source stringlengths 32 209 | text stringlengths 18 1.5k |
|---|---|
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me18S-Gm1358 | In molecular biology, the Small nucleolar RNA Me18S-Gm1358 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me18S-Gm1358 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 18S G-1358.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me18S-Um1356 | In molecular biology, Small nucleolar RNA Me18S-Um1356 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me18S-Um1356 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 18S U-1356.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-Am2589 | In molecular biology, Small nucleolar RNA Me28S-Am2589 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me28S-Am2589 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 28S A-2589.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-Am2634 | In molecular biology, Small nucleolar RNA Me28S-Am2634 (also known as snoRNA Me28S-Am2634) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis of other small nuclear RNAs (snRNAs). Small nucleolar RNAs (snoRNAs) are modifying RNAs and usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis.
snoRNA Me28S-Am2634 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted to guide the 2'-O-methylation of 28S ribosomal RNA (rRNA) residue A-2634.
This snoRNA has currently only been identified in the fly species Drosophila melanogaster.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-Am982 | In molecular biology, Small nucleolar RNA Me28S-Am982 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me28S-Am982 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 28S A-982.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-Cm2645 | In molecular biology, Small nucleolar RNA Me28S-Cm2645 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me28S-Cm2645 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 28S C-2645.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-Cm3227 | In molecular biology, Small nucleolar RNA Me28S-Cm3227 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me28S-Cm3227 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 28S C-3227.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-Cm788 | In molecular biology, Small nucleolar RNA Me28S-Cm788 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell, which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and is also often referred to as a guide RNA.
snoRNA Me28S-Cm788 belongs to the C/D box class of snoRNAs, which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
This family is predicted to direct the 2'-O-methylation of 28S C-788.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-Gm1083 | In molecular biology, Small nucleolar RNA Me28S-Gm1083 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me28S-Gm1083 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 28S G-1083.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-Gm3113 | In molecular biology, Small nucleolar RNA Me28S-Gm3113 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me28S-Gm3113 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 28S G-3113.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-Gm3255 | In molecular biology, Small nucleolar RNA Me28S-Gm3255 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me28S-Gm3255 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 28S G-3255.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Me28S-U3344 | In molecular biology, Small nucleolar RNA Me28S-Um3344 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Me28S-Um3344 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. It is predicted that this family directs 2'-O-methylation of 28S U-3344.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20psi18S-1377 | In molecular biology, Small nucleolar RNA psi18S-1377 (also known as snoRNA psi28S-1377) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
This Drosophila-specific snoRNA is a member of the H/ACA box class of snoRNA and is predicted to be responsible for guiding the modification of uridines 1377 and 1279 to pseudouridine in Drosophila 18S rRNA.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20psi18S-1854 | In molecular biology, Small nucleolar RNA psi28S-3327 (also known as snoRNA psi28S-3327) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
This Drosophila-specific snoRNA is a member of the H/ACA box class of snoRNA and is predicted to be responsible for guiding the modification of uridines 1854 and 1937 to pseudouridine in Drosophila 18S rRNA.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20psi28S-1192 | In molecular biology, Small nucleolar RNA psi28S-1192 (also known as snoRNA psi28S-1192) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
This Drosophila-specific snoRNA is a member of the H/ACA box class of snoRNA and is predicted to be responsible for guiding the modification of uridine 1192 to pseudouridine in Drosophila 28S rRNA.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20psi28S-2876 | In molecular biology, Small nucleolar RNA psi28S-2876 (also known as snoRNA psi28S-2876) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
This Drosophila-specific snoRNA is a member of the H/ACA box class of snoRNA and is predicted to be responsible for guiding the modification of uridines 2876 and 2956 to pseudouridine in Drosophila 28S rRNA.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20psi28S-3316 | In molecular biology, Small nucleolar RNA psi28S-3316 is a member of the H/ACA class of snoRNA. This family is responsible for guiding the modification of uridine 3316 in Drosophila 28S rRNA to pseudouridine
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20psi28S-3327 | In molecular biology, Small nucleolar RNA psi28S-3327 (also known as snoRNA psi28S-3327) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
This Drosophila specific snoRNA is a member of the H/ACA box class of snoRNA and is predicted to be responsible for guiding the modification of uridine 3327 in Drosophila 28S and U1920 in Drosophila 18S rRNA to pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R12 | In molecular biology, Small nucleolar RNA R12 (also known as snoR12) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoR12 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
snoR12 was identified by computational screen of the rice Oryza sativa genome and is predicted to acts as a methylation guide for 25S ribosomal RNA in plants. snoR12 has been alternatively named snoZ44 in Arabidopsis thaliana and snoZ131 in rice.
