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https://en.wikipedia.org/wiki/Enterovirus%205%E2%80%B2%20cloverleaf%20cis-acting%20replication%20element | The Enterovirus 5′ cloverleaf cis-acting replication element is an RNA element found in the 5′ UTR of Enterovirus genomes. The element has a cloverleaf like secondary structure and is known to be a multifunctional cis-acting replication element (CRE), required for the initiation of negative strand RNA synthesis.
See a... |
https://en.wikipedia.org/wiki/CsrB/RsmB%20RNA%20family | The CsrB RNA is a non-coding RNA that binds to approximately 9 to 10 dimers of the CsrA protein. The CsrB RNAs contain a conserved motif CAGGXXG that is found in up to 18 copies and has been suggested to bind CsrA. The Csr regulatory system has a strong negative regulatory effect on glycogen biosynthesis, glyconeogene... |
https://en.wikipedia.org/wiki/Enterovirus%20cis-acting%20replication%20element | Enterovirus cis-acting replication element is a small RNA hairpin in the coding region of protein 2C as the site in PV1(M) RNA that is used as the primary template for the in vitro uridylylation. The first step in the replication of the plus-stranded poliovirus RNA is the synthesis of a complementary minus strand. This... |
https://en.wikipedia.org/wiki/Equine%20arteritis%20virus%20leader%20TRS%20hairpin%20%28LTH%29 | The equine arteritis virus leader transcription-regulating sequence hairpin (LTH) is as RNA element that is thought to be a key structural element in discontinuous subgenomic RNA synthesis and is critical for leader transcription-regulating sequences (TRS) function. Similar structures have been predicted in other arter... |
https://en.wikipedia.org/wiki/FGF-1%20internal%20ribosome%20entry%20site%20%28IRES%29 | The FGF-1 internal ribosome entry site (IRES) is an RNA element present in the 5' UTR of the mRNA of fibroblast growth factor-1 and allows cap-independent translation. It is thought that FGF-1 internal ribosome entry site (IRES) activity is strictly controlled and highly tissue specific.
References
External links
... |
https://en.wikipedia.org/wiki/FGF-2%20internal%20ribosome%20entry%20site%20%28IRES%29 | The FGF-2 internal ribosome entry site is an RNA element present in the 5' UTR of the mRNA of fibroblast growth factor-2. It has been found that the FGF-2 internal ribosome entry site (IRES) activity is strictly controlled and highly tissue specific. It is thought that translational IRES dependent activation of FGF-2 p... |
https://en.wikipedia.org/wiki/Ctgf/hcs24%20CAESAR | ctgf/hcs24 CAESAR is the name given to the cis-acting RNA element identified in the 3' untranslated region (3'UTR) of the human connective tissue growth factor (CTGF) messenger RNA. This gene is also known as hypertrophic chondrocyte specific 24 (hcs24).
The importance of the 3'UTR in repressing ctgf gene expression ... |
https://en.wikipedia.org/wiki/FIE3%20%28ftz%20instability%20element%203%E2%80%B2%29%20element | The FIE3 (ftz instability element 3′) element is an RNA element found in the 3′ UTR of the fushi tarazu mRNA.
The fushi tarazu gene is essential for the establishment of the Drosophila embryonic body plan. When first expressed in early embryogenesis, fushi tarazu mRNA is uniformly distributed over most of the embryo. S... |
https://en.wikipedia.org/wiki/FinP | FinP encodes an antisense non-coding RNA gene that is complementary to part of the TraJ 5' UTR. The FinOP system regulates the transfer of F-like plasmids. The traJ gene encodes a protein required for transcription from the major transfer promoter, pY. The FinO protein is essential for effective repression, acting by b... |
https://en.wikipedia.org/wiki/FMN%20riboswitch | The FMN riboswitch (also known as RFN element) is a highly conserved RNA element which is naturally occurring, and is found frequently in the 5'-untranslated regions of prokaryotic mRNAs that encode for flavin mononucleotide (FMN) biosynthesis and transport proteins. This element is a metabolite-dependent riboswitch th... |
https://en.wikipedia.org/wiki/GadY | GadY RNA (previously named IS183 in ) is a non-coding RNA. The GadY gene is located on between and on the opposite strand to the GadX and GadW genes. GadY can form base pairs with the 3' UTR of its target mRNA gadX, this pairing is thought to confer increased stability to the transcript, allowing accumulation of gadX (... |
https://en.wikipedia.org/wiki/K10%20transport/localisation%20element%20%28TLS%29 | The K10 transport/localisation element (TLS) is a 44 nucleotide K10 TLS regulatory element from Drosophila melanogaster. K10 TLS is responsible for the transport and anterior localisation of K10 mRNA and acts to establish dorsoventral polarity in the oocyte. It was discovered by Julia Serano.
