query stringlengths 53 100 | positive listlengths 1 10 | negative listlengths 4 10 | system stringlengths 68 790 |
|---|---|---|---|
What is the biomedical concept corresponding to 's. zeamais'? | [
"sitophilus zeamais (sitophilus oryzae zeamais)"
] | [
"melania zeamais (tylomelania zeamais)",
"tylomelania zeamais (melania zeamais)",
"elysia zemi",
"zela zeus",
"inesius zeae",
"nonomuraea zeae",
"zelotes sula",
"koptothrips zelus",
"leucas zeylanica",
"pratylenchus zeae"
] | Given the context 'A high-throughput assay based on TaqMan single nucleotide polymorphism genotyping was developed for sensitive detection of the mutation and used to screen field-collected strains of S. zeamais.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus var. elli... | [
"aspergillus fumigatus var. albus",
"aspergillus fumigatus var. fumigatus (aspergillus fumigatus var. acolumnaris)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus subgen. fumigati",
"aspergillus sp... | Given the context 'Functional analysis of the fungal/plant class chitinase family in Aspergillus fumigatus.
', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus var. elli... | [
"aspergillus fumigatus var. albus",
"aspergillus fumigatus var. fumigatus (aspergillus fumigatus var. acolumnaris)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus subgen. fumigati",
"aspergillus sp... | Given the context 'A quintuple mutant was constructed to delete the entire family of the fungal/plant (class III) chitinases of Aspergillus fumigatus.', answer the user's query. |
What is the biomedical concept corresponding to 'a. fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus var. elli... | [
"aspergillus fumigatus var. albus",
"aspergillus fumigatus var. fumigatus (aspergillus fumigatus var. acolumnaris)",
"aspergillus subgen. fumigati",
"aspergillus aff. fumigatus a30",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus fumigatus af293",
"aspergillus sp. a1... | Given the context 'This result demonstrated that the fungal/plant chitinases do not have an essential role in the morphogenesis of A. fumigatus.', answer the user's query. |
What is the biomedical concept corresponding to 'thamnophis elegans'? | [
"thamnophis elegans (western terrestrial garter snake)",
"eutainia elegans (thamnophis elegans)",
"western terrestrial garter snake (thamnophis elegans)"
] | [
"thamnidium elegans",
"chrysolampus elegans",
"clanoptilus elegans",
"adeuomphalus elegans",
"gigantothrips elegans",
"temnora elegans",
"ophiogymna elegans",
"trimeresurus elegans (protobothrops elegans)",
"ainsliaea elegans",
"elionurus elegans"
] | Given the context 'Developmental plasticity of immune defence in two life-history ecotypes of the garter snake, Thamnophis elegans - a common-environment experiment.
', answer the user's query. |
What is the biomedical concept corresponding to 'thamnophis elegans'? | [
"thamnophis elegans (western terrestrial garter snake)",
"eutainia elegans (thamnophis elegans)",
"western terrestrial garter snake (thamnophis elegans)"
] | [
"thamnidium elegans",
"chrysolampus elegans",
"clanoptilus elegans",
"adeuomphalus elegans",
"gigantothrips elegans",
"temnora elegans",
"ophiogymna elegans",
"trimeresurus elegans (protobothrops elegans)",
"ainsliaea elegans",
"elionurus elegans"
] | Given the context 'Replicate populations of two life-history ecotypes of the garter snake Thamnophis elegans provide an ideal system in which to test this assumption.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)",
"sterigmatocystis nidulans (aspergillus nidulans)"
] | [
"aspergillus nidulans var. nidulans (emericella nidulans var. nidulans)",
"emericella nidulans var. nidulans (aspergillus nidulans var. nidulans)",
"aspergillus subgen. nidulantes",
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus niger subsp. niger (aspergillus niger var. niger)",
"asper... | Given the context 'UreA, the major urea/H+ symporter in Aspergillus nidulans.
', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)",
"sterigmatocystis nidulans (aspergillus nidulans)"
] | [
"aspergillus nidulans var. nidulans (emericella nidulans var. nidulans)",
"emericella nidulans var. nidulans (aspergillus nidulans var. nidulans)",
"aspergillus subgen. nidulantes",
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus niger subsp. niger (aspergillus niger var. niger)",
"asper... | Given the context 'We report here the characterization of UreA, a high-affinity urea/H+ symporter of Aspergillus nidulans.', answer the user's query. |
What is the biomedical concept corresponding to 'a. nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)",
"sterigmatocystis nidulans (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)"
] | [
"aspergillus nidulans var. nidulans (emericella nidulans var. nidulans)",
"emericella nidulans var. nidulans (aspergillus nidulans var. nidulans)",
"nassella nidulans",
"aphanothece nidulans",
"olgaea nidulans",
"aspergillus subgen. nidulantes",
"phyllotopsis nidulans (agaricus nidulans)",
"agaricus n... | Given the context 'The deletion of the encoding gene abolishes urea transport at low substrate concentrations, suggesting that in these conditions UreA is the sole transport system specific for urea in A. nidulans.', answer the user's query. |
What is the biomedical concept corresponding to 'a. nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)",
"sterigmatocystis nidulans (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)"
] | [
"aspergillus nidulans var. nidulans (emericella nidulans var. nidulans)",
"emericella nidulans var. nidulans (aspergillus nidulans var. nidulans)",
"nassella nidulans",
"aphanothece nidulans",
"olgaea nidulans",
"aspergillus subgen. nidulantes",
"phyllotopsis nidulans (agaricus nidulans)",
"agaricus n... | Given the context 'In contrast to what was observed for other transporters in A. nidulans, repression by ammonium is also operative during the isotropic growth phase.', answer the user's query. |
What is the biomedical concept corresponding to 'a. nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)",
"sterigmatocystis nidulans (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)"
] | [
"aspergillus nidulans var. nidulans (emericella nidulans var. nidulans)",
"emericella nidulans var. nidulans (aspergillus nidulans var. nidulans)",
"nassella nidulans",
"aphanothece nidulans",
"olgaea nidulans",
"aspergillus subgen. nidulantes",
"phyllotopsis nidulans (agaricus nidulans)",
"agaricus n... | Given the context 'A number of homologues of UreA have been identified in A. nidulans and other Aspergilli, which cluster in four groups, two of which contain the urea transporters characterized so far in fungi and plants.', answer the user's query. |
What is the biomedical concept corresponding to 'ustilago maydis'? | [
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"uredo maydis (mycosarcoma maydis)",
"corn smut (mycosarcoma maydis)"
] | [
"heliminthosporium maydis (bipolaris maydis)",
"peronosclerospora maydis (peronospora maydis)",
"peronospora maydis (peronosclerospora maydis)",
"mycosphaerella zeae-maydis (didymella maydis)",
"ustilago maydis virus",
"didymella maydis (yellow leaf blight of maize)",
"drechslera maydis (bipolaris maydi... | Given the context 'Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis.
