task
stringclasses
5 values
input
stringlengths
89
339
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)N1CCC(O[3*])CC1 Fragment 2: [5*]N1CCC([15*])CC1 ### Response: CC(C)(CNC(=O)N1CCC(OC2CCCC2)CC1)c1ccncc1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC[C@H](C)NS(=O)(=O)c1cc(C)c(Cl)cc1C ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [14*]c1ccc(Cl)s1 Fragment 2: [6*]C(=O)C[C@@]1(O)C(=O)N(C[NH+]2CCOCC2)c2ccccc21 ### Response: O=C(C[C@@]1(O)C(=O)N(C[NH+]2CCOCC2)c2ccccc21)c1ccc(Cl)s1
functional_group
### Instruction: Does the molecule contain a amine group? C/C=C1/C[NH+]2CC[C@]34c5ccccc5N[C@H]3[C@@H](CO)[C@H]1C[C@H]24 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]NC1CCCCC1 Fragment 2: [14*]c1cccc[n+]1C(=O)[C@H](C)OC ### Response: CO[C@@H](C)C(=O)[n+]1ccccc1NC1CCCCC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]Cc1ccc(Br)s1 Fragment 2: [14*]c1ccco1 ### Response: O=C(NCc1ccc(Br)s1)N[C@@H](CO)c1ccco1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. [NH3+]Cc1ccccc1-n1nc(C(F)(F)F)c2c1CCC2 ### Response: 2
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC[NH+]1CCN(CCc2nc(-c3ccc(C)cc3)no2)CC1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a nitro group? Cc1cccc(N2N=C(C(=O)NCc3ccco3)CCC2=O)c1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(c(Cl)cc(c1)[N+]([O-])=O)-n1c2c(nn1)cccc2 ### Response: O=[N+]([O-])c1ccc(-n2nnc3ccccc32)c(Cl)c1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1cc(cs1)C[C@H]([C@H]1CSCCO1)[NH2+]C ### Response: C[NH2+][C@H](Cc1ccsc1)[C@H]1CSCCO1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [8*]CS(C)(=O)=O Fragment 2: [15*]C1([15*])CC1 ### Response: CS(=O)(=O)CC1(CC(=O)OCc2ccc3[nH]nnc3c2)CC1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(ccc([C@@H](NC(CN2C(c3ccccc3N3[C@]2(C)CCC3=O)=O)=O)CC)cc1)C ### Response: CC[C@H](NC(=O)CN1C(=O)c2ccccc2N2C(=O)CC[C@]12C)c1ccc(C)cc1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC[C@@H]1CN(C(=O)N[C@@H](C)c2ccc(Cl)s2)C[C@@H](C)O1 ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1c([C@@H](C)[NH2+]CCn2c(=O)[nH]c3ccccc32)cnn1-c1ccccn1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a nitrile group? CC1(C)C[C@@H](NC[C@@H]2CCCN(c3ncccn3)C2)C[NH+]1Cc1ccccc1 ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]NCCC[8*] Fragment 2: [9*]n1cc[nH+]c1 ### Response: Cc1ccc(F)cc1NC(=O)C(=O)NCCCn1cc[nH+]c1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)C[8*] Fragment 2: [5*]NCC ### Response: CCNC(=O)Cc1c(C)nc2ccccc2c1-c1ccccc1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC1(C)CCC(C#N)([C@@H](O)c2cn3ccccc3n2)CC1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? NC1=[NH+]C[C@H](c2cccc(F)c2)N1Cc1cccs1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@H]1CN(C(=O)N(C)CCc2cccs2)C[C@H]1C(=O)[O-] ### Response: 0
canonicalization
### Instruction: Canonicalize the following SMILES string. O=C(N)N/N=C/c1c(c(F)c(c(c1F)F)F)F ### Response: NC(=O)N/N=C/c1c(F)c(F)c(F)c(F)c1F
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]OCC[4*] Fragment 2: [3*]Oc1ccc(F)cc1 ### Response: N#C[C@@H]1CNCCN1CCOc1ccc(F)cc1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1cc2C(=O)/C(=C/c3ccc(c(c3)OC)OC)Oc2c(c1[O-])C[NH+](C)Cc1ccccc1 ### Response: COc1ccc(/C=C2\Oc3c(ccc([O-])c3C[NH+](C)Cc3ccccc3)C2=O)cc1OC