References
External link... |
https://en.wikipedia.org/wiki/GAIT%20element | The gamma interferon inhibitor of translation element or GAIT element is a cis-acting RNA element located in the 3'-UTR of the ceruloplasmin (Cp) mRNA.
The GAIT element forms a stem-loop secondary structure. The GAIT element is involved in selective translational silencing of the Cp transcript within monocytic cells, ... |
https://en.wikipedia.org/wiki/Gammaretrovirus%20core%20encapsidation%20signal | The Gammaretrovirus core encapsidation signal is an RNA element known to be essential for stable dimerisation and efficient genome packaging during virus assembly. Dimerisation of the viral RNA genomes is proposed to act as an RNA conformational switch which exposes conserved UCUG elements and enables efficient genome ... |
https://en.wikipedia.org/wiki/G-CSF%20factor%20stem-loop%20destabilising%20element | The G-CSF factor stem-loop destabilising element (SLDE) is an RNA element secreted by fibroblasts and endothelial cells in response to the inflammatory mediators interleukin-1 (IL-1) and tumour necrosis factor-alpha and by activated macrophages. The synthesis of G-CSF is regulated both transcriptionally and through con... |
https://en.wikipedia.org/wiki/GcvB%20RNA | The gcvB RNA gene encodes a small non-coding RNA involved in the regulation of a number of amino acid transport systems as well as amino acid biosynthetic genes. The GcvB gene is found in enteric bacteria such as Escherichia coli. GcvB regulates genes by acting as an antisense binding partner of the mRNAs for each regu... |
https://en.wikipedia.org/wiki/GlmS%20glucosamine-6-phosphate%20activated%20ribozyme | The glucosamine-6-phosphate riboswitch ribozyme ( glmS ribozyme) is an RNA structure that resides in the 5' untranslated region (UTR) of the mRNA transcript of the glmS gene. This RNA regulates the glmS gene by responding to concentrations of a specific metabolite, glucosamine-6-phosphate (GlcN6P), in addition to catal... |
https://en.wikipedia.org/wiki/Glycine%20riboswitch | The bacterial glycine riboswitch is an RNA element that can bind the amino acid glycine. Glycine riboswitches usually consist of two metabolite-binding aptamer domains with similar structures in tandem. The aptamers were originally thought to cooperatively bind glycine to regulate the expression of downstream genes. In... |
https://en.wikipedia.org/wiki/Group%20I%20catalytic%20intron | Group I introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of nine paired regions (P1-P9). These fold to essentially two domains – the P4-P6 domain (formed from the stacking of P5, P4, P6 an... |
https://en.wikipedia.org/wiki/Mir-103/107%20microRNA%20precursor | The miR-103 microRNA precursor (homologous to miR-107), is a short non-coding RNA gene involved in gene regulation.
miR-103 and miR-107 have now been predicted or experimentally confirmed in human.
microRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucle... |
https://en.wikipedia.org/wiki/Hairy%20RNA%20localisation%20element%20%28HLE%29 | The hairy localisation element (HLE) is an RNA element found in the 3' UTR of the hairy gene. HLE contains two stem-loops. HLE is essential for the mediation of apical localisation and the two stem-loop structures act to allow the recognition of hairy mRNA by the localisation machinery. HLE is found in Drosophila speci... |
https://en.wikipedia.org/wiki/Heat%20shock%20protein%2070%20%28Hsp70%29%20internal%20ribosome%20entry%20site%20%28IRES%29 | The heat shock protein 70 (Hsp70) internal ribosome entry site (IRES) is an RNA element that allows cap independent translation during conditions such as heat shock and stress. It has been shown that the 216 nucleotide long 5' UTR contains internal ribosome entry site activity.
References
External links
Cis-regul... |
https://en.wikipedia.org/wiki/Mucor%20hiemalis | Mucor hiemalis is among the zygosporic fungi found in unspoiled foods. It has different industrial importance as biotransforming agents of pharmacological and chemical compounds.
Morphology and cell structure
Mucor hiemalis grows in expanding gray colonies. It grows branched sporangiophores that yielding yellow to da... |
https://en.wikipedia.org/wiki/Hepatitis%20C%20stem-loop%20IV | The Hepatitis C stem-loop IV is part of a putative RNA element found in the NS5B coding region. This element along with stem-loop VII, is important (but not essential) for colony formation, though its exact function and mechanism are unknown.
