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https://en.wikipedia.org/wiki/Mir-BHRF1-1%20microRNA%20precursor%20family | The mir-BHRF1-1 microRNA precursor found in Human herpesvirus 4 (Epstein–Barr virus) and Cercopithicine herpesvirus 15. In Epstein–Barr virus, mir-BHRF1-1 is found in the 5' UTR of the BHRF1 (Bam HI fragment H rightward open reading frame 1) gene, which is known to encode a distant Bcl-2 homolog. The mature sequence is... |
https://en.wikipedia.org/wiki/Mir-BHRF1-2%20microRNA%20precursor%20family | The mir-BHRF1-2 microRNA precursor found in human herpesvirus 4 (Epstein–Barr virus), cercopithicine herpesvirus 15 and herpesvirus papio. In Epstein-Barr virus, mir-BHRF1-2 is found in the 3' UTR of the BHRF1 (Bam HI fragment H rightward open reading frame 1) gene, which is known to encode a distant Bcl-2 homolog. The... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R32/R81/Z41 | In molecular biology, Small nucleolar RNA Z41 (homologous to R32 and R81) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is ... |
https://en.wikipedia.org/wiki/Mir-BHRF1-3%20microRNA%20precursor%20family | The mir-BHRF1-3 microRNA precursor found in Human herpesvirus 4 (Epstein–Barr virus). In Epstein-Barr virus, mir-BHRF1-3 is found in the 3' UTR of the BHRF1 (Bam HI fragment H rightward open reading frame 1) gene, which is known to encode a distant Bcl-2 homolog. The mature sequence is excised from the 5' arm of the ha... |
https://en.wikipedia.org/wiki/Mnt%20IRES | The Mnt internal ribosome entry site (IRES) is an RNA element. Mnt is a transcriptional repressor related to the Myc/Mad family of transcription factors. It is thought that this IRES allows efficient Mnt synthesis when cap-dependent translation initiation is reduced.
See also
N-myc IRES
Tobamovirus IRES
TrkB IRES
Re... |
https://en.wikipedia.org/wiki/Nanos%203%E2%80%B2%20UTR%20translation%20control%20element | Nanos 3′ UTR translation control element is a cis-regulatory element in the 3′ untranslated region (3′ UTR) of the messenger RNA which encodes the Nanos protein. The Nanos protein in Drosophila is required for correct morphogenesis (anterior/posterior patterning) in the Drosophila embryo. Translation of the Nanos mRNA ... |
https://en.wikipedia.org/wiki/N-myc%20internal%20ribosome%20entry%20site%20%28IRES%29 | The N-myc internal ribosome entry site (IRES) is an RNA element found in the n-myc gene. The myc family of genes when expressed are known to be involved in the control of cell growth, differentiation and apoptosis. n-myc mRNA has an alternative method of translation via an internal ribosome entry site where ribosomes a... |
https://en.wikipedia.org/wiki/Nuclear%20RNase%20P | In molecular biology, nuclear ribonuclease P (RNase P) is a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterised enzyme activity is the generation of mature 5′-ends of tRNAs by cleaving the 5′-leader elements of precursor-tRNAs. Cellular RN... |
https://en.wikipedia.org/wiki/OxyS%20RNA | OxyS RNA is a small non-coding RNA which is induced in response to oxidative stress in Escherichia coli. This RNA acts as a global regulator to activate or repress the expression of as many as 40 genes, by an antisense mechanism, including the fhlA-encoded transcriptional activator and the rpoS-encoded sigma(s) subunit... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R44/J54/Z268%20family | In molecular biology, Small nucleolar RNA R44/J54/Z268 refers to a group of related non-coding RNA (ncRNA) molecules which function in the biogenesis of other small nuclear RNAs (snRNAs). These small nucleolar RNAs (snoRNAs) are modifying RNAs and are usually located in the nucleolus of the eukaryotic cell which is a m... |
https://en.wikipedia.org/wiki/P27%20cis-regulatory%20element | The p27 cis-regulatory element is a structured G/C rich RNA element which is involved in controlling cell cycle regulated translation of the p27kip protein in human cells.