References
External links
plant snoRNA database
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R16 | In molecular biology, Small nucleolar RNA R16 is a non-coding RNA (ncRNA) molecule identified in plants which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA R16 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
snoR16 was identified in Arabidopsis thaliana. snoRNA R16 is related to another Arabidopsis snoRNA called R40.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R160 | In molecular biology, Small nucleolar RNA R160 (also known as snoR160) is a non-coding RNA (ncRNA) molecule identified in plants which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoR160 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
snoR160 was identified by computational screening of the rice Oryza sativa and is predicted to acts as a methylation guide for 25S ribosomal RNA in plants. snoR160 has also been alternatively named snoZ270 in rice.
References
External links
plant snoRNA database
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R20 | In molecular biology, Small nucleolar RNA R20 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA R20 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA R20 was identified in a screen of Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R21 | In molecular biology, Small nucleolar RNA R21 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA R21 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA R21 was identified in a screen of Arabidopsis thaliana
.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R24 | In molecular biology, Small nucleolar RNA R24 (also known as snoRNA R24) is a non-coding RNA (ncRNA) molecule identified in plants which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
R24 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
snoR24 was originally identified in Arabidopsis thaliana and is proposed to acts as a methylation guide for 18S ribosomal RNA (rRNA) in plants.
References
External links
plant snoRNA database
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R38 | In molecular biology, Small nucleolar RNA R38 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA R38 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
snoRNA R38 has been identified in human, yeast, Arabidopsis thaliana
and Oryza sativa
. snoRNA R38 guides the methylation of 2'-O-ribose sites in 28S rRNA.
References
External links
Yeast snoRNA page for Small nucleolar RNA R38
SGD page for Small nucleolar RNA R38
snoRNABase page for human snR38A
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R41 | In molecular biology, Small nucleolar RNA R41 (also known as snoR41) is a non-coding RNA (ncRNA) molecule identified in plants which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoR41 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
snoR41 was identified by computational screening the rice Oryza sativa genome and is predicted to act as a methylation guide for 18S and 25S ribosomal RNA (rRNA). snoR41 has been alternatively named snoZ154 and snoZ231 in rice. The 18S methylation site is reported to be homologous to that targeted by U62 in humans but there appears to be little sequence similarity between the two snoRNAs.
References
External links
plant snoRNA database
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R43 | In molecular biology, Small nucleolar RNA R43 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA R43 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA R43 was identified in a screen of Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R66 | In molecular biology, Small nucleolar RNA R66 (also known as snoR66) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoR66 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
snoR66 was identified by a computational screening of the rice Oryza sativa genome and is proposed to acts as a methylation guide for 18S ribosomal RNA in plants. Rice snoR66 has also been alternatively named snoZ269. Its should also not be confused with the snoRNA identified in yeast (Saccharomyces cerevisiae) and called snR66.
References
External links
plant snoRNA database
yeast snoRNA database
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R72 | In molecular biology, Small nucleolar RNA R72 (also known as snoR72) is a non-coding RNA (ncRNA) molecule identified in plants which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoR72 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
snoR72 was originally identified in Arabidopsis thaliana and is predicted to acts as a methylation guide for 25S ribosomal RNA rRNA.
References
External links
plant snoRNA database
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R79 | In molecular biology, Small nucleolar RNA R79 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA R79 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA R79 was identified in a screen of Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoM1 | In molecular biology, Small nucleolar RNA snoM1 is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
M1 is a predicted to belong to the H/ACA box class of snoRNAs which are thought to guide the sites of modification of uridines to pseudouridines. snoM1 seems to be found exclusively in Drosophila species.