See also
Hepatitis C alternative reading frame stem-loop
Hepatitis C viru... |
https://en.wikipedia.org/wiki/Mir-148/mir-152%20microRNA%20precursor%20family | In molecular biology, miR-148 is a microRNA whose expression has been demonstrated in human (MI0000253), mouse (MI0000550), rat (MI0000616) and zebrafish (MI0002015). miR-148 has also been predicted in chicken (MI0001189).
These predicted hairpin precursor sequence are related to those of miR-152, which has been expr... |
https://en.wikipedia.org/wiki/Hepatitis%20C%20virus%203%27X%20element | The hepatitis C virus 3′X element is an RNA element which contains three stem-loop structures that are essential for replication.
See also
Hepatitis C alternative reading frame stem-loop
Hepatitis C stem-loop IV
Hepatitis C virus stem-loop VII
Hepatitis C virus (HCV) cis-acting replication element (CRE)
Referenc... |
https://en.wikipedia.org/wiki/Hepatitis%20C%20virus%20cis-acting%20replication%20element | The Hepatitis C virus (HCV) cis-acting replication element (CRE) is an RNA element which is found in the coding region of the RNA-dependent RNA polymerase NS5B. Mutations in this family have been found to cause a blockage in RNA replication and it is thought that both the primary sequence and the structure of this elem... |
https://en.wikipedia.org/wiki/Hepatitis%20C%20virus%20internal%20ribosome%20entry%20site | The Hepatitis C virus internal ribosome entry site, or HCV IRES, is an RNA structure within the 5'UTR of the HCV genome that mediates cap-independent translation initiation.
Protein translation of most eukaryotic mRNAs occurs by a cap-dependent mechanism and requires association of Met-tRNAiMet, several eukaryotic ini... |
https://en.wikipedia.org/wiki/Hepatitis%20C%20virus%20stem-loop%20VII | Hepatitis C virus stem-loop VII is a regulatory element found in the coding region of the RNA-dependent RNA polymerase gene, NS5B. Similarly to stem-loop IV, the stem-loop structure is important (but not essential) for colony formation, though its exact function and mechanism are unknown.
See also
Hepatitis C altern... |
https://en.wikipedia.org/wiki/Hepatitis%20delta%20virus%20ribozyme | The hepatitis delta virus (HDV) ribozyme is a non-coding RNA found in the hepatitis delta virus that is necessary for viral replication and is the only known human virus that utilizes ribozyme activity to infect its host. The ribozyme acts to process the RNA transcripts to unit lengths in a self-cleavage reaction durin... |
https://en.wikipedia.org/wiki/Mir-192/215%20microRNA%20precursor | The miR-192 microRNA precursor (homologous to miR-215), is a short non-coding RNA
gene involved in gene regulation.
miR-192 and miR-215 have now been predicted or experimentally confirmed in mouse and human.
microRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a... |
https://en.wikipedia.org/wiki/Hepatitis%20E%20virus%20cis-reactive%20element | The hepatitis E virus cis-reactive element is an RNA element that is believed to be essential for "some step in gene expression". The mutation of this element resulted in hepatitis E strains which were unable to infect rhesus macaques (Macaca mulatta).
References
External links
Cis-regulatory RNA elements
Hepevir... |
https://en.wikipedia.org/wiki/HgcC%20family%20RNA | HgcC is a small non coding RNA (ncRNA). It is the functional product of a gene which is not translated into protein.
This ncRNA gene was originally identified by computationally searching the genome of the thermophilic archea Methanococcus jannaschii for non-coding regions of high guanine-cytosine (GC) content. The o... |
https://en.wikipedia.org/wiki/HgcE%20RNA | The HgcE RNA (also known as Pf3 RNA) gene is a non-coding RNA that was identified computationally and experimentally verified in AT-rich hyperthermophiles. The genes in the screen were named hgcA through hgcG ("high GC"). The HgcE has been renamed as Pf3 and identified as an H/ACA snoRNA that is suggested to target 23... |
https://en.wikipedia.org/wiki/HgcF%20RNA | The HgcF RNA gene is a non-coding RNA identified computationally and experimentally verified in AT-rich hyperthermophiles. The genes were named hgcA through hgcG ("high GC"). It was later identified as Pab35 H/ACA snoRNA with rRNA targets.