The p27kip1 protein is involved in cell cycle regulation and belongs to the Cip/Kip family of cyclin dependent kinase(CDK)inhibitors. These inhibi... |
https://en.wikipedia.org/wiki/Pestivirus%20internal%20ribosome%20entry%20site%20%28IRES%29 | This family represents the internal ribosome entry site (IRES) of the pestiviruses. The pestivirus IRES allows cap and end-independent translation of mRNA in the host cell. The IRES achieves this by mediating the internal initiation of translation by recruiting a ribosomal 43S pre-initiation complex directly to the ini... |
https://en.wikipedia.org/wiki/Picornavirus%20internal%20ribosome%20entry%20site%20%28IRES%29 | This family represents the Picornavirus internal ribosome entry site (IRES) element present in their 5' untranslated region. These elements were discovered in picornaviruses. They are cis-acting RNA sequences that adopt diverse three-dimensional structures, recruit the translation machinery and that often operate in as... |
https://en.wikipedia.org/wiki/Plant%20small%20nucleolar%20RNA%20R71 | In molecular biology, small nucleolar RNA R71 (also known as snoRNA R71) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is ... |
https://en.wikipedia.org/wiki/Plasmid%20RNAIII | Plasmid RNAIII is a non-coding RNA found in bacterial plasmids including pIP501. RNAIII acts by transcriptional attenuation of the essential repR-mRNA. RNAIII is composed of four stem-loops with loops L3 and L4 that interact with the RNA target.
References
External links
Non-coding RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20R64/Z200%20family | In molecular biology, R64/Z200 is a member of the C/D class of small nucleolar RNA which guide the site-specific 2'-O-methylation of substrate RNA. This family can be found in Arabidopsis thaliana (R64) and Oryza sativa (Z200).
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Pospiviroid%20RY%20motif%20stem%20loop | The Pospiviroid RY motif stem loop is an RNA element found in Pospiviroids such as potato spindle tuber viroid (PSTVd). The RY nucleotide sequence motif (5'-ACAGG and CUCUUCC-5') in PSTVd, is thought to bind with the tomato protein Virp1. The exact function of this motif and the significance of Virp1 binding is unkno... |
https://en.wikipedia.org/wiki/Potassium%20channel%20RNA%20editing%20signal | The potassium channel RNA editing signal is an RNA element found in human Kv1.1 and its homologues which directs the efficient modification of an adenosine to inosine by an adenosine deaminase acting on RNA (ADAR). The ADAR modification causes an isoleucine/valine recoding event which lies in the ion-conducting pore o... |
https://en.wikipedia.org/wiki/Potato%20virus%20X%20cis-acting%20regulatory%20element | The Potato virus X cis-acting regulatory element is a cis-acting regulatory element found in the 3' UTR of the Potato virus X genome. This element has been found to be required for minus strand RNA accumulation and is essential for efficient viral replication.
See also
Poxvirus AX element late mRNA cis-regulatory ele... |
https://en.wikipedia.org/wiki/Poxvirus%20AX%20element%20late%20mRNA%20cis-regulatory%20element | The Poxvirus AX element late mRNA family represents a cis-regulatory element present at the 3' end of poxvirus late ATI mRNA and is known as the AX element. The AX element is involved in directing the efficient production and orientation-dependent formation of late RNAs. It is likely that this element directs the endon... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoR31/Z110/Z27 | In molecular biology, Small nucleolar RNA Z110 (homologous to Z27 and R31) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is... |
https://en.wikipedia.org/wiki/PrfA%20thermoregulator%20UTR | The PrfA thermoregulator UTR is an RNA thermometer found in the 5' UTR of the prfA gene. In Listeria monocytogenes, virulence genes are maximally expressed at 37 °C (human body temperature) but are almost silent at 30 °C. The genes are controlled by PrfA, a transcriptional activator whose expression is thermoregulated.... |
https://en.wikipedia.org/wiki/Prion%20pseudoknot | The prion pseudoknot is predicted RNA pseudoknot structure found in prion protein mRNA. It has been suggested that this element has a possible effect in prion protein translation. The human prion protein gene contains 5 copies of a 24 nucleotide repeat that contains this structure. The number of nucleotide repeats fou... |
https://en.wikipedia.org/wiki/PrrF%20RNA | The PrrF RNAs are small non-coding RNAs involved in iron homeostasis and are encoded by all Pseudomonas species. The PrrF RNAs are analogs of the RyhB RNA, which is encoded by enteric bacteria. Expression of the PrrF RNAs is repressed by the ferric uptake regulator (Fur) when cells are grown in iron-replete conditions.... |
https://en.wikipedia.org/wiki/Purine%20riboswitch | A purine riboswitch is a sequence of ribonucleotides in certain messenger RNA (mRNA) that selectively binds to purine ligands via a natural aptamer domain. This binding causes a conformational change in the mRNA that can affect translation by revealing an expression platform for a downstream gene, or by forming a tran... |
https://en.wikipedia.org/wiki/PyrR%20binding%20site | The PyrR binding site is an RNA element that is found upstream of a variety of genes involved in pyrimidine biosynthesis and transport.