References
Further reading
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoMBI-87 | In molecular biology, Small nucleolar RNA MBI-87 is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a "guide RNA".
snoRNA MBI-87 was originally cloned from mouse brain tissues
and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure and has the conserved H/ACA-box motifs.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoR1 | In molecular biology, the Small nucleolar RNA snoR1 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA snoR1 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA snoR1 was identified in a screen of Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoR28 | In molecular biology, Small nucleolar RNA R28 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA R28 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA R28 was identified in a screen of Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoR60 | In molecular biology, Small nucleolar RNA snoR60 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA snoR60 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA snoR60 was identified in a screen of Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoR86 | In molecular biology, Small nucleolar RNA snoR86 (also known as snoR86) is a non-coding RNA (ncRNA) which modifies other small nuclear RNAs (snRNAs). It is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines. Plant snoR86 was identified in a screen of Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoR9 | snoR9 is a non-coding RNA (ncRNA) which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
R9 is a member of the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
This snoRNA was identified in a computational search for GC-rich regions in the AT-rich genomes of hyperthermophiles. This snoRNA is not related to the plant snoRNA snoR9.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoR98 | In molecular biology, Small nucleolar RNA snoR98 (also known as snoR98) is a non-coding RNA (ncRNA) which modifies other small nuclear RNAs (snRNAs). It is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines. Plant snoR98 was identified in a screen of Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA1 | In molecular biology, SNORA1 (also known as ACA1) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Link to HUGO Gene Nomenclature Committee entry for SNORA1
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA12 | In molecular biology, U108 belongs to the H/ACA family of snoRNAs.
The sequence is predicted to guide the pseudouridylation of the U372 residue in the 28S rRNA subunit. However it has not been reported as a pseudouridylation site.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA13 | In molecular biology, SNORA13 (also known as ACA13) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA14 | In molecular biology, SNORA14 (also known as ACA14) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA15 | In molecular biology, SNORA15 (also known as ACA15) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
This family also includes the mouse MBI-79 sequence.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA17 | In molecular biology, SNORA17 (also known as ACA17) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines. Specifically, it is predicted to guide pseudouridylation of the 28S rRNA at positions U4659 and U4598. It shares the same host gene together with ACA43.
There are many closely related sequences that do not appear to have conserved H and ACA boxes, and may be pseudogenes.
References
Further reading
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA18 | In molecular biology, SNORA18 (also known as ACA18) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z157/R69/R10 | In molecular biology, Small nucleolar RNA Z157 (homologous to R69 and R10) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Z157 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA Z157 was identified in screens of Oryza sativa and Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA19 | In molecular biology, SNORA19 (also known as ACA19) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
The family also includes the mouse sequence MBI-51.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA2 | In molecular biology, SNORA2 (also known as ACA2) is a non-coding RNA (ncRNA) which modifies other small nuclear RNAs (snRNAs). It is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
ACA2 was originally cloned from HeLa cells by association with GAR1 protein. It has the predicted hairpin-hinge-hairpin-tail structure and has the conserved H/ACA-box motifs. Originally two sequence variants of ACA2 were identified (called ACA2a and ACA2b). Both variants share approximately 66% sequence identity to another snoRNA characterised in the same study called ACA34 (also known as SNORA34). In the human genome all three snoRNAs (ACA2a, ACA2b and ACA34) are found to be located in the introns of the same gene. This gene encodes a predicted protein referred to as FLJ20436.
Both variants of ACA2 have the same two predicted target sites (U4263 and U4282) in 28S ribosomal RNA (rRNA). ACA34 is also predicted to target one of these sites (U4282) in addition to U4269 of 28S rRNA. The sequence similarity, genomic location and the predicted target sites of these three snoRNAs suggest they have been generated by subsequent gene duplications during evolution.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA20 | In molecular biology, SNORA20 (also known as ACA20) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA21 | In molecular biology, SNORA21 (also known as ACA21) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
This family also contains the mouse sequence MBI-3.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA22 | In molecular biology, SNORA22 (also known as ACA22) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z159/U59 | In molecular biology, Small nucleolar RNA Z159/U59 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Z159/U59 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA Z159/U59 was identified in a screen of Oryza sativa.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA24 | In molecular biology, SNORA24 (also known as ACA24) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA25 | In molecular biology, SNORA25 (also known as ACA25) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA26 | In molecular biology, SNORA26 is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
The snoRNA HBI-6 belong to the H/ACA family of snoRNAs, guiding the pseudouridylation of position U4522 of the 28S rRNA. HBI-6 is the human orthologue of mouse MBI-6 snoRNA.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA27 | In molecular biology, SNORA27 (also known as ACA27) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z161/Z228 | In molecular biology, Small nucleolar RNA Z161 (homologous to snoRNA Z228) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Z161 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA Z161 was identified in a screen of Oryza sativa.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA28 | In molecular biology, SNORA28 (also known as ACA28) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
Further reading
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA29 | In molecular biology, SNORA29 (also known as ACA29) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
The family also contains the mouse sequence MBI-39.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA30 | In molecular biology, SNORA30 (also known as ACA30) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of eukaryotic cells. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA' as it 'guides' the modification process.