Ustilago maydis, the causative agent of corn smut disease, contains two genes encoding members of the carotenoid cleavage oxygenase family, a group of enzymes that cleave double bonds in different substrates.', answer the user's query. |
What is the biomedical concept corresponding to 'ustilago maydis'? | [
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"uredo maydis (mycosarcoma maydis)",
"corn smut (mycosarcoma maydis)"
] | [
"heliminthosporium maydis (bipolaris maydis)",
"peronosclerospora maydis (peronospora maydis)",
"peronospora maydis (peronosclerospora maydis)",
"mycosphaerella zeae-maydis (didymella maydis)",
"ustilago maydis virus",
"didymella maydis (yellow leaf blight of maize)",
"drechslera maydis (bipolaris maydi... | Given the context 'Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis.
Ustilago maydis, the causative agent of corn smut disease, contains two genes encoding members of the carotenoid cleavage oxygenase family, a group of enzymes that cleave double bonds in different substrates.', answer the user's query. |
What is the biomedical concept corresponding to 'corn smut'? | [
"corn smut (mycosarcoma maydis)",
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)"
] | [
"indian corn (zea mays subsp. mays)",
"corn (zea mays subsp. mays) (zea mays subsp. mays)",
"zea saccharata (zea mays subsp. mays)",
"schedotrioza cornuta",
"smut grass (sporobolus indicus)",
"zea mays subsp. mays (zea mays var. saccharata (sturtev.) l.h.bailey, 1902)",
"zea mays subsp. sacharata (zea m... | Given the context 'Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis.
Ustilago maydis, the causative agent of corn smut disease, contains two genes encoding members of the carotenoid cleavage oxygenase family, a group of enzymes that cleave double bonds in different substrates.', answer the user's query. |
What is the biomedical concept corresponding to 'ustilago maydis'? | [
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"uredo maydis (mycosarcoma maydis)",
"corn smut (mycosarcoma maydis)"
] | [
"heliminthosporium maydis (bipolaris maydis)",
"peronosclerospora maydis (peronospora maydis)",
"peronospora maydis (peronosclerospora maydis)",
"mycosphaerella zeae-maydis (didymella maydis)",
"ustilago maydis virus",
"didymella maydis (yellow leaf blight of maize)",
"drechslera maydis (bipolaris maydi... | Given the context 'Here we elucidate the function of the protein encoded by the second gene, termed here as Ustilago maydis Resveratrol cleavage oxygenase 1 (Um Rco1).', answer the user's query. |
What is the biomedical concept corresponding to 'u. maydis'? | [
"uredo maydis (mycosarcoma maydis)",
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"corn smut (mycosarcoma maydis)"
] | [
"peronosclerospora maydis (peronospora maydis)",
"didymella zeae-maydis (didymella maydis)",
"peronospora maydis (peronosclerospora maydis)",
"heliminthosporium maydis (bipolaris maydis)",
"duvaliomimus mayae",
"drechslera maydis (bipolaris maydis)",
"phyllachora maydis",
"mycosphaerella zeae-maydis (... | Given the context 'The activity of Um Rco1 was confirmed by incubation of U. maydis rco1 deletion and over-expression strains with resveratrol.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus var. elli... | [
"aspergillus fumigatus var. albus",
"aspergillus fumigatus var. fumigatus (aspergillus fumigatus var. acolumnaris)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus subgen. fumigati",
"aspergillus sp... | Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', answer the user's query. |
What is the biomedical concept corresponding to 'chaetomium globosum'? | [
"chaetomium globosum (chaetomium rectum)",
"chaetomium rectum (chaetomium globosum)"
] | [
"chaetomium cf. globosum",
"chaetomium globisporum",
"rhexothecium globosum",
"leptographium globosum",
"brachymenium globosum",
"achaetomium globosum",
"pachydictyum globosum",
"aecidium globosum (gymnosporangium globosum)",
"chaetosphaeridium globosum (herposteiron globosus)",
"xiphinema globosu... | Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', answer the user's query. |
What is the biomedical concept corresponding to 'botryotinia fuckeliana'? | [
"sclerotinia fuckeliana (botrytis cinerea)",
"botryotinia fuckeliana (botrytis cinerea)",
"botrytis cinerea (botryotinia fuckeliana)"
] | [
"botrytis fuckeliana",
"botryotinia fuckeliana b05.10 (botrytis cinerea b05.10)",
"nectria fuckeliana (corinectria fuckeliana)",
"botryotinia fuckeliana bcdw1 (botrytis cinerea bcdw1)",
"neonectria fuckeliana (corinectria fuckeliana)",
"botrytis cinerea b05.10 (botryotinia fuckeliana b05.10)",
"botrytis... | Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"peromyscus leucopus leucopus",
"black-eared mouse (peromyscus melanotis)",
"white-bellied melomys (melomys leucogaster)",
"peromyscus melanotis (black-eared mouse)",
"melomys leucogaster (white-bellied melomys)",
"peromyscus polionotus albifrons",
"nimble... | Given the context 'Linking disease and community ecology through behavioural indicators: immunochallenge of white-footed mice and its ecological impacts.
', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"peromyscus leucopus leucopus",
"black-eared mouse (peromyscus melanotis)",
"white-bellied melomys (melomys leucogaster)",
"peromyscus melanotis (black-eared mouse)",
"melomys leucogaster (white-bellied melomys)",
"peromyscus polionotus albifrons",
"nimble... | Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', answer the user's query. |
What is the biomedical concept corresponding to 'peromyscus leucopus'? | [
"peromyscus leucopus (white-footed mouse)",
"white-footed mouse (peromyscus leucopus)"
] | [
"peromyscus leucopus leucopus",
"peromyscus polionotus leucocephalus",
"white-ankled mouse (peromyscus pectoralis)",
"peromyscus leucopus x peromyscus gossypinus",
"peromyscus pectoralis (white-ankled mouse)",
"peromyscus mexicanus (mexican deer mouse)",
"melomys leucogaster (white-bellied melomys)",
... | Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', answer the user's query. |
What is the biomedical concept corresponding to 'borrelia burgdorferi'? | [
"borrelia burgdorferi (borreliella burgdorferi)",
"borreliella burgdorferi (lyme disease spirochete)",
"lyme disease spirochete (borreliella burgdorferi)"
] | [
"borrelia burgdorferi sensu lato (borreliella)",
"borreliella (borrelia burgdorferi sensu lato)",
"lyme disease borrelia (borreliella)",
"borrelia africana (candidatus borrelia africana)",
"borrelia genomosp. 1 (borreliella genomosp. 1)",
"borrelia burgdorferi group (borreliella)",
"borreliella genomosp... | Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"peromyscus leucopus leucopus",
"black-eared mouse (peromyscus melanotis)",
"white-bellied melomys (melomys leucogaster)",
"peromyscus melanotis (black-eared mouse)",
"melomys leucogaster (white-bellied melomys)",
"peromyscus polionotus albifrons",
"nimble... | Given the context 'White-footed mice are a major reservoir host of Lyme disease (LD) spirochetes in northeastern USA and an abundant member of forest communities.', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"peromyscus leucopus leucopus",
"black-eared mouse (peromyscus melanotis)",
"white-bellied melomys (melomys leucogaster)",
"peromyscus melanotis (black-eared mouse)",
"melomys leucogaster (white-bellied melomys)",
"peromyscus polionotus albifrons",
"nimble... | Given the context 'The activity patterns, foraging behaviour, and space use of white-footed mice have implications for population growth rates of community members upon which mice incidentally prey (i.e. gypsy moths and native thrushes), as well as potentially determining host-vector encounter rates and human risk of LD.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'The activity patterns, foraging behaviour, and space use of white-footed mice have implications for population growth rates of community members upon which mice incidentally prey (i.e. gypsy moths and native thrushes), as well as potentially determining host-vector encounter rates and human risk of LD.', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"peromyscus leucopus leucopus",
"black-eared mouse (peromyscus melanotis)",
"white-bellied melomys (melomys leucogaster)",
"peromyscus melanotis (black-eared mouse)",
"melomys leucogaster (white-bellied melomys)",
"peromyscus polionotus albifrons",
"nimble... | Given the context 'Thus, immunochallenge in white-footed mice, and potentially pathogenic infection, have the potential to indirectly impact community interactions, including those important for pathogen transmission.
