCc1ccc2oc(=O)cc(C[NH+]3CCN(Cc4cc(C=O)ccc4OC)CC3)c2c1 ### Response: 0
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1ccccc1CCNC(=O)N1CCC[C@H]1c1nc2ccccc2[nH]1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]NCC#C Fragment 2: [5*]N1CCC([15*])([15*])C1 ### Response: C#CCNCC(=O)N1CC[C@](CCC)(C(=O)[O-])C1
functional_group
### Instruction: Does the molecule contain a amide group? CC(C)NC(=O)CCNC(=O)N(C)[C@@H](C)c1cccc(Cl)c1 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]Nc1ccc2scnc2c1 Fragment 2: [1*]C(=O)c1ccc(S([12*])(=O)=O)cc1 ### Response: C[C@@H]1CCCN(S(=O)(=O)c2ccc(C(=O)Nc3ccc4scnc4c3)cc2)C1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1cc(C)cc(NC(=O)C(=O)NCc2ncc(C)s2)c1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(c(Br)cc(NC(NCCCN2CCOCC2)=O)cc1)C ### Response: Cc1ccc(NC(=O)NCCCN2CCOCC2)cc1Br
canonicalization
### Instruction: Canonicalize the following SMILES string. n1(c(c([nH+]cc1)N1CC[NH+](CC1)C/C=C/c1ccccc1)=O)CC ### Response: CCn1cc[nH+]c(N2CC[NH+](C/C=C/c3ccccc3)CC2)c1=O
canonicalization
### Instruction: Canonicalize the following SMILES string. C1CC[C@@H](SCC)C[C@@H]1NC(N1CCC(OC[C@H]2OCCCC2)CC1)=O ### Response: CCS[C@@H]1CCC[C@@H](NC(=O)N2CCC(OC[C@@H]3CCCCO3)CC2)C1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C([O-])C[C@H]1C(=O)NCCN1C(=O)CC1CCCC1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a aldehyde group? CCn1c(=O)c2ccccc2n(CC(=O)Nc2c(F)cccc2F)c1=O ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cn1ncnc1CNC(=O)N1CCC[C@@H]1c1ccc2c(c1)OCO2 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. O=C1C[C@H](CN1CCc1cc(ccc1)Cl)NC1CC[NH+](C)CC1 ### Response: C[NH+]1CCC(N[C@@H]2CC(=O)N(CCc3cccc(Cl)c3)C2)CC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]Oc1cccc(F)c1 Fragment 2: [16*]c1cccc(F)c1 ### Response: C#CCOc1cccc(F)c1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1ccc(C(=O)NCCNC(=O)c2cc(F)cc3[nH]cnc23)cc1F ### Response: 1
functional_group
### Instruction: Does the molecule contain a nitro group? O=C(COc1cccc[n+]1[O-])Nc1cccc(Oc2ccccc2)c1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. O=C(Cc1ccc[nH]1)N(Cc1ccccc1)C[C@H](O)c1ccco1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CSc1ccc(C(=O)/C=C/c2ccsc2)cc1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a thiol group? CC(C)OC(=O)[C@]1(C#N)[C@@H]2C=CC(C(N)=O)=CN2[C@H](C(N)=O)[C@@H]1c1ccccc1C(F)(F)F ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? N#Cc1ccc(S(=O)(=O)CCN2CCCc3ccccc32)cc1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)c1n[nH]c([14*])n1 Fragment 2: [5*]Nc1ccc2c(c1)OCCO2 ### Response: CC(C)c1nc(C(=O)Nc2ccc3c(c2)OCCO3)n[nH]1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(NC[C@H]1CCOC1)Nc1cccc(-c2cccs2)c1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]Nc1ccc2c(c1)N([5*])CC2 Fragment 2: [5*]NCC ### Response: CCNC(=O)N1CCc2ccc(NC(=O)N3CC[NH+](C4CC4)CC3)cc21
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(CSc1nc(-c2ccc(Cl)cc2)n[nH]1)Nc1ccccc1C(=O)NC1CCCC1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCN1C(=O)/C(=C/c2c(C)c(C#N)c(=O)n(C)c2N2CCCC2)SC1=S ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]OC(F)(F)F Fragment 2: [4*]CCc1ccc([16*])cc1 ### Response: CS(=O)(=O)NCCc1ccc(OC(F)(F)F)cc1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CN(Cc1cc(-c2ccccc2)n[nH]1)c1ncccn1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? ClC[C@H](Cl)C[n+]1ccccc1 ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. N(C)(C)c1ccc(cn1)C(=O)N1[C@H](Cc2c1cccc2)C(OC)=O ### Response: COC(=O)[C@H]1Cc2ccccc2N1C(=O)c1ccc(N(C)C)nc1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COCc1cccc2c1C[C@H](C)[C@@H]2[NH3+] ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CS(=O)(=O)NCc1cccc(NC(=O)c2cccc(F)c2)c1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[NH+](C)CCN(C(=O)c1ccc(Br)cc1)c1nc2cc3c(cc2s1)OCCO3 ### Response: 2
