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[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D SNAP25 PPP3CA UCHL1 PDLIM5 MT-CO3 OAZ1 CADPS2 LRP1B CREG2 PRUNE2 NTNG2 RGS12 NR4A2 SERINC3 TBC1D15 TF PSMC3 NDUFB8 ARL6IP1 CALM2 RPS28 GABRA1 MT-CO2 INSIG1 BIRC5 MT-CO1 YWHAB MT-ND2 MT-CYB CADM2 LRRC39 SCD H2AFZ KIF5A SYT1 PFN2 EIF4A2 DYNLL1 CIAPIN1 DIRAS1 OLFM1 TOMM20 AP2M1 NRCAM OR2X1P LRRIQ1 CD63 ABCA8 CAMK4 AK5 KLHDC3 RPL37A NDUFA5 KIFAP3 MAP1A TM2D3 MT-ATP6 FIGN MT-ND5 COL6A1 STXBP1 C1ORF56 CLSTN2 EIF4G2 BASP1 DYNLRB1 KIF1A DDAH1 NPTX1 RPL15 THY1 PTGER3 COX7A2 PSMD12 TRHDE RNF11 PLCB1 AP3S1 SYNPR SCG2 HINT1 SLC38A1 RTN1 GNAQ KLC1 SH3BGRL3 RPL31 LMO4 KCNAB2 FTH1 CLPTM1 CDK14 CFH TUBB2A ONECUT2 ITM2C PTK2B ARHGDIA CPE PSD3 IGFBP5 AC010731.4 ITFG1 MAP1B ATP6V0D1 SNAP91 COX7A1 GPM6A DCTN1 SV2B MT-ND4 PEX5L RPL32 DNAJA1 ASAP1 DCLK1 HSP90AB1 ACLY MTATP6P1 NRIP3 C1D RPL39 HIGD1A GUK1 MIEN1 SYNJ1 RPL21 TLE4 RPL13A SLITRK1 ATP6V1B2 CBX6 RPL17-C18ORF32 RPL17 HNRNPA1P40 CYB5R3 AC244489.1 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM3 MT-CO3 OCIAD1 TMEM155 MT-CO1 RTN4 EIF4A2 PCP4 SNAP25 MAP1B COX7C SLC38A1 SERINC1 EFR3A ITM2B CSDE1 GPM6A BASP1 CHN1 RAB3B NUAK1 PNMA2 ATP1B1 GHITM HDAC1 PLCB1 CHL1 VSNL1 GRIN1 THY1 HTR2C COL12A1 ATP6V1B2 SYT1 PGM2L1 TLE4 VAMP2 MT-ND4 SLC24A2 GNB1 LYNX1 DIRAS2 UBE2N USMG5 TMOD2 OLFM1 SYT11 YWHAZ KLC1 PPP2R2C MT-CO2 IQSEC1 CALM1 PRKACB YWHAG MLLT11 ARL6IP1 TUBA1B ATP6V1G1 MAP1LC3B GPR37 NUTF2 NEGR1 IDS ABHD14A STMN4 OLFM2 DNM3 STMN2 RPH3A TALDO1 TSHZ2 UBE2E3 C11ORF84 HINT1 SLC17A7 OXCT1 TBCB ATP5A1 CPE PTPRS KCNIP1 CPLX2 ECM1 PRNP DCLK1 MT-ND3 MTX3 OXR1 TAGLN3 C19ORF53 NECAB1 C14ORF2 PINK1 SLC22A17 CDK5R1 TM6SF1 MSMO1 ATP2C2 CMAS NDFIP1 AZIN1 TCEAL7 MT-ND2 AP2B1 PJA2 DPYSL2 EIF4G2 BSN EDN1 SARAF TUBA1A CLIP3 RPL26 YWHAB HMP19 LRMP MTRNR2L12 KLHDC3 RPL13A PAFAH1B2 FAIM2 RNF11 DDN MAPK1 RHEB RASGRF1 MAP1LC3A ATP2B4 TUBB4A USP5 PEX5L CYCS GPR158 HNRNPH2 NDUFA11 SERF2 CDKN2AIPNL ITFG1 NDUFB5 CNRIP1 ZCCHC17 APP RPL13 TMA7 PSMD8 RNF182 MTRNR2L1 CLTB CAP2 PITHD1 TCEA2 SUB1 CBX6 WASF1 MRAS AP2M1 HMGCS1 PLD3 CYFIP2 DGKG SV2B MRPS21 YWHAH CACNG3 NEFL PRKCG CLSTN1 CADM2 NPTX1 COPRS OPCML ATP5I RPL35 DPP6 POMP KCNK1 UQCRB TPI1 PDE9A C1ORF115 MTATP6P1 RHOB FAM174A GDA SH3GL2 RPL39 APBB1 MARCKSL1 ARHGDIA ATP5H ARL8A CHMP4B FABP6 FKBP8 GLO1 ATP1A1 BCL11B RASGRP1 NDFIP2 FASN COL11A1 CALM2 GSKIP TRHDE IPCEF1 TMEM35 C1ORF233 AP1S1 KIF1A MDH1 NPTXR PTCHD4 ZNF365 ATP6V1A RTN3 SLC12A5 TOX CAMKK2 NREP STXBP1 ATP2A2 TMEM158 WLS MRFAP1 RTN1 RPL11 PSAP HSPA8 ATP1B2 ARL4D MGST1 PFN2 ATP5B MT-ATP6 BNIP3 CFH HIGD1A HN1 LMO4 ARHGAP35 KCNA2 SEZ6L2 TMEM150C MAP4 TMEM160 GAPDH COX6C CLSTN2 LGI3 NDRG4 TUBB2A C19ORF70 RNF208 BEX2 FOXP2 PGAM1 SEZ6 RP11-111M22.2 MAPRE2 AK5 GRIK3 ASAP2 STMN3 PREPL D4S234E CAMK2N2 BTBD1 ALCAM PSMB5 LDB2 MYRIP ALDOC RPL21 MTND1P23 MT-ND1 B2M GABARAP MTRNR2L6 NGRN SNRPN PLEKHD1 NR1I3 RPS3A RPL17-C18ORF32 RPL17 PCDHA9 AC244489.1 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GPM6A SYT1 GDI1 CHN1 CAMK2D SNAP25 ATP1B1 TBC1D15 TUBA1B NREP RTN1 CAP2 PNMA2 CADM3 SERINC1 PEBP1 PPP3CA CALM1 MT-CO2 RAB6A YWHAZ NAP1L3 RAB3B PRNP MAPK1 MT-ND4 VSNL1 KIFAP3 CDK17 RPH3A NRGN UBQLN2 RPL38 PTK2B TCEAL2 STMN3 TMX4 SLC38A1 GRIN1 PPP3R1 DMTN TUBB4A STX1B MT-CYB BSG HPCA NEUROD2 CLTC CLSTN1 GUCY1B3 PPM1A SNCA NUDT21 GTF3A PRKCG GOT2 PPIA TBR1 RPL23A TSPAN7 CNTNAP5 WBSCR17 ADSS MTUS1 PRKAR1A ATP2B2 MAP1B COX7A2L CALM3 CLSTN2 COX8A SLC7A1 PPP2R1A SSBP3 ROBO2 NUDT4 PEG10 STMN1 NAP1L5 CRIP2 PREPL OAZ1 SYN1 FEZF2 C9ORF16 PHYHIPL BAI2 PLD3 UBC CREG2 UQCRH LPPR4 CDH6 ATP1A1 PPDPF KCNK1 SPARCL1 DNAJC5 PIK3R1 NCEH1 CFL1 MT-CO1 RAP2A SLC17A7 EIF4A2 TMEM130 AK5 PPP2R2B ARF3 UCHL1 DBNDD1 STXBP1 ARPP19 NAP1L2 BASP1 COPS8 WASF1 MTHFS KIF1A NR4A1 VAT1L MFSD6 MAGEL2 NPTX1 MT-CO3 CDH13 CD99L2 RTN3 NAT8L CTGF CPLX1 PRKACB FKBP1A SLC9A6 ATP1B2 IPCEF1 SERPINI1 CD59 TSPAN33 NRCAM HMGCR MAGEH1 ARL6IP1 TPPP SEZ6 CALM2 GPR158 FAIM2 PPP1CB TSPYL1 BSN ACTG1 ZNF365 YWHAG RPS15 ATP6V1B2 RPL13A IDS TUBB RPS26 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-CO3 RAB3B MT-ATP6 MT-ND4 SNAP25 TF MT-ND1 TBC1D15 MT-ND3 BIRC5 PDE1A YWHAH RTN1 RTN3 MTRNR2L12 MT-ND2 TLE4 NR1I3 CHN1 MT-ND5 YWHAB MT-CYB RHBDD2 RPL31 PPIA UQCRB RTN4 LMBRD2 DCLK1 LINGO1 TBR1 TAS2R13 SYT1 RP11-111M22.2 SUMO2 HSP90AB1 NFIA RPL38 SCN1B AK5 LMO4 TUBD1 MAP1B NAPB PRNP SCAMP5 CAB39 C1ORF115 PIN1 YWHAG SERPINF1 DLC1 ZNF804A ATP1B1 NELL2 CX3CL1 LYNX1 ATP5J MCHR2 LAMA4 KIF1A SUSD4 SNN MTRNR2L1 SUB1 ESCO2 SLIT1 PSMD12 HS3ST2 CADM2 TMSB4X PEBP1 CHGB KCNAB2 RPL13 GABRA1 CAP2 DYNLRB1 SGCZ NAPA TMOD2 MAPK1 DKK3 SPCS2 IQSEC1 GOT1 TRIM37 VAMP2 TSPAN7 RAB6B PSMC3 EGR3 STXBP1 HAPLN4 FBXL16 MMD SERPINE2 NPTX1 SEZ6L TGOLN2 AP2M1 SIRPA ACTB EIF1AX MYO1B USMG5 EPHA6 CHL1 GNG3 VGF ITFG1 NDUFS5 GNAQ PCSK1N RAP2A COX17 DCTN1 TMSB10 PCMT1 SPTBN1 RFC3 VSNL1 PREPL MAP2K4 SERINC3 PPP3CB PNKP MZT1 MFSD6 QKI CALM1 OPCML ARF3 GABRE ATP2A2 NTNG2 DNAJC5 TSPYL1 SGCD CARNS1 PSAP RP11-638L3.4 ATP6V1B2 ATP6V1A SPOCK1 UBA1 PITHD1 TMEM230 PRKACB NRGN SLC38A1 SPRYD3 KCNK1 WSB2 UCHL1 GPR158 DYNC1I1 SLC17A7 CYCS ARFGAP2 RPL17-C18ORF32 ATP6V0C IDS MTRNR2L6 RPL17 RP11-20I23.1 RPL6 PPP3R1 CDH8 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 RPL36A RAB3B SYTL2 DNAJC21 MT-CO3 MT-ND4 ATP2B2 MTRNR2L1 BIRC5 RPL41 CHN1 RPL37A RPL38 SYN2 PPP3CA HTR1F NPTX1 TBR1 ACTR10 GPR98 NAP1L2 MT-CO1 GPM6A ANO3 PGK1 TSPYL1 CALM1 ATP5J2 FIBP CNTNAP3 OXCT1 YWHAQ NREP KLHL5 PSAP PRDX1 NEUROD2 ASAP1 MT-ND1 TMEM150C SNCB ADAM23 RLIM MED10 SUMO3 TPRG1L NRCAM COX4I1 RTN4 MZT2B MT-ND3 GNAQ CLU NCEH1 CRKL RP11-111M22.2 MAP1B VDAC3 TBCA HSP90AB1 YWHAZ CLSTN1 CKB MYRIP CALM2 BASP1 NELL2 TMEM65 TSC22D1 MORF4L2 LDB2 CADM3 GDA GRIN2A RPL26 NDFIP1 PLEKHH2 RAB6A NFIA RAB1A TMOD2 UCHL1 RNF182 WASF1 PRKCB PRDX3 DNAJB6 SNAP91 CREG2 PCDHA9 SPARCL1 MT-CYB BSN FOXP2 PCDHB4 RELN MTRNR2L6 AC244489.1 NR1I3 PCDHGA6 PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 TBC1D15 SNAP25 MT-ATP6 MT-ND4 MT-CO2 MAP1B MT-ND3 MTATP6P1 RAB3B SYTL2 MT-CYB MT-ND1 MT-ND2 SYT1 CHN1 CTNNA2 BIRC5 RPS28 RPL13A RP11-111M22.2 RTN4 NPTX1 RPL31 BASP1 MTRNR2L12 ARFGAP2 ESCO2 ARHGAP35 SPARCL1 TMOD2 YWHAZ CALM2 FTH1 RPL17 RPS12 SLC17A7 TMEM59L OLFM1 GUK1 RAP1GAP2 PRKACB GAPDH PIK3R1 UQCRB LMO4 PEBP1 PRKCB CALM1 PDP1 RAB6A SNCA ENC1 B3GALT2 TEFM SSTR2 STXBP1 MTRNR2L8 RTN3 ATP1B1 IDS SYN2 BAG4 RPL38 NUAK1 VAMP2 MTRNR2L1 CYB5R3 TF CDC42SE2 RPL21 PCDHGA5 NR1I3 HNRNPA1P40 HMGCR PGAM1 RPL8 MMD RPS15 RPS2 FXYD7 SNX3 PRDX1 SPAG17 NDUFB11 RNF11 RPL41 ANO3 DLL4 NARS SLC9A6 YWHAB MDH1 ZFAND5 PI4KA PINK1 PKM PFKP ATP6V0B ATP6V1B2 KCNMB4 USMG5 MOXD1 TOLLIP STK39 RPL35 SCD5 PLD3 LINC01296 HEATR4 TCEB2 CAMKK2 DKK3 ATP2B4 CADM2 SEMA3A PSMD12 CDKN2D PPIA NUDT21 TMSB4X PGM2L1 RPL15 SIRPA ATP5F1 CDK5R2 RPL6 RTN1 GNAQ EHD3 ATP5A1 PNKD DNM3 RELN KCNA1 CTBP1 NPTX2 GPCPD1 TPI1 GRIN1 GDA CRKL HMGB1P8 GABARAPL1 TAGLN3 MTX3 NDFIP2 ELAVL2 RPS4X C19ORF43 RAPGEF5 NCKAP5 SULT4A1 NRCAM SELT TSPYL1 NGFRAP1 ATP6AP2 GLO1 NDFIP1 SUMO3 C1ORF52 SERINC1 TSC22D1 UTRN SARAF ALKBH1 TRIM36 PSMB7 AP2M1 SRP14 CHL1 PSAP LMO3 AK5 LZTS1 PPP2R2B PRKCG PCBP1 QDPR CLTC NELL2 IGFBP5 LIN7B UROS MZT2B MAP2K1 SERPINF1 MPP1 RANBP1 EIF1 PCSK1N WDR47 BSN PRNP C16ORF13 GPM6A GABRA5 ISCU C11ORF84 BEX1 EPB41L3 C12ORF57 TUBB2A FBXW11 MORF4L2 RABAC1 GDI1 CPE FAM3C NGRN SNAP91 SLC6A17 SMYD2 RAB2A LRP1B SH3RF1 MORF4L1 KIF1A UBE2D2 FAM84A PREPL SYT4 PTMA RPS6 CA11 RAB40B COMMD6 VGF MRPL51 SPOCK1 ATP6AP1 SLC24A2 RPL13 NCAM2 NDUFS6 ACTB INSIG1 SEPW1 NFIA VAPB SEZ6L PJA2 PPP2CA EIF4G2 CAB39 SSBP3 KLC2 MAGED1 MPPED1 NDUFA5 SYNGR1 PEG10 MTPN SPCS2 PNMA2 TUBA1B ETS2 ATP1A2 SYNJ1 KIF3C OCIAD1 ID2 NECAB1 ADD2 BSCL2 TMEM70 KRT17P6 SERF2 MIF TUBB AC244489.1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 SYTL2 CHN1 SNAP25 SYT1 MT-ND3 NPTX1 ZNF385D OR6D1P KIFAP3 PPP3CA YWHAZ EPHB6 PLD3 NEGR1 TSC22D1 GABRA1 CLU CALM1 C4ORF3 PSMD12 PEX5L STK39 RAP1GAP2 KRAS RTN3 JUND HHATL LMO4 BLVRB CLIP2 PCDH17 FGF12 CALM2 RLIM STMN1P1 MDH1 DGKG PIK3R1 SLIT1 DAB2 GRM3 TPD52 MAGEH1 MANBAL MRFAP1 QDPR COPRS OLA1 RPH3A TSPAN18 LGI3 EFHD2 ZNF365 PAFAH1B2 MT-CO2 DHCR24 PJA2 SERINC1 MAPK8IP2 MT-ND1 RCAN2 SUMO3 ELAVL4 SLC24A2 FAT3 TEFM SYT13 RP11-454L9.2 ACTG1 COPS8 RAPGEF5 LMO3 PRKCB SERINC3 DCLK1 TCEAL2 TM2D3 PPP3R1 SAP18 WASL PFKP ATP1B1 SYNJ1 CADM2 OPRM1 COL24A1 MT-ND4 HMP19 ATP6V1C1 TGOLN2 KCNAB3 CKB NDN LINGO1 SARAF NELL2 PCYT2 VAMP2 ATP1A2 GPM6A PREPL PGAM1 CAMK2G IDH3A OLFM1 NEFL MYEOV2 ITPR2 STX1A MBP HIGD1A ACTB DYNLL2 BAI2 TSPAN7 CDH7 MTRNR2L8 RHEB C11ORF31 IDS GSK3A RPS28 AC244489.1 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RAB3B PRNP MT-ND4 CABP1 MT-ND3 CHN1 RP11-111M22.2 CPLX2 NPTN ELMO1 CADM2 TBR1 GNB1 TLE4 VAPB RPL31 KCNH5 GPM6A CLSTN2 NDFIP1 NPTX1 RTN1 ZNF385A SYT1 MTRNR2L12 MT-ND2 PLEKHH2 CPE MT-CO3 CFH RPL35 CLSTN1 ATP6V1G1 THY1 FTH1 RPL11 NBL1 TBCB FKBP8 CTSD SH3GL2 FILIP1L EIF4A2 ATP5B SIRPA HSP90AB1 FAM84A DPYSL2 CADPS2 ITM2C RTN4 ACTG1 MAP1B SSBP3 THYN1 SPTBN1 CAMKK2 CDK5R1 JUN NDRG4 MT-CO1 TMEM130 NECAB1 CCT5 MT-ATP6 SCN1A ATP5A1 MORF4L2 ARF3 MME ATP1A1 IPCEF1 PCMT1 IDH3A LRMP SPOCK1 NAPB SUMO1 RPL38 SLC24A2 GLO1 PLCB1 PTK2B MLLT11 ADAM23 SYT3 KCNK1 NHP2L1 SLC7A1 GRIN2A CSRP2 ATP2B2 NDFIP2 SDC2 HTR1F KCNMB4 MT-ND1 HAMP CALM2 MTRNR2L1 SNX10 MT-CYB TOMM70A TNFAIP8L3 FGF12 POLR2M NEGR1 PREPL OR6D1P TMOD2 MDH1 LPPR4 NAP1L3 STX1A ATRN SMIM13 ATP5I ANKRD18A GABPB1 MYEOV2 TPD52 HSP90AA1 ATP1A3 FER1L4 LYNX1 LMO4 RAB6A PHYHIP RPL37A SDCBP RPL13A EID1 NRCAM RFK GSTT1 CDC42SE2 RAB6B PNMA2 IDS TUBB3 BSCL2 ATP6V0C RP11-20I23.1 RP11-219A15.1 PCDHAC1 PCDHA4 PCDHA9 PCDHA10 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 RAB3B MT-CO3 MT-ATP6 MT-ND3 RP11-111M22.2 SPARCL1 NPTX1 MT-CO2 MTRNR2L12 MT-CYB MTRNR2L1 PEX5L DIRAS2 GPM6A MT-ND1 SNAP25 ZNF385D PSD3 FAIM2 PDP1 MTATP6P1 SSTR2 CLU ARFGAP2 RPL36A RTN3 TSPYL4 INPP5F TBR1 PGM2L1 PRNP TLE4 CADM2 NFIA SSBP3 PIK3R1 PRKACB SLC39A10 SYT1 ATP2B2 RPL31 ESCO2 RPS12 ATP1A1 NECAB1 MT-ND4L NDUFA1 FTH1 RTN1 MTRNR2L8 SYT11 ATP2A2 RAB2A HSPE1 MAP1B RELN PCDH17 CHL1 TMEM59L SKP1 NHP2L1 ATP1A3 NDFIP1 PRKCB DKK3 SARAF RPL37A MT-ND2 CALM1 KCNH5 CHN1 HSP90AA1 HOMER1 CD24 DYNLL1 CALM2 NPTN DPP6 SLC9A6 NR1I3 RP11-219A15.1 IDS CALM3 RPS15 CHCHD2 GUCY1A3 CHGB ANAPC13 HMGCR COX8A RP11-959F10.5 PLCB1 CDC37 CABP1 PJA2 UBQLN2 PI4KA NRGN MAP2K2 NMNAT2 CRKL SYN2 LPPR4 PPP1CB CNTNAP3 TMSB4X ANO3 CDH7 CKB CREG2 ZCCHC17 TCEB2 BCAP31 NDUFA5 FBXW11 SCN1B SCN3B PHYHIP HS3ST4 NDUFB3 SPOCK1 CA11 MYEOV2 PRKAR1B RAB3C CNTN1 ATP6V1C1 UBE2D2 PEBP1 CADPS2 ATP2B4 GABARAPL2 CAMK2D LINGO1 KCNC3 GHITM SYNGR1 ATP6V0C BSN AURKAIP1 BSG NDUFS6 RXFP1 TMEM130 OPCML KCNMB4 GPR158 PGAM1 GRIN2A CTSD RNF212 CAMKK2 TUBA1A FXYD6 FLOT2 TSC22D4 PTPRM OAZ1 FTL WBP2 MT-ND5 THY1 MAP1LC3B SH2D6 SUCLA2 PAPPA MTRNR2L6 EIF1AX CLSTN2 RPL21 PNMA2 NCEH1 UBE2E3 NGFRAP1 CCDC152 C3 EIF4A2 IPCEF1 LRP1B SPOCK2 NDFIP2 CPNE8 CDC42SE2 TSPAN7 RP11-20I23.1 POLR2K CLTC CTXN1 MRPS7 VWA5A CYP26A1 SUMO2 FBXL16 SYNJ1 DDAH1 SNX3 PPP3CA CACNB1 APP SCN2B NAT8L RPS19BP1 YWHAB PGK1 SERINC3 UCHL1 CYP26B1 STPG2 ENO2 PLD3 SLC12A5 MAGEH1 HRK PITHD1 FOXP2 ATP6V0E2 TESPA1 CAPZA2 SYNPR ANXA7 NDUFS5 CEND1 PTCHD4 SEMA3A FXYD7 COL5A2 BEX1 ATP5E GAP43 SLC1A2 KLHL5 NEFH RPRM RPS28 GRM3 VSNL1 ARF3 RPL39 DCLK1 ZFAND5 STX1A CLSTN1 NDRG3 DUSP6 WASF1 CX3CL1 RPL32 WLS SMIM13 COL6A6 PTK2B ETV5 NAP1L2 COPS7A IGSF21 FILIP1 DYNC1I1 TUBA1B BAI2 B3GNT1 TOMM20 SRP14 ROBO2 RPS26 RPL7 GNAQ C7ORF50 RTN4 NCDN TMA7 CLEC2L BMP8A ATP1B1 OCIAD1 STMN2 NDUFB1 SYT5 SLC8A2 GLUL YWHAG TMEM65 ENC1 AZIN1 KCNA2 SCN1A LMO4 OXR1 CISD1 NFE2L1 TF RNASEK-C17ORF49 RPL17 RPL6 RPL17-C18ORF32 FAM3C RPL3 NGRN RPS3A RPS2 TUBB AC244489.1 SYTL2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ATP6 MT-CO1 MT-ND4 MT-CO2 CHN1 MT-ND3 SYT1 PRNP MT-ND2 MTRNR2L12 MT-CYB SNAP25 PPP3CA SYTL2 RNF11 CLU MAP1B VSNL1 RP11-219A15.1 AK5 SARAF RTN4 CALM3 MOBP STMN1 MTRNR2L8 KCNA1 ACTB CABP1 CREG2 MT-ND1 ENC1 ATP1B1 MT-ND4L RP11-111M22.2 NPTN GRIN2A THY1 ENO2 DCLK1 PJA2 SERINC1 RAB40B PTPRN ITFG1 PRKACB PRDM8 TSC22D1 FTH1 COX7B CDK5R1 APLP2 NARS CLSTN1 GPX4 DYNC1I1 SLC17A7 CPE STMN2 DKK3 AP1S1 NRGN CAP2 NPTX1 FAIM2 MTRNR2L1 PNMAL1 NECAB1 MTATP6P1 WASF1 FAM198B FXYD6 CSDE1 GPM6A ZNF365 RHEB TSPYL1 PREPL SLC39A10 RTN3 BCAT1 ATP1A1 TOMM7 NUAK1 CNTN1 OXCT1 PTMA CA11 BIRC5 TF CFH DPYSL2 SOD1 GSK3A SPARCL1 BSG ARL6IP1 CD99L2 ATP9A TPI1 MRFAP1 KIF3C RELN BEX2 SNX10 CHP1 SCAMP5 SPOCK1 PFN1 BAG4 COPS8 NFIA CALM2 CCDC25 SYT4 RAN MFSD2A PPP3R1 HSPB1 LDB2 SPRYD3 ETS2 SERINC3 TPT1 ATP6V0E2 MLF2 CKB MTCH1 ZBTB18 PIN1 ATP5C1 TM2D3 NRN1 EFHD2 C16ORF13 UBL5 MFSD6 JUN NRCAM PCDHGA5 LMBRD2 AP3S1 SERPINE2 REPS2 NDUFA11 RPL38 WBP11 SIRPA PNKD YWHAH OPN3 COX6C CADM3 SRD5A1 RPL23A MOXD1 ATP5E NELL2 NDUFB5 ATP6V1B2 SERTM1 FIGN C3ORF80 IGFBP2 UBQLN2 AP2B1 JUND PIP4K2A BAI2 AZIN1 HRK RP4-635A23.4 FKBP4 GDI1 ANAPC11 ATP5I RHOB CCK ARHGDIG SERPINI1 TUBB4B CACNB1 HOMER1 RTN1 SNCA ATP6V1C1 MYL6 SSTR2 FKBP8 ISCA1 OPRM1 HDLBP DNAJB6 PCDH19 MANBAL PTPRS SLC12A5 RSPO3 CALM1 NDUFS5 PLEKHH2 GADD45GIP1 SKP1 APBB1 TMSB4X USMG5 STMN4 FKBP1A PTPRT ARPP19 CTNNA2 RPS10 PPIH TMEM130 EXTL2 SNCB PAPLN BRK1 TMEM158 PEG10 RELL2 LYSMD2 PCDH17 ACTG1 PRKCG CAMK2G SLC9A6 IDS TMEM70 ANKRD26P3 RAB6B SEMA3A GOT1 ALDOC SCOC NOP10 ZCCHC24 CDC42SE2 RAB11A ENSA GPR116 TESPA1 SYT5 EIF4A2 VAMP2 CPLX1 APP NAP1L2 C1ORF115 LMO3 NBL1 CDK17 ATP6V1G1 FABP5 CD63 SULT4A1 SNAP91 RAB6A PRKAR1B NDUFB7 GNB1 PFKP PPP1R9B SYN2 CDK5R2 INPP5F MAL2 WASL COA4 RPL11 ASAP1 YWHAB SLC22A17 UHMK1 HSP90AB1 NREP SEPW1 NFE2L1 UQCRC2 CCT5 SUCLA2 LMBR1 C16ORF93 PGAM1 TUBA1B TCEAL7 UCHL1 PLCB1 PDP1 ITPR2 UQCRH NEUROD2 HCN1 LINC01296 PSMC1 IPCEF1 LDHB ALDOA MIF ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SYT1 RAB3B MT-ATP6 MT-ND2 RPL37A MT-ND4 SNAP25 MT-CO2 PPP3CA SYTL2 RPL31 MTRNR2L12 GPM6A MT-ND1 CLU ATP1B1 CNTN1 RP11-111M22.2 ARFGAP2 SLC24A2 ARL6IP1 RAB6B RTN1 NAPB HSP90AA1 VSNL1 RTN4 ATP5G2 ENO2 NCAM2 YWHAG THY1 RPL38 TMSB10 CPLX2 ARPP19 MT-CYB PIK3R1 SPARCL1 STMN2 RPL26 PEX5L TMSB4X LMO4 KIF5A NRCAM TSPAN7 B3GALT2 FAIM2 SCG2 RPL21 SERINC1 GRIN2A RPS27A PNKD FXYD6 PPP3CB RPL39 PREPL CADM2 TPPP ATP5J MAP1B CHN1 NECAB1 SLC1A2 VIP RPL7 RTN3 CHCHD2 ARL4C GLO1 PTPRN ACTB DPP6 DYNC1I1 RPL11 SNAP91 CALM1 ATP2B2 EIF4A2 RGS12 WASF1 CDH13 PSAP NUAK1 CALM2 MRPS21 APP MTRNR2L1 AC244489.1 PTPRS SCD5 GNAQ AP2M1 MTATP6P1 PKM FTH1 SYNPR PEG10 PRKCE ANKRD18A GOT1 GUK1 PRKCB NDFIP1 SLITRK1 UQCRB SCN1A MTRNR2L8 CHMP4B SLC9A6 DYNLL2 SYT13 CNTNAP3 DIRAS2 TBR1 RPS12 VAMP2 SERF2 SLC17A7 CLTC KCNC2 DACH1 HINT1 ATP1A1 APLP2 AES OXR1 ZBTB18 NEGR1 RPS10 RPS3A RAD23B RPL19P18 UQCRC2 UBE2QL1 ITM2B MT-ND4L GPX1 GDI1 CCK RCAN2 NPTX1 CALM3 SERINC3 TSPYL1 SERPINI1 PDZRN4 TAGLN3 RP11-44D5.1 ATP6V0B KIF1A MT-ND5 KIFAP3 NPAS3 RPL32 SLC39A10 CPE CKB FAT3 RELN C14ORF2 PITPNA MT-ND3 CYP1B1 DPYSL2 CTSD DLX1 YWHAZ TMEM59L FIGN BASP1 RPL36A ATP1A3 PCDHGA5 PDP1 TEX2 FAM131B PPP2R2C CHST11 CLSTN1 ELAVL2 PNMAL2 ZNF804A NDUFB3 SMS MRFAP1 TUBB4B SCN3B TCEAL2 TRIL B3GNT1 EIF1B PPP3R1 SKP1 CSDE1 COX7A1 MAGED1 SUB1 MAP2K4 TRIM37 EIF4G2 CADPS2 PRKACB CREG2 NTNG2 RPL15 GABRA1 MAP7D1 AP2B1 GABARAPL1 MRPL52 CD24 OLFM1 PLCB1 DCTN1 CLTB PFDN1 GUCY1A3 SPOCK1 OCIAD1 RHBDD2 SULT4A1 KIAA1211 CYCS TMEM35 NDRG4 GNB1 CA10 ACTR1A SLC12A5 ACTG1 ATP5O SPTBN1 HMGCR ZBTB20 REEP5 ENC1 ZNF536 SCN1B ISCU UQCRH ELAVL4 MORF4L2 ATP6V1E1 SEPW1 DNM3 OPRK1 SLC24A3 SUMO2 DNAJC6 SLC25A4 LPPR4 NRN1 VSTM2L PFKP NFE2L1 ATP5J2 SELT NDFIP2 ACP1 APLP1 EID1 SGCZ TCEA2 RPL23A CLSTN2 UTRN RPS15 RPL41 CLTA LGI3 SLC25A6 PAQR9 GYG1 RPS6 LZTS1 STXBP1 DYNLRB1 C1ORF52 HOMER1 BIRC5 SOD1 RAP2A TTN HPRT1 MAP2K1 ATP5H VAPB ERBB4 YWHAB RND3 MAPRE2 FAM84A CEND1 BAI2 ATP2A2 SLC7A5 LMO3 TMOD2 PPP2R2B PENK NWD2 WBP11 CDK14 GDE1 CDH8 CNRIP1 GRIK3 MTND2P28 MARCKS SYN1 PAFAH1B2 DGAT2 TSPYL4 NDUFS5 VAMP1 ATP6AP2 ADSS PTK2B RPL13 RGS4 RAB4A BEX4 NFIA ZFAND5 COA3 FGF12 IMMP1L FAT1 HNRNPH2 PHYHIP STMN1 LINC00086 CAB39 ECM1 CTBP1 CACNA2D2 ADAM23 GRINA CD63 MLLT11 CA11 RPL12 REPS2 RPS28 COX6C HCN1 SNX10 ITM2C MAPRE3 FBXO2 TBCB COX7A2L YWHAH UQCRQ PRNP SCOC KCNA1 RPL10A TESPA1 NEFM RAB2A ATP6AP1 ALCAM LUZP2 ATP2B4 COX5B NDUFV1 STMN4 CABP1 COX7C ALS2CR11 WDR47 TRIM36 EFR3A RPL13A TPT1 PJA2 NEUROD6 HSP90AB1 EFHD2 NDUFC2 EGFR KLC1 ATP6V1A SYT4 SAMM50 MRPS7 SEC61G NAP1L3 SARAF SEMA5A FUNDC1 ZBTB39 AK5 IQSEC1 DKK3 DNAJA1 RAB3IP C1ORF95 BAALC PPP2R4 RPS2 NPTXR WSB2 NGEF INPP5F PNMA2 ASAP1 TSC22D1 SAP18 RAB40B GAPDH CTNNA2 CDK17 UQCRC1 SEZ6L2 PSD3 PSMC3 ATP5I TGOLN2 SPRYD3 RNF11 CDK5R1 PRUNE2 CAMK4 ITFG1 VGLL3 SEZ6L SNN SEMA3A CHL1 PSMD2 CAP2 CADM3 RP11-20I23.1 ATP6V0C BSCL2 GTF2H2C_2 ALDOA NSF RPL3 MTRNR2L6 IDS MBOAT7 PCDHA9 PCDHAC1 PCDHA4 PCDHA10 HNRNPA1P40 PCDHGA10 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RAB3B HNRNPA1P40 SYT1 RP11-111M22.2 ZNF385D CHN1 SEPW1 MTCH1 NRGN TMEM59L MT-CO3 NFIA CADM2 MAP1B BIRC5 OR6D1P TUBD1 SYTL2 ATP2A2 CADM3 PPA1 PDLIM5 UCHL1 MZT2B DNAJC5 FAIM2 GNAQ SLC17A7 SPOCK1 ATP6V1B2 SUB1 THY1 NUDT21 PTMA NDUFB2 NECAB1 SYT11 DKK3 HSP90AB1 BEX1 CALM1 SNCA MAP4 PEG10 TCEA2 RPL7 ATP1A3 CAPZA2 C7ORF50 TMEM14A TCEB2 NARS SARAF LIN7B SLITRK1 RPL38 HOMER1 CLSTN1 PIN1 C1QL2 EPHB6 SYT4 PGK1 HSP90AA1 NDFIP1 PRKAR1A CERS6 DSTN SERPINE2 MRPS21 PPIH MT-CO1 MORF4L2 NRCAM MYL6 PFKP RPS4X SPTBN1 GDA RAP2C MAP7D2 C14ORF2 SYNGR1 CDC37 ACTG1 RPL31 OLFM1 COL6A1 MRPS7 ADAM33 ASAP1 MAG RPL37A LYNX1 ANXA1 C12ORF49 ATP5B COA3 HHATL CKB UROS NPTXR PEBP1 MT-ND4 PAM ATP5J2 MAP1A YWHAZ ATRN TPPP PRDX5 TBR1 SYT3 GPM6A RPL41 RPL26 PET100 TMSB4X TUBB2A BRK1 CALM3 TSPYL1 NDUFA11 KCNAB2 AES TUBA1B S100A6 GTF2H2C_2 CALM2 GUK1 COX4I1 ATP1A1 CTNND2 TCEAL7 ATPAF1 RXFP1 KIF25 AIMP2 ASPDH ETS2 REEP2 ACTB IGFBP5 LZTS1 TGOLN2 DGKG GRIN2A SV2B SLC12A5 PRKCE RPL10A FIGN MAGED1 GABRG1 BSN STXBP1 OLFML2A ADORA1 SIRPA RGS8 DYNLL1 SNRPE CAMK2G MAFB SLC7A8 KCNMB4 RPL17 SULT4A1 ATP9A UBL4A PDP1 RPS15 RTN4 ELAVL2 AP2M1 USMG5 COMMD6 EIF4A2 RTN3 PCBP1 HINT1 ATP6V0D1 ALCAM UQCR11 ABRACL PJA2 TERF2IP TPD52 YWHAH LMO3 NDFIP2 GRIN1 MTRNR2L1 NBL1 CDK5R1 SMIM12 NDUFAB1 RAP2A COPRS UBE2M TOLLIP ZNF350 TIMP2 HEBP2 SNAP91 FAT1 TMEM141 B3GNT1 ANAPC11 ZFAND5 FTL DYNLRB1 LINGO1 ZNF208 RPL13 CLEC2L GOT1 GAP43 IDS KIF5A CCDC124 AHNAK2 