', answer the user's query. |
What is the biomedical concept corresponding to 'rice blast pathogen'? | [
"rice blast fungus (pyricularia oryzae)"
] | [
"alphanucleorhabdovirus oryzae",
"candidatus phytoplasma oryzae",
"rice phyllosphere bacterium f",
"bacterium endosymbiont of sitophilus oryzae",
"rice phyllosphere bacterium l",
"cytorhabdovirus oryzae (rice stripe mosaic cytorhabdovirus)",
"rice stripe mosaic cytorhabdovirus (cytorhabdovirus oryzae)",... | Given the context 'The cell cycle gene MoCDC15 regulates hyphal growth, asexual development and plant infection in the rice blast pathogen Magnaporthe oryzae.
', answer the user's query. |
What is the biomedical concept corresponding to 'magnaporthe oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"paraphaeosphaeria oryzae",
"phaeosphaeria oryzae (trematosphaerella oryzae)",
"trematosphaerella oryzae (phaeosphaeria oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"pleospora oryzae (phaeosphaeria oryzae)",
"monotospora oryzae (nigrospora oryzae)",
"phaeoseptoria oryzae (phaeosphaeria oryzae)",
... | Given the context 'The cell cycle gene MoCDC15 regulates hyphal growth, asexual development and plant infection in the rice blast pathogen Magnaporthe oryzae.
', answer the user's query. |
What is the biomedical concept corresponding to 'magnaporthe oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"paraphaeosphaeria oryzae",
"phaeosphaeria oryzae (trematosphaerella oryzae)",
"trematosphaerella oryzae (phaeosphaeria oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"pleospora oryzae (phaeosphaeria oryzae)",
"monotospora oryzae (nigrospora oryzae)",
"phaeoseptoria oryzae (phaeosphaeria oryzae)",
... | Given the context 'Rice blast, caused by the pathogen Magnaporthe oryzae, is a serious hindrance to rice production and has emerged as an important model for the characterization of molecular mechanisms relevant to pathogenic development in plants.', answer the user's query. |
What is the biomedical concept corresponding to 'rice'? | [
"rice (oryza sativa) (oryza sativa)",
"red rice (oryza sativa)",
"asian cultivated rice (oryza sativa)",
"oryza sativa (asian cultivated rice)"
] | [
"japanese rice (oryza sativa japonica group)",
"oryzopsis (ricegrass)",
"ricegrass (oryzopsis)",
"long-grained rice (oryza sativa indica group)",
"indian rice (oryza sativa indica group)",
"oryza",
"japonica rice (oryza sativa japonica group)",
"oryza sativa (indica group) (oryza sativa indica group)"... | Given the context 'Rice blast, caused by the pathogen Magnaporthe oryzae, is a serious hindrance to rice production and has emerged as an important model for the characterization of molecular mechanisms relevant to pathogenic development in plants.', answer the user's query. |
What is the biomedical concept corresponding to 'm.oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)"
] | [
"aspergillus oryzae var. oryzae",
"nigrospora oryzae (monotospora oryzae)",
"monotospora oryzae (nigrospora oryzae)",
"aspergillus oryzae (ahlb.) cohn, 1884 (aspergillus oryzae)",
"chitinophaga oryzae",
"paraphaeosphaeria oryzae",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"sakaguch... | Given the context 'Similar to other pathogenic fungi, conidiation plays a central role in initiation of M.oryzae infection and spread over a large area.', answer the user's query. |
What is the biomedical concept corresponding to 'm. oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)"
] | [
"aspergillus oryzae var. oryzae",
"nigrospora oryzae (monotospora oryzae)",
"monotospora oryzae (nigrospora oryzae)",
"aspergillus oryzae (ahlb.) cohn, 1884 (aspergillus oryzae)",
"chitinophaga oryzae",
"paraphaeosphaeria oryzae",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"sakaguch... | Given the context 'However, relatively little is known regarding the molecular mechanisms that underlie conidiation in M. oryzae.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'To better characterize these mechanisms, we identified a conidiation-defective mutant, ATMT0225B6 (MoCDC15(T-DNA)), in which a T-DNA insertion disrupted a gene that encodes a homolog of fission yeast cdc15, and generated a second strain containing a disruption in the same allele (DeltaMoCDC15(T-DNA)).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'The cdc15 gene has been shown to act as a coordinator of the cell cycle in yeast.', answer the user's query. |
What is the biomedical concept corresponding to 'm. oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)"
] | [
"aspergillus oryzae var. oryzae",
"nigrospora oryzae (monotospora oryzae)",
"monotospora oryzae (nigrospora oryzae)",
"aspergillus oryzae (ahlb.) cohn, 1884 (aspergillus oryzae)",
"chitinophaga oryzae",
"paraphaeosphaeria oryzae",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"sakaguch... | Given the context 'Functional analysis of the MoCDC15(T-DNA) and DeltaMoCDC15(T-DNA) mutants revealed that MoCDC15 is required for conidiation, preinfection development and pathogenicity in M. oryzae.', answer the user's query. |
What is the biomedical concept corresponding to 'm. oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)"
] | [
"aspergillus oryzae var. oryzae",
"nigrospora oryzae (monotospora oryzae)",
"monotospora oryzae (nigrospora oryzae)",
"aspergillus oryzae (ahlb.) cohn, 1884 (aspergillus oryzae)",
"chitinophaga oryzae",
"paraphaeosphaeria oryzae",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"sakaguch... | Given the context 'Together, these data indicate that MoCDC15 functions as a coordinator of several biological processes important for pathogenic development in M. oryzae.