See also
HgcC family RNA
HgcE RNA
HgcG RNA
SscA RNA
References
External link... |
https://en.wikipedia.org/wiki/Mir-46/mir-47/mir-281%20microRNA%20precursor%20family | In molecular biology, mir-46 (MI0000017) and mir-47 (MI0000018) are microRNA expressed in C. elegans from related hairpin precursor sequences. The predicted hairpin precursor sequences for Drosophila mir-281 (MI0000366, MI0000370) are also related and, hence, belong to this family. The hairpin precursors (represented... |
https://en.wikipedia.org/wiki/Mir-8/mir-141/mir-200%20microRNA%20precursor%20family | The miR-8 microRNA precursor (homologous to miR-141, miR-200, miR-236), is a short non-coding RNA
gene involved in gene regulation. miR-8 in Drosophila melanogaster is expressed from the 3' arm of related precursor hairpins (represented here), along with miR-200, miR-236, miR-429 and human and mouse homolog miR-141. Me... |
https://en.wikipedia.org/wiki/Mir-9/mir-79%20microRNA%20precursor%20family | The miR-9 microRNA (homologous to miR-79), is a short non-coding RNA gene involved in gene regulation. The mature ~21nt miRNAs are processed from hairpin precursor sequences by the Dicer enzyme. The dominant mature miRNA sequence is processed from the 5' arm of the mir-9 precursor, and from the 3' arm of the mir-79 pr... |
https://en.wikipedia.org/wiki/PrrB/RsmZ%20RNA%20family | The PrrB/RsmZ RNA family are a group of related non-coding RNA molecules found in bacteria. PrrB RNA is able to phenotypically complement gacS and gacA mutants and is itself regulated by the GacS-GacA two-component signal transduction system. Inactivation of the prrB gene in Pseudomonas fluorescens F113 resulted in a s... |
https://en.wikipedia.org/wiki/Pyrococcus%20C/D%20box%20small%20nucleolar%20RNA | In molecular biology, Pyrococcus C/D box small nucleolar RNA are non-coding RNA (ncRNA) molecules identified in the archaeal genus Pyrococcus which function in the modification of ribosomal RNA (rRNA) and transfer RNA (tRNA). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell, which i... |
https://en.wikipedia.org/wiki/SraC/RyeA%20RNA | The SraC/RyeA RNA is a non-coding RNA that was discovered in E. coli during two large scale screens for RNAs. The function of this RNA is currently unknown. This RNA overlaps the SdsR/RyeB RNA on the opposite strand suggesting that the two RNAs may act in a concerted manner.
References
External links
Non-coding ... |
https://en.wikipedia.org/wiki/OmrA-B%20RNA | The OmrA-B RNA gene family (also known as SraE RNA, RygA and RygB and OmrA and OmrB) is a pair of homologous OmpR-regulated small non-coding RNA that was discovered in E. coli during two large-scale screens. OmrA-B is highly abundant in stationary phase, but low levels could be detected in exponentially growing cells a... |
https://en.wikipedia.org/wiki/Snake%20H/ACA%20box%20small%20nucleolar%20RNA | In molecular biology, Snake H/ACA box small nucleolar RNA refers to a number of very closely related non-coding RNA (ncRNA) genes identified in snakes which have been predicted to be small nucleolar RNAs (snoRNAs). This type of ncRNA is involved in the biogenesis of other small nuclear RNAs and are often referred to as... |
https://en.wikipedia.org/wiki/Infectious%20bronchitis%20virus%20D-RNA | The Infectious bronchitis virus D-RNA is an RNA element known as defective RNA or D-RNA. This element is thought to be essential for viral replication and efficient packaging of avian infectious bronchitis virus (IBV) particles.
Coronavirus D-RNA like that of IBV, are produced during high multiplicity of infection and... |
https://en.wikipedia.org/wiki/Insertion%20sequence%20IS1222%20ribosomal%20frameshifting%20element | The Insertion sequence IS1222 ribosomal frameshifting element is an RNA element found in the insertion sequence IS222. The ribosomal frameshifting element stimulates frameshifting which is known to be required for transposition.
References
External links
Cis-regulatory RNA elements |
https://en.wikipedia.org/wiki/Insulin-like%20growth%20factor%20II%20IRES | The insulin-like growth factor II (IGF-II) internal ribosome entry site IRES is found in the 5' UTR of IGF-II leader 2 mRNA. This RNA element allows cap-independent translation of the mRNA and it is thought that this family may facilitate a continuous IGF-II production in rapidly dividing cells during development. Ribo... |
https://en.wikipedia.org/wiki/Interferon%20gamma%205%27%20UTR%20regulatory%20element | Interferon gamma 5' UTR regulatory elements are a family of regulatory RNAs. This family represents a pseudoknot containing stem-loop structure found in the 5' UTR of interferon-gamma mRNA. This structure is thought to be involved in translational regulation and the pseudoknot has been found to activate protein kinase ... |
https://en.wikipedia.org/wiki/Iron%20response%20element | In molecular biology, the iron response element or iron-responsive element (IRE) is a short conserved stem-loop which is bound by iron response proteins (IRPs, also named IRE-BP or IRBP). The IRE is found in UTRs (untranslated regions) of various mRNAs whose products are involved in iron metabolism. For example, the m... |
https://en.wikipedia.org/wiki/IS061%20RNA | The ISO61 (IsrA) RNA is a bacterial non-coding RNA that is found between the abgR and ydaL genes in Escherichia coli and Shigella flexneri. It was discovered using a computational screen of the E. coli genome. Subsequent characterisation of ISO61 region has revealed that the reverse strand is actually a CsrA binding n... |
https://en.wikipedia.org/wiki/IS102%20RNA | The IS102 RNA is a non-coding RNA that is found in bacteria such as Shigella flexneri and Escherichia coli. The RNA is 208 nucleotides in length and found between the yeeP and flu genes. This RNA was identified in a computational screen of E. coli. The function of this RNA is unknown.