The RNA structure permits binding of PyrR protein which regulates pyrimidine biosynthesis in Bacillus subtilis. When the protein binds, a downstream terminator hairpin forms, repressi... |
https://en.wikipedia.org/wiki/Anti-Q%20RNA | Anti-Q RNA (formerly Qa RNA) is a small ncRNA from the conjugal plasmid pCF10 of Enterococcus faecalis. It is coded in cis to its regulatory target, prgQ, but can also act in trans. Anti-Q is known to interact with nascent prgQ transcripts to allow formation of an intrinsic terminator, or attenuator, thus preventing tr... |
https://en.wikipedia.org/wiki/Qrr%20RNA |
Introduction
Qrr (Quorum regulatory RNA) is a small non-coding RNA that is thought to be involved in the regulation of quorum sensing in Vibrio species. The use of small RNAs for vital functions like metabolism, infection cycling, and stress response is ubiquitous among bacteria. Qrr operates as part of a negative f... |
https://en.wikipedia.org/wiki/Sib%20RNA | Sib RNA refers to a group of related non-coding RNA. They were originally named QUAD RNA after they were discovered as four repeat elements in Escherichia coli intergenic regions. The family was later renamed Sib (for short intergenic abundant sequences) when it was discovered that the number of repeats is variable in ... |
https://en.wikipedia.org/wiki/R1162-like%20plasmid%20antisense%20RNA | R1162-like plasmid antisense RNA is a 75-base RNA molecule which negatively regulates the RepI region of the plasmid. The protein product of this gene region, along with another protein, controls the copy number of the 8.75kB R1162 plasmid.
Experimental evidence has shown that in Escherichia coli, when levels of this ... |
https://en.wikipedia.org/wiki/R2%20RNA%20element | The R2 RNA element is a non-long terminal repeat (non-LTR) retrotransposable element that inserts at a specific site in the 28S ribosomal RNA (rRNA) genes of most insect genomes. In order to insert itself into the genome, retrotransposon encoded protein (R2) protein makes a specific nick in one of the DNA strands at th... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoR639/H1 | In molecular biology, Small nucleolar RNA snoR639 (also known as snoH1) is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It ... |
https://en.wikipedia.org/wiki/RbcL%205%E2%80%B2%20UTR%20RNA%20stabilising%20element | The rbcL 5′ UTR RNA stabilising element is an RNA element from Chlamydomonas reinhardtii that is thought to be involved in the stabilisation of the rbcL gene which codes for large subunit of ribulose-1,5-bisphosphate carboxylase. Mutations in this family can lead to a 50-fold acceleration in degradation of the mRNA tra... |
https://en.wikipedia.org/wiki/Renin%20stability%20regulatory%20element%20%28REN-SRE%29 | The Renin stability regulatory element (REN-SRE) is a cis-acting element identified in the 3'untranslated region (3'UTR) of the renin (REN) gene. It acts to regulate the levels of renin protein produced in the cell. Renin is secreted by renal juxtaglomerular cells and catalyses the conversion of angiotensinogen into an... |
https://en.wikipedia.org/wiki/Repression%20of%20heat%20shock%20gene%20expression%20%28ROSE%29%20element | The repression of heat shock gene expression (ROSE) element is an RNA element found in the 5' UTR of some heat shock protein's mRNAs. The ROSE element is an RNA thermometer that negatively regulates heat shock gene expression. The secondary structure is thought to be altered by temperature, thus it is an RNA thermomete... |
https://en.wikipedia.org/wiki/Retron | A retron is a distinct DNA sequence found in the genome of many bacteria species that codes for reverse transcriptase and a unique single-stranded DNA/RNA hybrid called multicopy single-stranded DNA (msDNA). Retron msr RNA is the non-coding RNA produced by retron elements and is the immediate precursor to the synthesis... |
https://en.wikipedia.org/wiki/Retroviral%20psi%20packaging%20element | The retroviral psi packaging element, also known as the Ψ RNA packaging signal, is a cis-acting RNA element identified in the genomes of the retroviruses Human immunodeficiency virus (HIV) and Simian immunodeficiency virus (SIV). It is involved in regulating the essential process of packaging the retroviral RNA genome ... |