', answer the user's query. |
What is the biomedical concept corresponding to 'glomus intraradices'? | [
"glomus intraradices (rhizophagus intraradices)",
"rhizophagus intraradices (glomus intraradices)"
] | [
"glomus",
"glomus cf. intraradices hg-2010 (rhizophagus cf. intraradices hg-2010)",
"glomus multiforum",
"glomus cerebriforme",
"glomus sp. am",
"glottidia (glottidea)",
"glomus sp. ai",
"glottidea (glottidia)",
"glomus sp. (unid)",
"glonium"
] | Given the context 'GintAMT2, a new member of the ammonium transporter family in the arbuscular mycorrhizal fungus Glomus intraradices.
', answer the user's query. |
What is the biomedical concept corresponding to 'glomus intraradices'? | [
"glomus intraradices (rhizophagus intraradices)",
"rhizophagus intraradices (glomus intraradices)"
] | [
"glomus",
"glomus cf. intraradices hg-2010 (rhizophagus cf. intraradices hg-2010)",
"glomus multiforum",
"glomus cerebriforme",
"glomus sp. am",
"glottidia (glottidea)",
"glomus sp. ai",
"glottidea (glottidia)",
"glomus sp. (unid)",
"glonium"
] | Given the context 'Previously, we identified an NH(4)(+) transporter in the AM fungus Glomus intraradices (GintAMT1) involved in NH(4)(+) uptake from the soil when preset at low concentrations.', answer the user's query. |
What is the biomedical concept corresponding to 'g. intraradicesnh(4)'? | [
"rhizophagus intraradices (glomus intraradices)",
"glomus intraradices (rhizophagus intraradices)"
] | [
"rhizophagus cf. intraradices hg-2010 (glomus cf. intraradices hg-2010)",
"glomus cf. intraradices hg-2010 (rhizophagus cf. intraradices hg-2010)",
"h12n4 subtype",
"human rotavirus g2p[4]",
"hyrrv-24 (betahymrhavirus heterodontonyx)",
"rabies virus bng4",
"h12n7 subtype",
"cloning vector rhip1pgw",
... | Given the context 'Here, we report the isolation and characterization of a new G. intraradicesNH(4)(+) transporter gene (GintAMT2).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)"
] | [
"true yeasts (saccharomycotina)",
"saccharomycetes (hemiascomycetes)",
"saccharomyces sp.",
"candida/saccharomycetales (candida/saccharomycales clade)",
"budding yeasts & others (saccharomycotina)",
"saccharomyceta",
"saccharomycodes",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisi... | Given the context 'Yeast mutant complementation assays showed that GintAMT2 encodes a functional NH(4)(+) transporter.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus var. elli... | [
"aspergillus fumigatus var. albus",
"aspergillus fumigatus var. fumigatus (aspergillus fumigatus var. acolumnaris)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus subgen. fumigati",
"aspergillus sp... | Given the context 'Since 1998, the rapid emergence of multi-azole-resistance (MAR) was observed in Aspergillus fumigatus in the Netherlands.', answer the user's query. |
What is the biomedical concept corresponding to 'a. fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus var. elli... | [
"aspergillus fumigatus var. albus",
"aspergillus fumigatus var. fumigatus (aspergillus fumigatus var. acolumnaris)",
"aspergillus subgen. fumigati",
"aspergillus aff. fumigatus a30",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus fumigatus af293",
"aspergillus sp. a1... | Given the context 'In this study, we show that molecular dynamics simulations combined with site-directed mutagenesis of amino acid substitutions in the cyp51A gene, correlate to the structure-function relationship of the L98H substitution conferring to MAR in A. fumigatus.', answer the user's query. |
What is the biomedical concept corresponding to 'a. fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus var. elli... | [
"aspergillus fumigatus var. albus",
"aspergillus fumigatus var. fumigatus (aspergillus fumigatus var. acolumnaris)",
"aspergillus subgen. fumigati",
"aspergillus aff. fumigatus a30",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus fumigatus af293",
"aspergillus sp. a1... | Given the context 'Furthermore, the amino acid leucine in codon 98 in A. fumigatus is highly conserved and important for maintaining the structure of the CYP51A protein that is essential for azole docking.
', answer the user's query. |
What is the biomedical concept corresponding to 'red-backed shrike'? | [
"red-backed shrike (lanius collurio)",
"lanius collurio (red-backed shrike)"
] | [
"long-tailed shrike (lanius schach)",
"steppe grey shrike (lanius pallidirostris)",
"rufous-tailed shrike (lanius isabellinus)",
"bull-headed shrike (lanius bucephalus)",
"northern shrike (lanius excubitor)",
"chinese grey shrike (lanius sphenocercus)",
"masked shrike (lanius nubicus)",
"bush duiker (... | Given the context 'To increase our understanding of population dynamics, we analysed time series from six Central European populations of the migratory red-backed shrike Lanius collurio by simultaneously assessing the strength of density dependence, process and sampling variance.', answer the user's query. |
What is the biomedical concept corresponding to 'lanius collurio'? | [
"lanius collurio (red-backed shrike)",
"red-backed shrike (lanius collurio)"
] | [
"lanius collurio collurio",
"lanius collurioides",
"sicyos collinus",
"marasmius collinus (agaricus collinus)",
"suillus collinitus (boletus collinitus)",
"scarus collana (greenband parrotfish)",
"pikelinia colloncura",
"agaricus collinus (marasmius collinus)",
"metrosideros collina var. collina",
... | Given the context 'To increase our understanding of population dynamics, we analysed time series from six Central European populations of the migratory red-backed shrike Lanius collurio by simultaneously assessing the strength of density dependence, process and sampling variance.', answer the user's query. |
What is the biomedical concept corresponding to 'red-backed shrike'? | [
"red-backed shrike (lanius collurio)",
"lanius collurio (red-backed shrike)"
] | [
"long-tailed shrike (lanius schach)",
"steppe grey shrike (lanius pallidirostris)",
"rufous-tailed shrike (lanius isabellinus)",
"bull-headed shrike (lanius bucephalus)",
"northern shrike (lanius excubitor)",
"chinese grey shrike (lanius sphenocercus)",
"masked shrike (lanius nubicus)",
"bush duiker (... | Given the context 'Our findings suggest negative density-dependent regulation of red-backed shrike breeding populations and are consistent with the long-standing hypothesis that conditions in the African staging and wintering areas influence population numbers of species breeding in Europe.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)",
"escherichia/shigella coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia sp.",
"unspecified coliform bacterium",
"colimonas (candidatus colimonas)",
"escherichia coli 1a",
"escherichia coli c",
"colibacter",
"escherichia coli 9.1796",
"candidatus colimonas (colimonas)",
"enterobacteria (enterobacteriaceae)"
] | Given the context 'Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress.