See also
IS061 RNA
IS128 RNA
Re... |
https://en.wikipedia.org/wiki/Tymovirus/pomovirus%20tRNA-like%203%27%20UTR%20element | The tymoviruses/pomovirusesfamily tRNA-like 3' UTR element is an RNA element found in the 3' UTR of some viruses. This element acts in conjunction with UPSK RNA and a 5'-cap to enhance translation. The secondary structure of this RNA element is a cloverleaf that resembles tRNA.
References
External links
Cis-regul... |
https://en.wikipedia.org/wiki/IS128%20RNA | The IS128 RNA is a non-coding RNA found in bacteria such as Escherichia coli and Shigella flexneri. The RNA is 209 nucleotides in length. It is found between the sseA and sseB genes. The IS128 RNA was initially identified in a computational screen of the E. coli genome. The function of this RNA is unknown.
See also
I... |
https://en.wikipedia.org/wiki/Leucine%20operon%20leader | The Leucine operon leader is an RNA element found upstream of the first gene in the Leucine biosynthetic operon. The leader sequence can assume two different secondary structures known as the terminator and the anti-terminator structure. The leader also codes for very short peptide sequence that is rich in leucine amin... |
https://en.wikipedia.org/wiki/L-myc%20internal%20ribosome%20entry%20site%20%28IRES%29 | The L-myc internal ribosome entry site (IRES) is an RNA element present in the 5' UTR of the mRNA of L-myc that allows cap-independent translation. L-myc undergoes translation via the internal ribosome entry site and bypasses the typical eukaryotic cap-dependent translation pathway [1]. The myc family of genes when ex... |
https://en.wikipedia.org/wiki/Luteovirus%20cap-independent%20translation%20element | The Barley yellow dwarf virus-like cap-independent translation element (BTE) is an RNA element found in the 3' UTR of some luteoviruses. This element mediates translation of genomic RNA and subgenomic RNA1 (sgRNA1).
BTEs have a consensus sequence, GGAUCCUGGGAAACAGG, embedded in series of three to six stem-loops that... |
https://en.wikipedia.org/wiki/YdaO/yuaA%20leader | The YdaO/YuaA leader (now called the cyclic di-AMP riboswitch) is a conserved RNA structure found upstream of the ydaO and yuaA genes in Bacillus subtilis and related genes in other bacteria. Its secondary structure and gene associations were predicted by bioinformatics.
These RNAs function as riboswitches, and sense ... |
https://en.wikipedia.org/wiki/Lysine%20riboswitch | The Lysine riboswitch is a metabolite binding RNA element found within certain messenger RNAs that serve as a precision sensor for the amino acid lysine. Allosteric rearrangement of mRNA structure is mediated by ligand binding, and this results in modulation of gene expression. Lysine riboswitch are most abundant in Ba... |
https://en.wikipedia.org/wiki/MicC%20RNA |
The MicC non-coding RNA (previously known as IS063 ) is located between the ompN and ydbK genes in E. coli. This Hfq-associated RNA is thought to be a regulator of the expression level of the OmpC porin protein, with a 5′ region of 22 nucleotides potentially forming an antisense interaction with the ompC mRNA. Along w... |
https://en.wikipedia.org/wiki/MicF%20RNA | The micF RNA is a non-coding RNA stress response gene found in Escherichia coli and related bacteria that post-transcriptionally controls expression of the outer membrane porin gene ompF. The micF gene encodes a non-translated 93 nucleotide antisense RNA that binds its target ompF mRNA and regulates ompF expression by ... |
https://en.wikipedia.org/wiki/Mir-101%20microRNA%20precursor%20family | miR-101 microRNA precursor is a small non-coding RNA that regulates gene expression. Expression of miR-101 has been validated in both human (MI0000103, MI0000739) and mouse (MI0000148). This microRNA appears to be specific to the vertebrates and has now been predicted or confirmed in a wide range of vertebrate species... |
https://en.wikipedia.org/wiki/Mir-10%20microRNA%20precursor%20family | The mir-10 microRNA precursor is a short non-coding RNA gene involved in gene regulation. It is part of an RNA gene family which contains mir-10, mir-51, mir-57, mir-99 and mir-100. mir-10, mir-99 and mir-100 have now been predicted or experimentally confirmed in a wide range of species. (MIPF0000033, MIPF0000025) mi... |
https://en.wikipedia.org/wiki/Mir-124%20microRNA%20precursor%20family | The miR-124 microRNA precursor is a small non-coding RNA molecule that has been identified in flies (MI0000373), nematode worms (MI0000302), mouse (MI0000150) and human (MI0000443). The mature ~21 nucleotide microRNAs are processed from hairpin precursor sequences by the Dicer enzyme, and in this case originates from ... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20296A/B | In molecular biology, snoRNAs HBII-296A and B belong to the C/D family of snoRNAs.