RAD23B ATP6V0E2 ARHGAP6 HSPA4 CDH13 PCSK1N TMA7 ANKRD18A TM2D3 HMGCR OPCML POLR2L PFN2 FAM84A ST6GALNAC3 SLC19A1 RPL32 PINK1 NCEH1 STMN1 DNM3 NPTX1 SYT10 TAC1 TMEM230 FKBP1A TMEM35 FXYD6 PI4KA OAZ1 ATP6V1G1 RP11-219A15.1 CNTNAP3 RPL13A ATP6V0C HMGB1P8 RP11-20I23.1 RPS3A AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 SYT1 MT-CO2 MT-CO1 MT-CO3 MT-ATP6 RAB3B CHN1 MT-ND3 SPARCL1 DIRAS2 SNAP25 ATP1B1 RTN1 ENC1 MAP1B PGM2L1 VAMP2 PTMA MTATP6P1 TMSB4X SCN3B MT-CYB OLFM1 ACTB RTN3 TUBB2A APP STXBP1 YWHAG ACTG1 MT-ND2 ATP6V1B2 TBR1 SNRPN CALM2 HNRNPA1P40 HSP90AB1 STMN2 PSAP AK5 CADM2 NFIA PJA2 KLC1 UCHL1 NDRG4 MTRNR2L1 MT-ND1 KIF1A NGFRAP1 RPRM NDFIP1 OAZ1 NAPB BSN SLC17A7 PSD3 MT3 GPM6A RHEB RP11-111M22.2 ASAP1 CTSD NHP2L1 ENO2 ELAVL2 RNF11 APLP2 ALDOA SV2B CPE BEX1 CALM3 ATP1A3 PKM SEZ6 CAMK2D THY1 CALM1 NCALD CAP2 GAP43 LMO3 LYNX1 CYFIP2 PREPL YWHAB SPTBN1 LMBRD2 STMN1 SULF1 ATP6V0D1 YWHAQ SLC6A17 CLTC HSP90AA1 ATP9A GRINA RAB3A DPYSL2 SCG2 TSPAN7 TUBA1B ATP2B2 PGRMC1 GUCY1B3 SNCA TOLLIP OXR1 TMEM14A TUBD1 MTCH1 GNAQ PLCB1 GABRA5 GUK1 PCSK1 NECAB1 ARFGAP2 IDS RP11-20I23.1 ATP6V0C NR1I3 SPOCK2 SYT11 RPL26 SLC12A5 ITFG1 FAM131B ADD2 SYN1 MT-ND5 GRIN2A SUB1 PRKAR1A PRNP KIFAP3 CRIM1 NRIP3 MT-ND4L NNAT RGS4 CRYM TERF2IP KIF21A RTN4 DYNLL1 PPP3R1 PNMA2 PDE1A PRKCB SULT4A1 ATP5A1 TLE4 ENO1 SLC1A2 MORF4L1 PPP3CB ARL8B PPP3CA PPP2R2C RAP2C WBSCR17 BCL11B DNAJC5 MAL2 RAB6A UBA1 TMEM130 DNAJC6 BIRC5 DIRAS1 NAP1L3 KIF3C PFKP NREP EFHD2 MTRNR2L6 ZNF385D SYT13 ARHGDIG RHBDD2 MTRNR2L12 FBXW11 PCMT1 C19ORF43 SERPINI1 ATP5G1 CNTN1 AP2M1 RAB6B SERPINE2 TSC22D1 GRIK3 YWHAH NARS UBE2QL1 MAPRE2 CDK5R1 MANBAL SUMO2 MTRNR2L8 GPX3 RPL13 CABP7 STRAP PLCXD2 SMS MAPK8IP2 CHGB ITM2C CLIP3 PMEPA1 PHYHIPL SLC38A1 INPP5F PNKD MDH1 ATP6V1C1 RPL37A ARF5 MRAP2 PSMC5 EIF4A2 INSIG1 OCIAD1 RPS15 COX7C SYT17 NXPH3 SPCS2 TMA7 MRPL33 RPS3A C1ORF115 EPS15 ATP2A2 HDLBP ATP6V1F SKP1 USMG5 PNMAL2 PPP2R1A NRGN RPS28 CSDE1 PAK1 AP2B1 WDR47 MYL12B ATP6AP2 C14ORF2 GHITM MSMO1 KCNF1 RXFP1 CMAS CLSTN2 BSG SERF2 VDAC3 SELM HSPE1 EIF4G2 UHMK1 PCP4 CIAPIN1 PET100 PPP1R9B BASP1 BAI2 STMN3 SYNJ1 CNRIP1 PRKCE CTXN1 SEPW1 MGST3 PPP2CB ARL6IP1 PSMB5 ADAD2 MBP COX8A CD99L2 PEBP1 SNX10 UQCR10 RBX1 PRKCQ SCAMP5 RPL31 CTGF SSTR2 FBXL16 IPCEF1 SUMO3 NPTX1 MAGED1 RPL18A UROS TLN2 SCOC CLSTN1 TMSB10 DNAJB6 HS3ST4 MAP4 NUDT21 RAP1GAP2 NGEF SDK2 FAM127A NPTN NCDN HN1 EFR3A NBL1 PFN2 GPX4 CNP YWHAZ EIF1 EDIL3 SIRPA NDUFA13 ESCO2 TBC1D15 MIR6723 TRIM37 SEMA4G SOD1 AP2S1 NRCAM EIF1AX BEX2 SH3GL2 CCDC85B APLP1 UBC GABRA1 FSCN1 TRIB2 EPHB6 ARL2BP TUBB3 SLC25A22 GADD45GIP1 FTL CFH COX14 PDE9A CABP1 COX5A PLP1 MAPK1 CYC1 ATP5F1 CACNB1 EID1 TPD52 LSM4 VSNL1 PRKAR1B KIF5A SYT6 B2M FARSA HNRNPH2 TMOD2 SYN2 APBB1 NAP1L2 TAGLN3 TMEM132D LRFN3 NEFM SEC61G RPL12 NUAK1 C7ORF50 C6ORF1 MORF4L2 SLC22A17 MFN2 ARPC4 AC073264.6 TMX4 ROBO2 PPP2R2B FKBP1A IDI1 GCHFR FAM198B LAMTOR1 PPA1 TNS1 SLC24A2 SIGIRR GABRA6 GAPDH MARCKS NDUFB8 RAB37 POLR2K MAP2K1 CHRM2 NEK7 CISD1 BNIP3 ELMO1 KLHDC3 YAE1D1 NDUFS6 LINGO1 SRP9 HSPA8 TKT CDKN2D COX5B LGALS1 ATP5G2 NDUFB2 BAG4 FAIM2 TTYH2 RAPGEF5 C16ORF13 NFE2L1 REEP2 GOT1 CHP1 COPS8 CAMK2N2 CFL2 PTPRN NOP10 ANXA6 ZBTB18 DRAP1 THBS2 FAM84A TOMM20 MRPS28 SLITRK1 RAB11A ATP5J RAD23B STMN4 CKB NDUFB10 CLU SEZ6L RAB2A LINC00116 PNMAL1 NDUFC1 IDH3A HPRT1 BAD TPT1 CHMP5 PPP1CB KCNK1 NIPA1 BEX4 MLLT11 ABRACL TMEM35 AP1S1 CD59 WASF1 KLC2 SERINC3 DYNLL2 WSB2 BRK1 SLC9A6 VDAC1 ANAPC11 FBXL15 STX1B AZIN1 CITED2 FKBP8 HS3ST5 SERTM1 RPL32 CYCS ARL1 NGRN ATP6V1A GNG3 KRAS RFK MRAS FABP3 RPL38 PPM1A PIK3R1 LDHB PTGDS STK39 IGSF21 HPCA DNAJA1 RPS4X STX1A VEGFA SYNGR1 CTBP1 SOX9 CDK14 TSPYL1 OLA1 ARHGDIA RAB4A HMGCS1 RCAN2 PTGES3 DHCR24 PTPRT LANCL1 AES CPLX2 HOMER1 EEF1A2 NXPH4 ADAM23 COPG1 SCD5 B3GNT1 SPRYD3 ISCA1 SYT4 TEFM CHL1 NEGR1 PEA15 QDPR PSMC3 PITHD1 MLF2 RPS12 RPL8 HEATR4 PEF1 DYNLT3 DMTN LAMTOR5 PID1 LHFP RAN SERINC1 PACSIN1 PARM1 CCT5 DLD TUBB4A MRPS21 SLC2A1 BAALC NUDT4 SOX4 PDYN UBE2N GSG1L GDI1 RHOA SSBP3 NDFIP2 NEFL MAP7D2 OAT AKR1C2 RNF182 POLR2I NDUFB1 PSMD2 PEG10 CAMK2G ATP6V0E2 TSPYL5 PINK1 FAM163B EHD3 CPLX1 SDCBP SMIM13 TOMM22 TUBA1A PHB MAP2K2 SARAF EPDR1 KLHL12 PGAM1 PHYHIP RRM2B SERP2 ATP5I WASL UBL5 VAT1L CADM3 RASSF8 CDC42SE2 CYB5R3 COX4I1 JUND PLOD2 PSMC1 RPL11 NDUFA11 RPH3A AC244489.1 DCLK1 ARL6IP5 FOXP2 GNB1 RASGRP1 CDH24 HMGCR OSTN MTPN UQCRH CFL1 TCEAL2 FTH1 GPR158 MARCKSL1 TUBB4B FAM149B1 ATP5G3 CBLN4 GDA FIS1 UBE2E3 TBCB PCBP1 CHMP4B NAT8L COPRS CREG2 SPOCK1 FAM3C LRP1B PTPRN2 OR6D1P ALDH5A1 PRKACB PNMA1 UBB RPL39 CTNND2 HINT1 RPS27A ARPP19 MPPED1 TENM1 ATP6V1G2 RPL3 BSCL2 APOLD1 RPL41 RPL13A RPS2 PCDHGA6 PCDHGA5 PCDHGA10 PCDHA10 PCDHA4 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 ATP1B1 SNAP25 CHN1 CALM2 MAP1B SLC17A7 ELAVL2 CALM1 GPM6A MT-CO1 DPYSL2 DIRAS2 TUBA1B TMSB4X MT-CO3 HSP90AA1 APP VAMP2 ITM2B PGM2L1 RTN1 SERINC1 PTMA BASP1 MT-CO2 SLC1A2 PEBP1 HSP90AB1 MT-ND4 RAB3B ENC1 SARAF ACTG1 PLCB1 SYN2 EIF4A2 STMN1 RTN3 YWHAG ACTB DKK3 B3GALT2 TAGLN3 NDRG4 GAPDH GDI1 NPTX2 ITFG1 OAZ1 SLC38A1 PKM RTN4 TMSB10 FAIM2 CAP2 SLC9A6 PREPL TBR1 CPLX1 SUMO3 SNCA SSBP3 TLE4 FXYD6 GRIN1 SKAP2 NAP1L3 COX7C DYNLL1 PSAP PSD3 BEX1 SV2B SCG2 ATP6V0E2 TUBB2A CLSTN1 TSPAN7 STXBP1 SYNGR1 RPS15 TSPYL1 PPIA ARPP19 PRKACB CNTN1 OXR1 UCHL1 MAPK1 ARHGAP35 PGAM1 NRCAM CAMK2D HMP19 NREP CYFIP2 DHCR24 KIFAP3 DCLK1 ATP2B2 GNAQ GHITM IPCEF1 SLC6A17 ATP1A3 HMGCS1 NDFIP2 EFHD2 STMN2 PRKAR1B MT-CYB PGRMC1 MLLT11 YWHAH LMO4 PFKP RPL21 NPTN SYNGR3 NFIA MTRNR2L1 GNB1 NGFRAP1 STUB1 MTCH1 ELAVL4 IDS SUMO2 KLC1 ATP5B THY1 MTPN PDP1 SLC24A2 CDK5R1 ZFAND5 CPLX3 LMO3 RAB6B TOLLIP KIF21A ATP6V1B2 VSNL1 WBSCR17 TMEM158 BEX4 DNAJC6 OPRM1 CRYM PCDHGA5 CHL1 TUBB ATP5G3 NRGN SRP14 FKBP1A TOMM20 SPTBN1 NAP1L2 SCD5 RAP2A APLP2 C1ORF115 RAB2A CADM2 ETS2 SNAP91 RLIM CLU EIF1 DNER VDAC1 B2M SERINC3 TPPP JAKMIP1 SEZ6 SCN3B HMGCR CMAS MSMO1 PCSK5 MAP4 AP2B1 HN1 CLSTN2 SLC7A8 DYNLRB1 TMEM59L CKB PRDX3 NNAT RHBDD2 IDH3A MAGED1 SEZ6L PTPRN SH3GL2 APLP1 COX7A1 TSPYL4 KIF3C CHGB ADAM23 ARF3 ENO2 CAMK2G OLFM1 IGFBP5 FAM127A BSG LPPR4 RPS28 MT-ATP6 ENO1 PIK3R1 ATP6V0B CPE NAPB PJA2 ATP2A2 PPM1A SLC22A17 SYN1 PAK1 BAI2 CADM3 SULT4A1 SMIM13 TSC22D1 MDH2 GABRA1 PPP2R1A SERPINE2 CTNND2 TGOLN2 DNM3 UBC LMBRD2 CEND1 SKP1 SLC8A2 HS6ST3 TMA7 NUAK1 PEA15 ARL8B SULF1 RPL15 PRKCB VPS35 ARL6IP1 STX1A MAP1A SOD1 RNF11 ATP6V0C NSF RP11-20I23.1 ARFGAP2 CAPZA2 TBC1D15 PCDHGA6 MRAS YWHAZ TMEM14A CDH6 RNF208 ATP6V1F PTN ELMO1 KIF1A SDCBP PACSIN1 SERPINI1 ADD2 CX3CL1 VAMP1 TMEM200C PRNP MAP2K1 TUBA1A SYT5 ARF1 CLIP3 FTH1 DYNC1I1 PFN2 CBX6 TERF2IP NMNAT2 DDAH1 SERF2 NDFIP1 PPP2CA TCEB2 RNASEK-C17ORF49 SNRPN ID2 TUBA4A MTRNR2L12 ATP9A PDE1A CTGF PRKAR1A PI4KA RAB3C NXPH3 SUB1 EIF1B CSDE1 KCNF1 PHYHIP LSM4 YWHAQ JUND RPL35 MPPED1 FGF12 MAGEH1 SYNPO FAM134A FAM163B TKT MAP1LC3A UBE2D2 MZT2B MAP1LC3B RPL17 PPP3CA LAGE3 PNKD CFL1 CORO2B EIF4G2 C19ORF10 MTRNR2L6 PNMA2 TBCA RAB1A MARCKS KIF5A BCL11B GOT1 ACTR10 BLOC1S1 NUDT21 BEX2 MMP24-AS1 TPT1 HTR2A UBE2V2 LGI2 SELT OR6D1P TPI1 ATP5I PTGES3 ARF5 RPS27A APOD TMEM65 TUSC2 SYT4 AK5 GUCY1B3 ATP6AP1 ATP1B2 SPARCL1 TCEAL7 SNCB EFR3A ATP6V1E1 C14ORF2 MED10 STMN4 NCBP2-AS2 BAALC UQCRQ RGS4 PNMA1 ACOT7 PLCXD2 MAP2K4 ARHGAP6 DIRAS1 HINT1 PET100 PRPS1 MT-ND4L KLF10 IDI1 NRIP3 CAB39 ATP6V1A TUBB4B POMP EIF1AX SYT13 MAL2 SCAMP5 ALDOC SLIT1 GNG3 ATP6V1G1 PPP1CB C6ORF1 RPS4X NGRN RPL13 PTPRM KIAA1045 GABARAPL1 HTR4 KCNAB2 PFDN1 LINC00087 UBQLN2 SNX10 CCDC85B GABRA5 BNIP3 PAFAH1B2 TMX4 CFH UBE2M GNG2 PSMB7 RAD23B ENOPH1 CHMP5 GSTO1 ENSA SLITRK1 NDUFA4 ETV5 CYCS TOMM70A TPRG1L PIN1 YWHAB MORF4L1 TF NR1I3 MPP1 AES CITED2 PSENEN MT-ND1 ATP1A1 LIMK1 ST6GALNAC3 LYNX1 EPS8 FAM19A2 CHCHD2 LDHB MT-ND2 RP11-111M22.2 TCEAL2 ITGA6 B3GNT1 RPL18A ARL2BP SEMA5A OXCT1 AKAP12 MLF2 LAMTOR1 DOCK10 RHEB NIPA1 RAB4A PITHD1 MAPRE2 NME1 ARSJ HSPE1 CAMKK2 TMEM70 WASF1 PSMA7 UQCRH FXYD7 HOMER1 PRUNE2 CACNB1 DNAJB9 HNRNPH2 NRSN2 MZT1 C3ORF80 HS3ST5 CDH24 CAMK4 PSMD12 SPOCK2 ABHD8 SLC25A6 HS3ST2 SPARC RPL11 C1ORF52 PDCD5 NEGR1 INSIG1 CLTA OCIAD1 ITM2C ASPDH PCSK1 LAMTOR5 RPS2 SSTR2 SH2D6 BAG4 RCAN2 DEXI RAP1GAP2 INA DNAJA1 SMYD2 PPP1R9B PRDX2 CLTC NHP2 TUBB3 ATP5G2 RASGRP1 UBA1 MAPRE3 MT3 SDK2 PLD3 ROBO2 GMFB RRM2B ZNF425 BEND5 NEK7 SLC7A5 COX8A LDOC1 PPDPF CTXN1 CAMK2N2 CTNNA2 FTL TXN ANAPC13 KLHDC3 CTSD TUBB4A DGAT2 SAP18 MAPK8IP2 CAPZB CNRIP1 STRAP AP2S1 PSMD2 FBXW11 RPL41 KLHL5 TMEM150C C11ORF31 FASN SPR ARL8A PGK1 SELM PRKCG HK1 PELI2 RGS12 AGA ALCAM DPP6 CPNE2 MAOB SNX17 ID1 KCNK1 PCBP1 RAN EPS15 COL5A3 UBB RPL8 GUK1 CRIM1 MYL6 MAST3 DMTN EGR1 RHOB PHYHIPL RPL36A UBE2F CDH8 ADSS IRS4 CA11 GSKIP RRAGA RAB3IP PRDX1 DYNLT3 PDYN MBP CDC42SE2 PRIM1 GABPB1 ARPC5L RAB11A CLIP2 RPL38 DDN WBP2 RELL2 CCT5 ZNF365 QDPR NEFL RPS26 GSTT1 RPL23A TOMM7 EGFL7 RPL39 NGEF NDUFB5 MRPL20 RAB11FIP5 TMSB4XP4 KCNA1 TPD52 TBCB SEPW1 FAM84A RAB6A NFE2L1 EIF5A2 AP1S1 PPA1 NKIRAS1 TRIM37 PNMAL2 RSL24D1 C1D ATXN10 SEMA3A PDZRN4 VWA5A NDUFB3 DRAP1 HIGD1A WASL ZCCHC17 TMEM151A MRPL11 GPX4 CHRM2 DYNLL2 STX1B CD59 EID1 UQCRB PSMB5 NDUFB11 HCN2 NDUFC2 FARSA RASL11B WSB2 NDUFB2 GAP43 STK24 EPDR1 SAMD9 ATP6AP2 NBL1 PCSK1N GYG1 DCTPP1 RP11-173M1.5 SLC12A5 MANBAL NXPH4 PEG10 SEZ6L2 TMEM230 TMEM130 CALM3 SQLE GRIK3 PRELID1 MTATP6P1 SH3BGRL3 SPRN CTNNB1 NCDN CRIP2 IQSEC1 CADPS2 NDUFB8 NDUFB7 NEUROD2 FAM198B CABP7 MTRNR2L8 SLC9A1 FAM3C ARL4C MRPS21 PPP2R2B CDK14 GPR158 PTPRN2 UBE2QL1 CMPK1 PNMAL1 ISOC1 PINK1 TMEM155 C12ORF49 FKBP8 RPH3A PEF1 PTK2B SNX3 PAQR9 SIRPA NDUFA5 UBL5 C1ORF233 VEGFA NELL2 NAP1L5 PTCHD4 ATP5O RPL37A SLC39A10 ACTR1A FBXL15 CHMP4B CDHR1 KCNC2 UQCR10 BCAP31 CRYAB CDKN2AIPNL FAM174A SCOC APBB1 ISCU ASAP1 MYL12B NRAS USP5 NHP2L1 COX6A1 COX6B1 MT-ND3 RAB3A SNAPC5 TRMT112 H2AFZ MT-ND5 TMOD2 MRFAP1 SRP9 MGST3 DNAJC5 ATP6V1G2 ETFB ATP5F1 GABARAP RP11-219A15.1 ALDOA AC244489.1 RPS3A PCDHA9 PCDHA4 PCDHA10 PCDHAC1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MT-ND4 CHN1 SYT1 MT-ND3 NRGN SNAP25 CALM1 GPM6A MT-ATP6 MT-CYB CALM2 MT-ND2 MAP1B PRNP RTN1 TUBA1B MT-ND1 HSP90AB1 DIRAS2 SCN3B RGS4 STMN1 ATP1B1 RTN3 PPP3CA NPTX1 RTN4 IDS PNMA2 MAPK1 CALM3 TUBB2A CNTN1 MTRNR2L12 ACTB DPYSL2 THY1 EIF4A2 YWHAG MTRNR2L1 SV2B CLSTN1 DKK3 DCLK1 CLU TLE4 NDRG4 SERINC1 PREPL BASP1 SPARCL1 NFIA ATP2B2 ZFAND5 AK5 NAPB STXBP1 APLP1 NDFIP2 GRIN2A TMSB10 PRKACB PDP1 GABRA1 NPTN STMN2 PSD3 ATP2A2 SLC24A2 ACTG1 HSP90AA1 PKM TSPYL4 NRCAM APP NUAK1 SLC17A7 PPP2R1A FAIM2 IPCEF1 NDFIP1 RAB6B OXR1 MTPN ATP1A1 PSAP PRKCB KLC1 MTATP6P1 ITFG1 TMEM59L SEPW1 TMSB4X EGR1 SEZ6L CAMK2G DYNLL1 MTRNR2L8 PJA2 SLC9A6 SYT11 NELL2 SYN2 CADM2 YWHAZ TOMM20 ARL6IP1 TSPYL1 SERINC3 KIF1A YWHAB CAP2 SERPINI1 LMBRD2 FXYD6 NR4A2 CCK SLC1A2 ARPP19 CTGF GDI1 CYFIP2 VSNL1 ENC1 AP2M1 LMO3 ZNF385D MTRNR2L6 LPPR4 EIF1AX GAPDH CDK5R1 ITM2B PPIA TPI1 OCIAD1 PPP3CB WBSCR17 VAMP2 NAPA TSPAN7 SUMO2 PRKAR1A SPTBN1 ENO2 PRKCE MAP4 TBR1 APLP2 PPP2R2C NCEH1 UCHL1 TMEM155 RHBDD2 PGAM1 ATP6V0E2 LZTS1 SARAF TUBB MT-ND4L GRIN1 ATP1A3 CAPZB OPA1 KIFAP3 EFR3A NMNAT2 GNAQ SUMO3 NEGR1 PNMAL2 JUND SIRPA PGM2L1 CX3CL1 FSCN1 LANCL1 ASAP1 PLD3 LRP1B REEP2 SLC12A5 SYN1 SYNJ1 CAPZA2 ETV5 FTH1 PRKCG MPPED1 CAMK2D MARCKS PPP2CB SSBP3 FAM3C FXYD7 YWHAH OAZ1 ATP6AP2 MTCH1 TOLLIP DNAJC5 SCAMP5 RAB3A UBE2QL1 MIR6723 PPP3R1 RAB6A AP2B1 NAP1L2 RPL41 DNAJC6 RAB2A COX6A1 ATP5I GUCY1B3 GDA FGF12 PRKAR1B INA DYNLRB1 RAP1GAP2 FAM127A ADD2 CAMK2N2 UBE2V2 SLC8A2 CDK17 SEZ6L2 ARL6IP5 COX7C SNAP91 TRIM37 PTMA CTXN1 GAP43 B3GALT2 C14ORF2 RPS15 UQCRB AES PLCB1 MAST3 SCG2 C14ORF132 ETV1 ATP6V1B2 CLTC SLC22A17 PCDH17 SYT4 BNIP3 BRINP3 CPE PEBP1 NGFRAP1 RAPGEF5 NNAT TMEM130 TUBA1A ARF5 FTL BEX2 HMGCR KCNK1 COX4I1 SYTL2 RAB3B PCDHA10 VDAC1 ITM2C RPS28 MT-ND5 MSMO1 CDK14 NAP1L3 H2AFZ BEX1 REEP5 VDAC3 ATXN10 HSPA8 WASF1 OLA1 ANO3 KCNA2 PEA15 CLIP3 MORF4L2 CKB KLF10 CPLX2 SSTR2 ATP5B SEMA3A RNF11 CABP1 TGOLN2 C6ORF1 STX1B NXPH4 RPS3A EFHD2 SLC9A1 HMP19 RAP2A RAB11A ACOT7 RPL37A CTNND2 MAPRE2 MT3 STMN3 ALDOC KIF21A TPPP MYL6 NEFH FILIP1 PET100 SYNGR3 WARS ATP9A LMO4 SCN2B TCEAL2 SERPINE2 DYNLL2 CLSTN2 ADSS OPCML TSC22D1 CCDC85B CTBP1 VDAC2 NUDT4 MFSD6 SCD5 SYNPO C7ORF50 TUBB4A IDH3A TERF2IP DYNLT3 GUK1 DDAH1 EDNRA CHL1 PDE1A PTK2B ATP6V1G1 PCSK1 RASGRP1 MAL2 NREP SOD1 HPCA FKBP1A PFKP GNG3 NARS LYNX1 MAPK8IP2 FBXW11 TBC1D15 NSF RP11-20I23.1 ATP6V0C ARFGAP2 MRFAP1 RPL38 KRT17 SNN BSN BCL11B TMEM14A ELMO1 NIPA1 MAP2K4 SRP14 PFN1 MAP7D1 BAD SNRPN LAGE3 GRM3 NEFL OLFM1 NEUROD6 TSKU KLC2 IGSF21 BRK1 GABARAP ARL8B RPS10 DCTN1 SYNPR HNRNPH2 ATP1B2 CDS1 ARF1 EPB41L3 TCEB1 RP11-111M22.2 FASN RHEB RLIM ARL4D HPRT1 ISG15 NRN1 FIBP FAM174A CNP GPX4 IQSEC1 CYP26A1 HIGD1A GSKIP NAT8L GSK3A C20ORF24 REPS2 RBM20 IGFBP2 KLHL12 SPARC MGST3 SPRN ADORA1 TUBA4A NBL1 SLC39A10 SEZ6 PPP1CB ARPC4 CORO2B PTGES3 BHLHE40 PVRL1 TBCA CEND1 PPP2CA TBCB CACNG3 STX1A NDUFA1 CPLX3 AURKAIP1 GNB1 SUB1 FAM43B SNX17 FAM19A2 PFN2 MFN2 NRSN2 EPS15 VSTM2L UBE2D2 PHYHIPL NCALD DLC1 WASL KIF3C RPH3A TAGLN3 MBP NDRG3 CSDE1 ZBTB18 DACH1 ASAP2 DNAJB6 SPOCK1 SYT5 HOMER1 CACNB1 SLC7A1 CISD1 CFL1 ATP6V0D1 SLIT1 WBP2 LAMTOR5 ENSA BSG MAGED1 SH3BGRL3 NDUFB2 CREG2 ARHGAP35 C16ORF13 NECAB1 TENM1 ATP6AP1 PEG10 ELAVL2 MYEOV2 DNAJA1 ERH SNCA NAP1L5 CAPNS1 COPRS PTPRN2 KCNC2 ARSJ PPP2R2B BEX4 TMOD2 SRP9 CDK5R2 EID1 RASGRF1 GPR158 HK1 BTBD10 MLLT11 RAB1A SAP18 NUDT21 CHMP4B CCDC184 TMEM158 CLIP2 GABRA5 RPL35 EPDR1 LMBR1 ANXA7 CAB39 BSCL2 SLC7A8 RPL8 ARL2BP RAN ISCU UBE2E3 UBC PHYHIP PIP5K1B KIF5A CNTNAP5 KAL1 PCBP1 ADCYAP1 FKBP4 UTRN BIRC5 OR6D1P PCDHA4 AC244489.1 NGRN CFH TUBD1 CRISPLD2 OXCT1 PNKD CTSD ATP6V1E1 PIN1 SPRYD3 HSPB8 ANAPC11 NDUFB1 PTPRS CDC42SE2 NCOA4 SMYD2 ATP5F1 BMP2 USMG5 GLRA3 PSMA7 GSTA1 STK39 TMEM141 FAM134A ABCC12 TOMM7 CXXC4 GJD2 TUBB4B DDR2 DMTN GRINA MORF4L1 MZT1 TEX2 SEPT4 PITPNA ACTR1A RP11-195F19.5 DSTN STK24 UQCRH CPNE8 MAP2K1 BAALC PTPRN MTX3 RAB4A TPRG1L COX7B CYC1 KCNMB4 ANXA1 C19ORF70 GPCPD1 RASL11B DHCR24 SFTPD TCEAL3 LINGO1 ABHD8 FAM229A PSMB5 TKT LSM4 NDUFA8 SYT13 SLC25A4 CHCHD2 NRAS UQCR11 PSMD12 CRIM1 APBB1 KRT17P6 COPG1 LMO1 YAF2 PINK1 SERPINF1 IMMP1L ATRN MAOB RPS12 NDUFB7 RHOB CRTAC1 BLOC1S1 ARC TRAC MDH1 POSTN DYNC1I1 TRIB2 TXN MEDAG RPS19BP1 EPHB6 ITGB5 POMP RPL17-C18ORF32 TESPA1 KLHDC3 FAM198B DUSP1 TMEM65 CCDC124 C12ORF49 DNAJB9 KCNH5 RANBP1 TMEM117 LAMTOR1 MZT2B COX8A PGRMC1 UQCRC1 RAD23B UQCRC2 C19ORF53 ITPR2 FAM163B PDZRN4 NDUFB8 PCDH8 HDHD1 SNRPE RPL15 CRYAB CCNO UQCRQ DPP6 PGK1 UBQLN2 RASGRF2 STUB1 NDUFA13 PRPH2 GYG1 MAPRE3 PIK3R1 GRIK1 PPP2R4 FKBP8 AZIN1 KRAS NR4A1 AKAP12 HINT1 SPCS2 TMX4 CA11 PRUNE2 ALDOA COL24A1 KCNAB2 UBA1 C9ORF16 HBA1 EIF4G2 ZMAT2 CERS6 RXFP1 DNM3 VAT1L MAP1A STRAP SLC25A6 CDH24 NDUFV1 INPP5F CALN1 JAKMIP1 SRM GLO1 WBP11 SNCB RRM2B KCNF1 AP1S1 PROKR2 RPL17 SH3BGRL2 PHB NEFM CCND1 ASPDH SULT4A1 DUSP2 ANAPC13 MAP7D2 MDGA1 TPGS2 RPL36A SNAPC5 PMEPA1 ARF3 HBQ1 PRDX2 ZCCHC17 SGK223 RPL23A RPL7 PCSK5 RBX1 GRAMD3 NDUFS5 BCAP31 RPS2 NDUFAF2 CCDC25 FEZF2 DUSP6 MAP1LC3A MPC2 MRPL51 ZNF365 POLR2J EGR3 TENM3 SUCLA2 RAB40B HSPBP1 DOCK10 HES7 UBE2N FAM96B PCSK1N YWHAQ NCBP2-AS2 TM2D3 ELAVL4 RABAC1 DDN HS3ST4 DPP4 GHITM PPP1R9B TMEM35 EIF5A2 PRDX3 STMN4 SLC38A1 SLITRK1 TRABD2A COX5B MAGEH1 PPM1A ATPAF1 C1ORF52 BEX5 LRRC39 ROBO2 KLHL5 ATP5J ATP6V1G2 RAB3IP COX7A1 PSMD8 SH3GL2 TUSC2 SMAP2 KCNV1 SEMA3D RPL31 TRAPPC1 RPL13A PTPRM ATP5G3 PSMC1 OLFML2B GRIK3 PEX5L CDKN2AIPNL SCOC ARHGDIG STMND1 CAMK4 MTND1P23 OPRM1 ABHD14A RFK PCDHB2 CPNE2 MRPS21 BAI2 MARCKSL1 ACTR6 PSMC5 HTR2A ANKRD18A DRAP1 GREM2 SEMA3C COPS7A COX7A2L PTCHD4 RAB3C RPL3 SMIM13 CMPK1 ATP5A1 ATP6V1C1 VAPB NDN SNX3 VWC2L RIT2 OST4 TCEB2 NXPH3 C1QBP ATP5C1 RHOA CABYR COX6C GBE1 SKP1 TMA7 CMAS PITHD1 ACLY PEF1 TOMM34 ARL8A HS6ST3 SNX10 RAB5C TLN2 HSPE1 TNNT2 VPS35 HRH3 KITLG CFL2 ATP6V1F JUNB SLC7A5 LDOC1L GABRG1 ANXA6 RAB7A UHMK1 SKAP2 PECAM1 WSB2 HES1 RPL6 SERF2 RPL21 RP11-219A15.1 MIF PCDHGA6 PCDHGA5 PCDHGA10 TUBB3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 MT-CO3 SNAP25 MT-CO2 GPM6A SYT1 PRKCB CHN1 TSPAN7 PJA2 PEX5L DPYSL2 SPARCL1 CAP2 MT-ND3 DPP6 CALM2 CPE RTN3 ZNF385D SYTL2 MT-ATP6 GMFB GNAQ LDB2 SLC39A10 CALM3 MT-ND1 MTRNR2L12 NAP1L2 SEPW1 CALM1 MT-ND2 MTRNR2L1 NDFIP2 ARPP19 CNTN1 DNAJB6 NPTX1 ATP1B1 TF PREPL IPCEF1 EIF1 ATP6V1A PSD3 TMEM59L OLFM1 YWHAZ TMSB4X ROBO2 DMTN GDI1 SERINC1 PRNP PDCD5 BASP1 SARAF SLC24A2 TRMT112 ATP1A1 EPB41L3 SCOC NPTN SLC12A5 SCAMP5 PSAP MORF4L2 AP3S1 SLC17A7 TMEM130 SCN3B NELL2 EIF4A2 RPL39 PIK3R1 COX4I1 NAPB MT-ND5 EFHD2 ACP1 RPL15 COX7A2L RTN4 MAPK1 COL24A1 THY1 GRIN1 CAPZA2 ITM2B PPP1R9B STMN4 MYL6B SYNGR1 LMO3 PDP1 PRKCE PRKACB BEX1 PPP3CA MTRNR2L6 NR1I3 DIRAS2 PRPS1 MAST3 KCNK1 IQSEC1 ATP6V0E2 MGST3 CX3CL1 YWHAH RPL10A SLC1A2 ID2 GRIP2 RPL37A ARPC4 NUAK1 FIS1 CLU IFI6 ARL4C ARF5 PRDX3 PDE3A ALDOC FAIM2 FAM3C MEGF11 CADPS2 CMPK1 AES NECAB1 CLIP2 GAP43 SOD1 C12ORF57 FASN PELI3 NCALD KIAA1045 RPH3A C12ORF49 VDAC3 NAP1L3 PRKAR1A MORF4L1 ACTB PCSK1N PPP2R1A ADAM23 DYNC1I1 FKBP1A GRIK3 ZFAND5 NPTX2 RGS4 EFR3A TPGS2 CCDC124 CEND1 PPP2R4 KCNAB2 PSMC1 UCHL1 RPS12 YWHAB HTR2A PKM RPL38 CSDE1 MT-CYB EID1 MDH1 POLR2L BCL11B OR6D1P PPP3R1 GSKIP CAB39 RP11-111M22.2 NCDN DNAJA1 ACTG1 ITFG1 NRGN KCNH5 TENM3 CERS6 OPCML SCD5 CLSTN2 CAMKK2 IGSF21 PDE1A SPTBN1 YWHAQ SYNGR3 MRFAP1 CDK17 DYNLRB1 HS3ST2 PRKAR1B NDRG4 TMEM155 TUBA1B MFN2 GNB1 ETFB CA11 RAB2A DKK3 NGFRAP1 NEGR1 MTRNR2L8 FEZF2 PHYHIP SMS GDA FBXL16 SERINC3 COX6B1 COL5A2 SUB1 MMP24-AS1 RPL18A BIRC3 TPPP SNCB CTNND2 MBOAT7 HSP90AB1 ANXA6 FLOT2 SULT4A1 HINT1 CPLX2 VSTM2L TKT ENC1 ATP2B2 AP2S1 AP2M1 ALDH5A1 NDFIP1 VSNL1 MPC2 SYN1 HSP90AA1 PTK2B VDAC1 PFN2 PAFAH1B2 TGOLN2 TSPYL1 RPL36A CADM2 PEF1 ATP6V1G1 CHMP4B CLSTN1 MYL6 SSBP3 STXBP2 SYT11 CTNNB1 B3GNT1 WASF1 DYNLL1 TMSB10 RPS15 NUDT21 GDE1 PLCB1 SAP18 NMNAT2 MARCKS JUND RAB5C TMA7 RTN1 RRAGA BAALC APP PHYHIPL TMEM230 RPS6 ENO1 RPS28 FBXO2 RPRM NAPA MAP1LC3B PGRMC1 ATP6V0B PSMD12 HNRNPA1P40 EPHB6 NSF IDS C11ORF31 PTCHD4 NGRN ALDOA ATP6V1G2 MIF RPL13A RAB3B PCDHA10 PCDHA9 PCDHAC1 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 SNAP25 SYT1 TBC1D15 FTH1 DPYSL2 TMSB4X PRKCB SYTL2 BIRC5 SKP1 RTN1 CLU CALM1 PTPRN ATP1B1 STMN1 SPARCL1 SCN3B ATP6V0E2 GPM6A RTN4 MT-ND2 CALM3 ENC1 CALM2 CHN1 TMSB10 OR6D1P NR1I3 TUBD1 ATP1A3 FAIM2 