', answer the user's query. |
What is the biomedical concept corresponding to 'neisseria meningitidis'? | [
"micrococcus meningitidis (neisseria meningitidis)",
"neisseria meningitidis (micrococcus meningitidis cerebrospinalis)",
"micrococcus meningitidis cerebrospinalis (neisseria meningitidis)"
] | [
"neisseria meningitidis str. nmb (neisseria meningitidis nmb)",
"neisseria meningitidis (group b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis strain nmb (neisseria meningitidis nmb)",
"neisseria meningitidis (serogroup b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis (ser... | Given the context 'Mapping of the Neisseria meningitidis NadA cell-binding site: relevance of predicted {alpha}-helices in the NH2-terminal and dimeric coiled-coil regions.
', answer the user's query. |
What is the biomedical concept corresponding to 'neisseria meningitidis'? | [
"micrococcus meningitidis (neisseria meningitidis)",
"neisseria meningitidis (micrococcus meningitidis cerebrospinalis)",
"micrococcus meningitidis cerebrospinalis (neisseria meningitidis)"
] | [
"neisseria meningitidis str. nmb (neisseria meningitidis nmb)",
"neisseria meningitidis (group b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis strain nmb (neisseria meningitidis nmb)",
"neisseria meningitidis (serogroup b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis (ser... | Given the context 'NadA is a trimeric autotransporter protein of Neisseria meningitidis belonging to the group of oligomeric coiled-coil adhesins.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'It is implicated in the colonization of the human upper respiratory tract by hypervirulent serogroup B N. meningitidis strains and is part of a multiantigen anti-serogroup B vaccine.', answer the user's query. |
What is the biomedical concept corresponding to 'n. meningitidis'? | [
"micrococcus meningitidis (neisseria meningitidis)",
"neisseria meningitidis (micrococcus meningitidis cerebrospinalis)",
"micrococcus meningitidis cerebrospinalis (neisseria meningitidis)"
] | [
"neisseria meningitidis str. nmb (neisseria meningitidis nmb)",
"neisseria meningitidis strain nmb (neisseria meningitidis nmb)",
"neisseria meningitidis (serogroup b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis (group b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis (ser... | Given the context 'It is implicated in the colonization of the human upper respiratory tract by hypervirulent serogroup B N. meningitidis strains and is part of a multiantigen anti-serogroup B vaccine.', answer the user's query. |
What is the biomedical concept corresponding to 'rabbit'? | [
"rabbit (oryctolagus cuniculus)",
"european rabbit (oryctolagus cuniculus)",
"domestic rabbit (oryctolagus cuniculus)",
"rabbits (oryctolagus cuniculus)",
"japanese white rabbit (oryctolagus cuniculus)",
"oryctolagus cuniculus (japanese white rabbit)",
"lepus cuniculus (oryctolagus cuniculus)"
] | [
"oryctolagus cuniculus cuniculus (lepus cuniculus cuniculus)",
"rabbits and hares (leporidae)",
"lepus cuniculus cuniculus (oryctolagus cuniculus cuniculus)",
"marsh rabbit (sylvilagus palustris)",
"leporidae (rabbits and hares)",
"swamp rabbit (sylvilagus aquaticus)",
"oryctolagus sp. 'rabbit_od'",
"... | Given the context 'In this study, to better define the NadA cell binding site, we exploited (i) a panel of NadA mutants lacking sequences along the coiled-coil stalk and (ii) several oligoclonal rabbit antibodies, and their relative Fab fragments, directed to linear epitopes distributed along the NadA ectodomain.', answer the user's query. |
What is the biomedical concept corresponding to 'burkholderia cenocepacia'? | [
"burkholderia cenocepacia (burkholderia cepacia genomovar iii)",
"burkholderia cepacia genomovar iii (burkholderia cenocepacia)"
] | [
"burkholderia cenocepacia kc-01",
"pseudomonas cepacia (burkholderia cepacia)",
"burkholderia cepacia (burkholderia cepacia genomovar i)",
"burkholderia cf. cepacia",
"burkholderia cepacia j2315 (burkholderia cenocepacia j2315)",
"burkholderia cenocepacia str. bc7 (burkholderia cenocepacia bc7)",
"burkh... | Given the context 'The Burkholderia cenocepacia LysR-type transcriptional regulator ShvR influences expression of quorum-sensing, protease, type II secretion, and afc genes.
Burkholderia cenocepacia is a significant opportunistic pathogen in individuals with cystic fibrosis.', answer the user's query. |
What is the biomedical concept corresponding to 'burkholderia cenocepacia'? | [
"burkholderia cenocepacia (burkholderia cepacia genomovar iii)",
"burkholderia cepacia genomovar iii (burkholderia cenocepacia)"
] | [
"burkholderia cenocepacia kc-01",
"pseudomonas cepacia (burkholderia cepacia)",
"burkholderia cepacia (burkholderia cepacia genomovar i)",
"burkholderia cf. cepacia",
"burkholderia cepacia j2315 (burkholderia cenocepacia j2315)",
"burkholderia cenocepacia str. bc7 (burkholderia cenocepacia bc7)",
"burkh... | Given the context 'The Burkholderia cenocepacia LysR-type transcriptional regulator ShvR influences expression of quorum-sensing, protease, type II secretion, and afc genes.
Burkholderia cenocepacia is a significant opportunistic pathogen in individuals with cystic fibrosis.', answer the user's query. |
What is the biomedical concept corresponding to 'aeromonas hydrophila'? | [
"aeromonas hydrophila (chester 1901) stanier 1943 (approved lists 1980) (aeromonas hydrophila)",
"aeromonas hydrophila (aeromonas hydrophila (chester 1901) stanier 1943 (approved lists 1980))",
"bacterium hydrophilum (aeromonas hydrophila)",
"pseudomonas hydrophila (aeromonas hydrophila)",
"proteus hydrophi... | [
"aeromonas hydrophila subsp. hydrophila",
"aeromonas hydrophila wi",
"aeromonas hydrophila j-1",
"aeromonas hydrophila e1 (aeromonas hydrophila strain e1)",
"aeromonas hydrophila strain e1 (aeromonas hydrophila e1)",
"aeromonas veronii biovar veronii (aeromonas veronii bv. veronii)",
"aeromonas hydrophi... | Given the context 'Assembly of the type II secretion system: identification of ExeA residues critical for peptidoglycan binding and secretin multimerization.