They are close paralogues sharing the same host gene (FLJ10534) and are predicted to guide 2'O-ribose methylation of the large 28S rRNA at position G4588.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Mir-129%20microRNA%20precursor%20family | The miR-129 microRNA precursor is a small non-coding RNA molecule that regulates gene expression. This microRNA was first experimentally characterised in mouse and homologues have since been discovered in several other species, such as humans, rats and zebrafish. The mature sequence is excised by the Dicer enzyme from ... |
https://en.wikipedia.org/wiki/Mir-130%20microRNA%20precursor%20family | In molecular biology, miR-130 microRNA precursor is a small non-coding RNA that regulates gene expression. This microRNA has been identified in mouse (MI0000156, MI0000408), and in human (MI0000448, MI0000748). miR-130 appears to be vertebrate-specific miRNA and has now been predicted or experimentally confirmed in a r... |
https://en.wikipedia.org/wiki/Mir-133%20microRNA%20precursor%20family | mir-133 is a type of non-coding RNA called a microRNA that was first experimentally characterised in mice. Homologues have since been discovered in several other species including invertebrates such as the fruitfly Drosophila melanogaster. Each species often encodes multiple microRNAs with identical or similar mature s... |
https://en.wikipedia.org/wiki/Mir-135%20microRNA%20precursor%20family | The miR-135 microRNA precursor is a small non-coding RNA that is involved in regulating gene expression. It has been shown to be expressed in human, mouse and rat. miR-135 has now been predicted or experimentally confirmed in a wide range of vertebrate species (MIPF0000028). Precursor microRNAs are ~70 nucleotides in... |
https://en.wikipedia.org/wiki/Mir-156%20microRNA%20precursor | MicroRNA (miRNA) precursor miR156 is a family of plant non-coding RNA. This microRNA has now been predicted or experimentally confirmed in a range of plant species (MIPF0000008). Animal miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. ... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20F1/F2/snoR5a | In molecular biology, Small nucleolar RNA F1/F2/snoR5a refers to a group of related non-coding RNA (ncRNA) molecules which function in the biogenesis of other small nuclear RNAs (snRNAs). These small nucleolar RNAs (snoRNAs) are modifying RNAs and usually located in the nucleolus of the eukaryotic cell which is a major... |
https://en.wikipedia.org/wiki/Mir-15%20microRNA%20precursor%20family | The miR-15 microRNA precursor family is made up of small non-coding RNA genes that regulate gene expression. The family includes the related mir-15a and mir-15b sequences, as well as miR-16-1, miR-16-2, miR-195 and miR-497. These six highly conserved miRNAs are clustered on three separate chromosomes. In humans miR-15a... |
https://en.wikipedia.org/wiki/Mir-160%20microRNA%20precursor%20family | In molecular biology, mir-160 is a microRNA that has been predicted or experimentally confirmed in a range of plant species including Arabidopsis thaliana (mouse-ear cress) and Oryza sativa (rice). miR-160 is predicted to bind complementary sites in the untranslated regions of auxin response factor genes to regulate th... |
https://en.wikipedia.org/wiki/Mir-166%20microRNA%20precursor | The plant mir-166 microRNA precursor is a small non-coding RNA gene. This microRNA (miRNA) has now been predicted or experimentally confirmed in a wide range of plant species. microRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In this... |
https://en.wikipedia.org/wiki/Mir-16%20microRNA%20precursor%20family | The miR-16 microRNA precursor family is a group of related small non-coding RNA genes that regulates gene expression. miR-16, miR-15, mir-195 and miR-497 are related microRNA precursor sequences from the mir-15 gene family (). This microRNA family appears to be vertebrate specific and its members have been predicted or... |
https://en.wikipedia.org/wiki/Mir-172%20microRNA%20precursor%20family | The mir-172 microRNA is thought to target mRNAs coding for APETALA2-like transcription factors. It has been verified experimentally in the model plant, Arabidopsis thaliana (mouse-ear cress). The mature sequence is excised from the 3' arm of the hairpin.