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CN(C)C(=S)SCC(N)=O ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [14*]c1cccs1 Fragment 2: [4*]Cc1cccc(F)c1 ### Response: O=C(N/N=C\c1ccc(OCc2cccc(F)c2)cc1)c1cccs1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*][C@@H](C)[C@H](O)C[8*] Fragment 2: [16*]c1ccccc1 ### Response: C[C@H](NC(=O)NCc1ncn(C)n1)[C@H](O)Cc1ccccc1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CN(CC(F)F)C(=O)CCc1ccc(F)cc1F ### Response: 0
functional_group
### Instruction: Does the molecule contain a ether group? O=C(CNC(=O)Nc1cccc(OCC(F)(F)F)c1)NC1CC1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CC(C)[C@@H](C)N(C(=O)N[C@@H](C)c1ccc(N2CCCC2=O)cc1)C1CC1 ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@H]1C[C@@H](NC(=O)[C@@H]2Cc3cc(F)ccc3O2)CN1c1ccccc1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N(C)[C@H]1CCCC[C@@H]1C Fragment 2: [1*]C(=O)C[4*] ### Response: C[C@H]1CCCC[C@@H]1N(C)C(=O)CSc1nncs1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1nc(C)n(-c2ccc(C(=O)N(C3CCCC3)C3CC3)cc2)n1 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCc1ccc(C[C@H](O)Cc2ccccc2)nc1 ### Response: 0
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COC(=O)[C@@]1(C(C)C)O[C@]1(C)c1ccc(F)cc1 ### Response: 0
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1cc2noc(-c3ccccc3)c2cc1Cl ### Response: 1
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CCC1=NN2C(=N)/C(=C/c3ccc(OCCOc4c(C)cccc4C)cc3)C(=O)N=C2S1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a amine group? CC(C)OCCS(=O)(=O)[N-]c1ccc(O)c(C(=O)[O-])c1 ### Response: No
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CC1CC[NH+]([C@H](CNC(=O)COc2ccc(Br)cc2)c2cccs2)CC1 ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. c1ccnc(Nc2ccc(CC)cc2)c1N ### Response: CCc1ccc(Nc2ncccc2N)cc1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CN(CCc1ccccn1)c1nc[nH+]c2nc(N)ccc12 ### Response: 2
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? Cc1csc(=O)n1CCSc1nnc(-c2ccc(F)cc2)n1C ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. C1CN(CC(NCC)=O)CCN1[C@H](C(N1CCc2ccccc21)=O)C ### Response: CCNC(=O)CN1CCN([C@@H](C)C(=O)N2CCc3ccccc32)CC1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCSc1ncnc2c1c(-c1ccccc1)cn2-c1ccccc1OC ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(N)cc(ccc1C(=O)N[C@H](C)CCC(C)C)C ### Response: Cc1ccc(C(=O)N[C@H](C)CCC(C)C)c(N)c1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COc1ccc(-c2nc(C)c([C@@H](C)[NH2+][C@@H]3CCOC3)s2)cc1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Fc1ccc(C=NNC(=S)N/N=C/c2ccc(F)cc2)cc1 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CN(C)[C@@H](CNC(=O)c1cn(-c2ccccc2)nc1-c1cccs1)c1cccs1 ### Response: 3