ACA30 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs based on its structure and the proteins it is associated with. snoRNA ACA30 is predicted to guide the pseudouridylation of U4643 of 28S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine(Ψ).
This snoRNA is related to other snoRNAs identified in human (ACA37) and mouse (MBI-26).
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA32 | In molecular biology, SNORA32 (also known as ACA32) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z163/Z177%20family | In molecular biology, Small nucleolar RNA Z163 (homologous to snoRNA Z177) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Z163 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA SNORD54 was identified in a screen of Oryza sativa.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA33 | In molecular biology, SNORA33 (also known as ACA33) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA35 | In molecular biology, for Homo sapiens snoRA35 (also known as HBI-36) is an H/ACA box snoRNA, first cloned from a mouse adult brain cDNA library by Cavaillé et al. (2000), and found to be specifically expressed in the choroid plexus. Its human orthologue, HBI-36 was discovered by a homology search, and was found to be specifically expressed in the brain. Its gene resides in the second intron of the serotonin receptor 2c (5HT-2c) gene, which is predominantly expressed in choroid plexus epithelial cells. The human 5HT-2c mRNA was predicted to be 2'O-methylated by the C/D box snoRNP HBII-52 at a position also subjected to A:I editing. HBI-36 has no documented RNA target.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA38 | In molecular biology, SNORA38 (also known as ACA38) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA4 | In molecular biology, SNORA4 (also known as ACA4) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z168/Z174 | In molecular biology, Small nucleolar RNA Z168/Z174 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Z168/Z174 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA Z168/Z174 was identified in a screen of Oryza sativa.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA40 | In molecular biology, the small nucleolar RNA ACA40 belongs to the H/ACA family of snoRNAs and guides the pseudouridylation of 28S rRNA subunit at position U4565. snoRNA ACA40 was discovered using large-scale cloning by Kiss et al. (2004) from a HeLa cell extract immunoprecipitated with an anti-GAR1 antibody. It is predicted to guide the pseudouridylation of residues 28S rRNA U4546 and 18S rRNA 1174. The pseudouridylation of these residues was reported by Ofengand and Bakin (1997) and Maden (1990). ACA1, ACA8, ACA18, ACA25, ACA32 and ACA40 and the C/D box snoRNAs mgh28S-2409 and mgh28S-2411 share the same host gene (MGC5306).
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA41 | In molecular biology, SNORA41 (also known as ACA41) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
The family also includes the mouse sequence MBI-83.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA42 | In molecular biology, SNORA42 (also known as ACA42) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA43 | In molecular biology, Small nucleolar RNA SNORA43 (also known as ACA43) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA43 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA43 is predicted to guide the pseudouridylation of U4938 of 28S ribosomal RNA (rRNA). Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA44 | In molecular biology, Small nucleolar RNA SNORA44 (also known as ACA44) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA44 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA44 is predicted to guide the pseudouridylation of U822 and U686 of 18S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
snoRNA ACA44 is homologous to the mouse snoRNA sequence MBI-64 described by Hüttenhofer et al in 2001.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA46 | In molecular biology, Small nucleolar RNA SNORA46 (also known as ACA46) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA46 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA46 is predicted to guide the pseudouridylation of U649 of 18S ribosomal RNA (rRNA). Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z195/SNORD33%20family | In molecular biology, Small nucleolar RNA Z195/SNORD33 (also known as U33) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Z195/SNORD33 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA Z195 was identified in a screen of Arabidopsis thaliana.
An experiment that looked at 22 different non-small-cell lung cancer tissues found that SNORD33, SNORD66 and SNORD76 were over-expressed relative to matched noncancerous lung tissues.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA48 | In molecular biology, Small nucleolar RNA SNORA48 is a pseudouridylation guide H/ACA box snoRNA. This snoRNA was cloned in 2004 from a HeLa cell extract immunoprecipitated with an anti-GAR1 antibody. It is predicted to guide the pseudouridylation of residue U3797 of 28S rRNA.