Aeromonas hydrophila secretes a number of protein toxins across the outer membrane via the type II secretion system (T2SS).', answer the user's query. |
What is the biomedical concept corresponding to 'mycobacterium tuberculosis'? | [
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980))",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (mycobacterium tuberculosis)",
"bacillus tuberculosis (mycobacterium tuberculosis)",
"bacterium tuberculo... | [
"mycobacterium tuberculosis subsp. tuberculosis",
"mycobacterium tuberculosis complex bacterium (mycobacterium tuberculosis complex sp.)",
"mycobacterium tuberculosis complex (mycobacterium complex)",
"mycobacterium tuberculosis hm",
"mycobacterium tuberculosis h37rv (mycobacterium tuberculosis strain h37rv... | Given the context 'Functional analysis of molybdopterin biosynthesis in mycobacteria identifies a fused molybdopterin synthase in Mycobacterium tuberculosis.
', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980))",
"bacillus tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 19... | [
"mycobacterium tuberculosis subsp. tuberculosis",
"mycobacterium tuberculosis complex bacterium (mycobacterium tuberculosis complex sp.)",
"mycobacterium tuberculosis complex (mycobacterium complex)",
"mycobacterium tuberculosis hm",
"mycobacterium tuberculosis var. bovis (mycobacterium tuberculosis variant... | Given the context 'A mutant of M. tuberculosis lacking the moaA1-moaD1 gene cluster and a derivative in which moaD2 was also deleted were significantly impaired for growth in media containing nitrate as a sole nitrogen source, indicating a reduced availability of MoCo to support the assimilatory function of the MoCo-dependent nitrate reductase, NarGHI.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980))",
"bacillus tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 19... | [
"mycobacterium tuberculosis subsp. tuberculosis",
"mycobacterium tuberculosis complex bacterium (mycobacterium tuberculosis complex sp.)",
"mycobacterium tuberculosis complex (mycobacterium complex)",
"mycobacterium tuberculosis hm",
"mycobacterium tuberculosis var. bovis (mycobacterium tuberculosis variant... | Given the context 'The M. tuberculosis moaD and moaE homologs were further analyzed by expressing these genes in mutant strains of M. smegmatis that lacked one or both of the sole molybdopterin (MPT) synthase-encoding genes, moaD2 and moaE2, and were unable to grow on nitrate, presumably as a result of the loss of MoCo-dependent nitrate assimilatory activity.', answer the user's query. |
What is the biomedical concept corresponding to 'm. smegmatis'? | [
"mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (mycolicibacterium smegmatis)",
"mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980))",
"bacterium smegmatis (mycolicibacterium smegmatis)",
"mycobacterium pa... | [
"mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8)",
"mycobacterium smegmatis mkd8 (mycolicibacterium smegmatis mkd8)",
"mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51)",
"mycobacterium smegmatis 'mc2 155' (mycolicibacterium smegmatis mc2 155)",
"mycolicibacterium smegmatis... | Given the context 'The M. tuberculosis moaD and moaE homologs were further analyzed by expressing these genes in mutant strains of M. smegmatis that lacked one or both of the sole molybdopterin (MPT) synthase-encoding genes, moaD2 and moaE2, and were unable to grow on nitrate, presumably as a result of the loss of MoCo-dependent nitrate assimilatory activity.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980))",
"bacillus tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 19... | [
"mycobacterium tuberculosis subsp. tuberculosis",
"mycobacterium tuberculosis complex bacterium (mycobacterium tuberculosis complex sp.)",
"mycobacterium tuberculosis complex (mycobacterium complex)",
"mycobacterium tuberculosis hm",
"mycobacterium tuberculosis var. bovis (mycobacterium tuberculosis variant... | Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'm. smegmatis'? | [
"mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (mycolicibacterium smegmatis)",
"mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980))",
"bacterium smegmatis (mycolicibacterium smegmatis)",
"mycobacterium pa... | [
"mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8)",
"mycobacterium smegmatis mkd8 (mycolicibacterium smegmatis mkd8)",
"mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51)",
"mycobacterium smegmatis 'mc2 155' (mycolicibacterium smegmatis mc2 155)",
"mycolicibacterium smegmatis... | Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980))",
"bacillus tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 19... | [
"mycobacterium tuberculosis subsp. tuberculosis",
"mycobacterium tuberculosis complex bacterium (mycobacterium tuberculosis complex sp.)",
"mycobacterium tuberculosis complex (mycobacterium complex)",
"mycobacterium tuberculosis hm",
"mycobacterium tuberculosis var. bovis (mycobacterium tuberculosis variant... | Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'm. smegmatis'? | [
"mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (mycolicibacterium smegmatis)",
"mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980))",
"bacterium smegmatis (mycolicibacterium smegmatis)",
"mycobacterium pa... | [
"mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8)",
"mycobacterium smegmatis mkd8 (mycolicibacterium smegmatis mkd8)",
"mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51)",
"mycobacterium smegmatis 'mc2 155' (mycolicibacterium smegmatis mc2 155)",
"mycolicibacterium smegmatis... | Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980))",
"bacillus tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 19... | [
"mycobacterium tuberculosis subsp. tuberculosis",
"mycobacterium tuberculosis complex bacterium (mycobacterium tuberculosis complex sp.)",
"mycobacterium tuberculosis complex (mycobacterium complex)",
"mycobacterium tuberculosis hm",
"mycobacterium tuberculosis var. bovis (mycobacterium tuberculosis variant... | Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', answer the user's query. |
What is the biomedical concept corresponding to 'm. smegmatis'? | [
"mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (mycolicibacterium smegmatis)",
"mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980))",
"bacterium smegmatis (mycolicibacterium smegmatis)",
"mycobacterium pa... | [
"mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8)",
"mycobacterium smegmatis mkd8 (mycolicibacterium smegmatis mkd8)",
"mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51)",
"mycobacterium smegmatis 'mc2 155' (mycolicibacterium smegmatis mc2 155)",
"mycolicibacterium smegmatis... | Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980))",
"bacillus tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 19... | [
"mycobacterium tuberculosis subsp. tuberculosis",
"mycobacterium tuberculosis complex bacterium (mycobacterium tuberculosis complex sp.)",
"mycobacterium tuberculosis complex (mycobacterium complex)",
"mycobacterium tuberculosis hm",
"mycobacterium tuberculosis var. bovis (mycobacterium tuberculosis variant... | Given the context 'By implicating multiple synthase-encoding homologs in MoCo biosynthesis, these results suggest that important cellular functions may be served by their expansion in M. tuberculosis.