CADM2 BEX2 CCK OLFM1 MT-CO1 CLTC OAZ1 CDC37 USMG5 CKB PRNP MAP1B SULT4A1 KIF21A SYT4 DCLK1 MGST3 UQCRB PPIA PREPL ATP5I SOD1 PGAM1 RPS15 KLC1 RPL35 TSC22D1 RTN3 SPTBN1 PFDN1 COX7A1 NAPB DIRAS1 ATP5J TMOD2 HSP90AA1 GNG3 MTCH1 SNRPN NDFIP2 OPRM1 C1ORF52 CAMKK2 MT-CO3 PLD3 CRIP2 AP2M1 SLC6A17 CAMK4 OPCML LINGO1 GSK3A HSP90AB1 HSPE1 NPTX1 VSNL1 KIAA1045 RPL31 TAGLN3 LYNX1 TKT NGEF DPP6 SYT11 MT3 BAI2 ATP2B2 COX7C HK1 VAMP2 ARF1 SCN1B RGS4 MYEOV2 UBE2QL1 NDUFB8 RPL37A HTR2A ATP5G3 STXBP1 TUBA1A ACTB PEBP1 PGRMC1 SPOCK2 RNF11 PPP3CA CREG2 UQCR11 PRKACB BRK1 PGM2L1 ZNF385D IDS ATP6V0C RP11-20I23.1 ARFGAP2 EPHB6 TUBB4A RAB40B NDFIP1 TRPT1 COX4I1 MSMO1 ARHGDIG SPRYD3 RELL2 BSG PKM FXYD6 CA11 MAGED2 TCEAL5 ATP6V0B CPLX1 SH3BGRL3 SEPT4 TMEM59L NEUROD6 SUMO1 FAM127A YWHAZ SELT NAT8L PINK1 PRDX3 LRRC53 DHCR24 AURKAIP1 CMAS NDRG4 ATP5O ALDOC MYOM2 DCTN3 STMN4 PRUNE2 PSMA7 RPL38 CA10 SUMO2 ADD2 YAF2 RPS28 SPCS2 RFK PPP2R4 LMO4 H2AFZ TPPP GABRA1 STMN2 ATP10A EPB41L3 FKBP4 PANX1 SLC25A4 NGFRAP1 NCAM2 MORF4L2 RPL21 NEGR1 NFIA SLC39A10 ATP1A1 CCDC61 SLC25A6 RHBDD2 NECAB1 ZNF208 TPI1 RTN4R PPP1CB CHGB LGALS1 ANGPT2 BCKDK C9ORF16 EPDR1 RAB11FIP5 LANCL1 GDE1 UCHL1 NDUFB11 RHEB DPY19L1 MAST3 CISD1 TPGS2 COX17 AZIN1 CLSTN2 AHNAK2 NCDN UBA1 IPCEF1 CADM3 UQCR10 GMFB SLC30A3 TMEM132D GRIN2A BASP1 PPDPF SST CERS6 CDK5R1 INSIG1 PRKAR1B LMBRD2 DNAJC6 SLC25A11 PFN2 RPL15 TCEA2 MAP1LC3A GAP43 FTL PDE1A STX1A PSMC1 ID2 TCEB2 TMEM200C WDR47 CAP2 OAT SLC17A7 PDP1 ATP6V1B2 HPCA ZFAND5 RASGRF1 MAP2K1 WASF1 RAB3C ARPP19 ISCU TMX4 IQSEC1 LMO3 PSAP PSMC3 OPN3 RPL19P18 DGKG RPL13A PEX5L LINC01296 ATXN10 MAP2K4 GPCPD1 NRGN PIN1 AKAP12 AGGF1P3 VDAC1 CPLX2 PPP2R2C RP11-195F19.5 NDUFB3 ROBO2 TCEAL2 PHYHIP PTMA TMEM179B FKBP1B PPP3CB RPL39 MYL6 KIFAP3 NUAK1 ARL6IP1 PIK3R1 ENSA CAMK2G CDK5 TMEM120A ENG GHITM ARHGAP35 ETFB SLC35B1 DNM3 B3GALT2 BHLHE40 COL24A1 GDA ATP6AP1 GRIN1 UBE2N TOMM70A NPTX2 NDUFA13 CLPTM1 DCTN1 AK5 FSCN1 CAMK2D NIPA1 MKX CCDC184 TUSC2 PTGDS YWHAH PDCD5 ACOT7 ATP6AP2 RPL41 PSD3 BTNL9 CHL1 C16ORF13 JUND MT-ND4 CABP1 APLP1 YWHAB TENM3 SRP14 ETS2 VAPB FGF12 SYT13 BSN DKK3 ARL6IP5 LDB2 RASGRP1 TMEM130 CLSTN1 KCNA1 CDKN2D CBLN4 APP JAKMIP1 TMA7 NREP EIF4A2 UQCRQ ATP5E GABRA5 CTXN1 C12ORF49 SMAP2 OXR1 STK24 C11ORF31 MAP4 SV2B CAPZA2 NOP10 SEMA3A SSTR2 EIF4G2 SEPW1 NDUFA5 YJEFN3 MTPN SCN1A MFN2 VDAC3 DNAJC5 ATP6V1A FAM96B THY1 TOMM7 RAB6A ATP9A SNN UQCRC2 CNRIP1 GUCY1B3 STK39 ELAVL2 RAPGEF5 SH2D1B COX6C GDI1 TOMM20 SERINC1 RPS12 MT-CO2 EFR3A RGS12 DYNLRB1 REEP5 SCAMP5 RAB6B TUBB2A UROS GTF2H2C_2 RPL13 RNASEK-C17ORF49 ALDOA ARF5 BSCL2 RPL6 MIF RP11-219A15.1 RPS26 PCDHA10 PCDHA4 PCDHAC1 PCDHA9 CCDC69\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 SNAP25 MT-CO2 MT-ND4 RP11-111M22.2 CLU ENC1 SPTBN1 PRKCB BIRC5 MAP1B NPTX1 PIK3R1 MT-CO1 TBC1D15 CHN1 EIF4A2 SYT1 MT-CO3 INPP5F GAPDH CALM1 CALM2 SPARCL1 TOMM20 MT-ND1 BEX1 MT-CYB CALM3 RP11-219A15.1 TF RTN1 DKK3 NECAB1 GPM6A MT-ND3 RPS15 NUAK1 NPTN NRGN ATP1B1 NDRG3 APP LMBRD2 MTRNR2L1 RTN4 PEBP1 NDRG4 YWHAH MT-ND2 SYT11 NRCAM MT-ATP6 SSBP3 KLC1 APLP2 AP1S1 FKBP1A RPL17 FBXL16 OXCT1 SARAF TMSB10 MAPRE2 ATP2A2 SERPINE2 VAMP2 OPA1 OPCML DYNLRB1 SPOCK2 GPR98 MAP4 SYN2 SRP14 NFIA CYFIP2 TSPAN7 AK5 ZBTB18 NEFL TUBB4A CREG2 PAK1 CHCHD2 SLC17A7 PDE1A SLC35B1 DCLK1 ATP6V1B2 COL6A1 DPYSL2 SUMO2 ENO2 SLC38A11 PRKCE FTH1 PFKP RAB6A MORF4L2 STMN4 GNG2 SNAP91 CDC37 CNTNAP3 MTCH1 TMSB4X ATP1A1 UQCRH SERINC1 PSD3 MORF4L1 RAB3B OR6D1P TUBD1 PGK1 MARCKS RPL3 C14ORF2 RABAC1 MTRNR2L6 ATP6AP1 CPLX2 EIF1 COX6B1 CDK14 HINT1 SLC24A2 GDA SLC7A1 KCNK1 ZMAT2 MAGED1 CDK5R1 FNDC4 ADAM23 ANKRD20A11P COX6A1 HK1 SCN1B CHMP5 NDUFB8 PRKCG SULT4A1 KCNMB4 PNMAL2 PKM HSPA8 AES SV2B MMD PGM2L1 GUCY1A3 NDUFS5 CAMK2G HOPX USMG5 NDUFA12 GOT2 MTRNR2L12 ACTG1 DCTN1 PARP14 SLC38A1 GPR68 TUBA1A FABP5 PSMC5 GRM3 OCIAD1 YBX3 PPP3CA OPRM1 EHD3 REPS2 NKIRAS1 CHL1 FGF12 EIF4G2 NAPB EPHA6 GNB1 PTPRN SYNGR1 PCDHGA5 TMTC1 ATP1A3 AP3S1 CPE SLCO4A1 UQCR11 ATP5I NPTXR YWHAG PRKACB CADPS2 KIF3C RNA5-8SP6 BTBD10 COX7A2 MTX3 APBB1 NGFRAP1 MT-ND4L QKI PHPT1 GAP43 MT-ND5 RAP1GDS1 DNAJA1 RELN PPP1CB CCDC74A PEA15 HSPE1 RAPGEF5 PPARGC1A IDS UBA52 CABP1 CNTN1 PJA2 SSTR2 TSPYL1 EPB41L3 STXBP1 RSPO3 TLE4 CFL1 SPOCK1 CDK17 CIAPIN1 MLF2 RPL13A TAGLN3 C1ORF52 EGFL7 C1ORF115 LL0XNC01-16G2.1 KCNA1 PDP1 VPS35 SCN1A MAL2 DDAH1 SHARPIN YWHAZ TIMP1 HOMER1 SNCA ELAVL2 DPP6 RPS3A RHBDD2 OLFM1 THY1 SYT5 LPAR2 STMN1 RAB31 RGS12 ZNF208 SEPP1 ARPC5L NAPA DNAJB6 ELAVL4 MAPK8IP2 ATP2B2 PTN BAG4 SYN1 INA IGSF21 LRP1B MDH2 PRNP ID2 SCOC LAMTOR5 GPR37 LIMK1 PPP2R1A NDUFA8 TRPV2 TUBA1B C1ORF233 NAT8L RPS28 DUSP2 CCK SKP1 RPL31 NELL2 ATP5J2 HNRNPH2 CX3CL1 PTK2B PTGES3 RPS2 PLCB1 SNX17 ALDOC TMEM155 ISCA1 PPIA UQCRB CEND1 STMN2 TCEB1 DMTN GRIN2A KLHDC3 DAB2 TLN2 ITM2B AP2M1 MFN2 KIF1A RNF11 ETS2 CLTB WBP2 COX7C ZBTB20 NAP1L3 DIRAS2 BAI2 TMOD2 CTC-575D19.1 RPL41 ALDOA LDHB RPS26 AC244489.1 CAPZA2 TUBB CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 CHN1 MTRNR2L1 MT-ND2 MT-ND3 CALM1 SNAP25 ATP9A PRKCB TMX4 MT-ND4 GRIN1 SPARCL1 MORF4L1 RTN3 MT-ND1 NFIA NAT8L PRNP SERINC1 ELAVL4 ELMO1 SYNJ1 SARAF NIPA1 MMD COX7B CAP2 LMO4 PLCB1 STMN4 PPP3CA HSP90AA1 AP2M1 CACNG3 OST4 ABHD8 RAP1GAP2 MAP1B NDRG3 CAMK2D SLC24A2 ANO3 SPRYD3 SYT4 KCNF1 HRH3 CHMP5 MTRNR2L12 ARF3 ENC1 MT-ATP6 DPYSL2 ENO2 NDUFB1 SNX3 RASL11B RNF212 RPL8 KCNH5 RP11-111M22.2 ATP2B2 USP5 FASN PCDHA4 NRCAM MBP PTK2B CPNE8 HNRNPA1P40 VDAC1 MGST3 CLU RAPGEF5 ITFG1 RPS5 CERS6 NAP1L3 KRAS ACTG1 DNAJC6 LMBRD2 NECAB1 BIRC5 SV2B CALM2 TSPYL1 SLC8A2 BEX2 FTL AES MTRNR2L6 NDUFB7 ATP1A1 FILIP1L CRKL GALNT12 STMN2 GRIN2A ALCAM MAP7D2 HMGCR RBM20 DCLK1 LMO3 MT-ND5 TBC1D15 RAB3B VSNL1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 STXBP1 MT-CO3 NR1I3 OR6D1P NDRG4 MT-CO1 NPTX1 ATP2B2 SYT13 ZNF385D MAPK1 ACTB MT-CO2 RAP2A AC244489.1 CABP1 GPM6A SYT1 PIK3R1 CHN1 YWHAG VAMP2 CD63 MMD STX1A NELL1 RTN3 YWHAB GHITM LMO4 HSP90AA1 BASP1 BRICD5 PCDHA4 ANKRD18A MAST3 EPB41L3 SULT4A1 ARMC3 NRGN SLC7A8 PIN1 LINC01296 SLC1A2 CKB C11ORF31 OAZ1 CCK RP11-111M22.2 RPL37A RPS15 COX4I1 PJA2 TSHZ2 RPL31 PPP3CA SLC6A17 RAB3B HNRNPA1P40 CFH ARFGAP2 QKI NDUFS6 FTH1 NRCAM ENO2 PPP2R2B PEX5L GRIN1 KIF5A PVRL1 BEX2 NDFIP1 PRKACB COL24A1 RNF11 SLC24A2 WASF1 COL25A1 RPS28 SPOCK2 LDB2 ACAT2 ELAVL4 PRUNE2 BEX1 CAMK2N2 NPTXR LRRC39 ISCA1 MTATP6P1 ATP6V1B2 BLOC1S1 MLF2 DGAT2 ACOT7 CACNB1 ETS2 MARCKS NECAB1 TUBB4B HCN1 RGS4 TNNT2 PEA15 TUBA1B ZNF319 MAP1B PGAM1 TGOLN2 RELN PRKCB EPDR1 LAGE3 SPARCL1 CERS6 CALM1 PRKAR1B KLHDC3 PRNP RAB3C FAIM2 CD9 CYCS NUDT4 MCMDC2 NFIA H2AFZ STAG3 SERP2 FAM84A TPI1 CA11 RP11-195F19.5 PGRMC1 ENG KRT17 MYEOV2 ACTG1 DCLK1 C16ORF93 SLC39A10 CISD1 SLC25A53 SIRPA TCEA2 NBL1 LPPR4 RPL12 KCNMB4 GLDN HSPA4 MAL2 TESPA1 PFN2 ARF1 OXR1 TAGLN3 SYT5 KLC1 STMN1 SCN3B NELL2 TOMM20 RP11-697E2.12 LGI3 ATP5G3 CHIT1 RTN1 RTN4 SCOC RPL35 AP3S1 TUBD1 SSBP3 GABARAPL1 TOX2 NDUFA5 KIF1A THY1 SRD5A1 GAPDH SERINC1 EIF4A2 CACNA1H RPL10A PTMA SCAMP5 MAP1LC3A RAP1GAP2 COX5B SUMO3 SNCA RESP18 COL5A3 STMN3 BCKDK CADPS2 HINT1 KCNA5 CADM2 IDH3A SLC9A6 SEZ6L OTOA FLOT2 HMP19 EFHD2 HDLBP TUBB2A TMEM155 SLC22A17 MT-ATP6 CSDE1 GSTT1 CYP27A1 SELT CDH7 JUN TMEM150C TLE4 CPLX2 WSB2 KRT17P6 TMEM130 MT-CYB SKP1 CTNNA2 UQCRC1 MYRIP LMO3 HSP90AB1 NGEF UCHL1 PET100 PGM2L1 RPL41 RP11-20I23.1 ATP6V0C ARF5 ATP6V1G2 BIRC5 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 RAB3B CALM2 MT-CO1 SNAP25 BIRC5 NR1I3 RTN1 DPYSL2 RP11-111M22.2 SLC39A10 CCK MT-ND4 ENC1 PRKCB ZNF385D SEPW1 FTH1 TMSB4X TUBD1 VAMP2 STXBP1 ARL6IP1 DCLK1 CREG2 THY1 HNRNPA1P40 PKM CALM1 NECAB1 BEX2 LANCL1 IPCEF1 MTRNR2L1 ISCU CHN1 PPIA CDK14 RTN3 SYNGR1 ARPP19 DYNLL1 SNCA REPS2 SCN4B BSG BASP1 STX1A TSHZ2 EIF1 FKBP1A YWHAH RPL13A ATP1A3 MT-CO3 FAM163B NDUFA13 CALM3 RPL32 GABARAPL1 MT-CO2 NUAK1 ATP6V0E2 SERF2 RGS4 GPM6A NAPB SCN1A MAP1B SPOCK2 TOMM20 RPL31 S100A6 SPARCL1 OR6D1P TUBA1B VSNL1 BSN CEND1 RPS26 RPS10 UQCRH CABP1 LINC01296 CDK5R1 HSP90AA1 HSP90AB1 KLHDC3 CNR1 MT-CYB ATP5G3 NGRN CA11 PLS3 PET100 PEA15 NDUFB2 ANKRD26P3 PTPRS DMTN MYEOV2 PGAM1 SERPINI1 EPS15 FXYD7 RXFP1 UBB CD63 PEBP1 NGFRAP1 KLC1 YWHAG RPL7 LMO4 DPY19L1 KLHL5 BDNF POLR2L PPP1R7 DIRAS2 ETS2 GAP43 PIK3R1 MT-ND2 CYCS NDUFA4 UCHL1 PTMA ITM2B CNRIP1 ATP6V0B ELAVL2 COX4I1 GABARAPL2 KRT17P6 UQCR11 TMSB10 OAZ1 FAIM2 YWHAB TSC22D1 UBC CTNNA2 RPL17-C18ORF32 ATG101 FXYD6 NREP RABAC1 TMEM14A DHCR24 ARL6IP5 UQCRQ PPP2R2B SCAMP5 STMN1 DNM3 PRKACB HOMER1 OXCT1 PLCB1 NRCAM PDZRN4 SCN3B LMO3 PEX5L KIF5A ENO1 GUCY1B3 RPS15 OCIAD1 NEFL RTN4 GHITM YAF2 SLC17A7 NPTXR PDP1 CLU NRGN UHMK1 RPL41 APLP2 SARAF PNMA1 BAI2 NFIA RAB3A UROD CFH PCDHA4 EIF1AX NFE2L1 TUBA4A PEX11G GRIN2A POLR2M SSTR2 KMO BAG4 ESYT1 PHYHIPL WASF1 CSDE1 IDI1 PRUNE2 COX8A AP3S1 KCNH5 RP11-133L19.3 ADD2 COX7A1 SKP1 LAMTOR5 PLD3 SEC61G RP11-20I23.1 CLTC ATP5O CLEC2L KCNA2 TMX4 COMMD6 ATP5G2 CKB RBX1 SNAP91 COX6C CCDC115 ELMO1 CTNND2 MORF4L1 GUK1 MCMDC2 PAFAH1B2 NDUFA1 ARL2BP NWD2 PTPRT FRMPD2 UQCRC1 KCNC3 NDUFB7 NPTX2 CDCA8 RPS27A NDUFC1 ARHGDIG RPL15 PITPNA NDUFA5 NHP2 NAA38 FASN PI4KA KIF1A B3GALT2 SLC7A5 ACOT7 FIS1 LL0XNC01-16G2.1 FAM127A PPM1A MAP2K2 ZCCHC17 APLP1 MTRNR2L6 CD59 STMN2 RAB3C PRNP STMN3 PSD3 MTRNR2L8 DUSP6 SNRPN FNDC4 RPS28 TMEM59L ATP5J2 MORF4L2 UBA52 ACTB MKX TUBB4A HAPLN4 C16ORF93 LYNX1 ATP6AP2 UBL5 TSPYL4 RLIM SLC24A2 FAM131B BCAT1 NDUFB8 MYL6 CNTN6 C12ORF57 RPL6 PSAP CAP2 EPB41L3 BLOC1S1 C1ORF115 TGOLN2 MPC2 DIRAS1 OLFM1 TM2D3 NMNAT2 PAM SELT MAP2K4 PRKAR1A CPLX1 MAPRE2 ATP1A1 PSMC3 FAM198B PTPRN KIF3C SYT13 PSMC5 NDRG4 SCG2 SCN1B EXTL2 DUSP4 ENO2 EGR1 JUND NAP1L2 TM6SF1 DNAJB9 OPRK1 MIR6723 RPL39 SLC38A1 FKBP8 DKK3 COX14 PREPL FBXL15 RHEB RASGRF1 PACSIN1 EIF1B TUBB2A GRM3 EFHD2 TMEM141 ATP6V1C1 ATPAF1 ANXA4 AHNAK2 PPP3CB MLF2 HMGCR QDPR C1ORF52 NBL1 TEX40 RPL3 PFDN4 AES DNER IDS TSPYL1 GABRA5 DYNLL2 TSPAN33 TPT1 MED10 ARL8A MRAS ATP6V1B2 PPP2CB MAPRE3 UQCRB MT-ATP6 OXR1 COL5A2 CAB39 THOC7 ENSA ARHGAP35 VCAN DGKG SUMO2 HTR1F SERPINE2 EIF4A2 HNRNPH2 ATP6V1G2 SYT6 VDAC2 CADM2 KIF21A TXN FAM219A SYN1 PPP2R2C NPTN GPCPD1 RAB5C GPX4 PHYHIP NDUFV1 GOT1 COPE TPRG1L UQCRFS1 EFR3A NHP2L1 CFL1 PFN2 SV2B MTRNR2L12 NDFIP2 SNCG ATP6V0C MT2A COL10A1 CYFIP2 NAPA TCEB2 CAPNS1 KCNMB4 SAP18 ARC MYRIP ALDOA CYP26B1 RHBDD2 HSPE1 ISOC1 C14ORF2 VIP HSPA8 SLC12A5 AC244489.1 OPCML ATP6V1A CRH C19ORF70 CBLN4 PRKAR1B HMGCS1 SEZ6L2 AK5 NRN1 PSMD8 DDAH1 FBXO2 GMFB FTL DAB2 UQCRC2 MAP7D2 CISD1 TUBA1A LAP3 GABRA1 NRSN2 MLLT11 TOMM7 ATP6V1E1 CFL2 C9ORF16 CHMP4B SPCS2 PPDPF NME1 RASL11B SNRNP25 PGM2L1 BCL6 MTG1 DGUOK NSF RPL35 SLC30A3 HTR2A MTCH1 RPS4X EGR3 YWHAZ NAT8L RPL21 NUDT4 CERS6 C3ORF80 RANBP1 NPTX1 CLSTN2 ADAM23 SEPT4 SLC9A6 SNCAIP SH3BGRL3 NGEF CDC42SE2 TLE4 FAM149B1 PNKD TCEB1 VDAC1 STX1B LRP1B PJA2 NDFIP1 SSBP3 SPDL1 BNIP3 COX6B1 ATP1B1 APP TSPYL5 USMG5 VPS35 OAT TMEM130 PSMB3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RPL41 RPL31 RP11-111M22.2 SNAP25 RPL38 RPL35 CHN1 RPS27A RPL37A RPL13A RPL32 RPL26 SYTL2 RPS6 RPS15 RTN3 OR6D1P PPP3CA RPL3 GAP43 ELAVL4 UQCRB COX7C ATP5G2 C9ORF16 UCHL1 RPS12 NR1I3 BIRC5 RPL10A RPL8 SYT1 RPL15 NAPB RPL11 FTH1 ZNF385D MLLT11 FGF12 MT-CO1 RTN4 RPL23A VSNL1 VAMP2 RPL21 FTL CALM2 TMA7 ETFB ENC1 PKM SEPW1 RPL7 PI4KA RTN1 CALM3 TOMM7 COX6C TUBD1 WSB2 RPL39 NDRG4 APLP2 GOT2 ATP5G3 LMBRD2 DMTN NDUFB2 ATP1A1 TPI1 CREG2 PJA2 ATP6V0E2 NGFRAP1 RPL36A SH3GL2 GAPDH SSTR2 STMN2 ATP2A2 SLC12A5 NECAB1 ELAVL2 TUBA4A BCL11B NUAK1 MAP1B SCN1A COX6B1 YWHAB GPM6A CLSTN1 MDH1 NEFM AES CABP1 TMSB10 QDPR MRPL20 ATP5O VEGFA RPS28 ITFG1 ATP6V1B2 TNNT2 CLTC MLF2 TUBA1A NDUFB8 CPLX2 C14ORF2 COL6A1 PPP1R7 TCEB2 THY1 MRPS7 MT-CO3 PIK3R1 BAI2 SCN4B VPS35 NDUFB1 CCK ITPR2 NRGN CLU GABARAPL1 SERINC1 SARAF PRKACB RPL13 ANO3 ISCU TPT1 RPL6 STMN4 CALM1 USMG5 STXBP1 COX6A1 IQSEC1 NME1 STMN1 EIF1 GRIN2A CAPZB MT-CO2 RPL18A RPS5 RPS4X PHYHIP CFH RPL17-C18ORF32 RPL17 CFL1 ANAPC11 HDDC2 COA4 NDUFB10 RPS10 NDUFA5 SYT2 PGAM1 GPR98 YWHAZ PSMC3 OPA1 PCSK1N ATP2B4 CNTNAP5 KRAS SAP18 STX1A MBP RGS4 PCDHGA5 GSTP1 GHITM GADD45GIP1 CA10 NRCAM COL5A2 ABHD14A HEY1 PFKP FER1L4 EIF1B ARF5 NKIRAS1 ATP5I PDE1A PODXL EIF4G2 AURKAIP1 RPL12 GSK3A CAP2 ATP2C2 CLDND1 GUK1 DSTN PPIA MT-ND5 PGK1 RAB2A SERF2 SNCG ALDOC CBX6 SLC7A1 CTNNA2 NPTX2 MAST3 RHBDD2 CX3CL1 PRKCE ASNA1 RAB40B GNG3 MAL2 ADAM23 LANCL1 ITM2B TUBA1B THOC7 NAA38 UBE2M SYT11 POLR2I CITED2 PAK1 NUDT4 LGI3 MMP24-AS1 DNAJB6 UBL5 RABAC1 CNTN1 NDUFB7 PSMC5 C16ORF13 WDR47 ATP11C DPP6 MAP2K1 MTRNR2L1 HSPA8 CAB39 NAP1L5 SRP14 SLC25A6 ARHGAP35 DBNDD1 CAMK2G SNCA DPYSL2 INPP5F FXYD7 BSN CHL1 GUCY1B3 UQCRH FAT3 PGM2L1 FABP5 ATP5A1 FAM84A PARM1 CKB ATP5J LRRC69 PTPRN2 NDUFA12 NDUFA4 WBP2 DYNC1I1 IDS HS6ST3 PTCHD4 MAP1LC3A PRDX5 NREP CHP1 EID1 RBX1 DYNLL2 PLD3 CTNNA3 PTK2B COX8A EIF4A2 AP2M1 ARF3 CCDC124 UQCR11 ISCA1 BEX5 NDUFA13 NCALD DHCR24 CMPK1 BAALC SLC24A2 OCIAD1 S100A6 SMAP2 C11ORF31 GMFB ZCCHC17 HSP90AB1 CDK5R1 MAP2K2 COL24A1 MT-ATP6 DDAH1 GSKIP OPCML TSC22D1 RAB3IP NHP2 SLIT3 C1ORF233 PCMT1 OAZ1 TMSB4X PRNP MORF4L1 NTHL1 PREPL NEGR1 TSPAN7 CYCS DYNLL1 PFN2 PIP4K2A CORO2B COX7A2 KLC1 EPB41L3 TXNDC17 OLFM1 NDUFA8 WBSCR17 ATP1A3 TCEA2 SKP1 NCOA4 DCC NAT8L UBA52 MAP1LC3B DIRAS1 SH3BGRL3 FBXO2 NDUFS6 GPR26 EDF1 TBCA NPTN CHGB SPTBN1 RPS3A GPR37 UQCR10 GABRA1 KCNK1 SGCD HSP90AA1 HMGCR ANGPT2 AK5 PEA15 MT-ND2 CAMK2D GRINA AZIN1 PRKCB YWHAQ SYT5 SEZ6L2 PVRL1 LAMTOR1 CHMP4B EGR1 MGST3 CACNB1 APP KIF25 NEFL SIRPA MT3 BSCL2 DPY30 MTRNR2L8 MRFAP1 PSD3 TENM3 PPP1CB YWHAH HK1 MRPL51 COQ10B PPARGC1A MTRNR2L12 GNB1 ABCC12 ATP6V1E1 LRRIQ1 EGFL7 KIF3C APLP1 CDC37 MAPRE3 MFSD6 TMEM200B EIF1AX RAB3A TESPA1 COX14 ALDOA RP11-219A15.1 RNASEK-C17ORF49 MTRNR2L6 NSF RP11-20I23.1 NGRN ATP6V0C GABARAP CDC42SE2 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 SNAP25 SYT1 MT-ND4 MT-CO1 MT-ND1 SLC9A6 MT-ATP6 PREPL CHN1 RTN4 CLSTN2 UQCRB NFIA TUBA1B MT-CYB PET100 ATP5B MTRNR2L1 MT-CO2 PTMA PEBP1 RPL38 TMSB4X MT-ND5 NGFRAP1 MT-ND3 ARL6IP1 ATP1B1 ZNF385D DNAJC21 TBC1D15 RAB3B SYTL2 PSMB5 FABP6 CAPZA2 ATP2B2 DYNLL2 PKM COX7A1 SYNJ1 PSMA7 MTRNR2L6 VDAC3 CAMK2D SPHKAP COX6C BNIP3 TSPAN7 MPPED1 PEX5L SPARCL1 RAP2A SLC38A11 PKD2L1 PGM2L1 ATP6V1A DDAH1 KIF5A YWHAZ PCDHA9 GPM6A SARAF STMN1 CLEC2L MAPK1 TLE4 NRGN CHL1 CLDND1 RAB1A APBB1 GPX4 CERS6 PCP4 CDK5R2 DCLK1 SNCA MT-ND4L NXPH2 ENO2 SLC24A2 CDH7 C6ORF1 CPE LUZP2 USMG5 MT-CO3 PPP3CB PJA2 RP11-195F19.5 C19ORF43 PCSK1 PDZD11 TMEM59L MTRNR2L12 FOXP2 TBR1 OAT KLHL12 NDRG4 RTN3 CABP1 UCHL1 PNMAL1 ANKRD18A RPS2 GRIN2A NDUFB1 RPS28 AK5 RP11-111M22.2 GDI1 KCNH5 RAP1GAP2 RPL13A PPP3CA CADM2 HS3ST4 BCL11B CCDC85B DDR2 PDZRN4 SPTBN1 DYNC1I1 STX1A MPC2 PIK3R1 SERINC1 PDE1C SYT11 DKK3 CALM1 GSTT1 GABARAPL2 MAP1B ARFGAP2 SERF2 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND3 SYT1 NPTX1 BIRC5 MT-CO3 RAB3B SYTL2 MTRNR2L1 CAMK2G MTRNR2L12 CLU CHN1 CALM1 RP11-111M22.2 ATP1A1 SNAP25 MT-CO2 TOMM20 PRNP MT-CO1 IPCEF1 SPARCL1 NEFM NECAB1 NRIP3 KIF1A LMO4 MAP2K4 PRKCB ATP2B2 DNAJB6 TUBA1B RPS15 PEBP1 ATP1B1 ENC1 PPDPF STMN4 CPE TMX4 MT1X SLC22A17 SLC38A1 PSAP TMEM130 ARF1 APP SERINC1 ITM2B ADORA1 MT-ND1 GUCY1B3 PEG10 MTCH1 PJA2 NFIA PEX5L MAP1B SMOC1 EIF1 UQCRC1 PNMA2 PRDM8 GUK1 NDUFA13 LRP1B GDI1 C1ORF115 COL11A1 KLHDC3 ZNF365 CNTROB SYT4 PGK1 LIG1 CKB RPL31 WFS1 DPYSL2 BSG OXR1 RCAN2 OLFM1 CNTN1 CDK17 TUBD1 BASP1 NRGN VSNL1 ITM2C OAZ1 ELAVL4 UBB HCN1 ATP6V0B BTBD1 COX4I1 EPHB6 OR6D1P CLPTM1 MAPK1 GPR158 PRUNE2 HSP90AA1 CHGB LAMA4 SERINC3 VAMP2 SH3BGRL2 EPS15 SLIT1 WASL NGFRAP1 RPL10A PRKAR1B STK39 RAB6B MAPRE3 SDK2 DNAJA1 LYSMD2 RPL15 ANO3 DGUOK DCTN1 CLSTN1 PCBP1 CAPZA2 NCEH1 CHMP4B CTBP1 RBX1 CTNNB1 AP2S1 YJEFN3 TMEM59L NR1I3 DIRAS2 OPN3 SOX6 CMAS NDFIP1 PCP4 MTRNR2L8 CAB39 YWHAG CYP26A1 INA ARHGAP6 RTN1 CRYAB VPS35 MORN2 EIF4G2 MORF4L1 HMP19 PPIA TOMM7 CA11 KRAS SEMA5A ACTB GRM3 RTN4 FKBP8 PCDH15 ATP1A3 CTSD RPRM SYN1 UHMK1 SULT4A1 AES GDA GABRA1 NDUFS5 TESPA1 FXYD7 AP2M1 PKM RPL8 HFM1 CPNE8 MAP7D2 CDK5R1 APLP2 PVRL1 FARSA KIFAP3 DKK3 SLC24A2 SCN3B C1QBP ENOPH1 CYFIP2 GLUL COQ10B PDP1 GOT2 CCT5 HK1 HOMER1 GPM6A SCD5 EIF4A2 DYNLL1 DNAJC5 PI4KA COL24A1 GRIN2A MTRNR2L6 ALDOA SERF2 RPL13A MTND2P28 MT-ND2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SNAP25 SYT1 MT-ND4 MAP1B MT-CO1 MT-CO2 CALM1 GPM6A ENC1 TMSB4X CHN1 MT-ND2 SYTL2 ATP1B1 TMSB10 CALM2 DIRAS2 TSPAN7 RAB3B SPARCL1 LMO3 APP TUBA1B GAPDH FXYD6 MT-ND1 PPP3CA NRGN PRNP CNTN1 FTH1 MTRNR2L1 CADM2 STMN1 RTN3 YWHAG SLC1A2 RTN1 GDA HSP90AA1 SLC17A7 MT-CYB YWHAH NGFRAP1 PTMA RNF11 STMN2 ITM2B GAP43 SNAP91 VAMP2 HSP90AB1 C14ORF2 SV2B OAZ1 ACTG1 ZNF385D UCHL1 MTRNR2L12 PEBP1 TUBB2A CPE ARF3 COX5B NAPB ACTB TLE4 PRKCB SEZ6L2 NDFIP1 YWHAB SNCA CAMK2D DYNLL1 MT-ND3 ATP5I PGM2L1 CLU FTL FXYD7 PSAP SERPINI1 STXBP1 CFL1 IDS PRKACB CLSTN1 THY1 COX6B1 ENO2 PREPL ATP6V1A OXR1 EDIL3 RPL15 ATP2B2 SARAF SPOCK2 ATP1A3 PSD3 PJA2 RPL31 CALM3 FAIM2 LPPR4 RTN4 DCLK1 HMGCR PPIA SEPW1 AK5 SEMA3A ATP5E KLC1 GDI1 NDRG4 B3GALT2 SH3GL2 EIF4A2 UBE2QL1 GABARAP DKK3 SERINC1 VSNL1 RPS28 PGRMC1 NELL2 TSPYL1 SIRPA EIF1 RPS15 SOD1 ALDOA TBC1D15 RP11-111M22.2 RPL41 PIK3R1 HMP19 AP2M1 CKB FBXL16 KIF21A CTNND2 SYN2 CHL1 DPYSL2 RAB3A PLD3 SYNJ1 LRP1B TMEM130 SYNGR1 TMEM14A BASP1 OLFM1 PPP3CB ARL6IP1 MT-ATP6 TOMM20 YWHAZ TUBB4B SNRPN NR1I3 ELAVL4 SLC24A2 NDUFB5 ATP6V0B SKP1 ATP5G3 CABP1 PRKAR1A MYL12B ATP6V0E2 COX6C MTCH1 MRPS21 RPL39 SERF2 UQCR11 NNAT NCALD UBE2V2 NDUFA4 MAPK1 NPTX1 COX7C NAP1L5 RPL35 IGSF21 PRKCG LMBRD2 PHYHIP SLC22A17 PPP2R2B OCIAD1 MLLT11 ATP6V1E1 SCOC APLP1 ARL6IP5 RAB11A ARL8B RPS26 PDE1A ENSA TSC22D1 COX5A SRP14 NFIA SLC12A5 DDAH1 LIMK1 ELAVL2 GPX4 PCDHGA6 RP11-20I23.1 ATP6V0C MTRNR2L6 ARFGAP2 KIFAP3 MDH1 ADSS ATP2A2 RAB6B ERH COX7A2 TAGLN3 RGS4 BEX1 B3GNT1 NDUFA5 IDH3A RXFP1 TPI1 KIF3C RAB6A NPTN PCDHA4 RPL26 ADAM23 WASF1 KCNK1 JUND CHCHD2 NAP1L3 MARCKS SKAP2 RAB2A FAM127A GOT1 RABAC1 PRDX3 NAP1L2 RPL11 RAB7A NGEF TCEB1 NKIRAS1 SLC25A6 NUAK1 TENM1 MTPN PPP2CB CLTC PKM MLF2 KIF1A CAPZB ATP1A1 LDOC1 TMA7 MAP2K1 ARL8A CRYM CSDE1 ANAPC11 MORF4L1 ARPP19 KCNAB2 ATP5H NDUFS5 EIF1B MIF TXN MMP24-AS1 WSB2 ISCU SCAMP5 TMOD2 HINT1 ATP6AP2 AES RPS6 NDFIP2 RAPGEF5 BSN MAP1A PPDPF TUBB4A SYT11 TUBA4A UBE2D2 PI4KA CX3CL1 AP3S1 RPL3 NPTX2 SYN1 UBB SCD5 ARF1 TM2D3 NREP SERINC3 TPT1 PPP2R2C SH3BGRL3 