https://en.wikipedia.org/wiki/Retrovirus%20direct%20repeat%201%20%28dr1%29 | The direct repeat 1 (dr1) element is an RNA element commonly found in the 3' UTR of Avian sarcoma, Rous sarcoma and Avian leukosis viruses (Alpharetroviruses and Avian type C retroviruses). dr1 is required for efficient viral replication and is thought to be involved in genomic RNA packaging although this may not be it... |
https://en.wikipedia.org/wiki/Ribosomal%20protein%20L10%20leader | This family is a putative ribosomal protein leader autoregulatory structure found in B. subtilis and other low-GC Gram-positive bacteria. It is located in the 5′ untranslated regions of mRNAs encoding ribosomal proteins L10 and L12 (rplJ-rplL). A Rho-independent transcription terminator structure that is probably invol... |
https://en.wikipedia.org/wiki/Ribosomal%20protein%20L13%20leader | L13 ribosomal protein leaders play a role in ribosome biogenesis as part of an autoregulatory mechanism to control the concentration of ribosomal proteins L13. Three structural classes of L13 ribosomal protein leaders were detected by different bioinformatics approaches: in B. subtilis and other low-GC Gram-positive ba... |
https://en.wikipedia.org/wiki/Ribosomal%20protein%20L19%20leader | L19 Ribosomal protein leaders are part of the ribosome biogenesis. They are used as an autoregulatory mechanism to control the concentration of ribosomal proteins L19, and are located in the 5′ untranslated regions of mRNAs encoding ribosomal protein L19 (rplS).
L19 ribosomal protein leaders have been bioinformatically... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snoZ7/snoR77 | In molecular biology, the snoRNA snoZ7/snoZ77 family contains related non-coding RNA molecules that are members of the C/D class of snoRNA which contain the C box motif (UGAUGA) and the D box motif (CUGA). Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs. ... |
https://en.wikipedia.org/wiki/Ribosomal%20protein%20L20%20leader | L20 ribosomal protein leader is a ribosomal protein leader involved in the ribosome biogenesis. It is used as an autoregulatory mechanism to control the concentration of ribosomal proteins L20. The structure is typically located in the 5′ untranslated regions of mRNAs encoding initiation factor 3 followed by ribosomal ... |
https://en.wikipedia.org/wiki/Ribosomal%20protein%20L21%20leader | A ribosomal protein L21 leader is a ribosomal protein leader autoregulatory structure that regulates mRNAs containing a gene that encodes ribosomal protein L21.
An RNA motif was predicted to function as an L21 leader in a bioinformatics study, and is
found in B. subtilis and other low-GC Gram-positive bacteria within t... |
https://en.wikipedia.org/wiki/Ribosomal%20S15%20leader | S15 Ribosomal protein leaders perform an important regulatory function in ribosome biogenesis. They were used as an autoregulatory mechanism to control the concentration of ribosomal proteins S15. The structure is located in the 5′ untranslated regions of mRNAs encoding ribosomal proteins S15 (rpsO). Multiple distinct ... |
https://en.wikipedia.org/wiki/RNAI | RNAI is a non-coding RNA that is an antisense repressor of the replication of some E. coli plasmids, including ColE1. Plasmid replication is usually initiated by RNAII, which acts as a primer by binding to its template DNA. The complementary RNAI binds RNAII prohibiting it from its initiation role. The rate of degrad... |
https://en.wikipedia.org/wiki/RNAIII | RNAIII is a stable 514 nt regulatory RNA transcribed by the P3 promoter of the Staphylococcus aureus quorum-sensing agr system ). It is the major effector of the agr regulon, which controls the expression of many S. aureus genes encoding exoproteins and cell wall associated proteins plus others encoding regulatory prot... |
https://en.wikipedia.org/wiki/RNA-OUT | RNA-OUT is a non-coding RNA that is antisense to the RNA-IN non-coding RNA. Transposition of insertion sequence IS10 is regulated by an anti-sense RNA which inhibits transposase expression when IS10 is present in multiple copies per cell. IS10 antisense pairing is facilitated by the RNA-binding protein, Hfq. RNA-OUT c... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snR55/Z10 | In molecular biology, Small nucleolar RNA snR55/Z10 is a non-coding RNA (ncRNA) molecule which functions in the biogenesis of other small nuclear RNAs (snRNAs). These small nucleolar RNAs (snoRNAs) are modifying RNAs and usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis.