References
Further reading
External links
MI0000215
MI00... |
https://en.wikipedia.org/wiki/Mir-17%20microRNA%20precursor%20family | The miR-17 microRNA precursor family are a group of related small non-coding RNA genes called microRNAs that regulate gene expression. The microRNA precursor miR-17 family, includes miR-20a/b, miR-93, and miR-106a/b. With the exception of miR-93, these microRNAs are produced from several microRNA gene clusters, which ... |
https://en.wikipedia.org/wiki/Mir-181%20microRNA%20precursor | In molecular biology miR-181 microRNA precursor is a small non-coding RNA molecule. MicroRNAs (miRNAs) are transcribed as ~70 nucleotide precursors and subsequently processed by the RNase-III type enzyme Dicer to give a ~22 nucleotide mature product. In this case the mature sequence comes from the 5' arm of the precurs... |
https://en.wikipedia.org/wiki/Mir-194%20microRNA%20precursor%20family | In molecular biology, miR-194 microRNA precursor is a small non-coding RNA gene that regulated gene expression. Its expression has been verified in mouse (MI0000236, MI0000733) and in human (MI0000488, MI0000732). mir-194 appears to be a vertebrate-specific miRNA and has now been predicted or experimentally confirmed i... |
https://en.wikipedia.org/wiki/Mir-196%20microRNA%20precursor%20family | miR-196 is a non-coding RNA called a microRNA that has been shown to be expressed in humans (MI0000238, MI0000279) and mice (MI0000552, MI0000553).
miR-196 appears to be a vertebrate specific microRNA and has now been predicted or experimentally confirmed in a wide range of vertebrate species (MIPF0000031). In many sp... |
https://en.wikipedia.org/wiki/Mir-199%20microRNA%20precursor | The miR-199 microRNA precursor is a short non-coding RNA
gene involved in gene regulation.
miR-199 genes have now been predicted or experimentally confirmed in mouse, human and a further 21 other species. microRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22... |
https://en.wikipedia.org/wiki/Mir-19%20microRNA%20precursor%20family | There are 89 known sequences today in the microRNA 19 (miR-19) family but it will change quickly. They are found in a large number of vertebrate species. The miR-19 microRNA precursor is a small non-coding RNA molecule that regulates gene expression. Within the human and mouse genome there are three copies of this micr... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20psi18S-841/snoR66 | In molecular biology, the psi18S-841 is a member of the H/ACA class of snoRNA. This family is responsible for guiding the modification of uridine 841 in Drosophila 18S rRNA to pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Mir-1%20microRNA%20precursor%20family | The miR-1 microRNA precursor is a small micro RNA that regulates its target protein's expression in the cell. microRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give products at ~22 nucleotides. In this case the mature sequence comes from the 3' arm of the precurs... |
https://en.wikipedia.org/wiki/MiR-218%20microRNA%20precursor%20family | miR-218 microRNA precursor is a small non-coding RNA that regulates gene expression by antisense binding.
miR-218 appears to be a vertebrate specific microRNA and has now been predicted and experimentally confirmed in a wide range of vertebrate species. The extents of the hairpin precursors are not known. In this ca... |
https://en.wikipedia.org/wiki/Mir-219%20microRNA%20precursor%20family | In molecular biology, the microRNA miR-219 was predicted in vertebrates by conservation between human, mouse and pufferfish and cloned in pufferfish. It was later predicted and confirmed experimentally in Drosophila. Homologs of miR-219 have since been predicted or experimentally confirmed in a wide range of species, ... |
https://en.wikipedia.org/wiki/Mir-24%20microRNA%20precursor%20family | The miR-24 microRNA precursor is a small non-coding RNA molecule that regulates gene expression. microRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a mature ~22 nucleotide product. In this case the mature sequence comes from the 3' arm of the precursor. The m... |
https://en.wikipedia.org/wiki/Mir-26%20microRNA%20precursor%20family |
Origins
The miR-26 microRNA is a small non-coding RNA that is involved in regulating gene expression. The miR-26 family is composed of miR-26a-1, miR-26a-2 and miR-26b located in chromosomes 3, 12 and 2, respectively. Pre-miR-26 with stem-loop structure is processed into mature miR-26 by a series of enzymes of intra... |