KRT17 CMAS ATXN10 ACOT7 MORF4L2 UQCRB PCSK5 CYCS CLTA PTGES3 RPL21 PET100 DLC1 CERS6 JAKMIP1 GUK1 GNG2 KIAA1045 CTGF HIGD1A CLIP3 RPH3A SUMO3 EPDR1 C1ORF52 SULT4A1 TMEM158 IPCEF1 WARS NDUFC1 TRIM36 GNAQ TBCA STK24 MYEOV2 HS6ST3 CDC42SE2 CNRIP1 SYT5 PCSK1N LSM4 REEP5 SCG2 STMN3 GDE1 ITGA6 UQCRH NDUFB8 HPRT1 TBR1 MT-ND5 HMGCS1 DNM3 PCDH17 VDAC3 EIF4G2 TCEAL7 GRIN2A SLC38A1 MFSD6 ZFAND5 PRKAR1B FKBP8 ATP6V1C1 RPL7 C19ORF43 PLCB1 BAG4 PRKCE TMEM59L ATP6V1B2 UQCR10 TERF2IP CDK5R1 ATP5A1 ARL1 YWHAQ SNCB USMG5 ARHGAP35 C9ORF16 BSG BEX2 SMIM13 IQSEC1 PFDN4 CDH6 RCAN2 BAI2 ITM2C PFN2 TCEB2 TLN2 CACNG3 AKAP12 MTATP6P1 PSMD12 SNX3 NDUFA13 UTRN ATP6V1F HS3ST5 FGF12 HDLBP RASL11B VPS35 MAL2 WBP2 GHITM UBA52 NSF MAP1LC3A GABRA5 RPL13A BSCL2 TPD52 CAPZA2 CFH ABHD8 CTNNB1 NEGR1 SELT KLHDC3 GRIN1 TCEAL5 ACTR1A PPP2R1A CAPNS1 RAP1GAP2 UQCRC1 FAT3 GADD45GIP1 GABARAPL1 INSIG1 TMEM65 RFC4 TMX4 UBE2E3 APLP2 FAM163B NAA38 SPRYD3 PALD1 IGFBP5 SLC8A2 SLIT1 BIRC5 AP2B1 TUBB3 KCNMB4 ARHGDIG EIF1AX TRMT112 KCNF1 PGK1 PTK2B PTN PITHD1 FSCN1 ZNF880 NDUFB7 FARSA NEFL NRAS DYNLT3 C18ORF32 CAP2 PAQR9 SUCLA2 PINK1 KCNAB1 NDUFV1 WBSCR17 C12ORF57 MAP4 FASN PNMAL2 PLOD2 MPPED1 STRAP SPTBN1 RPL12 PRDX1 HSPE1 SDK2 CTSD SYT13 RAB1A NDUFC2 DNAJA1 FIBP GRPEL1 CDH13 LYSMD2 CAMK4 CCT5 H2AFZ SLC25A22 BAALC MRAS RAB3IP PNMAL1 RPS10 RAB4A ZDHHC12 CRKL CXXC4 MBOAT7 RPS27A SLC25A4 MAP2K4 SEZ6 FKBP1A ATP6V1G1 TSPYL5 MT3 TUBA1A NDUFB3 VWA5A BRINP3 TENM3 SUMO1 NDUFB4 DRAP1 PPP2CA CPLX1 ATP5B MTRNR2L8 MRPL37 NFE2L1 PRDX2 TPPP PSMD8 CBX6 COX6A1 RAD23B ABRACL ATP5J CHMP4B LDB2 ATP5J2 MAP1LC3B CADM3 TKT RPL37A RNASEK-C17ORF49 PNKD UBE2M TGOLN2 STMN4 TMEM151A PFKP EFR3A HS3ST4 PGAM1 DPY19L1 SEZ6L SSTR1 CLPTM1 ELMO1 TMEM258 CACNB1 NDUFA2 GRIK3 TOMM7 AP2S1 BCL11B RHBDD2 USP5 LAGE3 COMMD6 PCSK1 MRPL55 UBE2F CORO2B ATP5C1 FAM149B1 ATP6AP1 NDUFA12 OPA1 MRPL20 SNN CDCA3 MT2A HSPA8 AURKAIP1 FABP3 KLHL5 RAN UHMK1 MPC2 PPP2R4 GABARAPL2 MC4R SCN3B PRELID1 RPS3A GSK3A ATRN BRK1 SUB1 DNAJC5 NDUFA1 CAB39 PMEPA1 LDOC1L KCNA1 ENO1 GRINA NDUFA11 RAB5C NCOA4 BNIP3 YIPF3 TRABD2A CDK17 PDP1 COX14 NRN1 UBL5 CEND1 RAP2A NCEH1 IDI1 MRAP2 ANO3 DCTN1 APBB1 SEMA3C ISCA1 HCN1 ESCO2 TUBD1 OR6D1P OPRM1 CNTNAP3 STX1B FAM131C FLOT2 PLSCR1 SERP2 SSTR2 CTBP1 CPLX3 C1ORF115 SLC39A10 DNAJB6 ASPDH VEGFA NRSN2 HSPA4 WASL PSENEN NCDN FABP6 APOE VGF NOP10 CD63 RHOA CD59 RHOB LIN7B CNP MRPL51 PSMC5 RORB LZTS1 SERPINE2 PROX1 GMFB FKBP1B TMEM70 TP53I11 CDK5 ANXA6 ARHGDIA ADRA1D COX4I1 SYT6 FAM19A2 EDF1 GALNT12 ACTR10 PPAP2B RP11-175B9.2 PTPRM RASGRP1 DMTN ALDOC EFHD2 NDUFAF3 MBP C14ORF132 WBP11 RBX1 NDUFB11 TOMM22 AZIN1 CDK5R2 CYFIP2 TRIP6 ETFB YJEFN3 MYL6B VSTM2L SERPINF1 SQLE SLC9A6 VDAC1 NHP2 RNF208 MAPRE2 FBXO8 TALDO1 TMEM132D MAGED1 NTNG2 SPARC GPR158 RPS4X POLR2I MCHR2 PPM1A NPTXR EPS15 NCAM2 PIN1 C1ORF56 CRTAC1 PHYHIPL ASAP1 NEFM NDP CITED2 GRM3 RPS12 SLC7A1 NDUFAF2 PRDX5 ADD2 MT-ND4L DHCR24 SDCBP BEND5 CPLX2 LINC00116 GABRG1 PELI3 CNTNAP5 SNRPE KCNK2 MGST3 MSMO1 DCTN3 HLA-B TXNDC17 PTPRN PAFAH1B2 C11ORF31 ABCC12 CAMK2G DUSP6 APLF KL S100B GTF3A RBM20 RP11-403P13.1 CPNE2 RPL23A COL24A1 ENOPH1 UQCRFS1 NEUROD2 MED31 NBL1 BTBD1 KIAA1755 NDUFB1 CDC37 PTGS2 SLC15A5 STX1A PEA15 MAOB EHD3 GOT2 RSPO3 CTU2 C6ORF1 DNAJC6 FAM219A BLOC1S1 VSTM2A PELI2 PSMD2 NAT8L LGALS1 GSTT1 LINGO1 NAPA AC073264.6 SPHKAP PTPRT PSMC3 POLR3H CTXN1 ACP1 CHI3L1 DGUOK CALN1 KLHL13 ALDH5A1 RPL13 COL11A1 C7ORF50 C1ORF233 TACR3 RPL32 HOMER1 NUDT21 SSBP3 DBNDD1 PITPNA FAM131B POMP SPRN TUBB PIK3C2G PLCB2 AIMP2 LDHB GPR98 MDH2 OPN3 RASGRF1 CLSTN2 COPS8 PTPRN2 MED10 GPCPD1 ADAMTSL1 CCDC184 HPCA RPL18A TMEM150C PTPRS CETN2 COX7B GABRA1 WDR47 ATP2B4 RPL26L1 NDUFB10 HN1 ITFG1 LHFP MAPRE3 CHMP5 ATP5G2 DNER OST4 POLR2L SMAP2 NME1 NGRN RPL8 PAK1 SPOCK1 LANCL1 PPP1R7 TPRG1L PSMB7 ZCCHC17 RPL38 CCK RNF181 SNRNP25 UQCRC2 OLA1 CRIP2 PSMA7 SLC6A17 CLTB NRCAM LAMTOR5 UBE2N ARHGAP6 DYNC1I1 AHNAK2 COX8A PLCXD2 BAD ADCY10P1 PNMA2 CAMK2N2 RRAGA BEX5 COL21A1 EGFL7 SUMO2 ROBO2 SPCS2 TMEM160 MAP7D1 NRIP3 CCDC169 OPCML EID1 REPS2 FIS1 MRPL52 GNG3 PRIM1 POLR2J ZMAT2 HDHD1 CST3 CAMKK2 PCDH15 MZT2B SCN4B PAM RLIM DYNLL2 REEP2 UBA1 BCAS1 GSTO1 MIEN1 CCDC85B ATP6V0D1 TCEAL2 ARL4D CIAPIN1 OAT KCNC2 ZNF804A SELM HTR2A ANXA1 SLITRK1 LMBR1 ASAP2 IFT52 CISD1 LYPD1 THSD7A GLRA3 PROKR2 GNB1 TOLLIP PACSIN1 PEG10 DYNLRB1 CDK14 SYT17 TIMP2 RPL36A ARF5 APOLD1 GPR78 PSMB3 RPL6 RP11-219A15.1 LINC01296 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 TBC1D15 NFIA SNAP25 CADM2 PDE1A CHN1 CALM2 ZNF385D PRNP TLE4 ZNF547 RPL31 RTN3 SCN3B DLC1 SYT11 CALM1 PRKCB PRKACB ANXA7 FTL SERINC1 MAP1B YWHAG LMO3 SCAMP5 ATP1B1 CLSTN1 RPL37A ENO2 RASGRF2 WBP11 AQP9 HSP90AB1 SERPINI1 GDI1 RELN KLHDC3 TSPAN7 RP11-111M22.2 PKM PCDHA10 ITFG1 ATP6V0E2 CA11 UCHL1 GHITM HMGCR VSNL1 TLN2 TEX2 RXFP1 EIF4A2 OCIAD1 PREPL GRIN2A ITM2B YWHAZ RAB40B SUMO2 UQCRB CKB SYNPR GNAQ PGM2L1 MORF4L1 NPFFR2 RTN4 WASF1 CYFIP2 TSPYL1 MGST3 LMO4 COX7C SYTL2 RAB3B IDS NR1I3 NCEH1 ATP2A2 CDC42SE2 TERF2IP SUCLA2 IQSEC1 CYCS MT-ND4 CLDND1 RAB4A PPP3CA ATP5C1 PLCB1 NKIRAS1 NHLH2 COX8A SLC12A5 MAGEH1 NDUFB10 KCNMB4 MAOB SEMA3C SEMA3D EDNRA ELMO1 TAS2R13 YWHAB ATP1A1 C3ORF80 OPCML NDFIP2 MTCH1 PACSIN1 FBXW11 ACTR10 ADCYAP1 NDRG4 SAP18 ARL2BP GPR37 CNTNAP5 TMEM59L PEA15 REEP5 NUAK1 SCG2 CDKN2D NUDT4 PRKCE ADAM23 EPHB1 RPL32 TBR1 TMEM130 MTRNR2L1 CAP2 SLC39A10 MARCKS FAIM2 APBB1 PAFAH1B2 DPY30 CDH8 OR6D1P SLC17A7 KLHL5 ARL8B SV2B HSPE1 CALM3 TMSB4XP4 RANBP1 MT-ND3 RPS5 PPP2R2B UQCRH MAGED2 NDUFB7 DGKG NEGR1 KCNA1 EFR3A SSTR2 RRM2B PPIA STX1A PTPRN FLOT2 NDUFB8 CPNE4 GPM6A STMN4 DPP6 HN1 TMA7 AKR1C2 KCNK2 ATP1A3 RPL38 DNAJC5 GDA GRIK3 DPYSL2 CLIP3 ATP2B4 CX3CL1 PDLIM5 ARL6IP1 NARS ZFAND5 MFSD6 NDUFB2 STK24 OLIG1 PHYHIP GNG3 LUZP2 ATP6V0B NAP1L2 PCDH17 NPTN CLTC RPL11 RHOB ITPR2 VDAC3 PAQR9 APP IPCEF1 NDFIP1 CAMK2D PNMAL1 FAT3 NDUFS5 MAL2 B3GALT2 RPL21 DIRAS2 UBQLN2 LRP1B ZBTB18 CCK RBX1 NFE2L1 HPCA RPL36A STMN3 PTCHD4 ARHGAP35 UHMK1 CSDE1 CORO2B HTR2A PPP3CB SMS MTPN MT-CO3 RPL8 PGAM1 ATP1B2 RPS27A TMEM141 TCEB2 TUBB4B TMSB4X ZMAT2 SIRPA AES GAPDH DLD SMIM13 RNF152 ARF3 UBE2QL1 LMBRD2 SKP1 CLU OXR1 UQCR10 ATP5E GUK1 KCNH5 ATG9B CERS6 POLR3H THY1 EDF1 NPTX1 PPP1CB AK5 TUBA1B ATP9A MT-ND2 HK1 NDP PPARGC1A ADTRP SEZ6L PCGF1 PSD3 LDHB MTRNR2L8 EPHB6 RPL41 MTRNR2L12\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B MT-CO1 SNAP25 RP11-111M22.2 BIRC5 HNRNPA1P40 MAP1B NR1I3 SYT1 PLEKHD1 MT-CO2 RTN4 SEPW1 OR6D1P SCN3B MT-CO3 MT-ND4 CHN1 CABP1 FXYD6 THY1 CALM2 TMSB10 CKB FTL ENO2 NFIA PDE1A PRKCB SNAP91 PREPL ENC1 CADM2 MT-ND2 SNCA RPL21 STMN1 MT-ATP6 SYTL2 ZNF385D EPHB6 SPARCL1 ATP5B VSNL1 RTN1 HSP90AA1 HINT1 TUBA1A OXR1 SLC17A7 TOMM7 TUBA1B DCLK1 ARL6IP1 RPL35 KIF3C ATP1A3 DPYSL2 TBC1D15 CAPZA2 KLC1 CTNNA2 SLC39A10 CREG2 GNAQ CRYM CDC37 NDFIP2 SLC24A2 PEX5L RAB3C C19ORF70 SARAF SYN2 RPS28 CAMK2D PCDH17 CAPZB GRIN2A UQCR10 OCIAD1 PRUNE2 NPTX1 SLIT1 PEBP1 NRGN NDUFB2 NREP ACTB STX1A HN1 STXBP1 SERPINE2 MMD PFN2 RPL26 OAZ1 GDI1 MT-ND1 MTCH1 NUAK1 FTH1 SKP1 PGK1 GPATCH4 TMSB4X EIF4G2 NECAB1 ATP9A SERF2 LMO4 CACNB1 PDCD5 RPS15 RGS4 PNKD TCEB2 CISD1 PGM2L1 NDUFB1 JUND COX7C AP2M1 ZBTB18 RPL11 RPS3A PGAM1 CLIP3 NPTXR CALM1 PCDHGA5 GPM6A PSMD8 APP MTRNR2L1 GOT1 ANO3 MT-ND3 YWHAH SLITRK1 TPI1 SH3BGRL2 CDK17 COL6A1 YBEY NDUFB5 ARPP19 RPS2 MTRNR2L8 RHOB SYN1 SLC38A1 CAMK2G GDA MORF4L1 EIF1AX GAPDH EIF4A2 SPCS2 RNF11 CPLX1 TGOLN2 ATP2B2 RPL13 ATP5H MYL6B KCNAB2 EID1 CD24 PPP3CA CCK SYT4 RPL31 NUDT4 RTN3 OLA1 ALDOC PTPRN LMO3 TMA7 FAT3 MAST3 ATP5I MT-CYB TPPP PJA2 SCN1A UQCRH RAB3IP KCNH5 CD63 BEX5 MTRNR2L12 HTR2A ATP6V1B2 GNG3 UBL5 NDUFV1 SERINC3 COX6C NEFL VAMP2 SERINC1 NAPB PSAP OLFM1 CNTN1 SPOCK2 YWHAB SV2B TPD52 RP11-219A15.1 RNASEK-C17ORF49 ALDOA RELN IDS ARFGAP2 SNRPN CYB5R3 MTATP6P1 UBC SCN1B TKT MPC2 FAM134A CD59 CNR1 PCP4 CYP2R1 ATP6V0C AC244489.1 NIPA1 WSB2 NDUFAF2 COL21A1 GHITM PMEPA1 BCAT1 ATP5O KCNA1 DKK3 ACLY BCAS2 COX4I1 COL24A1 YAF2 NPAS4 ADSS RPL3 GLRA3 LYNX1 PPP2R2C RPL32 NEUROD2 OR2X1P PFKP FARSA TUBB2A PTMA SNAPC5 NELL1 APLP1 RASL11B DPY19L1 SEPT4 LMBRD2 USMG5 YJEFN3 SDCBP PEA15 AP2S1 RCAN2 BSN SPOCK1 RAB27B TCEAL7 MRPL55 FXYD7 FUNDC1 ANGPT2 TCEAL5 LINC01296 MAP7D2 GRINA PLD3 MFSD6 FGF12 FAM163B ARHGDIG ATP2B4 RHEB NDRG4 NDUFC2 RPS12 CDK14 ZFAND5 RNF181 LDB2 STMND1 RORB WASF1 CCT5 RAN SIRPA TOMM34 UBE2QL1 PIK3R1 GABRA1 MGST3 NDUFA5 ASPDH GUCY1B3 BAD HHATL UHMK1 CLTC LGALS1 CX3CL1 CLU DCC BCAP31 MTX3 MAGED2 RPL23A CLDND2 CLIC5 SAP18 ATP5J ITPR2 PHB NARS TOLLIP MFSD2A ETS2 MT3 SLC25A4 PLCB1 GUK1 BAI2 CAP2 KIF1A TOMM20 FKBP1A HSPB8 MAP1A SEZ6L2 HSPBP1 MTRNR2L6 NSF AP1S1 YWHAZ WDR47 CYCS CYFIP2 SNCB SLC12A5 CEND1 HOMER1 CAMKK2 TOMM70A NELL2 ADAM23 GSK3A MMP24-AS1 RASGRF1 PSD3 PTPRN2 SPTBN1 SDK2 HTR1F IGF1 CDH6 KIF21A KCNC2 GRPEL1 PNMA1 COX7B DCTN3 VSTM2L TSHZ2 ISCU MSMO1 PI4KA BASP1 SLCO4A1 COX17 SH3GL2 PRNP CERS6 AP2B1 ATP6V1F C11ORF31 SKAP2 CTSD UROD APBB1 TAGLN3 DIRAS1 PRKCG BSG IDH3A NDUFA1 PRKACB RAB40B UBA1 FAIM2 INA MAL2 TUBB4A CLSTN1 KLHL5 RPL18A PRDM8 ARHGDIA LRP1B LL0XNC01-16G2.1 SMIM13 DNM3 ACTR10 RSPO3 ZNF350 RTBDN ATP1A1 GAP43 CAMK4 HPCA REEP5 GPX1 ETV5 TUBB4B VDAC2 RPL41 SCAMP5 RABAC1 VEGFA APEH YWHAG TMTC1 SLC25A6 TUBA4A SPATA13 ZMAT2 PSMD12 SERPINI1 PRKAR1A BCKDK PTCHD4 PINK1 PARM1 EGFL7 SLC31A2 CMPK1 KIFAP3 EHD3 LCNL1 SLC22A17 EFR3A COX6A1 PAK1 NDUFS5 STUB1 PDGFRB NCDN UBA52 ATP5F1 DMTN COX7A1 APLF MAPK1 NDFIP1 NDUFB11 CHMP4B C14ORF132 ATP1B1 CPE CACNG3 TMEM35 CNDP1 PPM1A NGRN MAP2K4 ELAVL4 PKM COX6B1 ACTG1 NCALD ARL6IP5 ATP6V0E2 MYL6 MAPK8IP2 RPS6 NGEF ATP5C1 FOXP2 CRIM1 TBCA CTNND2 LAMA4 CADM3 MAPRE3 SSTR2 SYT11 RPS27A NEGR1 ATP5G3 CSDE1 PRKCE BTBD10 NDUFA13 PSMC1 CDKN2AIPNL ITM2B NEFM NMNAT2 RPL39 CHL1 EIF1 DYNLT3 PTGES3 PITPNA TLE4 CHI3L1 RP11-20I23.1 RAB5C HSPE1 ASAP1 AP3S1 RHBDD2 RPL17-C18ORF32 C18ORF32 LRRIQ1 MIF TUBB RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 PRNP RTN3 SNAP25 RPL41 DPYSL2 VSNL1 MORF4L2 MT-ND4 MT-CO3 SPOCK1 SYT1 B2M MT-ND3 RPS12 PSAP CALM2 NPTX1 GPATCH4 DNER HMP19 TMSB4X TUBA1B FAIM2 GABRA1 RPL18A RPL37A EIF4A2 GPM6A CLU PPP3CA RPL38 TMEM59L MAPRE3 NUAK1 CALM3 IDS PEBP1 MSMO1 TSPAN7 CHN1 NCAM2 SLITRK1 GFY SYT4 UROS MT-ATP6 CNTN1 REEP2 CAV1 NGRN PPIA ATP1A1 LMO3 CADPS2 TPPP YWHAZ BEX1 RAB3B SYTL2 MTRNR2L6 UBC ATP5A1 FOS ARPP19 SYNGR1 RAB6A NDN EIF1AX GDI1 TMOD2 MRFAP1 TUBA4A AES ACTC1 SPARCL1 TSPYL1 RPL32 C4ORF3 SNRNP25 RBX1 HSP90AB1 RNF11 CARNS1 ATP1B1 SCD5 DNM3 COX7C CDK5R1 ITM2C SERTM1 KLC1 SLC38A1 SOD1 PTK2B CFH ZFAND4 CDK17 UBE2N ATP2B2 RPS6 DYNLL1 RHBDD2 SRM TUBB4B CAMK2D MORF4L1 RSL24D1 KCNF1 VAMP2 RNF208 BNIP3 KCNA2 STMN2 ARF3 COX4I1 HMGCR SLC22A17 COL6A1 COX6B1 PNMA2 PMEPA1 DYNLL2 ENO2 ADD2 SNN THY1 TIMP2 ZMAT2 APLP2 ATP5I PRKAR1B FTH1 MC4R INPP5F STUB1 ITM2B PREPL PECAM1 TUBB2A DNAJC6 NRAS DGKG DMTN SLIT1 PRKACB QDPR MYL6B NEGR1 BASP1 MMD ISCU RASGRF2 PRKCE PGRMC1 CCDC74A PPDPF LPPR4 BIRC5 NAP1L3 TLE4 RPL35 SCN3B NRSN2 PPP2R2B STXBP1 CLSTN1 MDGA1 EIF4G2 WFS1 PTGER3 SERPINE2 RPS15 CCK CRKL ANKRD18A PRUNE2 ABHD14A UQCR10 SH3BGRL2 CFL1 ATP1A3 YWHAH ADAM23 RPL13 CNP CABP1 MTATP6P1 AP2B1 NGEF CNTROB SCAMP5 PJA2 NACC2 UBE2QL1 CX3CL1 SERINC3 ELAVL4 ADSS MZT1 NAP1L2 RAB6B ATP2A2 CACNB1 CDC37 TBCA MTCH1 STMN3 KLHL13 SYT6 SOX4 MAGED1 SEMA4G SEZ6 SERPINI1 MAP2K1 FXYD7 EID1 RPL15 LGALS1 TCEAL2 YIPF3 FABP7 SSBP3 NRGN ZBTB20 CAP2 VPS35 PGK1 TF RPS28 NSF RP11-219A15.1 ATP6V1G2 AC244489.1 PCDHA10 PCDHA4 PCDHAC1 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B SNAP25 MT-CO3 EIF4A2 MT-ND4 DCLK1 CHN1 GRIN2A SYT1 RTN3 RP11-111M22.2 MT-ND3 COL12A1 HMP19 CAMK2G SERINC3 MT-ATP6 MTRNR2L12 RPL13A ATP1B1 MT-CYB PCP4 UQCR10 MT-ND2 GRIK3 RPS6 CSDE1 MTRNR2L1 SERPINI1 EFHD2 CAP2 APLP2 PREPL PCDHGA5 CHL1 MT-CO2 APP CDK14 AK5 GRIK1 SLC24A2 SCN2B ARL8A LSM4 ATP5H RTN1 CALM2 RPL39 RPL7 PNMA2 SLC12A5 RPL10A TRHDE BIRC5 CFH C9ORF16 GNAQ SEZ6L SEPW1 OLFM1 ITM2A TRIB2 WASF1 GPR6 PCSK1 EDF1 SYT4 MYL6 H2AFZ TMX4 ATP6V1B2 PFDN1 MAP1LC3A STX1A RGS4 ATP6V1E1 PSD3 ADSS VAMP1 NPTX1 ANXA6 ANKRD20A11P FAIM2 EPB41L3 C18ORF32 ATP9A PSMC1 SCD5 SEMA4G NDUFA13 PCDH17 GDF10 RNF208 ATP5I SCAMP5 SKOR1 MAP2K1 COX6A1 D4S234E CDH13 PPP3CA CALCRL RPS26 EXTL2 MSMO1 SPOCK1 GLUL LMO3 MTRNR2L6 NDUFB4 SULT4A1 ATP5A1 KIFAP3 SYNGR1 BAG4 MAST3 CRYM AQP4 TSPAN7 NRGN ATP1A3 ARL4D RPL32 PFDN4 PRKCE BEX2 ZNF385A SOX11 DCTN1 HOMER1 CAMK4 GUCY1A3 CX3CL1 PPP2CA CAMK2N2 UCHL1 FABP5 QDPR SYN2 RANBP1 VDAC1 PCDHA10 LAMTOR5 AP2M1 CD163L1 ATP5G2 ABHD14A MYEOV2 PPP2R2B DNM3 TOMM34 SHC4 PVRL2 COL11A1 TMTC1 STXBP1 MT-ND1 CHP1 ATP1B2 ATP6AP1 NKIRAS1 NUAK1 CA11 CTNNA2 RP11-1396O13.2 MTATP6P1 NDUFB5 KLHL5 CLDND2 SLC38A1 RPL21 CALM1 NGFRAP1 COL25A1 PPP1CB MOBP HS6ST3 MAPK8IP2 BASP1 RPS15 OXR1 ATP1A1 TMSB10 PDP1 SPARCL1 POMP COPS8 TSC22D1 PLCB1 DMTN COX4I1 SCN3B CD59 SSBP3 GPM6A FAM163B STMN2 SLC7A8 PRKCB MAP1B PRKAR1B ETV1 RAB3C ADD2 OPCML PGRMC1 DPP6 GREM2 RPL12 ROBO3 PRKAR1A RASL11B ANXA4 UBE2QL1 MPPED1 PTCHD4 NEUROD6 ELAVL4 PRKACB TSHZ2 LRP1B ARHGAP29 GRINA ARHGAP35 DIRAS2 MAP4 SPON1 RPS28 NEFH IDS MYOM2 TRIM59 DISC1 RPL17 RPL41 RPL17-C18ORF32 FRMPD2 SYT5 TBC1D15 ZNF385D SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 MT-ND3 MT-CO1 MT-ATP6 MT-CO2 MT-CYB CHN1 PRNP SERINC1 MTRNR2L1 PEBP1 YWHAB ATP6V0E2 CAMK2D ATP2B4 CALM2 NRGN TSPYL1 GPM6A PPDPF MTRNR2L12 SYT1 MT-ND1 MT-ND2 BIRC5 MAP1B PSAP TF TMEM59L CREG2 ENO1 MT-ND5 THY1 CLU ANXA6 REEP5 UCHL1 TMOD2 BEX2 MYBL1 FKBP8 KIF1A GRIN2A STMN4 TMSB4X ATP5B RPL31 NAP1L3 PPA1 QDPR HHATL STMN2 CAPZB CYFIP2 PREPL NPTX1 PTPRT ATP1B1 ATP2B2 MTATP6P1 BASP1 CADM2 CDK5R1 SLC25A4 IDS NTHL1 SLC39A10 AP2M1 RHOA GSK3A SYT11 NRCAM NDN SCN1A KLF2 NCALD ATP1A3 DYNLL1 CALM3 KCNA2 RPL39 PGRMC1 ENO2 TUBA1B NMNAT2 SNAP25 GRIN1 YWHAH TUBB4A ITM2B DYNC1I1 KLC1 USMG5 KCNMB4 HSP90AA1 JUND NEFH PFN2 PCDHGA10 VAMP2 FAM127A RPL32 CNTNAP3 UBC MAP2K1 CXXC4 DNAJB6 SLC25A53 PRKCB FAIM2 TBC1D15 ANXA7 TCEAL2 ARL6IP1 SYT4 MTCH1 RTN4 INPP5F C1QBP PPIA CAMK2G TMA7 MRPL37 MAP1LC3B UQCRH PGM2L1 USP27X CKB ATP5A1 MLLT11 LMO4 KIF21A LRP1B SYTL2 RPL13A RAB3B ZNF385D NDUFA13 RPS15 GTF2H2C_2 TUBB CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 SYT1 CHN1 GPM6A SNAP25 MAP1B MT-ND3 GDI1 CALM2 NDRG4 PREPL MTRNR2L1 TMX4 MT-ND4 WASF1 DIRAS2 RAB3B PPP2R1A SPOCK1 PCP4 NRGN MT-ND1 RAB6B ACTB CALM1 BASP1 ITM2C NRCAM SERINC1 TAGLN3 HSP90AA1 CX3CL1 PIK3R1 SNCA ENO2 NXPH2 TMEM155 PJA2 PPIA CDK5R1 MTRNR2L12 RPH3A ATP1B1 FAIM2 TUBA1B PNMAL2 YWHAH VAMP2 ATP1A3 EIF1B ARL6IP1 SCAMP5 TSPYL1 TRHDE CNTN1 SPOCK2 RTN3 SCD5 MT-CYB IDS ARFGAP2 SNRPN TUBB2A DPYSL2 DPY19L1 SUB1 GPR158 SYNJ1 OAZ1 ITM2B LMO4 GHITM ATP1A1 PRNP PPP3CB CALM3 MT-ATP6 ATP2A2 STRAP NPTXR GRIK1 DUSP6 SNCB SLC38A1 CAPZA2 RAPGEF5 RTN4 PEX5L PKM RCAN3 CHL1 MT-ND2 TSPAN7 SEZ6 UQCR10 NPTN SUMO2 MTATP6P1 B3GALT2 PDE9A SLC17A7 PRKACB GAPDH SAP18 YWHAG COPG1 GRIN2A NTN4 HSP90AB1 PAFAH1B2 OXR1 PNMA2 ETV1 ZFAND5 NREP CERS6 NAP1L5 CPE ANXA7 PRKAR1A SV2B SLC24A2 CRIM1 EFHD2 MAP2K4 ITFG1 CLPTM1 STMN1 EPS15 SPCS2 MAL2 ASB13 MTRNR2L8 TLE4 ARL4C PPP2R4 BIRC3 TKT RCAN2 GALNT14 EID1 DDX3YP1 NXPH3 SPHKAP PCMT1 GMFB NEXN TSPAN4 HDAC1 NEFH PIN1 ZMAT2 ALDOC OR2X1P PDCD5 ATP6V1G1 FAM71E1 BRICD5 MYL6 CLU OLR1 IPCEF1 EFR3A NDUFB7 TMTC1 KLC1 GABRA1 GDF10 PPDPF TPT1 UCHL1 MORF4L2 PNKD RHOA CADPS2 CRIP2 RAB11A MAP1A PFKP EIF4A2 IQSEC1 KIF3C TGOLN2 CKB EIF4G2 BCL11B PEBP1 ATP6V0D1 DYNC1I1 NNAT NEUROD6 MTPN TBCB NEGR1 GRIN1 CRKL ISOC1 COL6A1 CLSTN1 FBXL15 RHOB UBE2M DPP6 ATP2C2 GRIN3A DYNLT3 HCN1 NAP1L3 ELAVL4 SH3GL2 MAPK1 PDLIM1 NOV COPS8 DCLK1 UBE2V2 ATP6AP2 SMIM13 SALL2 PAM ADAM23 LMBRD2 CYP26B1 ATXN10 ARPP19 ATP6V0C MFSD6 LGI3 CADM2 WSB2 CHGB MAP4 NDFIP2 PRDX1 ARF5 CAMK2G CD63 GABARAPL1 DUSP4 TMEM130 UBQLN2 SYNPR GNB1 NHP2L1 GRINA STX1A LDB2 SLC9A6 WDR4 NDFIP1 RHEB CLTC ATP2B2 SNX10 C1ORF115 COL11A1 UBA1 FAM163B AP2B1 FXYD7 TMEM11 RNF11 DSTN DCC LAMTOR5 NDUFA11 NELL2 FABP5 TMEM59L PLCB2 CDH6 MRPS21 KCNV1 DNAJB6 TOX POLR2M PPTC7 BSG PSAP EIF1AX PSD3 KLF2 CDK14 LMO3 TMEM35 COTL1 CFL1 DCTN1 KIF5A MGST1 PPP3R1 UROS MAP1LC3A TCEA2 SCOC VPS35 KIF21A PPP3CA ELAVL2 CRYM COL24A1 RAB3C MRPS7 TP53I11 ASAP1 PGAM1 APLP2 MPPED1 CAMK2D RFK NDUFB8 PRUNE2 TRMT112 FAM84A RPS12 C14ORF39 SLC30A3 LUZP2 DYNLRB1 MTUS1 ISCA1 APBB1 SLC35B1 ATP2B4 NRN1 FBXW11 MTRNR2L6 FTH1 SERPINI1 APP FRMPD2 MAPKAPK2 AKAP12 PEF1 RPL8 NRAS ATP9A SARAF RAB2A COL12A1 APEH PPP2R2C ELFN1 PTMA VSNL1 RP11-195F19.5 IDH3A RELL1 MMD ETV5 ACTG1 ZBTB18 ARL8A SYT13 FASN NDUFC1 TSHZ2 INSIG1 YJEFN3 PCBP1 PCSK1 NAT8L MAGED2 SLC12A5 STX1B RGS4 PRKCG RP11-20I23.1 SDCBP SCN3B DNAJC5 PGM2L1 TMEM120A PHYHIPL RAB40B STMN2 KCNF1 SNAP91 NAA38 RPL37A PET100 RPL38 ANO3 GPX4 ERBB3 PRDX2 LMCD1 NGFRAP1 LINGO1 USP27X TUBB3 SLC26A10 ALDOA NUDT4 B2M MBOAT7 PLEKHD1 HNRNPA1P40 RPL17 RPL17-C18ORF32 PCDHA4 PCDHAC1 PCDHA10 PCDHA9 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 ZNF385D RAB3B CCK SYT1 RP11-111M22.2 ATP1B1 RTN3 ENC1 YWHAG NR1I3 NRCAM PRKCB SPARCL1 SLC39A10 SEPW1 CABP1 CHN1 RTN4 AK5 PLEKHD1 TBC1D15 BSCL2 SARAF GRIN2A OLFM1 CALM2 LMO4 SLC12A5 PNMA1 TSPAN7 UQCRC1 MAPK1 UCHL1 DYNC1I1 CLU SERINC3 RPL32 ARPP19 PREPL IGSF21 TCEAL3 YWHAH PRNP PRKACB NFIA DPYSL2 TUBB2A ARFGAP2 CALM3 BEX2 EFR3A PSAP RPL8 MRPL55 SSBP3 COL6A1 RTN1 RPL7 ETFB ARF3 RPL3 GDI1 COX7A2 BIRC5 TMSB4X RPL21 RPS10 SPTBN1 CD63 BAI2 ATP6V0B BEX4 NEUROD2 FTH1 COPRS RELN MAP1B TUBA1B APP LMO3 SULT4A1 NECAB1 PGM2L1 RPS6 SLC24A2 NUAK1 ATOX1 PCMT1 MAGEH1 RAB6B SKP1 APLP2 GNAQ KCNAB2 NGFRAP1 C14ORF2 TUBB4A PLCB1 NEFL MT-CO2 RPL26 MT-CO1 PEX5L LGALS1 NDUFAB1 TMEM59L FKBP8 GPM6A HSP90AA1 KIF1A EHD3 COX7A2L MAP2K1 FAT3 HSP90AB1 OR6D1P LDB2 TMEM130 VPS35 MAL2 CLDND1 YWHAZ ANKRD20A11P RAB40B ASPDH PTK2B DKK3 C1ORF115 RLIM PNPLA5 TCEB2 TMA7 NDUFA8 COPS8 NDUFA4 SH3GL2 ARHGAP29 NDUFS6 MTPN OLA1 MAP1A GSTT1 AES BSN ENO1 SCG2 PSMC1 PJA2 NDUFA13 RPS26 POLD1 INSIG1 SOD1 ASAP1 NDUFB5 MAPRE2 SLC25A4 RAB11A VDAC1 CDC37 SUB1 ELMO1 NDUFB2 ANO3 YWHAQ RPS12 CTSD RPL37A GUK1 RPS4X ATP6V1B2 CALM1 PHYHIP BEX1 PEA15 KCNF1 OPN3 SIRPA RGS4 ACTR1A IPCEF1 ATP5J WDR47 NEFM NAT8L MCHR2 GPR37 ST20 METTL18 ENSA ATP2B4 COX7A1 PPP1CB ADSS PPP5D1 MRPL33 PET100 ATP5E SYT17 SYT4 MT-CO3 CDH13 MTCH1 ACTG1 COX7C TOMM70A NREP STXBP1 PSMC5 STUB1 RPL6 ATP6V0D1 NFE2L1 NELL2 NBL1 MLLT11 DNM3 NPTN MAP2K4 PRKAR1B TMOD2 SYT11 RANBP1 COL5A3 