... |
https://en.wikipedia.org/wiki/RNase%20E%205%E2%80%B2%20UTR%20element | In molecular biology, the RNase E 5′ UTR element is a cis-acting element located in the 5′ UTR of ribonuclease (RNase) E messenger RNA (mRNA).
RNase E is a key regulatory enzyme in the pathway of mRNA degradation in Escherichia coli. It is able to auto-regulate the degradation of its own mRNA in response to changes in... |
https://en.wikipedia.org/wiki/RncO | RncO is a bacterial non-coding RNA regulatory element found in the rnc leader sequence. The rnc operon is negatively auto-regulated by transcript stability. rnc, the first gene in the operon codes for RNase III which cleaves the long rncO stem II leading to transcript degradation and a reduction in translation. Matsuna... |
https://en.wikipedia.org/wiki/Rotavirus%20cis-acting%20replication%20element | This family represents a rotavirus cis-acting replication element (CRE) found at the 3'-end of rotavirus mRNAs. The family is thought to promote the synthesis of minus strand RNA to form viral dsRNA.
References
External links
Cis-regulatory RNA elements |
https://en.wikipedia.org/wiki/RprA%20RNA | The RprA RNA gene encodes a 106 nucleotide regulatory non-coding RNA. Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site.
Clones carrying... |
https://en.wikipedia.org/wiki/RsmY%20RNA%20family | The rsmY RNA family is a set of related non-coding RNA genes, that like RsmZ, is regulated by the GacS/GacA signal transduction system in the plant-beneficial soil bacterium and biocontrol model organism Pseudomonas fluorescens CHA0. GacA/GacS target genes are translationally repressed by the small RNA binding protein... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snR60/Z15/Z230/Z193/J17 | In molecular biology, snoRNA snR60 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleolar RNA (snoRNA)... |
https://en.wikipedia.org/wiki/RtT%20RNA | The RtT RNA (repeat structure of the tyrT operon) is a RNA element that is released from the tyrT operon of Escherichia coli. The exact function of RtT is unknown although it is thought that it may be involved in changing the cellular response in relation to amino acid starvation.
The functional prediction is strength... |
https://en.wikipedia.org/wiki/Rubella%20virus%203%E2%80%B2%20cis-acting%20element | The Rubella virus 3′ cis-acting element RNA family represents a cis-acting element found at the 3′ UTR in the rubella virus. This family contains three conserved step loop structures. Calreticulin (CAL), which is known to bind calcium in most eukaryotic cells, is able to specifically bind to the first stem loop of this... |
https://en.wikipedia.org/wiki/RybB%20RNA | RybB is a small non-coding RNA was identified in a large scale screen of Escherichia coli. The function of this short RNA has been studied using a transcriptomic approach and kinetic analyses of target mRNA decay in vivo. RybB was identified as a factor that selectively accelerates the decay of multiple major omp mRNAs... |
https://en.wikipedia.org/wiki/RydB%20RNA | The RydB RNA is a non-coding RNA originally identified in E. coli in an RNA screen. This gene is only 67 nucleotides in length and is composed of a hairpin like structure. RydB lies between the ydiC and ydiH in E. coli. Homologous RNA genes have been found in other species such as Shigella flexneri and Salmonella s... |
https://en.wikipedia.org/wiki/RydC%20RNA | RydC is a bacterial non-coding RNA. RydC is thought to regulate a mRNA, yejABEF, which encodes an ABC transporter protein. RydC is known to bind the Hfq protein, which causes a conformational change in the RNA molecule. The Hfq/RydC complex is then thought to bind to the target mRNA and induce its degradation.