The pseudouridylation of this residue had been reported in 1997. The H/ACA box snoRNAs ACA48 and U67, and the C/D box snoRNA mgU6-77, share the same host gene (EIF4A1).
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA49 | In molecular biology, Small nucleolar RNA ACA49 is a snoRNA, originally cloned in 2004 from a HeLa cell extract immunoprecipitated with an anti-GAR1 antibody. It has no identified target RNA.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA5 | In molecular biology, SNORA5 (also known as ACA5) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z196/R39/R59%20family | In molecular biology, Small nucleolar RNA Z196/R39/R59 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a guide RNA.
snoRNA Z196/R39/R59 belongs to the C/D box class of snoRNAs which contain the conserved sequence motifs known as the C box (UGAUGA) and the D box (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
Plant snoRNA Z196 was identified in a screen of Arabidopsis thaliana.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA50 | In molecular biology, Small nucleolar RNA SNORA50 (also known as ACA50) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA50 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA50 is predicted to guide the pseudouridylation of U34 and U105 of 18S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA51 | In molecular biology, Small nucleolar RNA SNORA51 (also known as ACA51) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA51 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA52 | In molecular biology, Small nucleolar RNA SNORA52 (also known as ACA52) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA52 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA52 is predicted to guide the pseudouridylation of U3823 of 28S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA53 | In molecular biology, the snoRNA ACA53 belongs to the H/ACA family of pseudouridylation guide snoRNAs. This H/ACA box RNA was cloned by Kiss et al. (2004) from a HeLa cell extract immunoprecipitated with an anti-GAR1 antibody. It has no identified target RNA. RNA residues targeted for pseudouridylation by this molecule have not been identified.
References
External links
snoRNAbase entry snoRA53
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA54 | In molecular biology, Small nucleolar RNA SNORA54 (also known as ACA54) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA54 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA54 is predicted to guide the pseudouridylation of U3801 of 28S ribosomal RNA (rRNA). Pseudouridylation is the isomerisation (of the nucleoside uridine) to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA55 | In molecular biology, Small nucleolar RNA SNORA55 (also known as ACA55) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA55 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA55 is predicted to guide the pseudouridylation of U36 of 18S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA56 | In molecular biology, Small nucleolar RNA SNORA56 (also known as ACA56) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA56 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA56 is predicted to guide the pseudouridylation of U1664 of 28S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/HgcG%20RNA | The HgcG RNA gene is a non-coding RNA that was identified computationally and experimentally verified in AT-rich hyperthermophiles. The genes from this screen were named hgcA through hgcG ("high GC"). HgcG is of unknown function. hgcG is significantly similar to a region of the Archaeoglobus fulgidus genome. The genes were named hgcA through hgcG ("high GC"). It was later identified as Pab40 H/ACA snoRNA with rRNA targets.
See also
HgcC family RNA
HgcE RNA
HgcF RNA
References
External links
Non-coding RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA57 | In molecular biology, Small nucleolar RNA SNORA57 (also known as U99 and MBI-64) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a "guide RNA".
ACA57 was originally cloned from a mouse brain library and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA57 is predicted to guide the pseudouridylation of U1004 of 18S ribosomal RNA (rRNA). Pseudouridylation is the isomerisation of the nucleoside uridine to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA58 | In molecular biology, Small nucleolar RNA SNORA58 (also known as ACA58) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a "guide RNA".
ACA58 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA58 is predicted to guide the pseudouridylation of U3823 of 28S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
snoRNA ACA58 is homologous to the mouse snoRNA sequence MBI-12 described in.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA61 | In molecular biology, Small nucleolar RNA SNORA61 (also known as ACA61) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
ACA61 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA61 is predicted to guide the pseudouridylation of U2495 of 28S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA62 | In molecular biology, Small nucleolar RNA SNORA62 (E2) belongs to the H/ACA class of snoRNAs.
E2 is involved in the processing of eukaryotic pre-rRNA and has regions of complementarity to 28S rRNA.
E2 is encoded in introns in the gene for a laminin-binding protein.
This family also contains the related ACA6, M2 and MBI-136 snoRNAs.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA63 | In molecular biology, Small nucleolar RNA SNORA63 (E3) belongs to the H/ACA class of snoRNAs, is involved in the processing of eukaryotic pre-rRNA and has regions of complementarity to 18S rRNA. E3 is encoded in introns in the gene for protein synthesis initiation factor 4AII.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA65 | In molecular biology, SNORA65 (also known as U65) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a 'guide RNA'.