KIF21A ITFG1 ATP2A2 SH3BGRL2 LANCL1 C19ORF70 SYNGR1 TSPYL1 PTMA AZIN1 ITM2B SLC35B1 NRN1 MSMO1 NMNAT2 TMX4 UBE2N GRIK1 SV2B ARL6IP1 BAALC PCP4 IMMP1L COX14 LRRIQ1 GRINA ATP5A1 PGAM1 GABRG1 ZNF365 UBQLN2 LINC01296 NKIRAS1 CISD1 SERPINE2 STMN4 AP2B1 STMN1 CHL1 CD59 VGF RABAC1 ATG101 C11ORF31 NDUFA1 TPPP SERPINI1 ATP5I GPR26 PSMD12 HMGCS1 RTBDN HPCA ATP5G1 FAM198B SLC8A2 C2ORF47 INPP5F SLC9A6 MTRNR2L12 PPDPF DNAJB6 UBE2V2 CA10 SLC22A17 SLIT1 BASP1 CDC42SE2 CDKN2D SSTR2 ELAVL2 SCN2B NAPB OPCML SCN3B GAPDH OXR1 DNAJB9 FAM134A MRPL52 COX5B ETV1 PPP3CA RPL31 DMTN YAF2 UQCRC2 FAIM2 ANXA6 NDUFA11 CERS6 PTPRS TSPYL4 LPPR4 SQLE WSB2 MAGED1 ENOPH1 NPTX1 HOMER1 CACNA1H UROD PPARGC1A RPL13A ARL8B FSCN1 TNNT2 SLC25A22 PIK3R1 PPM1A UBL5 RFK CLEC2L PVRL1 SAP18 FKBP4 GRM3 NDUFB8 SEZ6L2 RPS15 SNCB CNTNAP5 CTNNA2 REEP5 PSENEN PFN2 YWHAB ATP9A RPL10A ZBTB18 CYCS GNB1 HMGCR STX1A SERINC1 LINGO1 CNIH3 NDUFA5 C19ORF53 HK1 ATP6V0E2 CDKN2AIPNL KCNAB1 ALDOA KRAS PRUNE2 SCN1A DNAJC6 PPP2R2B PPIA KLC1 TOMM20 TMEM158 COMMD6 MDH1 MT-ND2 RASGRF1 C9ORF16 CCM2L VAMP2 YJEFN3 FGF12 DRAP1 COPS7A ACTR6 RPL41 TUBB3 IDS MYOM2 AC244489.1 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL38 RPL31 SNAP25 RPL32 RPL37A CHN1 SEPW1 RPL36A YWHAB RPS6 RPS15 NDUFB10 NDUFAF2 CPNE8 RPL39 CPLX2 RPS28 RPS5 RPL6 ATP6AP2 FABP6 TMA7 RGS4 CKB AP3S1 EIF1B NRGN NDFIP1 NUP37 SYTL2 RAB3B TUBA1A ATP5G2 SYNPR DIRAS1 ENO2 TBC1D15 CCK BEX1 RPS10 RPL23A TPRG1L RPL15 NDUFB3 CABP1 NEFM CADM2 PSMC5 RHBDD2 SYT1 DRAP1 GUK1 RPL7 MT-ATP6 RPL26 GRIN2A IPCEF1 PLD3 GPM6A NELL2 FAM127A NFIA GRINA BEX2 ALDOA ATP5E STXBP1 NPTN ALDOC MZT1 ITFG1 RPL21 RTN1 STX1A MT-CYB TSPYL1 ARFGAP2 PPP3R1 RPS27A RTN3 RPL11 DCLK1 RPL3 USMG5 SNAP91 RPL18A BIRC5 UBE2QL1 TESPA1 OXR1 HSP90AB1 SH3GL2 SNCG NAPB MT-CO3 IL4R PEBP1 TCEB2 ETV5 TMSB4X ABHD14A NOP10 DNAJC21 CAMK2G KIF5A PTGES3 NAT8L COX7C ATP2B4 NCOA4 GPR88 MT-ND1 TUBD1 PKM STMN4 SNX10 SYT11 RPL35 GOT1 MAP4 PLP1 SNRNP25 NDUFB1 YAF2 CLPTM1 IGFBP6 TAGLN3 CDK5R1 KLC1 PSD3 DYNC1I1 NUAK1 STMN3 BLOC1S1 SEZ6L ASAP1 AES SEZ6L2 PGK1 ARF3 TUBB4A SLC25A22 NRCAM PPM1A STK24 NFE2L1 DPY19L1 STMN1 VSNL1 NBL1 NAP1L2 C14ORF2 INPP5F CDC37 CORO2B ATP5I LL0XNC01-16G2.1 SYNPO GRIK3 MAP1LC3A MORF4L2 PHYHIP GABARAP IDS RPL41 NSF LINC01296 RPS3A AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SYT1 BIRC5 YWHAH ARL6IP1 MT-CO1 RP11-111M22.2 RTN4 CCK RTN3 GRIN2A STXBP1 CAMK2G TUBA1B CHN1 SNAP25 CLU ENO2 DPYSL2 PNKD STMN1 PRKACB CLSTN2 NPTX1 PREPL CALM1 NR1I3 SSTR2 OAZ1 STMN4 PRKCB PCDHA4 OLFM1 CMAS NCEH1 BEX1 COX7C RAB6A TESPA1 RPL21 NFIA PPP3CA ENC1 NGEF NAPB MAPK8IP2 MAP1B CALM3 SERPINE2 FTL NEFL SYTL2 OR6D1P SH3GL2 SV2B MAP1A MT-ND1 PDE1A RPL35 MAPK1 SYNGR3 SNCA VSNL1 MDH1 ONECUT2 WASF1 IL20RB RPL32 COX7A1 DCTN1 NGFRAP1 COX4I1 NECAB1 NEGR1 LYNX1 NPTX2 RAB3A USMG5 NELL1 ADAM23 RPL17-C18ORF32 RP11-20I23.1 HSP90AB1 GSK3A UHMK1 FAIM2 HSP90AA1 MT-CO2 GPX1 ATP6V0D1 ARF1 OXR1 VAMP2 CALM2 GAPDH CDK5R1 ANXA6 PRUNE2 MAP2K4 NPAS3 ATP1A3 MT-CO3 PPIA PLD3 SCN3B MTRNR2L1 ATP6V0B TMSB10 BSN UQCRC2 GDA GPM6A SYNGR1 GAP43 BEX4 PHYHIP PPP1R7 IPCEF1 MT-CYB KIF21A CADM2 NRN1 ATP1B1 KRT17P6 MTRNR2L12 SPARCL1 BASP1 TM2D3 TMEM59L ATP6V0C NDUFA4 LRP1B ZNF880 MAST3 QKI IDS PLEKHD1 ZNF385D MIR6723 TUBD1 COL6A1 SEPT4 RPL38 CACNA1H EIF1B MRPS21 MT-ND3 SLC24A2 SMYD2 SIRPA CCDC141 ANAPC11 RABAC1 NEFM MRAS KCNC3 APP C9ORF24 RAB37 MORF4L2 DNAJB6 PPP2R2B PSMC1 MTPN GNAQ CALCRL KCNAB2 UQCR10 PEA15 MYL6B PCP4 STMN2 NDFIP1 CLSTN1 DYNLL1 C14ORF2 PACSIN1 DNM3 TMEM258 PRDX1 AZIN1 HS3ST2 MT-ATP6 MRFAP1 LMBR1 UBE2D2 NDUFA5 SLC17A7 EGR1 ATP5J2 RAP1GDS1 PEX5L NDUFA12 CISD1 B3GALT2 CDK5 DGUOK SNRPN MAGED1 PINK1 NFE2L1 PCDH17 RHOB NDUFV1 CTXN1 EIF1AX NELL2 RP11-82O19.2 UCHL1 AP1S1 ATP5O PSMB3 SCOC COX8A C16ORF93 SUB1 ELAVL2 SLC39A10 TMEM155 FTH1 OAT LDB2 RPL41 UBQLN2 MSMO1 GPX4 ATRN WASL TUBB2A DYNLL2 ACTG1 ATP5E GOT1 NDUFB8 RAP1GAP2 RNASEK-C17ORF49 IDH3A NBL1 CDKN1A SST LMO4 SCN1A ATP5G3 MRPS7 SALL1 TBCA NAP1L3 CABP1 ASAP1 RPL13A CRIM1 NARS PCDHB10 HCN1 SERP2 STX1A PGAM1 SLC8A2 SEZ6L2 ALDH1A1 GABRA5 STMN3 SPTBN1 FGF12 CERS6 DGKG RPS5 C1ORF233 RHOA FXYD6 CKB LPPR4 HMGCR CA11 SYT13 NDUFB1 COPG1 BTBD10 ROBO2 LIN7B ATP1A1 C11ORF31 AK5 RAB11FIP5 LMO3 POLR2L BRK1 RPL18A TPRG1L CHGB PFN2 RPS3A EBF4 ATP5I FUNDC1 SKP1 ESYT1 INCENP RPLP0P2 DHCR24 CD59 MTCH1 OLIG2 MFSD6 PFKP EIF4G2 KREMEN2 COX7A2L ALDOA ERH GABRA1 PI4KA PPP3CB RPL10A PJA2 RPL8 FIS1 ATP6V1E1 GABARAPL1 HOPX ALDH5A1 TMX4 PTMA NUDT21 ARPP19 NOV H2AFZ ATP5B SEMA5A PDP1 PGRMC1 PIK3R1 SNCB ACTR6 NRCAM SLC12A5 RIT2 SYN2 PTPRN GNG3 SSBP3 KCNC2 RFK NEUROD6 CDK14 PAM HINT1 TGOLN2 MAP2K1 CFL1 OPN3 DNAJC6 COX5B NDUFS5 MTRNR2L8 LSM4 SYNJ1 TPT1 ARL8B RPS28 CACNG6 FABP5 CRIP2 TOX2 TPI1 EIF4A2 NDUFA11 PCMT1 FERMT1 RGCC TMEM35 PAK1 PEBP1 LINC00116 SARAF HOMER1 ISCU PRDX2 RPL6 NAPA NDUFB10 SCN4B NPTXR COL24A1 TCEB1 RPL3 ATP6V1F YWHAG MGST3 NKIRAS1 RPL11 SERINC1 SERF2 MANBAL TOMM20 GHITM RPL31 GUK1 NPTN DIRAS2 SLIT1 HS3ST5 NRGN SH3BGRL2 CADM3 REEP2 CREG2 GUCY1A3 ZMAT2 ENSA WBP2 APLP2 C16ORF13 RAB2A S100A6 SNAP91 SYT11 RAP2A PRNP KRAS PTGES3 IGSF21 PGM2L1 RPS4X EFR3A KIF1A CHMP5 NGRN NDUFB4 SCN2B LMBRD2 RPS26 WI2-1896O14.1 PSMD2 CHL1 BAI2 EIF1 RNF181 FAT3 SLC26A10 NSF TUBB3 BSCL2 NDUFA13 RPL36A ATP6V1G2 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND3 MT-CO2 SNAP25 MTRNR2L1 YWHAB MT-CYB TUBA1B NPTX1 ENC1 PTK2B MT-ATP6 UHMK1 CADM2 RPL32 ENO2 MAP1LC3A GPM6A LMO3 SYT1 MT-ND2 NFIA RAB3B NR1I3 DCLK1 RELN NECAB1 DYNLL1 SLIT1 WDR47 SSBP3 FTH1 SCN3B PRNP HSP90AA1 NDFIP1 COX7C RP11-111M22.2 STXBP1 APLP2 GDI1 FAT3 MTATP6P1 MT-ND1 CHN1 ATP9A CEND1 EIF4A2 MT-ND4 DPYSL2 PCDHA10 DNAJC21 HNRNPA1P40 MTRNR2L6 ESCO2 PFKP ATP5E SARAF PREPL KIF1A TMTC1 GRIN2A CABP1 LDB2 DCTN3 DYNC1I1 GPX4 RPL13 TMX4 RTN4R RAB6B ARPC4 TUBA4A PRKAR1A RNASEK-C17ORF49 CDK5R1 PDP1 EPDR1 RPS4X TSPAN7 RPS28 GDA B3GALT2 KIFAP3 DNAJB6 SYT3 CALM1 DNAJC6 PRKACB RPL41 ATP2A2 NAP1L3 TBCA KLC2 LRP1B HRH3 SERINC3 CREG2 SNCA GABRA1 TSC22D1 TERF2IP NPTN MAP1B RPL38 BSG RTN3 FASN SNCB TCEAL3 GPR37 QKI PGRMC1 GAPDH CTNND2 SYNJ1 PPA1 HMGCR LINGO1 MTCH1 PLD3 FAM219A CFL1 NDUFB1 BCAS2 RPL31 HHIP MGST3 EXTL2 TNNT2 RTN1 RTN4 SIRPA ZBTB20 RPL8 COX7B CKB ACTG1 UBE2QL1 CPLX1 KLC1 CACNB1 UBA1 RPL7 WARS IPCEF1 APBB1 MORF4L1 SRP9 GDE1 HSP90AB1 WASL SLC12A5 LINC01296 GABARAPL1 TNS1 JUND NAP1L2 SLC25A4 DMTN WASF1 MYRIP STMN2 SEZ6L2 ARPP19 MLLT11 ARL2BP GUCY1A3 FXYD6 RPL36A PCDH18 TIMP2 OR2X1P CALM2 RXFP1 RPL26 NEUROD2 DCTN1 CSDE1 NDRG4 FABP5 TM6SF1 PJA2 PSAP NUAK1 GNAQ GNB1 MT-ND5 SPOCK1 SV2B MAPRE2 MYL6 AES RPS27A SULT4A1 PTGES3 FAM131B NCDN CBX6 UBE2M MAP2K1 SLC1A2 BSCL2 MIF PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 RAB3B MT-ND2 CHN1 MT-ATP6 SYNPR MTRNR2L12 MTRNR2L1 MT-ND1 MT-ND4 UBE2V2 TBC1D15 RPL13 SNAP25 RAB6A COX4I1 MTRNR2L8 NUAK1 UQCRB BIRC5 TNNT2 RP11-111M22.2 MT-CYB TSPYL1 DKK3 MAP1B UQCRC2 RPL31 ARPP19 CREG2 TUBA1B SERINC1 RPL15 MT-ND3 MT-ND5 JUND MTRNR2L6 TF C7ORF50 SPARCL1 FAM134A THBS4 UQCRC1 BASP1 STXBP1 NRGN TKT MTUS1 CTNND2 C14ORF2 DYNLL1 SPATA13 ATP6V1E1 ENC1 LDB2 C11ORF31 TESPA1 SYT10 MTND1P23 NDRG4 MTATP6P1 NPTN GRINA NFIA THY1 SCAMP5 PSMC3 FAM149B1 RPS15 EIF4A2 TLE4 RTN1 HEATR4 STMN1 SLC12A5 TRAPPC1 IQCK VSNL1 CLTC PRKCB PET100 TOLLIP AP2B1 RGS12 FGF12 ITPR2 NGEF HOMER1 PARP9 MGST3 RNF11 FBXL16 STK32B VAMP2 MCHR2 PREPL SUMO2 MORF4L2 PPP3CB CKB RAB6B WASF1 RAB11A ASNA1 ARF3 PRNP NCOA4 TAGLN3 PPP3CA DCLK1 NPTX1 CHGB COX7C TUBB2A YWHAG TSPAN7 YWHAQ ARL6IP1 ELAVL4 SLC17A7 SLC38A1 SPOCK1 ADAM23 TMEM35 AZIN1 CLIP3 PNMA1 PDE1A SKAP2 NDUFAF2 LAMA4 CTBP1 GABRA1 POSTN NRCAM STMN3 TEX2 GDI1 MAPK1 CA10 CPNE4 SPOCK3 ATP2B2 CDC42SE2 LRFN3 PEF1 OLFM1 ATP6V1C1 ANGPTL4 SLC24A2 FKBP1A ZNF365 FTH1 SNRPN CNTNAP3 RELN NEFH CSDE1 STX1A CISD1 SNAP91 SYT4 MAST3 MORF4L1 FAM3C GTF2H2C_2 ERBB3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 TLE4 MTRNR2L1 CALM2 SYT1 MT-CO1 CHN1 PNMA2 MTRNR2L12 MAP1B TUBA1B PPIA PCDH17 ACTB DIRAS2 MT-CO2 DCLK1 RPL31 RTN3 IDS NGFRAP1 RPL6 PEBP1 MT-ND2 RGS4 GPM6A NGRN TSPAN7 MT-ND4 BASP1 GNB1 TMSB4X PREPL MTRNR2L6 LRP1B UQCR10 OXR1 ANXA7 ALDOC MAP2K1 RPL32 NDRG4 HSP90AA1 RPL41 FABP5 PRUNE2 HSP90AB1 PGM2L1 PRKCB HTR2C SKP1 RAB3IP CALM1 PRKACB NRGN RPL38 TERF2IP PRKAR1B TMSB10 SNCA MT-ND3 CAPZA2 SLC6A17 ATP5I YWHAZ BAALC COL11A1 RTN4 SEZ6L2 GRIN2A MT-ND1 ATP1A1 UQCRB CALM3 PCP4 PTPRT BIRC5 OPCML APP AP2M1 SPARCL1 ATP6V0E2 TMEM59L NRIP3 VSNL1 MTRNR2L8 EID1 RPL23A TRHDE BTBD10 NDUFA5 CDH6 ALCAM RP11-111M22.2 FBXL15 PFN2 ENO2 ACTR1A DPYSL2 MT-CO3 COX6A1 FGF12 ARF3 TMA7 RPS10 PNKP RTN1 CLSTN1 USP5 KIF21A GDA GNAQ MORF4L1 EFR3A SPTBN1 ATP1A3 HS3ST4 VDAC1 PSMA7 MARCKS PINK1 ATP2A2 GABRA1 ARL6IP1 PHYHIPL NAP1L2 SLC1A2 COPE PRDX2 PEX5L STRAP KIF5A SEPW1 COX7C SIRPA TMX4 GRIK1 NAPB PGRMC1 SV2B ATP1B1 IPCEF1 DPP6 SNX3 HIST1H4H CCDC85B TUBB4A ITFG1 MT-ND5 UCHL1 KIF3C SERINC1 NFE2L1 PSAP SCN1A NRCAM EPHB6 PHYHIP TUBB2A EIF5A2 C1ORF233 INPP5F NDUFB8 SCN3B GAPDH THY1 EPB41L3 ITM2B PSD3 KLC1 GRINA CTNNB1 GHITM RAB1A RAB3B OR6D1P TUBA1A CMPK1 NEFM TDRD7 GPR158 GPX3 STMN3 OXCT1 ACLY MFSD6 ATP2B4 RTBDN EDF1 DUSP4 PPP3CA MAP1LC3B PCSK1N DKK3 EPS15 SLC39A10 SLC1A3 TCEB1 RHBDD2 PPP3R1 RPL13A MYBPHL RPL8 SRP14 PPP2R4 ATP11C BEX1 STK24 UQCRQ SCOC COX4I1 RRAGA NDUFA4L2 ZFAND5 YJEFN3 SYNJ1 SNCB SOD1 CYP26B1 SAMD3 ITM2C BCL11B B3GNT1 CRYM NCDN RPL15 FARSA TAGLN3 PJA2 WWTR1 TSPYL1 UBB LMO4 ZBTB18 POLR2L NME1 TGOLN2 COX6C CAMK4 SUCLA2 SCD5 NAT8L NRF1 FTL TMEM155 TBR1 RAB6B EIF4A2 HSPE1P16 UQCR11 TEX2 HTR2A PCYT2 BSCL2 CD63 MET GRIN1 RPL26 C1ORF95 FEZF2 DDX3YP1 CTXN1 MAP2K4 NDFIP1 LRP2 NDUFB2 PAFAH1B2 SLC9A6 FIBP MEIG1 C14ORF2 SYT13 TMEM258 IMMP1L KIAA1045 RAB7A GRIN3A TMEM141 RPS28 REPS2 FABP7 ZNF365 MRPS7 MAPK1 COL24A1 EFHD2 UBL5 GLIPR1 AP1S1 TAC1 NDUFAB1 MED31 COX7B AC244489.1 MRPL52 OPA1 GMFB YIPF3 NDUFA1 ETV1 REEP5 MPPED1 NDRG3 OAZ1 CX3CL1 PGK1 RPL37A PSMD12 BANF1 SLC25A6 GABRA5 CPE UBE2E3 ATP5E GRPEL1 UBC TMEM147 PSMB5 CPLX1 CYC1 NDUFAF2 SKOR1 ACP1 THSD7A PPP3CB DPY19L1 RELN RAN DUSP1 TOMM22 SUB1 HMP19 CMAS NRN1 GPX4 PRELID1 GPCPD1 HSPE1 TPT1 ACTR10 NEFL ERBB4 TMEM14A NDFIP2 DSTN MAP1A GABARAPL2 BAG4 ATP6V0B SERPINI1 POLR2I CAPNS1 RPL17-C18ORF32 STUB1 ERG RASGRF2 LMBRD2 TSHZ2 DYNLL1 WASF1 FAM3C C4ORF3 MYL12B CDK5R2 C11ORF31 CAB39 ATP2B2 RPL12 SNX10 ATP2C2 CDH13 EIF1AX MORF4L2 RNF11 NXPH2 MDH1 DLC1 ATP5J2 DYNLL2 VEGFA TM6SF1 TSPYL4 SERINC3 PTPRM WASL NWD2 ACOT7 ARL8A EIF1B NDUFC2 RPL3 SEZ6L STMN1 PNKD MYRIP AP2S1 TKT ALDH5A1 RPL17 NPTN WDR47 COL6A1 SLC17A6 APLP2 WBP11 CNTN1 C12ORF57 ERH CAMK2D FBXO8 EXTL2 KRAS ALDOA PRKAR1A BSG APLP1 CHCHD2 MSMO1 PLD3 LDB2 PCBP1 CFL1 CDK14 BEX4 SEPT4 CDKN2D CHEK1 BAD ENO1 PKM GABRQ TPD52 STXBP1 PFDN1 KCNV1 ISCU GCH1 RHEB PIN1 AES ARL1 ASAP1 RP11-20I23.1 VAMP2 PET100 COX7A2 NTN4 PNPLA5 KIFAP3 CDK17 TMEM65 ATP6V1B2 VWA5A FAM131C GRM3 HNRNPH2 VDAC3 KCNIP1 PLIN3 LMBR1 CHL1 ARF1 TMEM120A BAI2 CKB C2ORF80 REEP2 CERS6 HINT1 SYN2 NDUFB10 CDH8 RAPGEF5 ADD2 BTBD1 TOMM7 MAP1LC3A MT3 HILPDA TOMM34 RPL11 CRIM1 NDUFA12 NAP1L3 ATP6V0C MAPK8IP2 COMMD6 ATP6V1G2 GABARAP ANKRD18A SERF2 ARF5 TUBB3 NUDT4 MGST3 MIF RPL36A GTF2H2C_2 TUBB PCDHA10 PCDHA9 PCDHA4 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 KIFAP3 RAB3B CHN1 BASP1 CCDC183 GAPDH NUAK1 RAPGEF5 TOMM20 MTPN PPP3CA MT-CO1 MT-CO2 PHYHIPL LZTS1 SLC9A6 STMN3 ITPR2 NELL2 CX3CL1 FAM127A SMYD2 MAP2K2 RP11-531F16.3 CTSD MAP1LC3A SYNJ1 RPL7 FAM3C MAP2K4 NR4A2 DPYSL2 UBE2M TUBA1B PLCB1 GSKIP RPL17P50 AP3S1 GABRA1 CAMK2G MGST1 PPP3CB GFRA2 PSMC3 DCTN1 HOPX SERINC3 SUB1 TNS1 ETV5 NEFL CALM1 TMEM191A FIBCD1 CALN1 MARCKS ACLY RP11-111M22.2 ASAP2 PI4KA SLITRK1 GRIN1 CFL1 WASF1 WIPF1 ENO2 NAP1L3 NFIA PTPRN GDI1 SCAMP5 CAMK2D ATP5G1 COMMD6 KLHDC3 SV2B MAPK1 RPH3A ATXN10 IRS4 DGAT2 YAF2 NPTN HSP90AB1 C18ORF61 ATP5I NEUROD2 RPS28 FBXO2 ADSS ATPAF1 MAP1B SCN3B UTRN TPI1 CIAPIN1 PDP1 SLC22A17 ACP1 PRKACB CETN2 WSB2 WARS TLE4 LMBRD2 ESCO2 NUDT4 IDS ATP6V0C RP11-20I23.1 APOLD1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 SYTL2 RAB3B RP11-111M22.2 ZNF385D SNAP25 BIRC5 NFIA TLE4 NRCAM ARFGAP2 SYT1 ITPR2 CALM3 STXBP1 THY1 MORF4L1 RXFP1 GRIN2A GDA SCN3B PRKCB ARPP19 PCDH17 GPM6A STMN1 DCLK1 LMBRD2 TXN KCNF1 VAMP2 COL11A1 RPS4X CALM1 SLC6A1 PGAM1 OCIAD1 SARAF RPL6 GABRA1 LPPR4 RPL13 MTRNR2L1 CPE NRF1 SIRPA CAMK2D OR6D1P EGFL7 PGK1 TMOD2 RASGRF1 C14ORF132 TM2D3 RPL26 CKB TMA7 KLC1 KIF21A PIK3R1 TSC22D1 SLC17A7 DIRAS2 PSAP LMO3 TMEM200C PDP1 THYN1 CTNNA3 CABP1 CFL1 DPYSL2 MT-CO2 HNRNPA1P40 PLEKHD1 SV2B PPP2R2C NNAT PKM RABAC1 ENC1 UQCR11 ITFG1 RHEB TMEM155 NPFFR2 MAP4 FKBP8 MT-ND3 LANCL1 RAP1GAP2 TEX2 RAD23B ATP5G2 RTN4 CDK14 ITM2C LAMTOR5 CDH8 MANBAL PPP3R1 PSD3 CRIP2 SUMO2 RGCC MED10 BTBD10 FAM219A AC244489.1 GRIK3 PIP4K2A SYNPO PSMA7 GRINA LL0XNC01-16G2.1 EDN1 BEX5 GDI1 PJA2 RTN3 STX1B NEUROD2 APLP2 ROBO2 BLOC1S1 TBCA SNAP91 FTH1 EGR3 PRDX5 YWHAB TMSB4X CHP1 CA11 TUBB4B MAST3 CHGB FGF12 ZNF503 WBSCR17 RAB6A RPS15 ATP1B1 INPP5F FAT3 NXPH3 C5ORF63 ENO2 SLIT3 CBX6 STMND1 AES SNN THOC7 FASN CADM2 NDUFA13 EPS15 MORF4L2 MMP24-AS1 C16ORF13 ENSA TMSB10 PI4KA SERINC1 MRAS FABP6 PEX5L IFT52 RNF11 KRT86 LINGO1 ATP1A3 MAPK1 FBXL15 ASAP1 HSP90AA1 NPTN NDUFA1 ATP5I FKBP4 NRN1 PAQR9 SELM BCAP31 TPGS2 POLR2M ATP2B2 KIF1A AAMDC RPL13A DUSP6 VSNL1 C1ORF233 ID2 RPL36AP21 AHNAK2 PACSIN1 PGM2L1 NCALD NSF PBX3 SAP18 STMN3 ZFAND5 ATP6V0B PIN1 RPL11 HS6ST2 COX4I1 EPHB6 PREPL SPARCL1 RPS28 IPCEF1 ALDOA OPCML HRK IGSF21 IMPA2 HSP90AB1 SNRNP25 STXBP6 PCDH15 CALM2 TGOLN2 TSKU ATP6V0D1 PFDN4 YWHAZ SNCA DPY30 CDC37 SSBP3 PEBP1 UCHL1 COPRS OAZ1 ZBTB18 CMAS FAIM2 B3GALT2 DNAJB9 ADSS HINT1 MT3 TMEM191A ADAM23 TXNIP SLC12A5 C18ORF32 EIF4G2 SNRPN LRP1B IDS CACNB1 ACTG1 ALDH5A1 ATP1A1 GAPDH SEPW1 TCEAL7 ALPK1 TCEAL2 PLOD2 KLHDC3 MGST3 BEX4 TMEM59L NUAK1 PPP1CB CNTN1 TOMM70A PRKACB ADORA1 C19ORF53 VDAC1 STX1A FXYD7 RAPGEF5 ARSJ COL5A2 EIF4A2 CKLF NDFIP2 SLC22A17 AP2M1 PSMB3 TUBB3 RPL36A MIF CYB5R3 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND3 CHN1 SNAP25 MT-ND4 MT-CO1 MT-CO2 MT-ATP6 SYT1 MT-ND2 MT-CYB HSP90AA1 MT-ND1 SPARCL1 IDS CALM2 PNMA2 DKK3 CLU RPL41 RPS15 CALM1 VSNL1 TBC1D15 UCHL1 SYTL2 MAP1B CLSTN2 BASP1 PREPL ITM2B TSPYL1 RTN3 EIF4A2 TUBA1B RTN4 HSP90AB1 SYT11 SCD5 DYNLL1 GPM6A TMA7 INPP5F ACTB PLP1 VAMP2 CPE NECAB1 DPYSL2 NPTX1 YWHAG STXBP1 RTN1 YWHAB MTRNR2L1 GRIN2A GAPDH KLC1 MTRNR2L12 ACTG1 SKP1 RPL21 JUND RPL37A SERINC1 RPL13 NRGN STMN2 PRKCB ENO2 FTH1 SARAF SCN3B PIK3R1 TMSB4X OR6D1P CNTN1 DIRAS2 FAIM2 ENC1 CADM2 RAN STMN1 CTSD RAB3B ATP1B1 TERF2IP EIF1 MT-ND5 HMP19 TMEM130 CKB APP NGFRAP1 TLE4 PPP3CA APLP1 FKBP8 NDUFS5 PLCB1 MORF4L1 SLC22A17 ATP2B4 PLD3 TSPAN7 CLSTN1 SPOCK1 RPL13A PDP1 WASF1 TPPP SNCA RHBDD2 THY1 PSAP USP5 PGK1 MTATP6P1 MORF4L2 EFR3A NEFL PEX5L PAK1 NCDN YWHAZ TUBB4A TUBA4A EIF4G2 ATP6V0E2 CALM3 ATP5C1 SLC8A2 NCALD FKBP1A RPL15 RPL17-C18ORF32 RPL10A SPOCK2 CDC42SE2 PRKAR1A TOMM20 NAPB ARL6IP1 PGRMC1 HNRNPH2 GNAQ YWHAH RPL17 SV2B TBCA SCAMP5 SNRPN SERINC3 ARL6IP5 TCEB2 NELL2 CAP2 DNAJC6 FTL GPRC5B NFE2L1 FAM134A APLP2 SSBP3 RPL32 BEX4 RPS4X SYN1 DCLK1 ATP9A HS3ST4 PGM2L1 SLC24A2 OLFM1 PKM RPL35 TBR1 TSPYL4 GDI1 RAB6B BEX1 NSF CTC-575D19.1 RP11-20I23.1 ATP6V0C RPH3A KCNK1 SYN2 TMEM59L PRKAR1B HK1 FAM3C CLDND1 SNAP91 ZBTB18 FXYD7 APBB1 QDPR HSPA8 RANBP1 EFHD2 MPPED1 PPP2R2B ZNF365 AES SCOC KIF1A KCNMB4 COX6B1 PRNP EPDR1 CLGN RPS10 NEFM RPL26 OPA1 LYSMD2 HS3ST2 TPD52 EPS15 SLIT1 NGEF GNB1 PEBP1 SLC12A5 EID1 LGI3 CRIP2 RPS5 DGUOK CADM3 ATP6AP1 TM2D3 MARCKS PNMAL2 SPTBN1 LMBRD2 NUAK1 PPDPF TMOD2 PPP2R2C LDHB RAB6A SLC17A7 PIN1 KIF5A CAPNS1 OXR1 RAP2A OAZ1 RCAN2 CYFIP2 RPS12 UBA52 NHP2L1 COX7A2 UBB BNIP3 ZFHX4 GRM3 CPLX2 WSB2 ARPP19 FXYD6 MDH1 TMEM144 KIF3C CSDE1 GTF2H2C_2 COX7A1 KCTD12 HMGCS1 ATP6AP2 ID2 EPHB6 TMSB10 JUN IDI1 TPRG1L ATRN ATP2A2 STX1B VPS35 GDA RAB11A COX7C BSN ATP1A1 SNCB ABCA8 PPP2CB RP11-111M22.2 NDUFB2 BIRC5 SYT5 PNMAL1 MFSD6 TOMM7 SRP9 PSD3 CREG2 GPX4 CDC37 MRFAP1 VDAC3 PPIA OPCML INA OLA1 ATP6V1B2 ARF1 COX6C PTMA RPL12 YWHAQ AP2S1 CHGB MAP4 RPL3 RPL6 DNAJA1 DDAH1 ARFGAP2 C19ORF53 ATP5B CDK17 KIF21A RPL23A STMN4 AP3S1 TLN2 COL5A2 LMO3 NAP1L2 RLIM COQ10B MAP2K1 NDUFB5 PRUNE2 ERH GHITM RRM2B LINGO1 GCHFR NDN SEC61G NEUROD2 LDB2 NMNAT2 ITM2C PDE1A LUZP2 SAMM50 C11ORF31 NAP1L3 C12ORF57 ATP6V0B FBXL16 PCMT1 HPRT1 DRAP1 KCNA1 RASGRP1 S100A6 GRINA GPIHBP1 ACOT7 C14ORF132 PRDX3 IFT52 AP2B1 TMEM151A NDUFB3 SEZ6L2 TOMM70A NUDT21 C1ORF95 CREB5 FAM131B PSMC1 TMX4 RAB3IP ANXA6 MMD TOMM34 CRKL MLF2 GABARAPL2 CDK14 UROD CLTA ATP1A3 REPS2 B3GALT2 SEMA5A TUBB4B SNN TMEM63A CYB5R3 TPT1 DPY19L1 MDH2 DNAJC5 SH3GL2 LRP1B MAP7D2 CHP1 LANCL1 CD99L2 C14ORF2 RAB4A RASSF8 TCEAL2 TOMM22 TUBA1A ATP5A1 TGOLN2 LL0XNC01-16G2.1 PGAM1 NDRG3 MTPN PTGES3 UBC NEGR1 RAPGEF5 AP2M1 NDUFB1 RPS27A HTRA1 CHMP4B SLC39A10 SLC38A1 PRDM8 GUK1 ANLN NDUFA5 LAGE3 PCDH17 SDCBP NDUFA12 COX8A ACOT4 ATP6V1G1 RPL36A HSPB8 SEMA3A ASAP2 LAMTOR5 FOXP2 ARPC5L STK39 PEG10 PFN2 ALDOC NDFIP2 MIR6723 STMN3 TAGLN3 PIP4K2A QKI CISD1 ATXN10 GABARAPL1 SLC25A11 FLOT2 OAT ENSA GMFB RPL31 ATP5F1 SULF1 ZMAT2 CLTC FEZF2 ATP2B2 NRCAM ZFAND5 DNER HSPA4 CAPZB ATP5G1 RHEB PPA1 CRIM1 PHYHIP PHYHIPL FABP3 ARL8A DCTN1 CA11 C4ORF3 TMEM70 CHCHD2 NDRG4 PITPNA LPPR4 MTCH1 RHOB CABP1 FGF12 PRDX5 PPP2R4 UBL5 WBP2 CXXC4 C1QBP SLITRK1 IDH3A UBE2V2 MAPRE2 MAPK8IP2 DNM3 CLIP2 PPM1A COPRS OCIAD1 RFK SCN1A SLC25A4 CYCS C9ORF16 ISOC1 MTRNR2L8 TUBB2A PHPT1 PPP2R1A SYT4 EDIL3 CRYM CSRP2 ABHD8 PRIM1 NCBP2-AS2 POMP SERP2 STRAP ANKRD20A11P BAD RUNX2 CNP SNAPC5 CLIP3 SUMO2 COX7B TP53I11 ITFG1 DPP6 SYT13 SYNGR1 PTPRN CBX6 PNMA1 EGR1 MAST3 PFKP TSPAN18 LDOC1L RSL24D1 PMEPA1 UHMK1 UBE2D2 WIPF1 VDAC2 NHP2 SLC25A22 DLC1 PSMD12 EGFL7 MT3 CAMK2N2 COX17 SLC9A6 MAGEH1 BANF1 KCNAB2 SULF2 EHD3 PRKACB CFL2 SUCLA2 CMAS AC010731.4 AP1S1 RRAGA MAP2K2 DNAJB6 NPTX2 CFL1 PJA2 CHMP5 NARS COX4I1 SPRYD3 NDFIP1 MAL2 CNRIP1 PPP3CB MMP24-AS1 C16ORF13 ENO1 MTRNR2L6 MAP2K4 SYNJ1 LIG1 SRM CYC1 TPGS2 NRAS SIRPA RNA5-8SP6 VDAC1 COX14 HAPLN4 COX5B RAB3C SYNPR CLPTM1 TSC22D1 ANXA7 C1ORF52 MAPK1 BAG4 LRRC53 WARS MAGED2 MTHFS MBP WDR47 PPP1CB ARL1 CAMK4 MIF RPL38 ATP5J NDUFV1 ATP5G2 ATOX1 NKX6-2 CADPS2 NGRN FAM96B LAMTOR2 ARHGAP6 BIRC3 NRN1 CDKN2D MRPS21 ZFP36L1 GAP43 NAA38 IPCEF1 RNF11 PRPS1 MYL12B ATP6V1E1 CDK5R2 SLC1A2 B3GNT1 MRPL37 GABRA1 NDUFB8 RPS6 