See als... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20snR61/Z1/Z11 | In molecular biology, Small nucleolar RNA snR61/Z1/Z11 refers to a group of related non-coding RNA (ncRNA) molecules which function in the biogenesis of other small nuclear RNAs (snRNAs). These small nucleolar RNAs (snoRNAs) are modifying RNAs and usually located in the nucleolus of the eukaryotic cell which is a major... |
https://en.wikipedia.org/wiki/RyeB%20RNA | The SdsR/RyeB RNA is a non-coding RNA that was identified in a large scale screen of E. coli. The exact 5′ and 3′ ends of this RNA are uncertain. This RNA overlaps the SraC/RyeA RNA on the opposite strand suggesting that the two may act in a concerted manner. It is transcribed by general stress factor σs and is most hi... |
https://en.wikipedia.org/wiki/RyeE%20RNA | The CyaR RNA (formerly known as RyeE RNA) non-coding RNA was identified in a large scale screen of Escherichia coli and was called candidate 14. The exact 5′ and 3′ ends of this RNA are uncertain. This gene lies between yegQ and orgK in E. coli. This small RNA was shown to be bound by the Hfq protein. This RNA has been... |
https://en.wikipedia.org/wiki/RyfA%20RNA | The ryfA RNA gene is a non-coding RNA present in E. coli, Shigella flexneri and Salmonella species where it is found between the ydaN and dbpA genes. These RNA genes are about 300 nucleotides in length. The function of this RNA is unknown.
References
External links
Non-coding RNA |
https://en.wikipedia.org/wiki/RyhB | RyhB RNA is a 90 nucleotide RNA that down-regulates a set of iron-storage and iron-using proteins when iron is limiting; it is itself negatively regulated by the ferric uptake repressor protein, Fur (Ferric uptake regulator).
Discovery
The gene was independently identified in two screens, named RyhB by Wassarman et al... |
https://en.wikipedia.org/wiki/SAM-II%20riboswitch | The SAM-II riboswitch is an RNA element found predominantly in Alphaproteobacteria that binds S-adenosyl methionine (SAM). Its structure and sequence appear to be unrelated to the SAM riboswitch found in Gram-positive bacteria. This SAM riboswitch is located upstream of the metA and metC genes in Agrobacterium tumefac... |
https://en.wikipedia.org/wiki/SAM%20riboswitch%20%28S-box%20leader%29 | The SAM riboswitch (also known as the S-box leader and the SAM-I riboswitch) is found upstream of a number of genes which code for proteins involved in methionine or cysteine biosynthesis in Gram-positive bacteria. Two SAM riboswitches in Bacillus subtilis that were experimentally studied act at the level of transcript... |
https://en.wikipedia.org/wiki/Sar%20RNA | Sar RNA is an antisense non-coding RNA that is partly responsible for the negative regulation of antirepressor synthesis during development of bacteriophage P22. The target of Sar RNA is ant mRNA. Structurally, Sar RNA forms two stem-loops.
References
External links
Antisense RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20U6-53/MBII-28 | In molecular biology, Small nucleolar RNA U6-53 (also known as MBII-28) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is kn... |
https://en.wikipedia.org/wiki/S-element | The S-element is an RNA element found in p42d and related plasmids. The S-element has multiple functions and is believed to act as a negative regulator of repC transcription, and be required for efficient replication and act as a translational enhancer of repC.
See also
ctRNA
References
External links
Cis-regul... |
https://en.wikipedia.org/wiki/SerC%20leader | SerC leader is a putative regulatory RNA structure found upstream of the serC-serA operon in some alpha-proteobacteria. The final stem of the structure overlaps the ribosome binding site of the serC reading frame.