U65 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure and has the conserved H/ACA-box motifs.
snoRNA U65 is predicted to guide the pseudouridylation of residues U4373 and U4427 of 28S ribosomal RNA (rRNA).
Pseudouridylation is the isomerisation of the nucleoside uridine to pseudouridine(Ψ). U65 is related to the snoRNA MBII-351 identified in mouse.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA66 | In molecular biology, SNORA66 (also known as U66) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a "guide RNA".
U66 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. U66 is predicted to guide the pseudouridylation of U119 of 18S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA67 | In molecular biology, snoRNA U67 is a non-coding RNA molecule that belongs to the H/ACA class of snoRNAs which are thought to guide the sites of modification of uridines to pseudouridines. This snoRNA guides pseudouridylation of position U1445 in 18S rRNA. This RNA is expressed from the intron of the host gene EIF4A1.
References
External links
U67 entry in snoRNABase
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA68 | In molecular biology, Small nucleolar RNA SNORA68 (also known as U68) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a "guide RNA".
ACA68 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA68 is predicted to guide the pseudouridylation of U4393 of 28S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/HIF-1%20alpha%20IRES | The HIF-1α internal ribosome entry site (IRES) is an RNA element present in the 5' UTR of the mRNA of HIF-1α that allows cap-independent translation. The HIF-1α internal ribosome entry site (IRES) allows translation to be maintained under hypoxic cell conditions that inhibit cap-dependent translation [1]. The hypoxia-inducible factor-1α protein (HIF-1α) is a subunit of the HIF-1 transcription factor, which induces transcription of several genes involved in the cellular response to hypoxia.
References
Further reading
External links
Cis-regulatory RNA elements |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA69 | In molecular biology, Small nucleolar RNA SNORA69 (also known as U69) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA) and also often referred to as a "guide RNA".
ACA69 was originally cloned from HeLa cells and belongs to the H/ACA box class of snoRNAs as it has the predicted hairpin-hinge-hairpin-tail structure, has the conserved H/ACA-box motifs and is found associated with GAR1 protein. snoRNA ACA69 is predicted to guide the pseudouridylation of U36 of 18S and U69 of 5.8S ribosomal RNA (rRNA). Pseudouridylation is the (isomerisation of the nucleoside uridine) to the different isomeric form pseudouridine.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Histidine%20operon%20leader | The Histidine operon leader is an RNA element found in the bacterial histidine operon. At least 6 amino acid operons are known to be regulated by attenuation. In each a leader sequence of 150–200 bp is found upstream of the first gene in the operon. This leader sequence can assume two different secondary structures known as the terminator and the anti-terminator structure. In each case the leader also codes for very short peptide sequence that is rich in the end product amino acid of the operon. The terminator structure is recognised as a termination signal for RNA polymerase and the operon is not transcribed. This structure forms when the cell has an excess of the regulatory amino acid and ribosome movement over the leader transcript is not impeded. When there is a deficiency of the charged tRNA of the regulatory amino acid the ribosome translating the leader peptide stalls and the antiterminator structure can form. This allows RNA polymerase to transcribe the operon.
References
Further reading
External links
Cis-regulatory RNA elements |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20SNORA7 | In molecular biology, SNORA7 (also known as ACA7) is a member of the H/ACA class of small nucleolar RNA that guide the sites of modification of uridines to pseudouridines.
The family also contains the mouse sequence MBI-141.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Histone%203%E2%80%B2%20UTR%20stem-loop | The histone 3′ UTR stem-loop is an RNA element involved in nucleocytoplasmic transport of the histone mRNAs, and in the regulation of stability and of translation efficiency in the cytoplasm. The mRNAs of metazoan histone genes lack polyadenylation and a poly-A tail, instead 3′ end processing occurs at a site between this highly conserved stem-loop and a purine rich region around 20 nucleotides downstream (the histone downstream element, or HDE). The stem-loop is bound by a 31 kDa stem-loop binding protein (SLBP - also termed the histone hairpin binding protein, or HBP). Together with U7 snRNA binding of the HDE, SLBP binding nucleates the formation of the processing complex.
References
External links
Transterm page for Histone 3′ stem loop
UTRSite page for Histone 3′UTR stem-loop structure (HSL3)
Cis-regulatory RNA elements |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.