AHNAK2 MSMO1 UQCR10 PDGFRA CAMK2G EIF1AX SPCS2 EVI2A SERF2 ALDOA RNASEK-C17ORF49 ATP6V1G2 RP11-219A15.1 PCDHGA6 PCDHGA10 PCDHGA5 BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 CHN1 SYT1 SNAP25 MT-CO1 MT-ND4 MT-CO2 PRKCB CALM2 GPM6A RTN1 MT-ATP6 NRGN MT-ND3 ATP2B2 VAMP2 SLC24A2 PRNP ITM2B PJA2 MAP1B TSPYL1 MT-ND2 APP SEZ6L ACTG1 ENC1 MT-ND1 NDRG4 SLC1A2 NFIA MTRNR2L1 KLC1 PGM2L1 THY1 RTN4 BEX1 EIF4A2 STMN2 TSC22D1 YWHAZ NRCAM NDFIP1 DIRAS2 DKK3 CALM1 APLP1 NR4A2 SCN3B GRIN2A ATP1B1 NDFIP2 MTPN CLSTN1 PCDH17 DYNLL1 LPPR4 SEPW1 TLE4 STXBP1 TSPAN7 ATP2A2 CPE HSP90AB1 OXR1 RTN3 SCAMP5 PRKACB TMEM59L YWHAG CX3CL1 SARAF GABRA1 MTATP6P1 SYTL2 PET100 SNAP91 PEBP1 YWHAH SERPINI1 NGFRAP1 SPARCL1 NGEF CAMK2D TUBB2A BASP1 LMBRD2 ATP9A TSPYL4 SV2B PPP3CA SH3GL2 RAPGEF5 SNRPN COX5B RPS28 TBR1 ZFAND5 NPTN TAC1 PSD3 TOMM20 MAPK1 BEX2 SYN2 KIF1A NPTX1 SLC17A7 VSNL1 DCLK1 RGS4 TUBA4A STMN1 CLU ACTB CDK5R1 MTRNR2L6 TESPA1 ATP6V0C UBE2QL1 PSAP SUMO3 CERS6 NELL2 ARPP19 FAIM2 ASAP1 CADM2 CCT5 ITPR2 ELAVL4 SSBP3 ATP5B OAZ1 PKM CFL1 ATP6V0E2 HMP19 RFK PIK3R1 BSCL2 TCEAL7 CAMK2N2 RAB3A RP11-20I23.1 SRP14 TUBA1B SUMO2 LINGO1 MAP4 IDS RASGRP1 RPL41 CDC42SE2 SKP1 FSCN1 FGF12 PLCB1 CDK14 RAP1GAP2 ATP2B4 AK5 STMN3 PNMAL2 KLHL5 MTRNR2L12 EGR1 PPP2R2C PRKAR1B ATP6V1B2 ARL6IP5 FAM198B REEP5 PDP1 WASF1 RAB3B PCDHGA5 CTBP1 TBCA ATOX1 CAP2 CREG2 TMSB4X NXPH3 ARL8A GDA ZBTB18 EHD3 C14ORF2 GNAQ VWC2L NEUROD2 ADIRF COPS8 ATRN RNF208 TSPYL5 SLITRK1 DLC1 CEND1 CSDE1 SUB1 GTF2H2C_2 SULT4A1 TGOLN2 SEZ6L2 UCHL1 LDHB PREPL RHOB KCNF1 DPP6 RPL32 SLC25A6 ATP6AP2 INPP5F NUAK1 PAK1 DDAH1 SAP18 MDH1 EFR3A MT-CYB GABARAPL1 SPCS2 NCAM2 SLC6A17 NDUFA1 ATP6V0B RPL13A MAGED1 HOMER1 FXYD6 SERPINE2 ARL6IP1 TMEM14A RAB6A PCSK5 NR4A1 RP11-111M22.2 UHMK1 PDE1A NELL1 SCN1A UBC GRINA CDK17 NARS ATP5I CCK RAB2A RPL15 PNMA2 MT-ND4L TCEAL2 REEP2 MRAS PGAM1 GDI1 GOT1 HK1 CLIP3 DPYSL2 PRKAR1A MT-ND5 VWA5A GUK1 MAPRE2 SYN1 TCEAL5 ATP6AP1 C19ORF70 PRKCE NHP2L1 PRKCG SMIM13 NAPB CPLX2 ITFG1 OLFM1 SYNGR3 TERF2IP FTL CAPZA2 LANCL1 B3GALT2 GRIN1 MYEOV2 CDK5R2 TBC1D7 MGST3 HSP90AA1 SYNJ1 HINT1 CKB APLP2 ENSA GPR158 NUDT4 ENO2 CABP1 CHGB ETV1 CALM3 TMEM65 ERH RAB6B TCEA2 STX1A FAM3C HMGCR KCNA2 ROBO2 SNCA NREP TMEM130 TMX4 LMBR1 NR1I3 ALDOA NSF BIRC5 NGRN ARFGAP2 GAP43 DPY19L1 GFRA2 DMTN AP1S1 LGI3 IGSF21 PMEPA1 WBP2 C16ORF13 SLC38A1 HSPE1 CCDC115 NRIP3 MPC2 DNAJA1 HSPA8 YWHAQ CCDC152 RNF11 FXYD7 CPLX1 SNX3 GRPEL1 RPL38 PEF1 NAP1L3 KCNA1 UBA1 SLC39A10 AZIN1 PLD3 OCIAD1 DNER SH3RF1 KCNC2 SLC7A8 TXNDC17 REPS2 PAPPA ARHGAP35 SERF2 GOLIM4 CHCHD2 FILIP1L MGST1 HMGCS1 CYFIP2 SYNGR1 WSB2 SPDL1 DDN CPNE4 MDH2 KCNH5 NEUROD6 NPFFR2 PNKD CAMK2G RAB11A PTGES3 CAMKK2 SLC9A6 ITM2C BTBD1 STX1B RPS10 CAMK4 TMEM141 HBQ1 ATP5A1 RAB3C CLTB SLC7A5 DNAJB6 UBE2E3 ACTR1A PSMC3 PI4KA EDNRA MYL6B NEGR1 TRIM37 COX17 ATP5G3 KIFAP3 GNG2 HBA2 GABARAPL2 PSMD2 ATP6V0D1 PPP3CB KIF21A HILPDA STRAP LMO3 COL24A1 CLTC BAG4 HTR1F JUND POLR2M GYG1 TPGS2 MAP1A GRIK3 UBQLN2 ATP6V1E1 PPP2CB OPA1 LDB2 TUBB2B NDUFA4 MLLT11 SPOCK2 CADPS2 SERINC3 PHYHIP SLC25A5 LYSMD2 MAP1LC3A C20ORF24 BCAT1 ATP6V1G1 GPX4 MAPK8IP2 PARM1 ANXA7 KIF3C SRD5A1 SCOC RAP2A RPL11 EGR4 PRDX5 PTPRN SEMA3D APBB1 ADAM23 NDUFA11 ATP5F1 TMEM155 MORF4L2 DNAJB9 SOX9 CMPK1 FSTL5 KIAA1045 MARCKS NCEH1 BNIP3 GPR88 ARL8B FAM131B TPI1 PFN1 CMAS PIN1 HNRNPH2 HPRT1 TMEM151A DUSP4 NIPA1 NECAB1 CORO2B CA11 NDUFS5 OLA1 SOD1 SCD5 BCAP31 ISCU GPCPD1 PTCHD4 SELT NINJ1 PRDX2 GPR37 EIF1B FBXW11 SLIT3 RBM20 OXCT1 ADSS SYT13 RPL37A SLC22A17 ENO1 MLF2 RPL21 GABRA5 GMFB LIMK1 OPCML CD99L2 GPR132 TMEM35 SERINC1 KIF5A ARL4C WBSCR17 KLHL12 GNB1 C19ORF53 GHITM ZNF503 EPB41L3 NDRG3 ANO3 FILIP1 SYT3 PPP1R9B DNAJC4 RPL18A TRMT112 GRM3 ATP1A1 ATPAF1 HPCA CNIH3 RPL35 RARRES2 SLC38A11 CDH8 ATP5J2 LAMA4 ATXN10 PPP1R7 CCDC85B APEX2 RHEB DNM3 C2ORF80 UQCRH SUCLA2 MAPRE3 PCBP1 PCDHA4 SNCB MUM1L1 ALCAM ELMO1 ADD2 MIEN1 TUBB4A PAM COL9A1 MAST3 NAT8L SPTBN1 FABP5 B3GNT1 CBX6 CNTN1 DUSP6 COX5A ISCA1 ETV5 PEG10 USMG5 SSTR2 HFM1 EIF4G2 LAP3 DNAJC6 UTRN MTX3 TPT1 TMEM230 C1ORF115 SYT11 FAM43B PFN2 POLR2J AP2S1 PPP1CB PPP2R1A TUBA1A FABP3 RAB40B ABHD8 CDHR1 PGK1 LHFP GUCY1B3 SNN ADORA1 UROS RGS12 LINC00116 DYNC1I1 FLOT2 EIF1 NAP1L2 TOLLIP ASB13 RPL26 MAP7D2 HTR2A AP2M1 FKBP1A PPIA CCND1 HIGD1A CNTNAP5 SUSD4 TPRG1L WLS COX6B1 ATP6V1A MZT1 SCG2 SUMO1 NMNAT2 GOT2 SEMA3C KCTD12 BEX4 CAB39 FAM43A SLC25A11 TLR5 TBCB YWHAB NDUFB10 ATP5J RPL13 SDK2 GAPDH UQCRB C7ORF50 DYNLT3 SH3BGRL3 ATP6V1G2 AC244489.1 CFH RPL17 RPL17-C18ORF32 TUBB RPL6 C11ORF31 MBOAT7 C1D MIF TF TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 TSPAN7 RTN1 MTRNR2L1 SYT1 MT-CO2 CALM1 GPM6A MTRNR2L12 MT-ND4 SLC24A2 MTRNR2L8 RTN4 ATP2A2 ACTB MT-ND1 ATP1B1 SNRPN CPLX2 DIRAS2 EIF4A2 RTN3 TMX4 MT-CO3 PPIA ATP1A3 MTRNR2L6 DCLK1 EFHD2 CFH PTMA KCNIP1 APLP1 TAGLN3 APP PPP3CA KIF21A NAP1L3 SNCA CALM2 TPT1 VAMP2 CEND1 SERINC1 IQSEC1 RGS4 FAIM2 PCP4 MAPRE2 ADD2 RPL41 ARHGAP35 UQCRQ TERF2IP COPG1 CFL1 PRKAR1B PGM2L1 STX1A UQCRH MFN2 ZFAND5 PIK3R1 GAPDH OAZ1 C1ORF95 BASP1 ZBTB18 RPL10A HINT1 SARAF SV2B PPP2R2B TLE4 PSMD8 PRKCB PLCXD2 PEX5L PNMA2 CLSTN1 SUCLA2 ETV5 DNM3 MARCKS COX8A PCDH17 SLC22A17 KCNAB1 DPP6 LMBR1 ETV1 GNAQ SPOCK1 IMMP1L CAMK4 INPP5F PACSIN1 RBX1 RPL26L1 ARF3 RPL35 GDI1 USMG5 SERPINI1 NDFIP1 GRM3 SPTBN1 COX6C STXBP1 DNAJB6 DYNLL2 NEGR1 PCDHA4 TLL1 TRHDE NREP CITED2 GABARAPL1 UBL5 RPL7 EPB41L3 SUMO1 NAP1L2 CDK14 WASF1 RPL31 PEBP1 KAL1 SYT13 MT-ND2 COX7C NDRG4 YWHAG ITM2C LRP1B CDH13 MAPK1 TIMP2 DNAJC6 GABRA5 SCN1A SH3BGRL3 PRKACB TUBB2A FXYD6 NXPH2 ALCAM DNAJC21 TF ZNF385D SMYD2 CHRM2 ATP2B2 ATP5H PRKCG ROBO3 D4S234E MTCH1 CACNB1 DKK3 PTPRN2 ATP6AP1 HSPA4 TUBA1A TOMM7 WASL LDB2 TMSB10 RPL37A GUCY1B3 HPRT1 THY1 CLU ITFG1 RAB37 NCAM2 CABP1 NPTXR FOXP2 CAP2 GLIPR1 PNMA1 ETS2 RPL32 YWHAZ TLN2 LDHB TMA7 NUDT21 SYNPR UCHL1 LYNX1 RNF11 HSPA8 IGFBP6 KLC1 PSMC1 FEZF2 CYCS MT-CYB MTG1 PCSK1N KIF5A C12ORF49 PI4KA GHITM TMSB4X KCNH5 TMEM130 NUTF2 BEX4 SEPT4 IPCEF1 STMN3 FTL LZTS1 SIRPA CHL1 PHYHIPL ARHGAP29 SNX10 PPP2CA BCAP31 HPCA UQCRC2 CDK5R1 GRIN1 IDS DPY30 CALCRL TPPP PNKD PBX3 ENC1 LINC00087 NDFIP2 PLCB1 DLC1 CDK5R2 RP11-632C17__A.1 CPLX1 GDE1 CDC42SE2 OPCML PPP2R4 CPE ATP6AP2 NDUFB8 BCL11B RAB5C RPL8 SLC38A1 DNAJA1 RAP2A EPHB6 SKP1 APLP2 SULT4A1 TUBB4A PFKP EPS15 CSDE1 WARS VAMP1 PSMC3 RPL15 TOMM34 SELT NRGN ATP6V1C1 KCNK1 C16ORF13 SCN3B NXPH3 RAB2A TMEM151A ISCU LUZP2 PRNP DLX1 COA3 PPP2CB NRN1 ATP5E HDAC1 PTGER3 SPRN SLC6A17 PSMD12 HMGCR MAGED1 VWA5A VSNL1 ARL6IP1 SLC1A2 YWHAB VDAC1 SUB1 FAM127A TSHZ2 BNIP3 TMEM35 NCOA4 FABP7 NGFRAP1 NDRG3 ATP1B2 KCTD12 HMGCS1 SH3RF1 DPYSL2 RAB3C POMP CAPZA2 TCEB1 ALDH5A1 SKAP2 PPP2R1A NECAB1 PKM RP11-345J4.4 PAFAH1B2 FAM86EP KIFAP3 INA CDS1 RHOB FAM131B C1ORF52 WLS CAMK2N2 STUB1 AK5 RAB1A MT-ATP6 CRIM1 ACTG1 PJA2 WBP11 GPRC5B SEC61G PTPRM PVRL1 KRTCAP3 LHFPL3 NDUFB3 PDZD11 SCG2 CKB KCNF1 PRKCE DPY19L1 TXN BIRC5 NMNAT2 COL11A1 SLC12A5 GRIN2A CADM3 AP3S1 PELI3 ATP6V0E2 YWHAH HOPX UQCR10 STX1B QDPR BANF1 PSAP UBC TUBA4A ASB13 GSTT1 STMN2 SRM GYG1 ANO3 TPI1 C1QBP TMOD2 UQCRB TUBA1B CLDND1 HOMER1 TCEAL2 ARL2BP SEPW1 SLC17A7 MORF4L1 RFK GABRA1 ATP5A1 MAGEH1 GPX4 STMN1 RPL12 PARM1 P2RX6P ADAM23 UBE2V2 EIF5A2 GUK1 SEZ6L2 HTR2A HSP90AB1 GOT1 VDAC3 C1ORF115 TMEM155 PIN1 SYN2 NDUFB11 CRYM MAP1B MAP2K1 FTH1 UBA52 RAB3A FASN SPOCK2 RPS4X ARPP19 SOD1 B3GALT2 MRPL47 ASAP2 GLRA2 PPP1CB BEX1 PELI2 NSF ZMAT2 NAPB PGK1 FGF12 SPARCL1 BSG SEZ6 HSP90AA1 SCD5 BTBD1 RPRM TPD52 CHI3L1 HNRNPA1P40 TUBB3 ALDOA C11ORF31 OR6D1P RPS15 ARF5 GABARAP RPL21 RPL13A RPS3A PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RAB3B MT-CO1 CHN1 BIRC5 TUBA1B ZNF385D NR1I3 RP11-111M22.2 CLU MT-ND2 TMSB10 DPYSL2 MT-ND4 PRKCB MT-CYB LMO4 SYTL2 CALM1 USMG5 SYT1 CALM2 MT-ND3 OR6D1P GAPDH TMSB4X GRIN2A UQCRH SPARCL1 TUBA1A RPL39 NDUFA13 RPL26 STX1A HOMER1 MAP1B ATP1B1 PLCB1 LAMTOR5 NECAB1 SIRPA EIF4A2 MT-CO3 STMN2 TSPAN7 KIF21A MT-ATP6 THY1 HNRNPA1P40 YWHAB BAI2 TOMM20 SEPW1 PET100 EPDR1 FXYD7 YWHAH STXBP1 NDFIP1 SLC17A7 ATP6AP2 SLC9A6 BCAP31 RPS26 SYNJ1 LINC01296 ATP6V1E1 ATP5F1 SNCA RPL41 OAZ1 FXYD6 RPL6 UCHL1 GPM6A TOMM7 NPTX1 CTSD TMX4 GUK1 SCAMP5 ENC1 MTPN RTN4R UBB COX7A1 RTN4 BEX2 ENO2 KCNC2 NGFRAP1 PFN2 SCOC TMEM59L CPE SULT4A1 AP2M1 PRKAR1B LYNX1 MT-ND1 CFL1 IDS GDI1 ELMO1 GAP43 PNMA2 BSCL2 TAGLN3 MT-CO2 ATP6V0C SUB1 ATP1A1 ACTR10 RPL35 COX7C RP11-20I23.1 CA11 NRGN RTN3 VAMP2 AP1S1 RPL7 CCK CFH PGK1 CHGB GGT5 FAM219A ATP5I TUBD1 CALM3 NREP GDA HIGD1A TUBA4A USP5 SMYD2 YWHAG DYNLL1 SNAP91 TENM1 MRPS21 MORF4L2 SARAF LMBRD2 ATP6V1A LMO3 PIN1 LCNL1 SSBP3 EIF4G2 SNX10 NFE2L1 AP2S1 GNG2 CREG2 UBC DMTN ATP1A3 ANGPT2 PPP2R1A SPCS2 GHITM COX6C PRELID1 PLP1 DDN PAFAH1B2 BNIP3 FTL DDAH1 CABYR FTH1 RTBDN NDUFS5 NAT8L APLP2 RLIM SNX3 GPX3 TMSB4XP4 PLCXD2 C14ORF2 APBB1 CAMK2D PPP2R2C TLL1 UBL4A WSB2 HSPB8 VDAC1 SEMA3C FASN RXFP1 TOX2 KIF1A SUMO2 PNKD CDK5R1 MFN2 TPT1 ACOT7 TMOD2 BLOC1S1 ATP5A1 EDF1 ATP5J2 CAB39 PRNP SPATA13 CKB PSMA7 TOLLIP NNAT CSDE1 NDUFA1 CDK5R2 RPL15 PAK1 RPL13A TBR1 PDLIM5 TCEAL2 RELN NAP1L5 BTNL9 RELL2 OPA1 SLC7A8 EFHD2 PRKAR1A DCLK1 TCEAL7 NMNAT2 ATP5G1 MLF2 MAP1A ACTR6 CXXC4 NDRG4 OLA1 CLIP3 RPL31 OR2X1P SUSD4 ELAVL2 LL0XNC01-16G2.1 SERPINE2 KRAS PDZRN4 COL11A1 KLC1 ESYT1 KCNAB1 TRPV2 CLSTN1 MAP1LC3A TSPYL4 NFIA CDS1 PCYT2 NEUROD6 TMEM70 KCNC3 OCIAD1 HK1 LAMA4 AP1S2 PSD3 FAM96B RPS5 RPL7P49 DKK3 YWHAZ OXR1 ROBO2 KCNAB2 CLTA PPP2R4 COL9A3 PPIA RAB27B HTR4 MAP4 SYT4 NAPB MAP2K4 NDUFB5 LINGO1 EIF1 NDUFB2 VGF B3GALT2 RPS15 OLFM1 CACNA2D2 NGEF TMEM150C SLC12A5 OPCML NRCAM COX17 RPL23A SNRPN RTN1 VPS35 SEPT4 RPL13 C16ORF93 TMEM179B COX7A2 SCN3B SMS MARCKS PHYHIP HTR2A NDUFAB1 AHNAK2 ACTB PLAUR ADD2 COX7A2L INSIG1 C11ORF31 RPL21 CADM2 ATP9A SERINC1 PKM TRAPPC1 NHP2L1 HPRT1 ATP5J PCSK1 RPL38 ACTG1 ZNF350 NPTX2 CLDND1 PEF1 NRN1 CST3 KIAA1045 PJA2 SEPT1 ATP6V1C1 REEP5 SRD5A1 CMPK1 CABP1 COX14 CACNG3 TM6SF1 SLC6A17 C9ORF16 MAPK1 YIPF1 SYNPR NDFIP2 CADM3 PITHD1 PRKACB DCTN3 STMN1 CIAPIN1 TUBB4A NDUFV1 PCMT1 MTRNR2L12 GNAQ CPLX1 NARS SLC38A1 PCDHGA6 ANKRD18A IMMP1L RPL32 RASGRP1 GUCY1A3 HBA1 KIF5A CACNB1 ISCU SV2B ETS2 WBP2 DHCR24 VSNL1 PSMB5 ELAVL4 TMTC1 NELL1 PCSK1N UBE2D2 LRRIQ1 PEBP1 CHRM2 ARF5 TEX2 TNS1 RPL36A PRUNE2 SYT13 NEFH CAMKK2 UQCRC2 PRSS3 DYNLRB1 AC244489.1 RPL17-C18ORF32 NGRN RNASEK-C17ORF49 PPP3R1 RPL17 B2M\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 GPM6A MT-ND4 CALM2 MT-CO2 TBC1D15 SYT1 RTN3 MT-CO3 TSPAN7 ATP1B1 RTN1 HSP90AB1 MTRNR2L1 MT-ATP6 MT-ND3 CHN1 CPE ARPP19 DKK3 NPTX1 MT-ND1 TUBA1B RAB3B RPL36A RPL38 CALM1 MTATP6P1 APP THY1 CKB MT-ND2 NAPB EIF4A2 ATP2B2 MAP1B ATP2A2 RPL31 PPP3CA CLU PREPL SERINC3 DIRAS2 NRGN TMSB4X PGM2L1 NDFIP2 YWHAB KLC1 SCN3B ITFG1 SYN2 PRKACB RPL32 YWHAZ NEGR1 MAP2K1 PFN2 OLFM1 SERINC1 CDK5R1 PNMAL2 SLC39A10 MAST3 ATP6V1A IDS SLC17A7 LMO4 YWHAH VSNL1 TMSB10 SCD5 ATP6AP1 UQCRB SYT11 MAPK1 RPL41 PNMA2 RPL37A PIK3R1 DYNLL1 PCDH17 PJA2 NECAB1 ATP1A1 TOMM20 CNTN1 FAIM2 LMO3 NEFL SPOCK1 RPL12 RP11-111M22.2 CFH FAM127A CAP2 TLE4 RAB3A PEBP1 SNCA PPP2R1A RPL7 SLC22A17 CTBP1 ATP6V1F MTRNR2L12 LRP1B SULF1 EID1 GAP43 GABARAPL1 SPARCL1 PRKCG RPS26 PINK1 NDUFA4 PACSIN1 CADM2 ARL6IP1 SULT4A1 SLC8A2 OAZ1 PTPRN AK5 MORF4L2 TPD52 SLIT1 TMOD2 FXYD6 ITM2C ELAVL4 RAB6B NDUFS5 NDFIP1 ATP2B4 NAP1L2 DCLK1 CFL1 WDR47 CSDE1 TGOLN2 TOMM7 CDC42SE2 TENM1 RPS3A YWHAG NCALD MPC2 CLSTN1 OPCML SYT4 MORF4L1 PEX5L FIGN TMEM59L PRNP BEX1 FOXP2 TUBB4A CALM3 RAB11A ATP6V1E1 AC244489.1 MTRNR2L6 TPRG1L TSPYL5 UBE2M PHYHIP PTGES3 RPL6 GDA CLSTN2 SOD1 GUCY1B3 KIAA1045 BAI2 PRKCB WASF1 STXBP1 RPL13A STMN1 RPL8 ATP5E ETV1 STX1B DNAJC5 SIRPA MFSD6 MRPL20 HMP19 ITM2B PGRMC1 CALCRL UCHL1 ATP5B UQCRH GRIN1 SUB1 SKP1 NCDN RPS12 RPL39 MAP2K4 RP11-20I23.1 EIF1AX CDK5R2 NRN1 PPP1CB UQCR11 EDF1 ATP6V0E2 NRCAM PRDX1 COX4I1 UBB MSMO1 PDE1A BEX4 FBXL16 CTSD SYT5 FAM3C PHYHIPL ZBTB18 SEZ6L PCMT1 PSAP MTPN PPDPF TAC3 TAGLN3 PCDHGA10 VAMP2 GSTO1 PDCD5 EFHD2 OXR1 RPS28 CLDND1 RPL23A INPP5F ACTB APLP1 CYFIP2 GNAQ OLA1 ARF1 PNMAL1 CDK17 MMD SUSD4 ARF3 GNB1 RPL26 MAP1LC3B RPL11 ZFAND5 NEFM OCIAD1 RPRM DIRAS3 ADAM23 CTC-575D19.1 STMN4 BASP1 SLC12A5 PDP1 PEA15 CLTC SSBP3 SPRYD3 IPCEF1 TERF2IP ATP5O PET100 SLC1A2 GRINA IL10RA PSD3 ARPC5L PTMA TUBA4A RPL15 KLHDC3 CABP1 RPH3A PLD3 GDI1 KCNF1 SNAP91 BNIP3 GHITM GAPDH ELAVL2 NCEH1 PPIA NELL2 ACTG1 ATP6V0C SEPW1 MANBAL NDUFC2 CNR1 JUN SYNGR3 RPS6 ARL6IP5 TF ESCO2 RPL17-C18ORF32 RPL17 ATP6V1G2 ARFGAP2 CHL1 FKBP8 AP3S1 PRKCE ADSS OAT SNRNP25 STK31 TRAPPC1 UBQLN2 PAM MAP4 AES AP2M1 TRPT1 PTK2B SUCLA2 ANKRD18A NDUFB1 JAKMIP1 DRAP1 CDH8 RNF208 REPS2 MAP1LC3A ADAMTSL1 EPS15 ATP9A THEMIS2 UBE2E3 VAT1L HINT1 SUMO2 MT-ND4L PAQR9 SOX4 TUBD1 ATP5J DNAJA1 MTX3 PPP3CB NFIA ATP6V1B2 BAG4 HRK MPPED1 ACTR10 FILIP1L PITHD1 MTCH1 RAP2A RAB2A DYNLL2 TMX4 RSPO3 BEX2 CMAS SSTR2 COX7C FKBP4 RPS10 FAM84A ZMAT2 KIT PCDHA9 MLLT11 TMEM147 COX14 UROD PPP2CB ARL1 REEP2 TMEM120A RNF11 MAP2K2 SLC9A1 RGS12 CPLX2 HOMER1 CAMK4 PRUNE2 WSB2 NDUFAF3 INSIG1 IGSF21 NDUFB3 HS3ST4 TIMP2 SCAMP5 COPS7A PNPLA5 GOT2 SARAF RTN4 ENC1 ANXA7 PANX1 SNCB NGEF TCEAL3 C18ORF32 TBCB KIF5A GPATCH4 RPS27A IMMP1L GNG3 IQSEC1 DDAH1 NDRG4 APLP2 TMEM191A RPL13 BCAP31 PI4KA NUDT13 SRD5A1 UBA1 DEXI DYNC1I1 CDK14 ANAPC11 GMFB SMYD2 PNMA1 SYNGR1 SLC9A6 LMBRD2 AC011043.1 UBE2QL1 CA11 TMA7 PELI3 NDRG3 SERP2 B3GNT1 SLITRK1 DNM3 GABRA1 PPP3R1 PPP2R2B KCNH5 SRP14 NPTN LRMP CDC37 LRRC59 WBP11 SPDL1 CETN2 TSPYL4 MRVI1 ERH NCOA4 PSMC5 NPTXR DYNLT3 CTNNB1 TOX SRP9 SNX3 LSM4 NEK7 ENOPH1 NFE2L1 MAPK8IP2 PAK1 USMG5 ATP1A3 SQLE C2ORF80 DPYSL2 ABHD14A MAGED1 ETS2 BCKDK PHB KIF21A FASN NGRN ENO2 VDAC3 LDOC1 TPT1 SYN1 FTH1 TLN2 EPHB6 KLF10 VAPB SH3RF1 SRM FKBP1A MME RAB1A TOMM70A EFR3A LINGO1 STMN2 PTPRN2 STX1A PHPT1 CDKN2D DNAJC6 CRIP2 CIAPIN1 FABP5 DIRAS1 NNAT METTL7A PTGER3 RPL35 FAM219A CYP26A1 PRKAR1B TMEM130 CD59 EPB41L3 FARSA FEZF2 NAP1L3 MRAS MRPL51 IDI1 LINC00086 NDUFB7 C9ORF16 TCEB2 ENO1 YJEFN3 INA SH3GL2 ARL8A PTPRS ATOX1 ELMO1 KCNAB2 ATP6V1C1 RPS4X RCAN2 CAMK2D DHCR24 CAPZB ANO3 PKM MAPRE3 PPP1R7 RAB40B RAP1GDS1 ASAP2 MT-CYB CCDC85B SEC61G SYT6 BSG PID1 SLC6A17 MYO16 PPM1A GPX3 TSC22D1 DACH1 SNN PGAM1 CX3CL1 KCNK1 CYP26B1 SNRPE ATP5A1 PFKP GPX4 PTPN20A FAM134A TMEM230 MYRIP CNTNAP3 FILIP1 RGS4 RASGRP1 MAL2 HN1 CAMK2G SEMA3C YAF2 CAPNS1 DNAJB6 HSP90AA1 NRF1 SAP18 NUDT4 CD63 BTBD1 ALDOC TOLLIP WASL SV2B BTBD10 COPG1 PGM5 HNRNPH2 CACNG3 CMPK1 GJD2 NDUFA12 CAV1 TXNDC17 CEND1 SLC7A8 RAB3IP NXPH3 MRPS28 RRAGA ATP6AP2 TCEB1 MRFAP1 BAALC TNFAIP8L3 UQCR10 C1ORF95 UHMK1 TSPYL1 CHGB SDHAF1 MAGEL2 C16ORF13 ETFB MTRNR2L8 C19ORF10 NCAM2 PLCB1 CLPSL1 NREP SERPINE2 TGM2 SNX17 RP11-195F19.5 SNRPN GPR158 NRSN2 COL5A3 RRM2B ABHD8 GRIK3 PEG10 ALDOA RPL3 GABARAP RNASEK-C17ORF49 RPL18A MBOAT7 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B OR6D1P ZNF385D PSAP ESCO2 IPCEF1 CALM3 NDFIP1 RTN3 HNRNPA1P40 SNAP25 CDK5 ATP2A2 COL24A1 THY1 ATP6V1B2 PRNP PHYHIPL DKK3 TAGLN3 MAP1B NEGR1 GABRA1 CYCS RTN4 RPS28 UBA1 CX3CL1 ATP9A FAM219A PPP3CA TLE4 PCDHA4 ATP1B1 APP HSP90AB1 NRGN DPYSL2 DGKG PPP1CB CAMKK2 MT-CO1 PSD3 TESPA1 REEP2 SLC24A2 RGS4 SEPW1 PCDH17 IGSF21 KRAS ATP5J2 SERF2 SYTL2 NR1I3 PFN2 SNRPN MPI MT3 HOMER1 OXCT1 PLCB1 SMIM13 ETV5 COX7A2L CLTC C6ORF1 SEC61G STUB1 NDUFAF3 SPOCK2 RAB27B NEFM PPIA FRMD4B AHNAK2 CHN1 NGFRAP1 CYFIP2 DYNLL1 BCL11B EIF4G2 UQCRC2 GUK1 NXPH2 NDUFB10 SLIT1 RPS12 HS3ST4 FIGN CCDC124 SLC25A5 FAM84A RASGRF1 PLOD2 AP3S1 PEX5L BAALC CFH PPP2R1A SYT11 LRP1B ATP6V0E2 TTC23L CLPTM1 SCD5 HNRNPH2 VSNL1 GDI1 SPARCL1 MT-CO3 TM2D3 ENC1 SLC25A22 VAMP2 FIBP CAMK2D CLTB LMO4 GRIN2A CAMK2G RPL3 CLSTN1 C19ORF70 MRPL55 MAPK1 PLP1 GPM6A TUBA4A NSF NUDT21 PITPNA TUBA1B SYT4 SPON2 PRKACB RGS12 STMN2 FKBP1A PREPL SEMA5A CEND1 STXBP1 DNAJA1 FAT3 IFI6 HMGCR CLIP3 LUZP2 SEMA3A SLC17A7 SCN3B CPLX2 MAGED1 MT-ND4L ASAP2 PRKCB NDRG3 NDUFB7 STMN4 CLU MAGED2 SERPINE2 PPIH NAPB CLSTN2 ARPP19 PPP2R4 PNMAL1 TM6SF1 SULT4A1 PNKD HK1 COX6A1 UBB ASAP1 ADAM23 KCNK1 FNDC4 MTG1 ATP6V0B AK5 CALCRL CPE SKP1 RPL37A CAMK4 NCDN RAB6A WDR47 FOXP2 FBXO2 TUBB4B RPL31 INPP5F MAP1A RPL26 RHEB PLAC8L1 SYT1 ARSJ RPS3A ATP5I OXR1 EPB41L3 PEBP1 RPH3A GPR126 CALM2 RPS15 NFIA C1ORF115 WASF1 GOLIM4 SOX4 UBE2N SLC39A10 NDRG4 MDH1 PAFAH1B2 RAB11A COL12A1 COX7A1 FTH1 BEX1 MT-ND4 PRDX2 C16ORF93 SRP14 PSMD2 ANKRD18A PTPRN2 NDUFS5 SV2B NRAS SERINC3 SOD1 EIF4A2 MAPRE2 CARTPT NR4A1 RTN1 RPL12 PDE1A RPS2 ACTB NUDT4 HBA1 HBA2 RP11-20I23.1 RPL41 ATP6V0C RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 RAB3B MT-CO2 SNAP25 MT-CYB MT-ND1 MT-ND3 TBC1D15 MT-ND2 MT-ND4 CHN1 MAP1B CALM1 RPL31 MT-ATP6 THY1 MTRNR2L1 RP11-111M22.2 RTN4 SYTL2 PLD3 RPL41 PEX5L SYT1 GRIN1 CABP1 FTH1 APP TF RPS4X CALM2 RPL32 SMS LMO4 BEX2 CREG2 HSP90AB1 PHYHIP RPL38 CTNNA2 PFN2 NECAB1 YWHAZ RTN3 RPL35 GDI1 MTRNR2L12 PIK3R1 GSKIP CCK SEZ6L2 SNX10 ATP9A TSPYL1 KRT17P6 SYPL1 RPS3A CLU APLP1 CKB FBXL16 IDS PRKCB DCLK1 ATPAF1 RPS28 UHMK1 CHMP4B PDP1 PREPL OCIAD1 NAPB CAPZA2 SLC9A6 ENC1 FAIM2 FSCN1 CDK14 ATP1A1 PI4KA PRRX1 UQCRC2 NDUFB5 MRPL51 SLC24A2 PNMAL1 TUBA4A PSAP LIMK1 PPIA SH3BGRL2 TMSB10 RNF11 NDUFB8 ATP1B1 RTN1 CFH MTRNR2L6 HNRNPA1P40 ARFGAP2 PRKAR1A WASF1 NDUFB3 KCNK1 KLC1 RPL7 ATP5G1 PPP2R2B SYT4 STK39 CXCL14 ACTG1 RGS4 KCNAB2 RPS15 ARPC4 NGFRAP1 ARHGDIG ANKDD1B CAPZB ATP5F1 CADM2 C1QBP NREP ARL8A COX7A2L C7ORF50 RPS5 SCN1B ENSA PHB SERPINE2 YWHAB PNKD FAM131B ACTB CX3CL1 IPCEF1 DIRAS1 RPL3 RPL12 PPP3CA FKBP1A GDA SLC35B1 MGST3 BMP8A SCN3B ATP2A2 OXR1 CRIP2 RPS26 PTK2B RRAGA ATP2B2 GUK1 PET100 SCN2B SNN SEMA3A MAGED2 TPI1 NDUFA11 MAP1LC3B YWHAH ARF1 EIF1AX SLC6A13 LRP1B DRAP1 ARF3 FAM19A1 ETV1 NCDN RAB2A DGKG AP2S1 TSPAN7 KIFAP3 STX1A PJA2 TMEM59L CAMK2G RPL23A GRIN2A OPA1 C16ORF13 GSTT1 FXYD6 POLR2J MYRIP CNTNAP3 PPP2CB STK24 CFL2 SPOCK1 LDB2 NPAS3 NRN1 RAP1GAP2 ETV5 NEGR1 SLIT3 VSTM2L PRKACB PRNP LINC01296 ATP5E PPDPF REPS2 AP3S1 STMN4 KIF1A SNAP91 UBL5 CADM3 NRGN EIF4A2 AK5 RHEB SCAND1 ATP6AP1 SOD1 ANO3 TSPYL5 PPP1R9B BSG WASL MTRNR2L8 PRKAR1B RPS6 POMP NPTN LYNX1 RAB5C CYFIP2 KLHL5 DPYSL2 NBL1 NEFM UROS RPL26 TNFAIP8L3 BCAP31 SMIM13 MLF2 RAPGEF5 RPS2 C1ORF115 KRT17 PDCD5 SERINC1 NRCAM NARS BASP1 MRAS RPS12 CORO2B UBQLN2 CNTN1 CHL1 SLC39A3 LINGO1 MRPS21 EDIL3 SV2B MPP1 NFIA PNMA2 PCMT1 TUBA1B HEBP2 RPL39 NIPA1 SLC39A10 HS3ST5 