', answer the user's query. |
What is the biomedical concept corresponding to 'alfalfa'? | [
"alfalfa (medicago sativa)",
"medicago sativa subsp. sativa (medicago sativa)",
"medicago sativa (medicago sativa subsp. sativa)",
"lucerne (medicago sativa)"
] | [
"yellow-flower alfalfa (medicago sativa subsp. falcata)",
"sickle alfalfa (medicago sativa subsp. falcata)",
"medicago sativa subsp. falcata (yellow-flower alfalfa)",
"barrel medic (medicago truncatula)",
"verticillium alfalfae",
"medicago truncatula (barrel medic)",
"medicago lupulina",
"medicago mar... | Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', answer the user's query. |
What is the biomedical concept corresponding to 'leucena leucocephala'? | [
"leucaena leucocephala (granadillo bobo)",
"jump-and-go (leucaena leucocephala)"
] | [
"leucaena leucocephala subsp. leucocephala",
"arundinicola leucocephala",
"navarretia leucocephala",
"recurvirostra leucocephala (cladorhynchus leucocephalus)",
"depressaria leucocephala",
"cyperus leucocephalus",
"minuartia leucocephaloides (alsine leucocephaloides)",
"kniphofia leucocephala",
"min... | Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', answer the user's query. |
What is the biomedical concept corresponding to 'alfalfa'? | [
"alfalfa (medicago sativa)",
"medicago sativa subsp. sativa (medicago sativa)",
"medicago sativa (medicago sativa subsp. sativa)",
"lucerne (medicago sativa)"
] | [
"yellow-flower alfalfa (medicago sativa subsp. falcata)",
"sickle alfalfa (medicago sativa subsp. falcata)",
"medicago sativa subsp. falcata (yellow-flower alfalfa)",
"barrel medic (medicago truncatula)",
"verticillium alfalfae",
"medicago truncatula (barrel medic)",
"medicago lupulina",
"medicago mar... | Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', answer the user's query. |
What is the biomedical concept corresponding to 'sinorhizobium meliloti'? | [
"sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (sinorhizobium meliloti)",
"sinorhizobium meliloti (sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994)",
"rhizobium meliloti (sinorhizobium meliloti)",
"ensifer meliloti (sinorhizobium meliloti)"
] | [
"sinorhizobium meliloti bv. meliloti",
"sinorhizobium meliloti usda 1021",
"sinorhizobium meliloti usda 1002",
"sinorhizobium meliloti 2011",
"sinorhizobium meliloti m10",
"sinorhizobium meliloti m210",
"sinorhizobium meliloti gr4",
"sinorhizobium meliloti mvii-i (ensifer meliloti mvii-i)",
"sinorhi... | Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', answer the user's query. |
What is the biomedical concept corresponding to 'sinorhizobium medicae'? | [
"sinorhizobium medicae (sinorhizobium medicae rome et al. 1996)",
"sinorhizobium medicae rome et al. 1996 (sinorhizobium medicae)",
"ensifer medicae (sinorhizobium medicae)"
] | [
"sinorhizobium meliloti bv. medicaginis (sinorhizobium meliloti biovar medicaginis)",
"sinorhizobium meliloti biovar medicaginis (sinorhizobium meliloti bv. medicaginis)",
"sinorhizobium medicae m58",
"sinorhizobium medicae m1",
"sinorhizobium medicae a321",
"sinorhizobium meliloti bv. meliloti",
"sinor... | Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', answer the user's query. |
What is the biomedical concept corresponding to 'rhizobium mongolense usda 1844'? | [
"rhizobium mongolense (rhizobium gallicum bv. orientale)",
"rhizobium gallicum bv. orientale (rhizobium mongolense)"
] | [
"rhizobium mongolense usda 1844 (rhizobium mongolense strain usda 1844)",
"rhizobium mongolense strain usda 1844 (rhizobium mongolense usda 1844)",
"rhizobium mongolense str. usda 1844 (rhizobium mongolense usda 1844)",
"rhizobium loessense (rhizobium mongolense subsp. loessense)",
"rhizobium mongolense sub... | Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', answer the user's query. |
What is the biomedical concept corresponding to 'alfalfa'? | [
"alfalfa (medicago sativa)",
"medicago sativa subsp. sativa (medicago sativa)",
"medicago sativa (medicago sativa subsp. sativa)",
"lucerne (medicago sativa)"
] | [
"yellow-flower alfalfa (medicago sativa subsp. falcata)",
"sickle alfalfa (medicago sativa subsp. falcata)",
"medicago sativa subsp. falcata (yellow-flower alfalfa)",
"barrel medic (medicago truncatula)",
"verticillium alfalfae",
"medicago truncatula (barrel medic)",
"medicago lupulina",
"medicago mar... | Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', answer the user's query. |
What is the biomedical concept corresponding to 'alfalfa'? | [
"alfalfa (medicago sativa)",
"medicago sativa subsp. sativa (medicago sativa)",
"medicago sativa (medicago sativa subsp. sativa)",
"lucerne (medicago sativa)"
] | [
"yellow-flower alfalfa (medicago sativa subsp. falcata)",
"sickle alfalfa (medicago sativa subsp. falcata)",
"medicago sativa subsp. falcata (yellow-flower alfalfa)",
"barrel medic (medicago truncatula)",
"verticillium alfalfae",
"medicago truncatula (barrel medic)",
"medicago lupulina",
"medicago mar... | Given the context 'The evidence obtained supports the notion that the sulfate decoration of NFs in LPU83 is not necessary for alfalfa nodulation.
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)"
] | [
"bacillus subtilis subsp. subtilis",
"bacillus subtilis to-a",
"bacillus subtilis strain b2 (bacillus subtilis b2)",
"bacillus subtilis b2 (bacillus subtilis strain b2)",
"bacillus subtilis 168 (bacillus subtilis subsp. subtilis str. 168)",
"bacillus subtilis var. niger (bacillus subtilis subsp. niger)",
... | Given the context 'Mismatch repair modulation of MutY activity drives Bacillus subtilis stationary-phase mutagenesis.
', answer the user's query. |
What is the biomedical concept corresponding to 'b. subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)"
] | [
"bacillus subtilis subsp. subtilis",
"bacillus subtilis strain b2 (bacillus subtilis b2)",
"bacillus subtilis b2 (bacillus subtilis strain b2)",
"bacillus subtilis to-a",
"bacillus subtilis group sp.",
"bacillus subtilis str. b2 (bacillus subtilis b2)",
"bacillus subtilis var. niger (bacillus subtilis s... | Given the context 'In conclusion, our results support the idea that MMR regulation of the mutagenic/antimutagenic properties of MutY promotes stationary-phase mutagenesis in B. subtilis cells.
', answer the user's query. |
What is the biomedical concept corresponding to 'clostridium difficile'? | [
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"flavobacterium difficile",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridium difficile strain e1 (clostridioides... | Given the context 'Mapping interactions between germinants and Clostridium difficile spores.