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1ccc(NC(=O)[C@H]2CS[C@]3(C)CCC(=O)N23)cc1[N+](=O)[O-] ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@@H]1CCC[C@@H](N(C)C(=O)CNC(=O)c2cccc(Cl)c2)C1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]Nc1cc([14*])n[nH]1 Fragment 2: [8*]CCCC ### Response: CCCCc1cc(NC(=O)c2ccc(SCC)nc2)[nH]n1
canonicalization
### Instruction: Canonicalize the following SMILES string. C1[C@H](C)CCC[C@@H]1c1nc(-c2oc(C[NH3+])cc2)on1 ### Response: C[C@@H]1CCC[C@H](c2noc(-c3ccc(C[NH3+])o3)n2)C1
functional_group
### Instruction: Does the molecule contain a ketone group? Cc1ccc([C@@H](CNC(=O)[C@@H]2CCCN(c3ncccn3)C2)[NH+](C)C)cc1 ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N1CCC2(CC1)OCCO2 Fragment 2: [1*]C(=O)c1cc2c(=O)[nH]c3ccccc3c2s1 ### Response: O=C(c1cc2c(=O)[nH]c3ccccc3c2s1)N1CCC2(CC1)OCCO2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@@H]1[C@H](C(=O)[O-])CCN1C(=O)c1c(Cl)cccc1[N+](=O)[O-] ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)c1cc2c(Br)cccc2[nH]1 Fragment 2: [5*]N1CCN([10*])C(=O)C1 ### Response: COCCN1CCN(C(=O)c2cc3c(Br)cccc3[nH]2)CC1=O
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CNC(=O)Nc1ccc(NC(=O)[C@H](C)Cc2c(C)n[nH]c2C)cc1 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]Nc1ncnc(NN(C)C)c1N Fragment 2: [4*]Cc1cccnc1 ### Response: CN(C)Nc1ncnc(NCc2cccnc2)c1N
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(Nc1ccccc1Cl)C(c1ccccc1)c1ccccc1 ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@@H](c1ccc(Cl)cc1)[NH+](Cn1nc(-c2ccccc2F)ccc1=O)C1CC1 ### Response: 3
functional_group
### Instruction: Does the molecule contain a nitrile group? COc1ccc(OCC(=O)Nc2cccc(N3CCCn4c(nc5ccccc54)C3)c2)cc1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. O(C)c1ccc([C@]2(C[NH2+]CC)CCC[C@@H]2C)cc1 ### Response: CC[NH2+]C[C@@]1(c2ccc(OC)cc2)CCC[C@@H]1C
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Fc1ccccc1C1(C[C@H]2CCCO2)C[NH2+]C1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [16*]c1ccccc1 Fragment 2: [3*]Oc1ccccc1N[5*] ### Response: COc1cc(C(=O)Nc2ccccc2Oc2ccccc2)on1
functional_group
### Instruction: Does the molecule contain a amide group? Cc1cc(OCC(=O)Nc2cc(F)ccc2C)nc(N2CCC[C@@H](C)C2)n1 ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COC(=O)C(C)(C)[C@H]1CCC[NH+]([C@@H](C)C(=O)N[C@H](C)c2ccccc2C)C1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(Cl)c(cc(cc1)Cl)OS(c1cc2[nH]c([nH]c2cc1)=O)(=O)=O ### Response: O=c1[nH]c2ccc(S(=O)(=O)Oc3cc(Cl)ccc3Cl)cc2[nH]1
functional_group
### Instruction: Does the molecule contain a amide group? CC(=O)CCc1ccc(OCC(=O)N2CCO[C@@H]3CCCC[C@H]32)cc1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COC(=O)c1ccc(F)c(NC(=O)NNc2ncccc2Cl)c1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Brc1cnc(NCc2cccc(Cn3ccnc3)c2)nc1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a ether group? CS(=O)(=O)CCCNc1cccc(-c2ccc3c(c2)CCO3)c1 ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Nc1nc(SCc2c(C(=O)[O-])sc3cccc(F)c23)n[nH]1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COc1cc(Nc2cncc(-n3nc(C)cc3C)n2)ccc1NC(C)=O ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COCCN1C(N)=[NH+]CC12Cc1ccccc1C2 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [7*]Cc1cc(Cl)ccc1O Fragment 2: [16*]c1ccc(C)cc1 ### Response: Cc1ccc(N2C(=N)S/C(=C\c3cc(Cl)ccc3O)C2=O)cc1
functional_group