ATP6V1B2 EIF1 NCEH1 VAMP2 MPPED1 RBX1 AKAP12 PKM VGF EPDR1 CIAPIN1 C14ORF2 GALK1 SLC25A11 TRIM47 TMEM155 PVRL1 MAP2K1 C19ORF53 ELAVL2 BDNF STMN3 ZNF365 CACNG3 ITM2B RLIM CAMKK2 CYCS CLSTN1 MAPK1 CPLX2 SSTR2 CALM3 UCHL1 SCN1A PTGES3 YAF2 RPL18A OLFM1 RSPO3 SNRPN RP11-219A15.1 ATP6V0C RP11-20I23.1 MYOM2 NDUFA13 OR6D1P PFKP ZNF385D AC244489.1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 NFIA SYT1 YWHAG PRKCB RAB6A CABP1 FKBP1A PFDN4 BAI2 GPM6A CHN1 LMBRD2 ACTG1 SCN1A MT-CO3 DYNLRB1 KLC1 NDRG4 ARFGAP2 PCBP1 NUAK1 ATP2B2 ITM2B TOMM7 NDFIP1 OPN3 RASGEF1B COL6A1 NDUFB7 EPHB6 CNR1 STMN2 CDH13 PINK1 KIF5A UQCR11 YWHAZ RP11-111M22.2 ADCYAP1 MTX3 AZIN1 LYSMD2 TIMP3 NECAB1 WASF1 NDFIP2 MAP7D2 ETV5 SLC8A2 TUBD1 BSN ATP1B1 NPTX1 TSPYL4 EFR3A PGAM1 TSC22D4 CLU NRCAM FIGN TRIM37 RPL31 DNAJC6 CD14 CHGB QKI CHMP5 ANGPT2 ARPP19 CAMK2G DPP6 HCN1 LANCL1 RPL35 ROBO2 RANBP1 TUBA1B BAALC PPP2R2C DNAJA1 YAF2 MT-CO2 EGR4 SLC24A2 PKM MAP1B WSB2 NDUFB1 SYNJ1 OCIAD1 PPP3CA HPRT1 CCK SCN3B MTRNR2L12 UQCRB PRKACB COX4I1 TUBB4B CDK14 GNAQ CMAS SLC30A3 NHP2L1 SLC17A7 ARL6IP1 TRMT112 AES MT3 NGFRAP1 RPL37A MT-ND4 HSP90AA1 FAIM2 VAMP2 NEFM TMEM258 YWHAB SERPINF1 CALM2 PGK1 NRGN ATP6V1B2 MAP2K4 SUMO3 LGALS1 MAL2 PEX5L MRAS NPTN HTR2A DKK3 ENSA SLC12A5 SV2B PGRMC1 PIN1 GNB1 MPPED1 TMEM59L COPRS RPL11 GABPB1 PLCB1 PCMT1 PEBP1 STXBP1 PTPRS RGS4 HN1 PPIA ENO2 SALL2 ATP6AP2 PTK2B CNIH3 UQCR10 MT-ND1 ATP6V0B NAPB NCAM2 EGR3 TENM1 PSMC1 HMGCR PSAP KCNC2 RTN1 SSTR2 TRIM36 SERPINE2 MT-ND3 ATP5A1 ARHGDIA PEG10 MTND2P28 IDS ATP6V0C RP11-20I23.1 MT-ND2 MTRNR2L6 ATP6V1G2 GTF2H2C_2 BIRC5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 SNAP25 MT-CO1 MT-ND4 CALM1 MT-CO3 SYT1 GPM6A NDRG4 TUBA1B TSPAN7 THY1 MT-ATP6 SLC22A17 LANCL1 ENO2 SMAP2 SCN3B CLU RAB6B PREPL NPTN ATP5I SPARCL1 TSPYL1 STXBP1 PRNP MAP2K1 RTN3 CPLX2 PSAP ARFGAP2 CADM2 EFHD2 TSPYL4 PPM1A ATP2B4 ATP2B2 NPTX1 TM2D3 ANKRD18A C14ORF2 MAP1B PPP3CA SERINC1 GRIN2A PJA2 TMEM147 CYCS SV2B SERF2 PHYHIP RPS6 ENC1 GUCY1B3 CCDC124 LMO4 CALM2 PPP1CB NDFIP1 CPE NAPB MANBAL ACTB RPL41 HSP90AB1 FTH1 NECAB1 RPL26 VAMP2 ATP1B1 MTRNR2L1 HSP90AA1 RTN4 RAD23B CHMP4B YWHAG STMN1 CNTN1 SOD1 WASF1 YWHAZ RTN1 KIF5A MT-ND1 AP2B1 TOMM20 MT-ND5 NGFRAP1 TMOD2 IDS ESCO2 RAB3B SYTL2 SKAP2 GRIN1 FOXP2 CAMKK2 JUN CAMK2G OCIAD1 RAB3A ANKRD26P3 RPL37A TF MT-CYB COL5A2 WBP2 LINC00086 SERINC3 DNAJB6 SEPW1 SRP14 TMEM14A D4S234E PCDHB10 TUBD1 ATP6V1B2 ARL8B PNMAL2 UBL5 ARPP19 PAFAH1B2 LINC00087 BEX1 MAP1LC3B TMSB4X BASP1 APLP1 NEFL NHP2L1 ARL1 RPH3A PCDHA4 PRELID1 PRKCB CAP2 MYL6 ELAVL4 FXYD7 NELL2 FBXL16 SYT11 DNER MTX3 CD59 ITM2C ROBO2 ANXA6 PFN1 SUMO2 SNCB MAPRE2 LAMTOR2 UBL4A CALM3 SLC8A2 PPP1R42 UQCRQ NDUFA5 PPP1R14A TUBA4A PIK3R1 MAPK1 SNCA ARL4D TMSB10 AES SYNJ1 RPL13A INSIG1 SYN2 TBR1 GRIK3 OR6D1P SQLE KIF1A CABP1 RPL38 FAM3C ETV5 RGS4 MARCKS TGOLN2 MED10 EIF1B STX1A YWHAQ DMTN ALKBH1 EPB41L3 SPTBN1 PSD3 CRYM PTPRZ1 ACLY KIF21A DYNC1I1 NCALD KCNA1 ATP6AP1 DCTN1 RAB1A DIRAS2 BSCL2 HMGCR RAB5C PRKAR1B TLE4 TM6SF1 FILIP1 MLLT11 MTRNR2L12 SYNGR3 TPPP PEA15 NRGN WASL MTCH1 ETV1 RAB3C SCG2 NRCAM RASGRF2 CX3CL1 SMS ITM2B RLIM GNAQ PGD PKM CCDC25 EIF1AX PPP2CB SYT6 MT-ND3 FXYD6 TMEM35 NDUFB10 NDUFA1 PPP2CA PSMD8 EFR3A ASAP1 ARL8A CLSTN1 PEBP1 MAP1LC3A PTK2B PTPRN CAPZA2 MTATP6P1 COPS7A SSTR2 TXNIP COX7A2L VAMP1 STX1B DCLK1 CLSTN2 CTBP1 CADM3 CLTC RPL7 POMP ETFB NAPA SNX10 PNMA2 NDUFB8 YWHAB NDFIP2 OXR1 SPOCK1 MRPL20 NCEH1 INPP5F ATP1A1 RAB27B SPOCK2 MRAS CREG2 SOSTDC1 PAK1 MAPRE3 ATP6V0E2 TPI1 NPTX2 C12ORF57 CDK5R1 MDGA1 SULT4A1 SH3GL2 SCAMP5 WLS LPPR4 PRKCE PLCB1 SARAF COL11A1 EIF4A2 RP11-111M22.2 ATP6AP2 SIRPA EID1 LAMTOR1 PLD3 ELMO1 FGF12 PRKACB NSF RP11-20I23.1 ATP6V0C MTRNR2L6 RP11-219A15.1 AC244489.1 GPR98 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 RAB3B SNAP25 RP11-111M22.2 SYT1 CREG2 ZNF385D TUBD1 NDRG4 MAP1B CLU ATP1B1 BIRC5 HOMER1 PCDH17 PRKCE EIF1 RTN3 ITM2B NRGN RPS27A PSD3 RTN1 ENC1 CKB ATP6V1F SYT11 TMSB10 SYTL2 ATP5J2 OLR1 CTNNA2 MTCH1 UBE2V2 NDUFB1 AP1S1 FGF12 TESPA1 ATP1A1 PRNP SNCA NUAK1 SLC17A7 PGM2L1 OXR1 UCHL1 IFI6 CYFIP2 APLP1 RPS28 RTN4 RAB3A ABHD8 CCK MAST3 PRKACB RPS15 SYNGR1 IDS ATP2B2 SARAF GAP43 DPYSL2 CD63 STXBP1 PLD3 MYL6 GRIN2A ARPP19 MDH1 S100A6 PPP3CA COL24A1 OR6D1P AP2M1 OLFM1 IGFBP5 SERF2 NAPB ATP5I RPL31 SYNPO CLPTM1 PFN2 NECAB1 LMO4 RAB3C BAALC CLSTN2 SKP1 TGOLN2 NPTXR CYB5R3 CALM1 NAT8L OTOA EGR3 BCL11B NREP PEBP1 NBL1 GNG3 FKBP1B PI4KA DCLK1 DYNC1I1 ACTG1 EFHD2 PIK3R1 COX17 RPS4X NDUFB2 TSPAN7 EIF4A2 MORF4L2 RAB40B RPL38 IPCEF1 BSG NDUFC2 RPL26 PFN1 UBL5 VAMP2 GABARAPL1 FXYD7 RPL39 RPL11 EPB41L3 SOD1 PCP4 PKM SUCLA2 YWHAZ MRPL20 SUMO2 FAM134A TPT1 PRDX2 CA10 NRCAM EIF4G2 SELT SNRNP25 CFL1 ATP5A1 KIFAP3 REEP2 DCTN1 NRN1 ASNA1 RPL13 NGFRAP1 BLOC1S1 RORB UQCRH ARF3 MAGEH1 TRAPPC1 PAM CAPZB YAE1D1 YWHAH LGI3 QDPR CLSTN1 RAB6B SLC39A10 CX3CL1 SPARCL1 CABP1 KLF10 GRIN1 GPM6A SLC25A6 SH3GL2 CAPNS1 NFE2L1 C4ORF3 BEX4 RGS12 COX7C SYT4 RAPGEF5 UQCRFS1 TOMM7 GNAQ RPL15 ASAP2 SEZ6L2 SSTR2 MAP2K4 RPH3A FAM19A1 PTPRN ATP2B4 KCNAB1 PSMA7 EIF1AX SCN3B LANCL1 B3GALT2 TSC22D1 RPS12 VDAC3 THEMIS2 SNN CAMK4 TMA7 CRTAC1 BEX5 GSK3A SIRPA CMAS TMEM130 VDAC1 AQP4 IQSEC1 PPIA RPL10A SPCS2 TMSB4X PAK1 CDS1 ENO2 ELMO1 GDI1 RXFP1 NDFIP1 ACTB CDK5R1 SEPW1 KIF21A ETV5 ACTR1A OPN3 TOMM20 NDFIP2 PVRL1 PNKD SNCB MLF2 KLHL12 HSPA4 APLP2 CARTPT NGEF CADM2 TBR1 STMN3 CPLX2 DPY30 MED10 TALDO1 UQCR11 SCN1B MTX3 CCDC154 CLTC INPP5F ARL2BP DYNLT3 ATP5E HAPLN4 PPP3CB NEFL RASGRF2 SLC12A5 CHL1 CALM3 STMN1 CTNND2 LAMTOR2 CDC37 CAPZA2 TCEB1 OAZ1 DDN YWHAG FTH1 ARHGDIG RPL12 NPTX1 CLIP3 SERPINE2 BASP1 SCD ATP5F1 ATP6V0E2 HTR1F TUBB4A FAIM2 USMG5 UBA1 NAPA WBP11 ITFG1 HPRT1 FIS1 PCBP1 EPDR1 MT-ND2 C1D PRDX1 ASAP1 PPP1CB MANBAL TUSC2 ATP2A2 STMN2 PNMAL1 PRKCB DNAJB6 CAB39 MAGED2 ATP6V0C GPR98 NGRN RP11-20I23.1 NSF GABARAP AC244489.1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 MT-ND1 MT-ND3 MT-ATP6 MT-CO2 MT-CYB MTRNR2L12 MT-ND2 MTRNR2L1 MT-ND5 TBC1D15 PPP3CA SNAP25 SYT1 MAP1B MTRNR2L8 RTN3 RPL39 RP11-219A15.1 IDS SYTL2 RAB3B BIRC5 RPL31 TUBB4A ARPP19 RGS12 OAT YWHAB PRKCE SAMM50 GPM6A PRKCB TOMM20 MMD RASSF3 BSN PLCB1 CLU CABP1 TMEM150C NDUFB5 HMP19 ATP1B1 UCHL1 SCN1A CHN1 OXR1 THY1 MTND1P23 TMEM151A PSMD12 ENC1 CAMK2G SERPINE2 SPOCK2 GRIK1 NEFL GRIN1 STMN1 EIF1AX DYNLL2 SEMA3A MAST3 ARL8A CLDND1 SUB1 INA KIF21A TSPYL1 ZBTB18 PLCD1 IGF1 CADM2 ADAM23 BEX1 EXTL2 TUBB2A SCD5 NAT8L PROX1 ACTB PPP1CB SPARCL1 LMO4 SIRPA NDUFA5 SLC39A10 ATP6V0E2 ITM2B BSCL2 CD63 ERH PPP3CB NMNAT2 PTMA TSPYL4 FAM162B CCDC184 MAFB DPF3 CBX6 LSM4 PFDN1 TSPYL5 CTBP1 CERS6 MAP1A PPARGC1A CTNNA2 GUCY1B3 TP53I11 NPTX1 DOCK10 NUAK1 MZT1 FBXL15 VSNL1 CFH TMEM191A PTK2B VAMP2 PIK3R1 NDRG4 OLFM1 CXCL14 ELAVL4 HSPA8 OPN3 STMN3 CALM1 CAP2 SULT4A1 RPL13A PPP1R9B GBE1 RGS4 IL6R HTR2A EIF4G2 GAPDH MAP2K4 NELL1 EIF1 PTN RNF11 GNG3 LIMK1 NFIA SLC22A17 PNKP PREPL SYNGR3 SCN1B TMTC4 DYNLL1 TAC3 FAM84A HSP90AB1 RELN TPI1 FXYD6 IGFBP5 NEGR1 BRK1 CNTN1 ARL4C SOCS3 ATP5H RPS15 SCAMP5 LMO3 NELL2 RTN1 PDE1A GRIN2A EFHD2 OCIAD1 ANXA7 BANF1 CHL1 KCNAB3 RPL38 GLRA3 PACSIN1 RAP2A ATP1B2 PHYHIP CLSTN1 NDFIP1 SLC7A8 ALK SLITRK1 OR6D1P CEND1 CCK GOT1 NTN4 MGST3 FAM131C HOMER1 ATP6V0C RP11-111M22.2 BNIP3 RPL18A SERF2 RP11-20I23.1 MTRNR2L6 AC244489.1 PCDHGA5 PCDHGA6 PCDHGA10 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "cortical layer 5-6 excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A IFITM3 RPS28 ADAMTS9 CD59 RPL41 SLC2A1 EPAS1 PTMA APOLD1 TSC22D1 MT1X UBC ADIRF PLOD2 ATP1A2 SLCO4A1 DPYSL2 EIF1 MTRNR2L1 PTGDS VIM ATP1A1 COX4I2 LLGL2 NOTCH3 CPE TGM2 ETS1 TMSB10 GGT5 TUBB4B IFI44L YWHAG PRKCB RTN4 CLDN5 RARRES2 RNF144B PPP2CB HIGD1B RPL7 B2M RPL13A VDAC3 SLC7A5 CALM2 SLC19A1 MTRNR2L12 DNAJB6 SLC25A6 FAM127A CST3 TIMP1 TUBA1B MTATP6P1 LGALS1 MAP1B PDP1 POLR2I NCOA4 RPS6 RP11-632C17__A.1 MT1E TCEB1 SPOCK2 MTFP1 DYNLRB1 SLC39A10 ITM2C MAF UQCR10 COPE PAK1 PRKAR1A PSMC3 YWHAZ VSTM2A RPL23A JUNB ELOVL7 NID1 NDUFC1 BNIP3 BLOC1S1 IFI16 SERF2 TPT1 MT-ATP6 WWTR1 GPX4 ATP5J NDRG2 ITM2A MORF4L1 ARL8B BST2 IFI27 MTRNR2L6 CYB5R3 MFGE8 MT-ND1 ZBTB20 NDFIP2 EGFL7 ATP10A EDNRA BSG CMPK1 ATP5G2 ENG COX7A1 FAM189A2 RHOC IPCEF1 MT-CO2 SLC6A12 FAM96B TIMP3 PRKAR1B CP ARHGAP29 YWHAB NUTF2 IFITM2 TOMM70A APBB1 CALM3 NDUFA13 FTL GSTP1 CAMK2G NOS3 YWHAH MT1F PRDX5 ATP5E VDAC1 SAMD9L RREB1 JUND PEA15 LZTS1 RPS2 PECAM1 GADD45GIP1 C10ORF54 KLC1 ESYT1 CD63 CDK17 COL6A2 PTN TMEM88 RAB1A TMSB4X PGAM1 RPS3A RLIM CNP PSAP MT-ND4 ATOH8 COX17 ETS2 GJA1 IGF2 MT-ND4L KIFAP3 PLEKHA4 ATP1B2 PPIA NFE2L1 SEPW1 RPL13 SMIM3 ITM2B PLAC9 KLHL5 AHNAK GPM6A CYCS RPS4X EDF1 SLC22A17 NCAM2 CA2 C10ORF10 MIF CHMP4B SNAP25 MAPK1 PDGFRB NDUFB7 INSIG1 ICAM2 MT-CO3 BCL6 COX6A1 POLR2K ITPR2 CRIP2 COX7C LEF1 CRYM FIS1 TGFBR2 NAA38 EBF4 TM4SF1 TBCA GABARAP RPL17 IDS RPL17-C18ORF32 RPS26 RPL36A BIRC5 SYTL2 ESCO2 RAB3B ZNF385D PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A MT1E TMSB10 APOLD1 MTRNR2L1 MTRNR2L12 RPL13A RPS15 MT1L C10ORF10 EPAS1 MT1X MTRNR2L8 UBC MT-CO3 CASP4 MT-CO1 RPS28 SDPR FLT1 RPL37A TGM2 CALM1 TUBB4B SLC2A1 ZCCHC24 RPL36A PRDX5 CDKN1A B2M MT-ND2 MTRNR2L6 TMSB4X HSP90AA1 RPS6 SRGN POLR2L MT1M IFITM3 RPL23A DCLK1 ARHGAP29 MT1F YBX3 HLA-B AHNAK CSDE1 VIM COX7C SAP18 MT-ND1 CTC-575D19.1 MT-CO2 MAP4 BSG STXBP1 IFITM2 TM4SF1 PTMA SMIM3 SLCO4A1 YWHAB RPL31 CORO1B CHN1 BCAP31 RPL26 GHITM CP ID1 SLC7A5 PLSCR1 MT-ATP6 STOM ADAMTS9 SKP1 SNCA RPL8 CA4 C19ORF43 NOP10 MTND1P23 DLL4 RPL38 PLS3 PDCD5 GPX4 FKBP1A NDUFB2 OST4 AP2S1 ICAM2 GDE1 GPR56 MT-ND4 SNCB MYL6 GGT5 ADIRF LRRC32 MORF4L1 PTN ITM2A STMN1 RPL32 TNS1 VAMP2 COX6A1 OLFM1 SH3BGRL3 COX7A2 ZFP36 FTL SPTBN1 NEGR1 MT-ND3 RHBDD2 RPS12 SERF2 YWHAH ATP1A2 SERINC3 NDRG2 CLDN5 ELOVL7 RPS26 CLIC4 S100A10 NUTF2 PON2 C1ORF64 RTN1 CHGB ESCO2 RHEB TCEA2 MDH1 PLIN2 HPRT1 MT1G A2M MTATP6P1 OSMR SDCBP UCHL1 MARCKS RHOA SPARC STC2 MRPL33 TMA7 ATOX1 CMPK1 RGCC MYO1B COX5B TUBA1B NDUFB7 SELM GRAMD3 RABAC1 ENO1 TMTC1 PPP1CB PVRL2 CDH5 PRDM1 TUBB2A PODXL IFI6 RPL21 COX4I1 NRGN SPARCL1 ATP5I COA3 CTNNB1 ZFAND5 COX7A1 HEG1 GFAP PPIA RPL35 RAB6B SYT1 PFDN4 TEAD4 GADD45GIP1 IGFBP7 DISC1 SNRPN JUND CDK17 ACTB DCTN3 RPS3A NGRN RPL17 RPL17-C18ORF32 C20ORF24 IFITM1 ATP6V1G2 TF ZNF385D SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1X MT1E MT-CO3 IFITM3 MT1M MT-ND3 MT-ND4 MT-CO1 IFITM1 GAPDH RPL41 PTMA TMSB4X RPS28 EIF4A2 ACTB CHN1 CALM2 HIGD1B SPARCL1 ACTG1 SNAP25 CALM1 RPL32 MT-CO2 MT-ND1 RPL21 RGS5 ENO2 RAB3B FTH1 RPL13A PTN LGALS1 SELM DPYSL2 YWHAZ BASP1 FTL BSG MYL6 RPS27A RPS2 MT1F COX6A1 TMA7 MTRNR2L1 MT1L EIF1B YBX3 VEGFA MORF4L1 CPE DNAJB6 B2M RPL13 SLC22A17 NRGN SEPW1 NDUFB10 PSMA7 PFN1 PSD3 CLTA SYT1 NDUFA1 APOLD1 DUSP6 GPX1 NDFIP2 CD59 PRKAR1A RPS15 PRDX2 MT-ND2 TCEB1 COX6B1 NDUFS5 CAPZA2 RAPGEF5 RPS26 FKBP1A S100A10 MPC2 STK39 TSC22D1 SIRPA SERF2 ATP1B1 AURKAIP1 REEP5 EDF1 TBX2 PPP2R4 VAMP2 GRAMD3 RPL18A VAMP5 RPL11 RHOA CTBP1 HSP90AA1 LHFP MAPKAPK2 IFITM2 CCDC124 AMIGO2 ENG HSP90AB1 ATP6AP2 SUMO2 NBL1 ARL6IP1 PLD3 GUK1 KIF21A GPX4 NDUFA12 PPP2CB IFI16 BGN GNAQ PPM1A MTATP6P1 PGAM1 EID1 RPL8 SLC7A5 CA11 ATG101 CSDE1 RANBP1 TUBB2B NAP1L2 RPS4X CDS1 TCEAL2 NDFIP1 NDUFA13 CAMK2D SDCBP UBL5 RORB SLC39A10 SH3BGRL3 ARHGAP29 PPP3R1 RPL23A PDE3A PDE1C CFL1 SLC1A3 ATP6V1A RTN1 COX17 EZR EIF1AX PCMT1 SLC25A6 PON2 PHPT1 C10ORF10 EIF1 BCAP31 MTCH1 COX7C CLIC4 PMP2 GSTT1 TPD52 PSMC1 PEA15 RAB11FIP5 TRIB2 PRDX1 RNF181 ENC1 ARHGDIA PRKCE SEZ6L UBA1 DLC1 RPS3A IPCEF1 COX7A1 RPS6 CLTC COL1A2 GPM6A CRIP2 C4ORF3 TRMT112 PPP2R2C NDUFA2 SNX10 STMN1 OLFM1 SPARC COX7B STMN2 S1PR1 BSN MTRNR2L12 PCDH18 PTGES3 ADSS RAN NID1 ARL8B TUBA1B ANXA6 SUB1 ABCA8 MT-ATP6 CLTB ATP5E GOT1 COX4I1 OAZ1 SERP2 RAB7A ATP5J RAB34 RPL38 DCLK1 TUBA1A OAT LAMTOR1 TPT1 TMEM59L PLCB1 ATP5I AP2M1 MTUS1 VSTM2L NDUFB2 PITHD1 TERF2IP PLEKHG1 TMSB4XP4 CDK5R1 LBH PPP3CA PRKCB COL6A1 MTX3 ATP1A2 NR4A1 HSPE1 NDUFC1 GRM8 EDNRA GDI1 RTN4 ATP5O ACTR10 TAGLN3 ITM2C HSPA2 CAP2 SRGN COX7A2 VIM WARS H2AFZ NDUFA5 NEFM SLC9A1 ACLY FIBP ATOX1 RPL26 IL4R LAGE3 WDR47 RAB6B C14ORF2 COX5B SERINC3 UCHL1 BANF1 RPL12 GPCPD1 RPL7 SAP18 ATP2B2 PDLIM5 BTBD10 MAP1LC3B AKAP12 ZCCHC12 ALDOA CMPK1 GABRE MYL12B POLR2L PEBP1 BEX1 DYNLT3 RPL37A MT3 RHOB PLAC9 LZTS1 TANC1 STMN3 MT-ND5 HMP19 SV2B MRAS TCEB2 FKBP8 LANCL1 MAPK1 PPIA DCC TUBB4B IQSEC1 CAMKK2 MGST3 A2M LMO3 CLDND1 NPY TXNIP RPL3 BLOC1S1 DCN CDH13 PGK1 RAB3C UQCRH NFIA ITFG1 PTPRZ1 SMIM3 RPS19BP1 COX6C GGT5 HK1 RPS10 GPR133 PAM MIF TUBB3 BSCL2 RPL17-C18ORF32 DYNLRB1 CFH RPL17 IDS ATP6V1G2 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 JUNB C11ORF96 MT1X TMSB4X GAPDH MT1L MT-ND4 EPAS1 CDKN1A GUK1 FLT1 ZCCHC24 XAF1 IFITM3 SPARC PTMA RHOB RPL13A MT-CO1 EIF1 TUBA1B MT-CO3 MT-CYB YBX3 RPL41 GNG11 ADAMTS1 SPARCL1 SLCO4A1 IFITM2 RPL12 EGFL7 ADAMTS9 CRIP2 PODXL UQCR11 RPL18A RPL13 SPTBN1 VIM MT1E COL6A2 ACTB UBC FTL MT-ND2 CTSD SMAD6 NDUFA4L2 ATP5E TSC22D1 SLC7A5 PRKAR1A MTUS1 RPL37A RPL11 MTRNR2L1 CDH5 BGN CPE TMEM147 IL4R NEK7 SNAP25 PFN1 SERF2 TM4SF1 CRIM1 ARF3 ATP1A2 RAB11A BSG MTRNR2L12 MT-ATP6 FTH1 COX5B GSTP1 ANGPT2 RPS28 MT-ND4L PECAM1 RPL17 NDUFA11 TAGLN2 RGS5 S100A16 PLSCR1 LEF1 A2M ELTD1 EMCN EMP1 CALM2 SLC19A1 YWHAB PTGES3 POMP TCEAL2 CAMK2D DUSP1 CFL1 RNASE1 SLC38A11 ETS1 MT-CO2 DPYSL2 SRGN UQCRQ PRDM1 ITM2A CAPZB CD63 RAN DYNLL1 MRPL52 PKM COX17 RPL23A MT1M S100A10 ATP5A1 ELOVL7 RPL17-C18ORF32 COBLL1 NOTCH3 GPX4 MTRNR2L6 DNAJC21 ISCU TUBA1A PTPRM SNRPE RRM2B RPS27A THSD7A EZR RAPGEF5 SOCS3 CCDC85B IFI6 MT1F CD59 RHOC CLIC4 MAP1B DNAJC6 LRP2 MT1G RCAN2 STOM ATP1A1 ITGA6 HIC1 TRAPPC1 NPY AHNAK RPL32 CAB39 MARCKS RPS15 ZBTB20 SERINC1 ICAM2 ENO1 TIMP3 CD9 BLOC1S1 CLDN5 SDPR MRPL47 PPP3CA PITPNA TM2D3 ENG NDUFS5 GDI1 SMIM12 ID1 NDUFC1 TRIL KCTD12 RHOJ HBA2 PAM ATXN10 IGFBP7 FKBP8 SELM ITM2B TUBB4B COX6C STRAP MYL6 SLC25A5 ANXA3 MAP4 BRK1 CST3 TMEM123 HINT1 SIGIRR PGK1 NAPB C10ORF54 SKP1 ATP6V0B CLU MT1A ATP5I BST2 TANC1 HIGD1B TSPAN7 SRM YWHAQ NCDN PRX TOMM70A RPL39 PDGFRB UQCRB MAP2K4 EDN1 GPR4 RPL21 CTDSP1 USMG5 NDUFB10 RREB1 GIMAP4 ACTG1 AKAP12 ATP5B AXL NHP2 IFITM1 EPS8 OAZ1 APLP1 CISD1 YAF2 MTATP6P1 TIMP1 UQCRH PEBP1 UBA52 GPX3 AIF1L COX6A1 HES1 ACTR1A PVRL2 LAMA4 PPP3CB ENC1 POLR2I PNKP SSTR2 TCEAL7 REEP5 RAB13 PTN ATOX1 SLC2A1 TNS1 NAP1L2 PI4KA PPP1CB LRRC32 RP11-111M22.2 CYCS PRKACB SUB1 TPI1 ZMAT2 SLC1A3 HSP90AB1 SLC25A4 SLC38A3 WSB2 RPS12 TBCB ARHGAP29 CFH GPR133 SLC6A12 PRRX1 SERINC3 VAT1L NPTXR MT-ND3 C7ORF50 C10ORF10 TGM2 FAM111A CTBP1 IFI16 MFGE8 CNP HSP90AA1 COX8A TPT1 POLR3H CALM1 RPS3A POLR2L CYSTM1 UTRN FJX1 CAMKK2 GPCPD1 MYO1B KCNV1 C1QBP APOLD1 MRPL33 TSPAN4 GSTT1 TMA7 NGFRAP1 PRDX1 PPIA ALPK1 PPP2R1A EDIL3 KLF2 SPRYD3 ACTR6 GRAMD3 MORF4L1 AP2S1 VWF CBX6 ARL6IP1 COX6B1 FAM174A SLC25A6 SPOCK2 GUCY1A3 NID1 SCN1A CTC-575D19.1 CTGF GABARAP SEMA3B C19ORF33 HNRNPA1P40 AC244489.1 RPS10 ALDOA RPL36A HLA-B RAB3B SYTL2 ARFGAP2 ESCO2 ZNF385D PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1E PTMA MT1X TMSB4X IFITM1 SPTBN1 CD59 PECAM1 RPS28 RPS15 RPL13A SPARCL1 MT1M IFITM2 RPL41 FLT1 SLC2A1 CLDN5 IFITM3 EPAS1 KLHL5 RPS2 UBC DNAJB6 ACTB CDKN1A RPL8 MT1F SDPR CPE MYL12B ZBTB20 MRPS21 TIMP3 MT-ND1 UQCRB COL5A3 SERF2 DCLK1 MYL6 VDAC2 RPL38 NID1 DUSP1 FAM43A TSPAN4 ATP5B MT-CO1 GAPDH C10ORF10 ITM2C RGS5 ELTD1 POMP IL1RL1 CDH5 RGCC YBX3 HSP90AB1 MT-ND4 SLC38A11 GDI1 HIGD1B PPP2R1A HLA-B ALDOA RPS6 RPL3 ARPC5L COL6A2 STMN2 ATP5E ESYT1 HSPA4 ENC1 CA11 NFE2L1 IGF2 ICAM2 MORF4L1 SLC7A5 CFL1 CYSLTR2 A2M EGFR RPL18A NDUFB5 ERG C1QBP SLCO4A1 MTPN RPS10 RPL13 MTUS1 ENG PMEPA1 RPS27A NDUFA4L2 C12ORF49 HDAC1 TMA7 DLC1 MT-CYB ATP1A2 ELOVL7 ATP1A1 PFN1 MZT2B S100A10 CALM2 RPS19BP1 CAMK2D PRKCB S100A6 CLIC4 TCEAL7 RNF11 DCN MARCKS GJA1 TRIB2 WI2-1896O14.1 RP11-632C17__A.1 TUBA1B TMEM204 ATP5J2 S1PR1 SNAP25 MORF4L2 PAM MAPKAPK2 PCBP1 TGFBR2 ANGPT2 MT1JP OAZ1 PTPRN2 UTRN NDUFB8 DPYSL2 AES SPCS2 ITM2B SLC17A7 VWF RHOA ADAMTS9 SDCBP MT-CO3 CLTA EGFL7 HINT1 ENSA TCN2 MYO10 TMEM179B ATOX1 ENO2 TUBA1C XAF1 MT-ND4L RAB13 EID1 BCAS2 COA3 BSG ARL6IP1 MT-CO2 H2AFZ EIF4G2 EMCN RPL39 FAM19A2 AURKAIP1 FKBP1B TMEM258 ACTG1 COPE MIEN1 GPER1 B2M NXPH1 COL4A3 FAM127A UQCRC1 LEF1 RPL26 PGRMC1 CAMKK2 LCP2 RHEB SARAF IL13RA1 APOLD1 SLC7A1 PXDC1 C14ORF2 PIK3R1 RP11-111M22.2 NAA38 IL4R CLSTN1 EMP1 MAP1B CD99L2 ID1 TOMM7 PRDX5 RPL32 OSMR YAP1 NDUFAF3 PLEKHG1 C11ORF31 SYPL1 MAP1A LRRC32 NDUFB11 MT1L BHLHE40 PRKD2 SLC1A3 SPOCK2 ADAMTS1 RTN4 ANXA3 SYT13 TTN CLIC5 PKM P2RY14 NDUFB4 ST6GALNAC3 ATP5I PRDX3 CRIM1 PTN MRPL20 SELM MIF MT-ND2 NGRN RPL36A RP11-20I23.1 TUBB3 ATP6V0C MTND2P28 SYTL2 RAB3B DNAJC21 TBC1D15 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A IFITM3 TMSB4X TMSB10 MT1E NDUFA4L2 GNG11 GAPDH PTMA RPS6 GABRE LGALS1 IFITM1 EIF1 IGFBP7 MT1X RPS15 CYSLTR2 DPYSL2 RPL41 RPL15 ACTB TXNIP SPARC RGS5 COX7A2 APOLD1 PTGDS RELL1 CA2 RPL6 CLDN5 RPS27A CALM1 CD59 UQCR11 ATP5E UHMK1 VAMP2 RPL18A TSC22D1 MT-ND2 NDUFS5 PPIA PSMC1 SRGN HSP90AB1 HEYL NDUFB8 SLC25A6 PRKAR1A COX7B PEBP1 TGFBR2 PROCA1 MT1L KANK3 CD63 SUMO2 RPL37A DCN RPL21 RPS28 RPL13 PLEKHG3 PPDPF TUBA1B MT-ND3 UQCR10 NAA38 COX4I1 NOTCH3 BRK1 MRPL51 YWHAH MT-CO3 COX5B PLS3 TMEM11 ZFAND5 CAMK2D HSPA2 FAM107B RP11-195F19.5 TCEB1 HSP90AA1 MT1M TSPO ARL6IP1 LRRC59 POLR2K ATP6V1G1 RPS4X EPAS1 COL6A1 GUK1 COL6A2 MTRNR2L12 PPP2R1A NDUFB7 H2AFZ PET100 RPL36A COL5A3 GNB1 ATP1A2 STC1 TSPYL1 PDGFRB ICAM2 TMA7 ISCA1 GMFG NDUFAF3 TUBB6 RPL11 GOLIM4 RHOB ATP6V1B2 RSL24D1 YWHAG DCTN3 EDNRA SCD C1ORF54 RPS2 GLUL FXYD7 COL4A3 RPL31 SLC19A1 CFH GPM6A MAP7D1 HIGD1B NHP2L1 DNAJC6 SH3BGRL3 DNAJB9 VSNL1 MCM5 CHN1 RPL13A KCNC2 WBP2 SLC6A1 PPP1R14A UBA52 S100A10 IFITM2 GSTP1 TBC1D15 ACTG1 PPP1CB IFI6 MTRNR2L1 PMEPA1 PXDC1 ZFP36 RPL7 RPL8 FRZB MAP4 PREX2 GPR4 TIMP3 GABARAPL2 MAP1LC3B NDUFB11 GNG5 COBLL1 F3 BCKDHB ZCCHC24 BEX4 GLO1 RTN3 CMAS TPT1 B2M CSDE1 AP2S1 UQCRB RNF144B TNS1 RPS5 TMEM123 COX7A1 DNAJB6 BSG PSD3 CFL1 CDC37 MRFAP1 C1ORF64 RAD23B HSPA4 RFK CHMP4B RHOC ATP5J2 COX6C RTN4 COPRS LZTS1 PRELID1 ACSL5 SYPL1 PTN EPDR1 SIRT4 ENSA TALDO1 STK39 S100A6 SMYD2 MYEOV2 PRDX5 C7ORF50 UBE2F NGFRAP1 MZT1 ITGB5 COX17 CPE STK24 RABAC1 SYT1 TOMM7 PRNP SERF2 MORF4L1 NDUFA13 NDUFB2 MT-ND4 CKB SYTL2 RAB3B ZNF385D GABARAP RNASEK-C17ORF49 