functional_group
### Instruction: Does the molecule contain a halide group? C[C@H]1CCCCN1S(=O)(=O)c1ccc(Br)c(C(=O)[O-])c1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cc(NC(=O)C(=O)N[C@@H](C)c2nc(C)cs2)c2ncccc2c1 ### Response: 2
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[NH2+][C@@H]1CC[C@@H](n2ccnc2-c2cccs2)C1 ### Response: 3
functional_group
### Instruction: Does the molecule contain a ether group? Cc1ccncc1N1CC[NH+]2CCC[C@@H]2C1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCNc1cc(C(=O)N2CCO[C@@H](C#N)C2)ccn1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCC(CC)n1ccc(C[C@@H](CO)c2ccc(F)cc2)n1 ### Response: 5
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCCN(C)c1ccc(C(=O)N[C@H](c2ccc(F)cc2)c2nccn2C)cc1 ### Response: 3
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COc1cccc(N2C(=O)[C@H]3CCC[NH+]3[C@@H]2c2ccc(C)cc2)c1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. N1(c2ccc(c(C)c2)C)C[C@H](CC1=O)C(NCC1CCN(CC1)C(OC)=O)=O ### Response: COC(=O)N1CCC(CNC(=O)[C@H]2CC(=O)N(c3ccc(C)c(C)c3)C2)CC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]CC=C Fragment 2: [5*]N([5*])Cc1ccc(OC)cc1 ### Response: C=CCN(Cc1ccc(OC)cc1)C(=O)Nc1c(C)nn(CC)c1C
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1c(C(=O)Nc2cc(C(C)(C)C)nn2C)nnn1-c1ccccc1 ### Response: 3
functional_group
### Instruction: Does the molecule contain a amide group? NNC(=O)[C@@H]1CC[C@H](CSc2cccc(F)c2)O1 ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. c1([C@@H]2OC[C@@H]([NH2+][C@H]2CC)CC)ccccc1 ### Response: CC[C@H]1CO[C@@H](c2ccccc2)[C@H](CC)[NH2+]1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1[nH+]c(C2CCN(C(=O)CCn3cc[nH+]c3C)CC2)nc(N2CCOCC2)c1C ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCOC(=O)c1c(C)nn(-c2ccc(NC(=O)c3snnc3C)cc2)c1C ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)[C@@H](N[5*])[C@@H](C)CC Fragment 2: [16*]c1ccccc1 ### Response: CC[C@H](C)[C@H](NC(N)=O)C(=O)NCC1(c2ccccc2)CCC1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@@H]1CN(C(=O)c2ccc(I)cc2)CC[C@@H]1[NH3+] ### Response: 0
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1cc(OC)c(C(=O)COc2ccc(C)cc2N)cc1OC ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(OCC(Nc2sc3CCCCc3c2C(=O)N)=O)c(ccc(C)c1)C ### Response: Cc1ccc(C)c(OCC(=O)Nc2sc3c(c2C(N)=O)CCCC3)c1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]CC[C@H]1CCC[NH2+]C1 Fragment 2: [3*]Oc1ncccc1C#N ### Response: N#Cc1cccnc1OCC[C@H]1CCC[NH2+]C1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(c1cccc(=O)[nH]1)N1CCC(c2cc(Cc3ccccc3)n[nH]2)CC1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(cncc(n1)CO)Oc1c(OC)cc(cc1)C ### Response: COc1cc(C)ccc1Oc1cncc(CO)n1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CN(C)c1ccc([C@@H]2CC(c3ccc(F)cc3)=NN2C2=NC(=O)CS2)cc1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. Cc1ccc(cc1O)CC(NNC(=O)CCSc1ccc(F)cc1)=O ### Response: Cc1ccc(CC(=O)NNC(=O)CCSc2ccc(F)cc2)cc1O
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C=C(Cl)CNCc1cc(C)c(F)c(C)c1 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. O=C(Cc1ccc(OC(F)F)cc1)N1CCc2c(F)ccc(F)c2C1 ### Response: 0
canonicalization