https://en.wikipedia.org/wiki/Mir-29%20microRNA%20precursor | The miR-29 microRNA precursor, or pre-miRNA, is a small RNA molecule in the shape of a stem-loop or hairpin. Each arm of the hairpin can be processed into one member of a closely related family of short non-coding RNAs that are involved in regulating gene expression. The processed, or "mature" products of the precursor... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R105/R108 | In molecular biology, Small nucleolar RNA R105/R108 refers to a group of related non-coding RNA (ncRNA) molecules which function in the biogenesis of other small nuclear RNAs (snRNAs). These small nucleolar RNAs (snoRNAs) are modifying RNAs and usually located in the nucleolus of the eukaryotic cell which is a major si... |
https://en.wikipedia.org/wiki/Mir-2%20microRNA%20precursor | The mir-2 microRNA family includes the microRNA genes mir-2 and mir-13 (MIPF0000049). Mir-2 is widespread in invertebrates, and it is the largest family of microRNAs in the model species Drosophila melanogaster. MicroRNAs from this family are produced from the 3' arm of the precursor hairpin. Leaman et al. showed that ... |
https://en.wikipedia.org/wiki/Mir-30%20microRNA%20precursor | miR-30 microRNA precursor is a small non-coding RNA that regulates gene expression. Animal microRNAs are transcribed as pri-miRNA (primary miRNA) of varying length which in turns are processed in the nucleus by Drosha into ~70 nucleotide stem-loop precursor called pre-miRNA (precursor miRNA) and subsequently processed ... |
https://en.wikipedia.org/wiki/Mir-34%20microRNA%20precursor%20family | The miR-34 microRNA precursor family are non-coding RNA molecules that, in mammals, give rise to three major mature miRNAs. The miR-34 family members were discovered computationally and later verified experimentally. The precursor miRNA stem-loop is processed in the cytoplasm of the cell, with the predominant miR-34 ma... |
https://en.wikipedia.org/wiki/Mir-395%20microRNA%20precursor%20family | mir-395 is a non-coding RNA called a microRNA that was identified in both Arabidopsis thaliana and Oryza sativa computationally and was later experimentally verified. mir-395 is thought to target mRNAs coding for ATP sulphurylases. The mature sequence is excised from the 3' arm of the hairpin.
miR-395 is upregulated i... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R11/Z151 | In molecular biology, Small nucleolar RNA Z151 (homologous to R11) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known a... |
https://en.wikipedia.org/wiki/Mir-399%20microRNA%20precursor%20family | mir-399 is a microRNA that was identified in both Arabidopsis thaliana and Oryza sativa computationally and was later experimentally verified. mir-399 is thought to target mRNAs coding for a phosphate transporter. The mature sequence is excised from the 3' arm of the hairpin. There are multiple copies of MIR399 in each... |
https://en.wikipedia.org/wiki/Mir-6%20microRNA%20precursor | The mir-6 microRNA precursor is a precursor microRNA specific to Drosophila species. In Drosophila melanogaster there are three mir-6 paralogs called dme-mir-6-1, dme-mir-6-2, dme-mir-6-3, which are clustered together in the genome. The extents of these hairpin precursors are estimated based on hairpin prediction. Eac... |
https://en.wikipedia.org/wiki/Mir-7%20microRNA%20precursor | This family represents the microRNA (miRNA) precursor mir-7. This miRNA has been predicted or experimentally confirmed in a wide range of species. miRNAs are transcribed as ~70 nucleotide precursors (modelled here) and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In this case the mature... |
https://en.wikipedia.org/wiki/Mir-92%20microRNA%20precursor%20family | The miR-92 microRNAs are short single stranded non-protein coding RNA fragments initially discovered incorporated into an RNP complex with a proposed role of processing RNA molecules and further RNP assembly. Mir-92 has been mapped to the human genome as part of a larger cluster at chromosome 13q31.3, where it is 22 nu... |
https://en.wikipedia.org/wiki/Mir-BART1%20microRNA%20precursor%20family | The mir-BART1 microRNA precursor is found in Human herpesvirus 4 (Epstein–Barr virus) and Cercopithicine herpesvirus 15. mir-BART1 is found in all stages of infection but expression is significantly elevated in the lytic stage. In Epstein-Barr virus, mir-BART1 is found in the intronic regions of the BART (Bam HI-A regi... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R30/Z108 | In molecular biology, Small nucleolar RNA R30/Z108 (snoR30) is a C/D box small nucleolar RNA that acts as a methylation guide for 18S ribosomal RNA in plants.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Mir-BART2%20microRNA%20precursor%20family | The mir-BART2 microRNA precursor found in Human herpesvirus 4 (Epstein–Barr virus) and Cercopithicine herpesvirus 15. mir-BART2 is expressed in all stages of infection but expression is significantly elevated in the lytic stage. In Epstein-Barr virus, mir-BART2 is found in the intronic regions of the BART (Bam HI-A reg... |
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