### Instruction: Does the molecule contain a ether group? CC(C)(C)NC(=O)NC(=O)Cn1ccnc1 ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. O=C(NC(=S)Nc1ccc(-c2ccc(CO)o2)cc1)c1ccc(Cl)cc1Cl ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1cc(OC)ccc1-c1n2c(nc1-c1ccc(cc1)OC)s/c(=C\c1occc1)c2=O ### Response: COc1ccc(-c2nc3s/c(=C\c4ccco4)c(=O)n3c2-c2ccc(OC)cc2)cc1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1cc(C)c(-c2nc3nc(N(C)C)ccc3[nH]2)c(C)c1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1cc(ccc1NC(=O)[C@H]1CC(=O)N(c2cccc(c2)Cl)C1)OCCC(=O)N ### Response: NC(=O)CCOc1ccc(NC(=O)[C@H]2CC(=O)N(c3cccc(Cl)c3)C2)cc1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCc1noc([C@@H]2CCCCN2C(=O)CCCc2ccccc2)n1 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1cscc1C[NH2+]Cc1ccc(Cl)c(N)c1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1ccc(CC([O-])=O)cc1NS(=O)(=O)c1cccc(Cl)c1 ### Response: O=C([O-])Cc1cccc(NS(=O)(=O)c2cccc(Cl)c2)c1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(F)ccc(c1)N1CCN(CC1)c1n2ncnc2nc(c1)C ### Response: Cc1cc(N2CCN(c3ccc(F)cc3)CC2)n2ncnc2n1
functional_group
### Instruction: Does the molecule contain a aldehyde group? Cc1cc(C)cc(NC(=O)N2Cc3c(sc4c3CC[NH+](C)C4)-n3cccc3[C@H]2C)c1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCOC(=O)c1ccc(NS(=O)(=O)c2cc3[nH]c4c(c3cc2C)C(=O)CC(C)(C)C4)cc1 ### Response: 3
functional_group
### Instruction: Does the molecule contain a ether group? Cc1cc(F)c([C@@](C)(CO)NCc2cccs2)cc1F ### Response: No
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CCc1ccc(C(=O)N2CCOC[C@H]2C[C@H](O)c2cccs2)cc1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cccc(C(=O)NC[C@H](C)N(C)c2ccccc2)c1C ### Response: 3
functional_group
### Instruction: Does the molecule contain a carboxyl group? CC1(C)C(Cn2c(N)[nH+]c3ccc(F)cc32)C1(C)C ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@H]([NH2+][C@H]1C[C@@H](C)N(C2CC2)C1)[C@H](O)c1ccc(F)c(F)c1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]Oc1ncccc1C#N Fragment 2: [14*]c1ncccc1C#N ### Response: N#Cc1cccnc1Oc1ccccc1NCc1cccc2ccccc12
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COc1cc(F)cc(CNC(=O)Cc2nc(-c3ccsc3)oc2C)c1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. O=C(N[C@H]1C=C[C@H](C(=O)[O-])C1)c1cc(F)c(Cl)cc1Cl ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCC(=O)N1CCCN(C(=O)N[C@H](C)c2cccc(-n3ccnc3)c2)CC1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a phenol group? CNC(=O)CCc1ccc(C(C)C)cc1 ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. O=C(NCC[C@@H]1CCC[NH2+]C1)N[C@H]1CCOC1 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCO[C@H]1C[C@@H]([O-])C12CC[NH+](Cc1cc[nH]c1)CC2 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC[NH+](CC)[C@@H](C)CNC(=O)N1C[C@@H](C)c2ccccc21 ### Response: 3
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CN(C)c1ccc(/C=N\N=C2/NC(=O)[C@H](Cc3ccccc3)S2)cc1 ### Response: 1