### Instruction: Canonicalize the following SMILES string. C1(NC(=O)NC[C@H](O)c2ccc(cc2)F)CC[NH+](Cc2ccccn2)CC1 ### Response: O=C(NC[C@H](O)c1ccc(F)cc1)NC1CC[NH+](Cc2ccccn2)CC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)C[4*] Fragment 2: [3*]OCC ### Response: CCOC(=O)CN(C(=O)[C@H]1C[C@@H]1C)c1ccc(F)cc1
functional_group
### Instruction: Does the molecule contain a thiol group? CC(=O)Nc1cc(C(=O)Nc2ccccc2C(=O)C(C)C)ccc1C ### Response: No
functional_group
### Instruction: Does the molecule contain a amide group? Cc1cc([N+](=O)[O-])cc(S(=O)(=O)Oc2cccc([N+](=O)[O-])c2)c1C ### Response: No
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CC(C)c1ccccc1-n1c(S[C@H](C)C(=O)NC(N)=O)nnc1-c1ccc(Cl)cc1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a nitro group? O=C(CSc1nnc(NC(=O)C2CCC2)s1)c1ccc(F)cc1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COC1CCN(S(=O)(=O)N2CCC[C@@H]2c2ccco2)CC1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC(C)(C)[NH2+]Cc1cccc(Oc2ncccn2)c1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a thiol group? COC(=O)c1ccc(OC(=O)c2ccn(-c3cccc(Cl)c3)n2)cc1 ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)N1CC([15*])C1 Fragment 2: [1*]C(=O)C[8*] ### Response: CC(C)(C)OC(=O)N1CC(CC(=O)N2CCCC[C@H]([NH+]3CCCC3)C2)C1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC(C)[C@@H](C)NC(=O)N[C@H](C)C(=O)NCc1ccco1 ### Response: 0
canonicalization
### Instruction: Canonicalize the following SMILES string. c12c(CCC(O[C@H](C(Nc3ccc(cc3)C)=O)C)=O)c[nH]c1cccc2 ### Response: Cc1ccc(NC(=O)[C@H](C)OC(=O)CCc2c[nH]c3ccccc23)cc1
functional_group
### Instruction: Does the molecule contain a phenol group? COc1ccc(NC(=O)C[C@@H](C)S(=O)(=O)c2ccc3c(c2)C[C@H](C)N3C(C)=O)cc1 ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@@H]1CN(C(=O)N[C@@H](C)c2nc(-c3ccc(Cl)cc3)no2)C[C@H](C)O1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*][NH+]1CCCC[C@@H]1[13*] Fragment 2: [1*]C(=O)[C@@H]([4*])C ### Response: C[C@@H](C(=O)NCc1ccco1)[NH+]1CCCC[C@@H]1C(=O)[O-]
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1cccc(C[NH+](C)CC(=O)Nc2ccccc2Br)c1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a hydroxyl group? CCN(CC)c1ncnc(OC2CCCCC2)c1N ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]C[C@@H]1CCCO1 Fragment 2: [16*]c1ccc(Br)cc1 ### Response: O=S(=O)(c1ccc(F)cc1)c1nc(-c2ccc(Br)cc2)oc1NC[C@@H]1CCCO1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@H](Nc1ccc(S(=O)(=O)N2CCCCC2)cn1)[C@@H](C)CO ### Response: 0
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(OCC#N)cc(cc1)CC(=O)N(C)Cc1ccccc1-c1ccccc1 ### Response: CN(Cc1ccccc1-c1ccccc1)C(=O)Cc1cccc(OCC#N)c1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@@H]1C[C@@H]([NH3+])CN(c2ccc(F)cc2[N+](=O)[O-])C1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@@H]1CCCC[C@H]1[NH2+][C@@H]1CCN(C2CCCCC2)C1=O ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COc1ccc(-c2ncnc(Cl)c2C=O)c(C)c1 ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)[C@H]1CCCO[C@@H]1[13*] Fragment 2: [16*]c1ccccc1 ### Response: O=C(N[C@H]1CC[NH2+]C1)[C@H]1CCCO[C@@H]1c1ccccc1
functional_group
### Instruction: Does the molecule contain a nitro group? Cc1ccccc1Cc1nnc(NC(=O)C[C@H]2C[NH2+]CCO2)s1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCN(C(=O)c1cnc([C@H]2CCCO2)s1)c1ccncc1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cscc1[C@@H](O)[C@@H](C[NH3+])c1ccc(Cl)c(Cl)c1 ### Response: 3
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc(NC(=O)[C@H]2CCCN2S(=O)(=O)c2ccc3c(c2)NC(=O)CO3)cc1Cl ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. C1Oc2c(cc(C(=O)N3C[C@H](C)[C@@H](C(=O)OC)C3)cc2)C1 ### Response: COC(=O)[C@H]1CN(C(=O)c2ccc3c(c2)CCO3)C[C@@H]1C