References
External links
Cis-regulatory RNA elements |
https://en.wikipedia.org/wiki/SgrS%20RNA | SgrS (sugar transport-related sRNA, previously named ryaA) is a 227 nucleotide small RNA that is activated by SgrR in Escherichia coli during glucose-phosphate stress. The nature of glucose-phosphate stress is not fully understood, but is correlated with intracellular accumulation of glucose-6-phosphate. SgrS helps c... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z102/R77 | In molecular biology, Small nucleolar RNA RZ102/R77 refers to a group of related non-coding RNA (ncRNA) molecules which function in the biogenesis of other small nuclear RNAs (snRNAs). These small nucleolar RNAs (snoRNAs) are modifying RNAs and usually located in the nucleolus of the eukaryotic cell which is a major si... |
https://en.wikipedia.org/wiki/SL1%20RNA | This family represents the SL1 RNA. The gene encoding SL1 RNA is commonly, but not always, located in the spacer region between 5S-rRNA genes. The SL1 RNA is involved in trans-splicing, which is a form of RNA processing. The acquisition of a spliced leader from an SL RNA is an inter-molecular reaction that precisely jo... |
https://en.wikipedia.org/wiki/SL2%20RNA | SL2 RNA is a non-coding RNA involved in trans splicing in lower eukaryotes. Trans-splicing is a form of RNA processing. The acquisition of a spliced leader from an SL RNA is an inter-molecular reaction which precisely joins exons derived from separately transcribed RNAs. Approximately 25% of C. elegans genes are organi... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2011 | In molecular biology, Small Cajal body specific RNA 11 (also known as scaRNA11 or ACA57) is a small nucleolar RNA found in Cajal bodies.
scaRNAs are a specific class of small nuclear RNAs which localise to the Cajal bodies and guide the modification of RNA polymerase II transcribed spliceosomal RNAs U1, U2, U4, U5 and... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z107/R87 | In molecular biology, Small nucleolar RNA RZ107/R87 refers to a group of related non-coding RNA (ncRNA) molecules which function in the biogenesis of other small nuclear RNAs (snRNAs). These small nucleolar RNAs (snoRNAs) are modifying RNAs and usually located in the nucleolus of the eukaryotic cell which is a major si... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2013 | In molecular biology, Small Cajal body specific RNA 13 (also known as scaRNA13 or U93) is a small nucleolar RNA found in Cajal bodies and believed to be involved in the pseudouridylation of U2 and U5 spliceosomal RNA.
scaRNAs are a specific class of small nucleolar RNAs that localise to the Cajal bodies and guide the ... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2014 | In molecular biology, Small Cajal body specific RNA 14 (also known as scaRNA14 or U100) is a small nucleolar RNA found in Cajal bodies.
scaRNAs are a specific class of small nucleolar RNAs which localise to the Cajal bodies and guide the modification of RNA polymerase II transcribed spliceosomal RNAs U1, U2, U4, U5 an... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2015 | Small Cajal body specific RNA 15 (also known as SCARNA15 or ACA45) is a small nucleolar RNA found in Cajal bodies and believed to be involved in the pseudouridylation (isomerisation of uridine to pseudouridine) of U1 spliceosomal RNA.
scaRNAs are a specific class of small nucleolar RNAs that localise to the Cajal bod... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2016 | Small Cajal body specific RNA 16 (also known as SCARNA16 or ACA47) is a small nucleolar RNA found in Cajal bodies and believed to be involved in the pseudouridylation (isomerisation of uridine to pseudouridine) of U1 spliceosomal RNA.
scaRNAs are a specific class of small nucleolar RNAs that localise to the Cajal bod... |
https://en.wikipedia.org/wiki/Tolcsva | Tolcsva is a village in Borsod-Abaúj-Zemplén county, Hungary. It is the birthplace of film pioneer William Fox.
Notable residents
Barna Buza, Hungarian politician and jurist, Minister of Agriculture (1918-1919) and Minister of Justice (1918)
Béla Mezőssy, Hungarian politician, Secretary of Agriculture (1906-1910) an... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2017 | Small Cajal body-specific RNA 17 (also known as U12-22 scaRNA) is a type of small nuclear RNA which localises to the cajal bodies and proposed to guide the modification of RNA polymerase II transcribed spliceosomal RNAs U1, U2, U4, U5 and U12.
The complete human U12-22/U4-8 scaRNA is composed of two tandem C/D box dom... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z118/Z121/Z120 | In molecular biology, Small nucleolar RNA Z118/Z121/Z120 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small ... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2018 | small Cajal body-specific RNA 18 (also known as U91 or U4-8) is a type of small nuclear RNA which localises to the cajal bodies and proposed to guide the modification of RNA polymerase II transcribed spliceosomal RNAs U1, U2, U4, U5 and U12.