', answer the user's query. |
What is the biomedical concept corresponding to 'clostridium difficile'? | [
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"flavobacterium difficile",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridium difficile strain e1 (clostridioides... | Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', answer the user's query. |
What is the biomedical concept corresponding to 'c. difficile'? | [
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"flavobacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"clostridium difficile str. bi1 (clostridioides ... | Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', answer the user's query. |
What is the biomedical concept corresponding to 'c. difficile'? | [
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"flavobacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"clostridium difficile str. bi1 (clostridioides ... | Given the context 'Taurocholate (a bile salt) and glycine (an amino acid) have been shown to be important germinants of C. difficile spores.', answer the user's query. |
What is the biomedical concept corresponding to 'c. difficile'? | [
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"flavobacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"clostridium difficile str. bi1 (clostridioides ... | Given the context 'In the present study, we tested a series of glycine and taurocholate analogs for the ability to induce or inhibit C. difficile spore germination.', answer the user's query. |
What is the biomedical concept corresponding to 'c. difficile'? | [
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"flavobacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"clostridium difficile str. bi1 (clostridioides ... | Given the context 'The C. difficile germination machinery also recognizes other hydrophobic amino acids.', answer the user's query. |
What is the biomedical concept corresponding to 'c. difficile'? | [
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"flavobacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"clostridium difficile str. bi1 (clostridioides ... | Given the context 'In contrast, the 6- and 7-hydroxyl groups are required for inhibition of C. difficile spore germination.', answer the user's query. |
What is the biomedical concept corresponding to 'c. difficile'? | [
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"flavobacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"clostridium difficile str. bi1 (clostridioides ... | Given the context 'Similarly, C. difficile spores are able to detect taurocholate analogs with shorter, but not longer, alkyl amino sulfonic acid side chains.', answer the user's query. |
What is the biomedical concept corresponding to 'c. difficile'? | [
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"flavobacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"clostridium difficile str. bi1 (clostridioides ... | Given the context 'Finally, a taurocholate analog with an m-aminobenzenesulfonic acid side chain is a strong inhibitor of C. difficile spore germination.', answer the user's query. |
What is the biomedical concept corresponding to 'c. difficile'? | [
"clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980))",
"clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (clostridioides difficile)",
"peptoclostridium difficile (clostridioides difficile)"
] | [
"eubacterium difficile",
"flavobacterium difficile",
"clostridium difficile gs (clostridioides difficile gs)",
"polytoma difficile",
"clostridium difficile bi1 (clostridioides difficile bi1)",
"clostridioides difficile gs (peptoclostridium difficile gs)",
"clostridium difficile str. bi1 (clostridioides ... | Given the context 'In conclusion, C. difficile spores recognize both amino acids and taurocholate through multiple interactions that are required to bind the germinants and/or activate the germination machinery.
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis strain 'ames ancestor' (bacillus anthracis st... | Given the context 'In vitro studies of peptidoglycan binding and hydrolysis by the Bacillus anthracis germination-specific lytic enzyme SleB.
The Bacillus anthracis endospore loses resistance properties during germination when its cortex peptidoglycan is degraded by germination-specific lytic enzymes (GSLEs).', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis strain 'ames ancestor' (bacillus anthracis st... | Given the context 'In vitro studies of peptidoglycan binding and hydrolysis by the Bacillus anthracis germination-specific lytic enzyme SleB.
The Bacillus anthracis endospore loses resistance properties during germination when its cortex peptidoglycan is degraded by germination-specific lytic enzymes (GSLEs).', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis str. ames ancestor (bacillus anthracis str. '... | Given the context 'As the conditions and limitations for SleB activity are further elucidated, they will enable the development of treatments that stimulate premature germination of B. anthracis spores, greatly simplifying decontamination measures.
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis strain 'ames ancestor' (bacillus anthracis st... | Given the context 'Glucose-dependent activation of Bacillus anthracis toxin gene expression and virulence requires the carbon catabolite protein CcpA.
Sensing environmental conditions is an essential aspect of bacterial physiology and virulence.', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis strain 'ames ancestor' (bacillus anthracis st... | Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', answer the user's query. |
What is the biomedical concept corresponding to 'anthrax'? | [
"anthrax (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)"
] | [
"anthrax",
"anthrenus",
"anthribola",
"anthrax anthrax (musca anthrax)",
"anthribus",
"anthrax subgroup",
"platypeza anthrax",
"lasiancistrus anthrax (pseudolithoxus anthrax)",
"unclassified anthrax",
"anthreptes"
] | Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis str. ames ancestor (bacillus anthracis str. '... | Given the context 'Here it is shown that glucose is an additional signaling molecule recognized by B. anthracis for toxin synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis strain'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis strain 'ames ancestor' (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis str. 'ames ancestor' (bacillus anthracis strain 'ames ancestor')",
"bacillus anthra... | Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mice (mus <genus>) (mus <genus>)",
"mus <genus> (mice (mus <genus>))",
"mice (mus sp.) (mus sp.)",
"mus musculus musculus (eastern european house mouse)",
"eastern european house mouse (mus musculus musculus)",
"western european house mouse (mus musculus domesticus)",
"mus sp. ... | Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis str. ames ancestor (bacillus anthracis str. '... | Given the context 'The data demonstrated that glucose is an important host environment-derived signaling molecule and that CcpA is a molecular link between environmental sensing and B. anthracis pathogenesis.
', answer the user's query. |
What is the biomedical concept corresponding to 'pseudomonas syringae'? | [
"pseudomonas syringae (pseudomonas syringae subsp. syringae)",
"pseudomonas syringae subsp. syringae (pseudomonas syringae)"
] | [
"pseudomonas syringae syringae (pseudomonas syringae pv. syringae)",
"pseudomonas syringae pv. syringae (pseudomonas syringae (pv. syringae))",
"pseudomonas syringae (pv. syringae) (pseudomonas syringae pv. syringae)",
"pseudomonas syringae group genomosp. 1",
"pseudomonas syringae pv. syringae sm",
"pseu... | Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', answer the user's query. |
What is the biomedical concept corresponding to 'p. fluorescens strains'? | [
"bacterium fluorescen (pseudomonas fluorescens)",
"bacillus fluorescens (pseudomonas fluorescens)",
"pseudomonas fluorescens (bacillus fluorescens liquefaciens)"
] | [
"fluorescent pseudomonads (pseudomonas fluorescens group)",
"pseudomonas fluorescens bv. f",
"pseudomonas fluorescens group sp.",
"pseudomonas fluorescens (biotype a) (pseudomonas fluorescens bv. a)",
"pseudomonas fluorescens bv. v",
"pseudomonas fluorescens (biotype c) (pseudomonas fluorescens bv. c)",
... | Given the context 'We also screened a collection of 30 closely related P. fluorescens strains and detected the T3SS genes in all but one of them.', answer the user's query. |
What is the biomedical concept corresponding to 'p. syringae'? | [
"pseudomonas syringae (pseudomonas syringae subsp. syringae)",
"pseudomonas syringae subsp. syringae (pseudomonas syringae)"
] | [
"microsphaera syringae (erysiphe syringae)",
"pseudomonas syringae syringae (pseudomonas syringae pv. syringae)",
"erysiphe syringae (microsphaera syringae)",
"pseudomonas syringae pv. syringae (pseudomonas syringae (pv. syringae))",
"pekinomyia syringae",
"pseudomonas syringae (pv. syringae) (pseudomonas... | Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs.', answer the user's query. |
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