This snoRNA U91 appears to be belong to the C/D box class of snoRNAs. It was ... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2023 | Small Cajal body specific RNA 23 (also known as SCARNA23 or ACA11) is a small nucleolar RNA found in Cajal bodies and believed to be involved in the pseudouridylation (isomerisation of uridine to pseudouridine) of U1 spliceosomal RNA.
scaRNAs are a specific class of small nucleolar RNAs that localise to the Cajal bod... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2024 | Small Cajal body specific RNA 24 (also known as scaRNA24 or ACA12) is a small nucleolar RNA found in Cajal bodies and believed to be involved in the pseudouridylation (isomerisation of uridine to pseudouridine) of U6 spliceosomal RNA.
scaRNAs are a specific class of small nucleolar RNAs that localise to the Cajal bodi... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%2025 | Small Cajal body specific RNA 25 (otherwise known as scaRNA25, HBI-100, MBI-100, and MBI-114) is a scaRNA, which are a class of ncRNAs characterised as small nuclear RNAs localised to the Cajal bodies.
ScaRNA25 was originally identified in a large scale cloning project in mice.
Later sequence analysis predicted that t... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%204 | In molecular biology, small Cajal body specific RNA 4 (also known as ACA26) is believed to be a guide RNA of the H/ACA box class, since it has the predicted hairpin-hinge-hairpin-tail structure, conserved H/ACA-box motifs, and is found associated with GAR1. In particular, ACA26 is predicted to guide the pseudouridylati... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%206 | Small Cajal body specific RNA 6 (also known as SCARNA6 or U88) is a small nucleolar RNA found in Cajal bodies and believed to be involved in the pseudouridylation (isomerisation of uridine to pseudouridine) of U5 spliceosomal RNA.
scaRNAs are a specific class of small nucleolar RNAs that localise to the Cajal bodies ... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20Z13/snr52 | In molecular biology, Small nucleolar RNA snR52 (homologous to Z13) is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known ... |
https://en.wikipedia.org/wiki/Small%20Cajal%20body%20specific%20RNA%208 | Small Cajal body specific RNA 8 (also known as SCARNA8 or U92) is a small nucleolar RNA found in Cajal bodies and believed to be involved in the pseudouridylation (isomerisation of uridine to pseudouridine) of U2 spliceosomal RNA.
scaRNAs are a specific class of small nucleolar RNAs that localise to the Cajal bodies ... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20CD11 | In molecular biology, CD11 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and D (CUGA) box motifs. Most of the members of the box C/D family function in directing site-specific 2'-O-methylation of substrate RNAs.
References
External links
Small nuclear RNA |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20J26 | In molecular biology, the Small nucleolar RNA J26 is a non-coding RNA (ncRNA) molecule identified in rice (Oryza sativa) which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenes... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20J33 | In molecular biology, the Small nucleolar RNA J33 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleol... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20MBI-1 | In molecular biology, the Small nucleolar RNA MBI-1 is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small ... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20MBI-161 | In molecular biology, the Small nucleolar RNA MBI-161 is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a smal... |
https://en.wikipedia.org/wiki/Vadna | Vadna is a village in Borsod-Abaúj-Zemplén county, Hungary.
Etymology
The name comes from Slavic/Slovak vodná derived from voda (water). Wodna (1237—1242, falsum dated to 1237).
References
External links
Street map
Populated places in Borsod-Abaúj-Zemplén County |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20MBI-28 | In molecular biology, Small nucleolar RNA MBI-28, also known as SNORA3 and ACA3, is a non-coding RNA (ncRNA) molecule which functions in the biogenesis (modification) of other small nuclear RNAs (snRNAs). This type of modifying RNA is located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogen... |
https://en.wikipedia.org/wiki/Small%20nucleolar%20RNA%20MBII-202 | In molecular biology, Small nucleolar RNA MBII-202 is a non-coding RNA (ncRNA) molecule which functions in the modification of other small nuclear RNAs (snRNAs). This type of modifying RNA is usually located in the nucleolus of the eukaryotic cell which is a major site of snRNA biogenesis. It is known as a small nucleo... |
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