RP11-20I23.1 NR1I3 ATP6V0C C11ORF31 PSMB3 ALDOA\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1X CLDN5 MT1E FLT1 IFITM3 BSG SRGN APOLD1 RPS28 TMSB4X RPL13 ADAMTS9 B2M TM4SF1 IFITM1 MYL6 EIF1 RPL37A RPL21 MT1M SPTBN1 SLCO4A1 RPS27A SLC2A1 RGS5 RPL41 RPS6 RAB3B MT-CO2 LAMA4 AKAP12 MT-CO1 ABCB1 MT-CO3 SPOCK2 GBE1 TPT1 ADIRF GAPDH EPAS1 RPS5 PLSCR1 ACTB ARHGAP29 RPL13A DUSP6 GATA2 NOTCH1 ANGPT2 MT1F TAGLN2 CRIP2 RPS26 RPS3A RAB5C DPYSL2 PRKAR1A CCK POMP YBX3 RPL32 TSC22D1 IL6 CALM2 CDH5 CALM1 RPS2 RNASEK-C17ORF49 MTRNR2L1 FTH1 RPL26 SPARCL1 ATP1A1 TUBB6 GIMAP4 MT-ND2 NDFIP1 VWF OST4 SLC7A5 WARS STK24 REEP5 CRIM1 NEFL ADM PET100 GABRE NDUFC1 EGFL7 RPL3 TUBA1C PPP2R1A FKBP1A SIGIRR PLAUR TMEM123 SEPW1 GABARAPL1 SLCO2B1 PODXL TRIB2 TMA7 BGN NDUFA4L2 VPS35 UBC RBX1 UBA1 PFN1 NDUFB2 VAMP5 RPL7 BCKDK TIMP3 PGK1 MTUS1 MT1G CD59 FTL RPS15 RHOB MRPS21 PON2 PREPL EIF4A2 RHOC TUBA1B S100A6 SLC1A3 S1PR1 IGFBP7 PAQR8 PPP1R14A JUND RPL6 CLEC14A COX7A1 NFIA HIGD1B RGCC ITM2A TGM2 DUSP1 A2M HLA-B H2AFZ LGALS1 MFSD2A APLP2 COX7C RPL11 SNAP25 YWHAH ALDOA PARP14 CCND1 PGM2L1 EPS8 TBC1D15 WWTR1 UHMK1 DYNLT3 RAB11A COX7B UQCRB QKI ARPC5L RELN NHP2L1 SEPP1 GNG5 MT-CYB PRKD2 ZBTB20 TCEB1 MORF4L1 GNG11 CASP4 MAST3 EPS15 GPR116 SYT1 PRKCE SCD SPARC GPM6A GADD45B C12ORF57 RAB1A NDUFB1 FAM43A CDKN1A MTRNR2L6 PDE9A SNRPN MMP24-AS1 SNCB MAPK8IP2 YWHAZ GRM8 ID1 TCEAL7 PGRMC1 TLE4 UBB VEGFA ARF5 TGFB1I1 PNMA2 SYT4 SLC1A2 TOMM7 PTN ATP2A2 HSP90AA1 VIM SARAF LMO4 RPL31 FAM134A RAPGEF5 C7ORF50 RPL8 GNAQ COL4A3 PEA15 TMEM204 RAN CHCHD2 COX8A THOC7 ITM2C MBP PRDX5 MT-ND3 SLC38A11 SLC6A17 BLOC1S1 SLC7A1 MAP1B ATP1A2 OPA1 CEND1 CAPZA2 RGS12 CETN2 COX7A2L CNRIP1 ATP5I ESYT1 TPI1 PINK1 KLC2 TRMT112 CCT5 MDH1 C10ORF10 PPP3CB ATP6AP2 SYT11 MRFAP1 SLC24A1 PANX1 PVRL2 C4ORF3 SNX3 TMEM130 WSB2 CFH PCMT1 PPP3CA EML3 NCEH1 NUDT13 MANBAL CFI PPP2CA COX6C NR2F2 CPE FAM84A PDE3A TXNIP TBCA ITPR2 LDHB GNB1 AHNAK VWA1 NDUFS5 CCDC85B HSP90AB1 SLC38A5 PLEKHG1 RPL39 ANO3 SLC6A1 PPDPF PRNP DIRAS1 RNF11 STMN1 SUB1 C1ORF64 RELL1 TANC1 COPS7A GSTO1 HPRT1 THY1 SKP1 RPL15 MYCT1 TUBA4A MTPN NFE2L1 DNAJC21 ETS2 NWD2 RNASE1 YWHAG EIF1B CLU SPOCK1 MAGED2 RAP2C ATP5J2 UBA52 TUBB4A MTRNR2L12 CCDC124 POLR2J NRAS PKM MTRNR2L8 PDCD5 SLC39A10 NR1I3 PNKD ITM2B NAPB MZT2B PECAM1 ATP10A C19ORF70 NDUFB7 YWHAB TSPYL1 PDK4 GABARAPL2 CYCS NPTXR NDUFA8 DLL4 RP11-632C17__A.1 NDUFB8 IFITM2 RND3 ATP6V1G1 PJA2 HES1 GAP43 CLIC5 GDI1 PTMA TEX2 GSTP1 UQCRC1 SIPA1 FAM127A PRELID1 IL3RA NDUFA2 GAD2 ACTG1 SERF2 LZTS1 ELOVL7 THSD7A MT1L EIF1AX COX17 TUBB2A CAB39 RPL38 CPNE8 ICAM2 LHFP UQCR11 POLR2L EXTL2 PSMB3 RPL17 RPL17-C18ORF32 GABARAP MIF GTF2H2C_2 TUBB SYTL2 IFI27\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1X CLDN5 RPS28 RPL41 MT1E MT-ND3 FLT1 ANGPT2 APOLD1 RPL13A SLC2A1 IFITM3 MT-CO3 FTL EIF1 MT-ND2 PTMA UBC MYL6 BSG TPT1 RPS5 MT-CO1 RPL26 RPL17 IFITM1 CALM1 RPL13 STOM PPIA MT-ND4 RPS6 EPAS1 MT1L B2M MT1A MT-CO2 PTN RHOC RPS27A GPX1 CORO1B YBX3 A2M EGFL7 RPL23A NDUFA1 UBA52 APP TAGLN2 RPL18A MT-CYB SNAP25 PDCD5 MTRNR2L12 RPL3 TUBA1B PTGDS TPI1 IGFBP7 COX5B COX7A1 TM4SF1 LAMA4 SRGN POMP SRP14 ARPP19 C10ORF54 ZFP36 SERF2 NDUFA13 NDUFA4L2 TNS1 CD59 TGM2 EMP1 ID1 PLSCR1 IDS MT-ND1 RPL37A IFITM2 OSMR MTUS1 ATP5E RPL36A SLC1A3 CD99 ACTB C1ORF64 RPL15 DUSP1 GAPDH MTCH1 CYB5R3 MGST3 PCDHGA6 DLL4 POLR2L GNG5 NGFRAP1 CP RPL11 COX17 CALM2 SPTBN1 HEY2 FAM3C FKBP1A SLCO4A1 GPM6A ARL6IP1 BCAP31 RPL39 RPS15 ATP5J ATP5B BTNL9 MTRNR2L8 IGF2 PFN1 PCBP1 UBA1 ATP5I PRKAR1A RHOB ITK YWHAG SPARCL1 OST4 TMSB4X S1PR1 DYNLL1 FTH1 PTRF FBXL15 MORF4L1 BANF1 TUBA1A PDGFRB PIK3R1 CABP1 PREPL ATP6V1F SOCS3 DLC1 NOTCH3 STC1 CLEC14A IL3RA JUNB SLC7A5 NDRG2 MAP1B COX7A2 PECAM1 BRK1 PRKCH MT-ATP6 RPL31 ITM2B AP2M1 SSTR2 COX6A1 RNASEK-C17ORF49 CFL1 SRP9 NDUFB10 LZTS1 TMA7 USMG5 RPL35 DSTN RARRES2 UQCRB ATP1A2 CETN2 LMO2 RELL1 CST3 IL1RL1 AKAP12 GUK1 SYTL2 RAB3B RPL21 PVRL2 GSTP1 CACNG3 NUPR1L ATP6V1G1 SEMA3G CRIP2 NDUFS6 ZNF703 MRPL55 MTRNR2L1 PARP9 ITGA6 PPP2CB ARL2BP GADD45B ARHGAP29 COL5A3 NDUFA8 HINT1 VAMP2 ELAVL2 TKT ACTR1A TUBA1C ADIRF CCM2L PRDM1 TUBB2A PPDPF ATP5G2 PDK4 CA4 SARAF UBE2E3 ISCU MAP2K2 GGT5 PAQR8 NME1 EMCN SMIM12 NFIA OPA1 SLC7A8 PRKCB CITED2 DNM3 PGD VIM DPYSL2 PAFAH1B2 SNX10 LYNX1 RPL10A PBX3 SEPP1 PITHD1 NUAK1 ODF3B PPP1R14A CCK ACTG1 EDN1 CSDE1 S100A16 PTGES3 CDR2L FKBP8 PCMT1 LAGE3 AIMP2 MYL12B RHOA C12ORF57 CD63 NACC2 DUSP6 NRGN PSMC3 CASP7 ZFAND5 MED10 LGALS3 GJA1 KCTD12 DYNLRB1 WLS PARP14 COMMD6 GRM3 CA11 ATP5G3 ISCA1 CLTA GADD45GIP1 GPER1 RAMP2 TUBB6 PGM2L1 ADTRP SLC38A11 PPP3CA CCDC85B CPE RPL32 SCAND1 RPS26 TM2D3 CTC-575D19.1 DCN LSR IFI6 PLD3 CMAHP TRIB1 PLAUR ALDH5A1 PRDX5 VWF ANAPC11 DYNLT3 SUMO2 STMN3 ARPC4 RABAC1 MORF4L2 ST6GALNAC3 NR2F2 LGALS1 CBLN4 TRAC COX7C PET100 TSPYL4 FASN PSENEN TMEM230 RAN FSCN1 HSPA8 C19ORF10 GFAP ELOVL7 SLC17A7 UQCR11 SDCBP SPARC ITM2A SSBP3 UBB NDUFB7 MRFAP1 EPS8 SLC6A13 VAPB ISG15 COX6C MT1F PPA1 PRKCE CTNNB1 HSP90AA1 CCT5 C10ORF10 POLR3H NEK7 ATP10A BGN ARHGAP6 CTBP1 LAMTOR2 RRAGA C11ORF96 CLTB NUTF2 PSMA7 FOXO1 COX4I1 CDC37 RAB6B PAK1 OLFM1 PKM POLR2M CALM3 ADAMTS1 CARD16 SYPL1 PRELID1 ABCB1 HSP90AB1 GPX4 GABARAPL1 STX1A ELTD1 COA3 COL6A2 DCLK1 DCTN3 GUCY1B3 NELL2 SYT1 EFHD2 QKI RGCC RPS19BP1 MAPK1 KLHL5 NDUFB8 NHP2 NREP CYC1 NECAB1 SELM RPS3A SERINC1 GPR116 RPL6 EDF1 PLOD2 GDI1 NDUFA11 PHKG1 MT1M ALG3 YWHAH SPSB2 ERG BLOC1S1 NR1I3 CDKN1A SH3RF1 LAMTOR5 PLAC9 SOD1 SNAP91 PPP2CA SLC6A1 FAM134A AURKAIP1 BHLHE40 MT1JP TSC22D1 FAM219A YWHAQ PXDC1 WBP2 ADSS TMEM63A COX14 NDUFB4 NRN1 ETS1 ACSL5 S100A10 ETS2 ITM2C MRPL20 SERPINF1 OPCML NOP10 UBL5 ENO2 ICAM2 DNAJB9 HIC1 PPP3CB AP2S1 SDPR SPOCK2 HLA-B CFH TUBB BSCL2 PSMC1 ALDOA GABARAP GTF2H2C_2 RPL17-C18ORF32 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A IFITM3 PTMA PTGDS MT1E APOLD1 MT1X CLDN5 RPS28 NDUFA4L2 TMSB10 MT-CO2 SLC2A1 TMSB4X EGFL7 FKBP1A MT1M SLC7A5 STC1 IFITM1 EPAS1 PSAP MTRNR2L1 PRKAR1A FLT1 ACTB MT-CO1 C11ORF96 CLTC CTDSP1 RPL41 FOXQ1 ITM2B RAB3B C4ORF3 MT-ND1 TCEB2 CA2 SELM RPS27A FTL COX8A ARPP19 COX4I1 RPS15 COX6C RPL35 RGS5 NOTCH3 SLC1A3 ADAMTS9 NDUFB2 SEPW1 ID1 IFITM2 ODF3B JUN BSG VEGFA C10ORF10 YBX3 SUB1 UQCRH RPL17 NDUFA8 MAPKAPK2 CP CCK GRINA COL6A1 AKAP12 RPL23A PFN1 MT-ATP6 POMP MT-CO3 ATP5E CAMK2D ID2 VWF YWHAG RPS6 XAF1 CAPNS1 OAZ1 TMEM123 MAP2K1 EPS8 TSC22D1 MTRNR2L6 TUBA1B IGF2 DPYSL2 TPI1 TM4SF1 SLCO4A1 RELL1 DUSP1 SPTBN1 ATP1A1 HSPA2 SLC39A10 TUBB4B GAPDH MT-ND2 PPP2CB HEY2 EIF4A2 RHOC MYL6 PKM NDUFA13 PLAC9 SMIM3 DYNLL1 ZFP36L1 RPL31 RNF152 UBC JUND ITM2A MAP4 TSPAN7 JUNB BCL6 FTH1 TGM2 CFL1 MYO1B RPL15 ZFAND5 RPL8 TBC1D15 MED31 RAB6A PRKCDBP SMIM12 CALM2 ATP5J2 YAF2 CRIP2 P2RY14 TAGLN2 MT1A GADD45B MLF2 AGT SLC25A4 SEC61G DGUOK SPARCL1 NAP1L5 RPL13A AZIN1 ATP1A2 S1PR1 ATP5B HIGD1B IL1RL1 SEPP1 GFAP CD58 GPX1 TPT1 ACTR1A RPS3A AURKAIP1 PECAM1 YBEY TUSC2 PVRL2 COX7C IL6 NR4A1 COBLL1 ATP6V1G1 CTSD SPOCK2 PPP1CB ACLY ZNF574 CDK14 CD63 OST4 RPL10A CRIM1 CPLX1 TM4SF18 ADAMTS1 NDUFC1 TMA7 TUBA1C C18ORF32 PREPL MRPS7 RAN MT1L UBL5 MRPL55 SKP1 RPL39 PEA15 RPL6 FOS NRCAM PBX3 SPARC PODXL CLPTM1 ADM HPCA AES HLA-B SELENBP1 HIC1 DISC1 PEBP1 ELMO1 MTATP6P1 RAMP2 VIM BTNL9 STMN1 BGN HNRNPH2 PLOD2 MTUS1 COPE FXYD6 COX7A1 POLR2J ICAM2 IFI16 TRAPPC1 AP1S2 SLC6A17 HSP90AA1 PSMD2 ATP5H BEX4 GNG5 ATP5J EIF1 PSMC3 RHEB TPD52 COL5A3 PAM MT-ND4 KLF10 YWHAB MT1JP INHBB MT1G NCDN PLCB1 SDPR S100A13 NINJ1 C19ORF10 ARHGAP29 RHOJ SYT5 MMP24-AS1 RPL12 TIMP1 DNAJB6 BHLHE40 GABARAPL1 FUNDC1 SCOC SRGN RP11-632C17__A.1 PFDN4 RAB34 PET100 ACTR10 SAP18 GNB1 STUB1 KLHL5 COX5A CTGF RPL26 RPL13 FAM134A SLC38A11 NDUFA5 MYEOV2 CYB5R3 SMIM13 CORO2B CXCL2 RARRES2 PPDPF LGALS1 SH3BGRL3 GJA1 EPB41L3 USMG5 UQCR11 SDCBP AEBP1 LRRC32 CCDC85B TLE4 CKB HILPDA NRN1 MT-ND5 PDLIM5 STRAP PSMA7 SUMO1 MIEN1 SERF2 MTPN ERG MTRNR2L12 IL4R PSMC5 TRIB1 RPL3 TNS1 TGFB1I1 COX5B RPL37A PDGFRB C7ORF50 AXL GRIN2C RPL18A MORF4L1 RP11-111M22.2 PRDX2 EDN1 FIGN GNG11 STXBP1 TGFBR2 COL6A2 UBL4A TBCA CYCS CERS6 LAMA4 H2AFZ C12ORF49 RPS2 CD9 MYL12B CD99 HSPB1 CALM1 ENO2 TMTC1 CDC37 LCP2 PTPRN AP3S1 NDUFA1 SARAF AP2M1 PARP14 TOPORS-AS1 C12ORF57 RPS4X FBXL15 RPL38 COX4I2 APP MTCH1 RPL32 NDUFB11 GABRE RAB1A EGFR BSN MIF TUBB3 NSF NR1I3 ALDOA NGRN SNRPN CD59 RPS10 GTF2H2C_2 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB10 MT2A RPL21 ACTB TMSB4X CYP1B1 IFITM3 RPL13 TM4SF1 MGP CLU GAPDH EIF1 RPL41 CLDN5 ADAMTS1 MT1X RPL32 S100A6 CRIP2 RPS12 CRIM1 RPL38 RPS27A IFITM1 THSD7A RPL39 USMG5 RPL37A RPL31 C10ORF10 RPL23A S1PR1 TMA7 HSPA8 A2M RPL36A NNMT PTMA HSPB1 B2M RPL3 TGM2 RPS4X TAGLN2 YBX3 LRRC32 IFITM2 C19ORF33 DUSP1 HSP90AA1 GABARAPL2 MT1E RPL18A PTX3 RPL12 TUBA1B CALM1 RPS6 CFH PDLIM1 TSC22D1 BGN WARS ARHGAP29 ELTD1 FTH1 ZFP36 EPAS1 HEG1 RAB3B RPL15 UQCRB MYCT1 IGFBP7 IL4R C14ORF2 RPS3A TXNIP RPS2 PTGS2 GNG11 UBC NARS MZT2B CYB5R3 PARP14 CD9 PECAM1 FBLN2 RELL1 SNCG RPS28 SPARCL1 TPT1 KCTD12 GNAQ HINT1 METTL7A SERF2 TUBA1A PPP3R1 NFIA ADSS RPS5 MEDAG SRGN HSP90AB1 SERPINE2 HILPDA RPL11 MORF4L1 COX5B PIP4K2A EIF4A2 CD93 SLCO4A1 MGST3 FTL HK1 C19ORF43 TOMM70A PAM MTPN NFE2L1 SRP14 PSAP FAM89A RPS10 TPRG1L RPL8 FOXO1 NDUFA2 H2AFZ GABARAP CLIC4 COMMD6 SH3RF1 EMP1 ACACB RPL10A RAB1A ZBTB18 IL33 KLC1 LINC00116 MPC2 YWHAG ENO1 MT1M RPS26 ATP6V0E2 TUBB4B NPTN MT-CO2 RBX1 PEBP1 FKBP8 PRNP RAB13 COPS8 PPP2CB PTGES3 SPTBN1 EDF1 RPL7 DPYSL2 GABARAPL1 TMEM123 STUB1 ENSA FOS HNRNPH2 BST2 SLC7A2 STOM STK24 APOL6 ETFB MAP7D1 PPA1 ANGPTL4 YWHAZ EGFL7 NDUFAF2 PGD YWHAB NAA38 RPL35 TANC1 WASF1 VSNL1 HMP19 BANF1 TCEB2 ATP5B ARF3 SH3BGRL3 ATP10A ENG NGFRAP1 DNAJB6 CALM2 POLR2L ATP5E PGRMC1 CTSD BAD ANXA1 NDUFB11 MAGED2 NRN1 VAMP5 GOT2 RAB2A ATP2A2 WASL EIF1AX CDK14 COX7A1 ATP5F1 ATP5I APP VIM PSMA7 MAGED1 COL24A1 HSPE1 COBLL1 ANAPC11 SEC61G TSPO MIF KLF2 PAQR8 STAB1 CALCRL CDKN1A RNASE1 ICAM2 COX8A RAB3A S100A13 APLP2 UBA52 RPL26 RRAGA PDCD5 ITM2B PAQR9 TPI1 ETS2 MT1L LDOC1 RREB1 OLFM1 CHMP4B MRPL12 COX6A1 CCT5 DYNLRB1 FAM198B RPL13A NDRG3 CP ACTG1 RP11-632C17__A.1 COX6B1 PPIA RPS15 CAPNS1 RPL6 VWF RABAC1 FLOT2 GDI1 WLS TGFBR2 ADIRF OST4 CDH5 PMEPA1 CTC-575D19.1 LDB2 FAM174A MTUS1 EID1 MRPL33 ATP6AP2 NDUFA1 NHP2L1 ARPC4 NGRN PET100 ALDOA HLA-B TF SNAP25\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A HBA2 RPS28 HBA1 MT1X RGS5 HIGD1B TMSB10 IFITM3 HBB TMSB4X LGALS1 IFITM2 MT-CO1 MTRNR2L1 RPL41 BSG MT-ND4 MT1E SIGIRR MT-CO3 SLC38A11 IFITM1 JUNB RPS26 C14ORF2 IGFBP7 PFN1 MT1L PTN UQCR11 TCEB2 SEPW1 RPS15 UBC ITM2B GGT5 RPL13 COL4A3 SLC6A1 COX7B EPS8 HSP90AB1 TSC22D1 NDUFA4L2 ATP6V0B EPAS1 ADAMTS9 C10ORF10 PTGDS AES AXL RPL7 COX4I1 ID1 CLDN5 RELL1 H2AFZ FAM111A RPL15 CA2 RPS6 SPTBN1 RPL37A GPR133 NR2F2 TUBA1B FLT1 BGN PI4KA CYSTM1 MT-CO2 IFI6 NFIA DLC1 CALM2 COL5A3 MT-ND2 SLC1A3 CCK RPL23A P2RY14 MT-ND3 NGFRAP1 SERF2 SPARC COX6C AGT FTH1 GDI1 MT-CYB RHOJ MT-ATP6 COX5B YWHAG POLR2M RPL8 PJA2 LANCL1 RP11-111M22.2 SLC6A12 ACSL5 STX1A CNP ACTR1A MTCH1 C19ORF43 PPIA COMMD6 CTC-575D19.1 ATP5B RPL12 USMG5 OST4 CD9 TRIP6 RSL24D1 GAPDH RPS12 ATP6AP1 SLCO1C1 NPY GPX1 LRRC32 NID1 TNS1 ALDOA ELOVL7 NDRG2 TBX18 CPE CRISPLD2 GNB1 DHCR24 COX6B1 ZNF385A PIK3R1 COX7A1 ATP5G1 RPL11 ABCB1 PRDX3 EIF1AX TMEM147 COX7A2 TGFBI ETS2 HINT1 APOLD1 MTRNR2L8 EDF1 POLR2L GCHFR ATP6V1G1 MT-ND5 AHNAK CD14 GPER1 RPL17-C18ORF32 WSB2 NHP2 CYB5R3 NOTCH3 ATP1A2 FOS MRPS21 CD59 A2M ZBTB18 SPARCL1 PSMB7 CD63 LCP2 COX14 MTRNR2L12 SAP18 TUBA1C LGALS3 CD99 MAP1B KANK3 DYNLT3 NDUFA1 RPL13A PLS3 CALM3 MAP1LC3A RPL31 ARF1 SNAP25 SYN1 PALD1 TOX2 PPP2CB PECAM1 UTRN S100A10 QDPR ATP5J PLOD2 COX7C MIEN1 TRPV2 DISC1 CAPNS1 ISG15 HEY2 RPL6 SERINC1 AP3S1 TRIB2 UQCRC1 MFGE8 PSAP HSPA2 ACTG1 FTL DKK3 PKM MBP SMIM3 CAV1 TPI1 RPS5 C16ORF13 HIGD1A ACTB RPL10A RPL17 ITGA6 NACC2 EIF1 WWTR1 INPP5F CCDC85B GPR4 POMP CSRP2 RBX1 EID1 PTMA GUCY1B3 PLAUR ADORA2B RPL21 CST3 RCAN2 ANXA6 ATP5I ARHGDIA FBXO2 TUBA1A SKP1 GAP43 RAN ATP6V1E1 CCDC184 NDUFAB1 ATP5G2 UQCRC2 OSMR GBE1 MRPL52 RPL32 ATP6V1B2 SLC25A6 DNAJC6 TBX2 MTRNR2L6 IFI27 UBB NGRN MIF DNAJC21 TBC1D15 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A HBA2 HBA1 HBB MT1X TMSB10 ADAMTS9 IFITM3 RHOB FTL CD59 RGS5 CLDN5 MT-CO2 APOLD1 LGALS1 TSC22D1 PLOD2 NDUFA4L2 PTMA RPS28 ADAMTS1 COL6A2 MT-CO3 GAPDH RPL13A AKAP12 MT-ND3 SPTBN1 SLC6A12 B2M AES MT-ND2 BSG IFITM2 SPARC MT-ATP6 RPS6 ZBTB20 STC1 CD63 RHOJ TM4SF1 NDUFA13 PPP1CB ADIRF EPAS1 DLC1 MT-ND4 PEF1 RPS2 MTRNR2L1 DRAP1 TIMP3 YBX3 EIF4G2 C19ORF43 TIMP2 SUMO2 RPL35 CALM2 CPE MTRNR2L12 MT-CO1 ATP5E GPM6A TPI1 POLR2L MT1E ICAM2 UBE2V2 YWHAB RPS26 EIF1 BLOC1S1 HINT1 NUAK1 A2M SLC2A1 RPL21 CDKN1A CA2 MRPL52 RPL26 DLD MT1M COX7A1 STK24 SERINC1 POMP RPL32 ARPC5L LINC00116 TNS1 COX4I1 NDRG2 COX5B CSDE1 ACTB CTDSP1 MYL6 ITM2B PKM PPDPF FLT1 TGM2 ATP1A1 TMSB4X GPX4 EGFL7 RP11-111M22.2 RPS15 IFITM1 UQCR11 GPR4 WWTR1 SLC7A5 IDS MIF IFI27 GABARAP RPL38 ACTR1A BHLHE40 TMA7 RPS10 TPRG1L REPS2 VWF TCEB2 SEPW1 NBL1 YWHAZ PRKCDBP RPS12 AVPR1A PITPNA ETFB USMG5 UBC MTRNR2L8 FAM19A4 TMEM59L MFN2 NAPB MARCKSL1 C18ORF21 ATP1A2 MFGE8 SLCO4A1 EFR3A COL4A3 RPL13 TTN PRKCE ITFG1 TUBB4B COBLL1 GUK1 RPL41 RHOC ARHGAP35 PLAUR SERINC3 APLP2 ATP1B2 KIF3C CYSLTR2 RPS19BP1 MT1A CALM1 RPL3 NDUFS6 ITM2C CLEC14A PPP2R1A MAP4 RNASE1 SV2B MYL12B COPE CCK DYNLRB1 EID1 GABARAPL2 LHFP EIF4A2 TUBA1B RAB11A DYNC1I1 UBA52 PRKACB UBE2N HILPDA CORO1B SNCG UBB CAPZB TRIB2 CRYM SLC39A10 NDUFB1 NEK7 MT-ND5 GSTO1 RAB5C RHBDD2 TKT TPT1 INPP5F CST3 SLC1A3 NRCAM SARAF NFIA APP GABRE ATP10A POLR2M TGFBR2 ARF1 MAP1LC3B SLC6A1 APBB1 SDCBP PPP1R14A PRDM1 ATP6V0E2 RPL18A FKBP8 FBXW11 ELTD1 C19ORF53 SNCA SIGIRR RAB7A COX6B1 TMX4 SULF2 NACC2 RLIM SPCS2 PPP2CB INSIG1 SRP9 CDK17 C11ORF96 GABARAPL1 HSP90AA1 SNRNP25 FBXO2 TOPORS-AS1 STRAP NEUROD2 TRMT112 NGFRAP1 COL6A1 PI4KA NHP2L1 CCT5 AP1S1 RTN1 NEFM NDUFB10 LAMTOR1 HIC1 ASAP2 GADD45B ZFAND5 SOD1 SELENBP1 ARHGAP29 STOM TUBA1A PAM NRGN FAM96B COX7C SELM KLHL5 TLE4 ATP5I DYNLL1 CD9 CA4 BEX4 NRN1 CYCS PSMD2 PLAC9 FTH1 SLC7A1 NDUFA1 MZT1 CCDC69 PPA1 MYO1B NOTCH3 MTRNR2L6 SYN1 IQSEC1 RPL10A COA3 STMN1 TSPAN7 THOC7 LRP4 OSMR TXNIP RPL36A ALDOA COQ10B RELL1 CERS6 RAPGEF5 ATP5G2 RPS3A TM4SF18 SH3BGRL2 TCEB1 PRKCB RARRES2 PTGDS GGT5 NDUFA2 RPL37A GBE1 KCNJ10 PIEZO1 TOMM20 COL5A3 RPL11 DIRAS2 ST6GALNAC1 SEC61G MT1F CRIP2 SNAP25 DNAJA1 COX8A SYNJ1 NDUFA12 ACLY C1ORF56 DNAJB6 PSMB3 AC244489.1 NR1I3 SYTL2 RAB3B ZNF385D ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 TMSB4X ARHGAP29 IFITM3 B2M ZNF385D TNS1 APOLD1 FTH1 YBX3 ATP5E RGS5 CD59 GPR116 RPS28 RPS6 EDF1 RAB11A VWF DCLK1 SLC2A1 MTRNR2L12 RPL21 AKAP12 FKBP1A ID1 RPL32 MT-CO1 TMEM88 RPL13A SRGN TLE4 CAV1 SPTBN1 MTRNR2L1 ACTB UBA52 RPL3 A2M CCDC85B MT-CO2 EIF1 COX7A1 TM4SF1 RNF152 PRDX1 KANK3 BST2 BCKDK TUBB6 KLHL5 SPARCL1 PGM2L1 HIGD1A ABCB1 IL13RA1 SEMA5A RPL17-C18ORF32 RPL41 ELTD1 AHNAK RPL17 YWHAQ ATP1A1 SPARC SIGIRR CDH5 BEX4 NAA38 CD63 RAB4A PARP14 DYNLL1 EIF4A2 RHOB RPL8 PGRMC1 IFI6 ISCU TMEM70 CA2 HSP90AB1 GNG11 SLC12A5 PSMA7 RPL10A ATP6V1A RPS26 EMCN COX4I1 ID2 PDK4 C4ORF3 RAMP2 PCDHGA10 C10ORF10 PPIA ECM1 RPS2 STUB1 PSMD2 SAP18 STMN1 RGCC CMPK1 SPOCK2 MT-CO3 WBP2 CDK5R1 PCDH18 ATP5C1 RPS15 ADM SRP14 OAT C11ORF31 GNB1 ETS2 GAPDH MT-ND3 SERF2 IGF2 EDN1 NDUFB2 IFI16 CSDE1 POLR2L RBX1 UTRN ERG TUBA1B CHGB MT-ND4 LMO2 MT1E SLC25A22 PLEKHG1 TGM2 ENC1 RPS27A ESCO2 POMP PNP FAM43A NOTCH1 CST3 PAK1 RNF181 STXBP1 ZFP36 PODXL MYL12B MYCT1 PPDPF COX7A2 RPS3A TCN2 ATP5H PRELID1 RPS4X BSG ZMAT2 EPAS1 EBF1 C19ORF70 OST4 CLDND1 MRPS7 FIBP TAGLN2 PPP1CB MT-CYB EIF4G2 ZFP36L1 TM2D3 GMFB ARF5 IFITM1 PET100 RP11-20I23.1 RNASEK-C17ORF49 ATP6V0C GJA1 MIF RPL18A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HBA2 HBA1 MT2A HBB TMSB10 BSG TMSB4X MT1X IFITM3 FLT1 MT-CO1 IFITM1 MTATP6P1 MT-ATP6 RGS5 MT-ND4 RPS15 PTMA MT-ND2 LGALS1 RPL13 RPS28 B2M ADIRF MT1E FTH1 RPS6 MT1F APOLD1 RPL37A MT-CO2 CALM2 CD63 RPL21 TBC1D15 DNAJC21 TCEB2 PTGDS EIF1B RPL36A IGFBP7 STC1 RPL3 RPS10 CTC-575D19.1 EIF1 SERF2 SLCO4A1 COX7A1 PTN RPL41 UQCR11 USMG5 TMA7 C1ORF64 STOM MT-ND3 CLDN5 GRAMD3 RHOA CD59 PON2 GADD45B TSC22D1 EGFL7 MT1M MAP4 MRPS28 RPS27A NOTCH3 TM4SF1 TNS1 DLC1 COX8A ARL8B FKBP1A ZBTB20 SUB1 TRPC3 MT-CO3 GAPDH CRIP2 MTUS1 CALM1 PEA15 PRKAR1A RPL7 C8ORF4 MT-ND1 ETS2 TUBA1B PECAM1 AP2S1 MT-ND5 C11ORF96 ARF1 PAM PDK4 RPL6 BAD ABCB1 GUK1 PFDN1 PDLIM1 PLD3 C10ORF10 HSP90AA1 IFITM2 COX17 PODXL ISCA1 RPL8 NDUFA4L2 SERINC1 TIMP3 SRGN ADSS ARPP19 EIF1AX STC2 MTRNR2L12 COX7C UTRN ANXA3 NBL1 LAMTOR5 CPE PFN1 RPS12 ACSL5 POLR2I LINC00087 CYCS CDKN2AIPNL PDP1 SMIM3 SPTBN1 ELOVL7 YWHAG YWHAZ ANGPT2 ACTB TUBA1A UBC DYNLL1 TPI1 MTCH1 RNF11 IDH3A GPR116 TCN2 SARAF LAMA4 ICAM2 DYNLRB1 UBA1 PLOD2 SEPW1 MLLT11 CASP4 UQCRQ RPL35 PRDX1 ADM C14ORF132 MT-CYB SKP1 GLUL SUMO2 POLR2L OAZ1 RPL31 VDAC2 PPP2R1A SERINC3 RHOJ PDCD5 GMFG ALDOA PPP1R14A PRKCH STAB1 SDF2L1 ATP2B4 EMP1 EPS8 IGF2 C3ORF80 EMCN FAM162B CYB5R3 ITFG1 NGFRAP1 SLC2A1 BRK1 ADAMTS9 EIF4G2 FTL AP2M1 RAB11A NDFIP1 KLF2 RPL10A VWF COL6A1 GNG3 EPAS1 CP YWHAH WBP2 CORO1B OCIAD1 PTGES3 ATP2A2 ATP1A2 ATP11C TMEM200C TPD52 NRGN BANF1 ARPC5L COPE ATP5I MIF PPDPF SEC61G RPL26 RPL18A ARHGDIA STXBP1 S100A10 SPARCL1 MT1L NFE2L1 NDUFA11 CYP1B1 LAMTOR1 ST6GALNAC1 ZMAT2 POMP PRNP SHE TM4SF18 ITM2B TAGLN2 PRELID1 UQCRB DCN EIF4A2 UBE2N COX6C SMAD6 CAPNS1 ACTG1 TMEM123 TUBB6 HEG1 SLC7A5 UQCR10 AURKAIP1 MT3 MTRNR2L1 CDKN1A FAM127A VSNL1 RPL17 NDUFB4 NDUFA8 NDRG2 KLC1 PJA2 SOX18 RARRES2 SNCA PINK1 ENG TRAPPC1 STK39 DNAJB9 TBX2 RABAC1 CLU RPL15 ATG101 TSPAN7 C19ORF43 AIF1L NINJ1 NDUFB2 CA2 SOD1 GRIN1 GSTP1 CADM2 RPL17-C18ORF32 PLAUR ATP5B MTRNR2L8 LINGO1 RANBP1 HIST1H2AC ATP1B2 GNG11 CAMK2D TKT UBA52 GJA1 SRP9 APLP2 EPS15 CLTB COPS7A PGRMC1 DCLK1 PVRL2 DCTN3 RPS26 C4ORF3 RPL38 CDH5 APOL6 BST2 PLEKHG3 TTN NTN4 APP MYL12B EGR1 PRKACB PSMB5 PDZD11 CAPZB PEBP1 C6ORF1 MYL6 NDUFB11 PLAC9 PARP14 RTN4 DUSP6 SHARPIN RPS4X CTDSP1 UBL5 NDUFA1 HSP90AB1 COX4I2 GDI1 RHOC GSTO1 IL1RL1 RPL32 HNRNPA1P40 RP11-20I23.1 RPL23A RNASEK-C17ORF49 ATP6V0C IDS SNAP25 GTF2H2C_2 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A MT-CO2 MTRNR2L1 MT-ND2 TMSB10 MTRNR2L12 BSG MT-ND4 IFITM3 YBX3 FLT1 MT-CO3 ACTB MT-CO1 ITM2C MT1E TUBA1B EID1 IFITM1 MT1M MT1L RABAC1 MTRNR2L8 LGALS1 MTRNR2L6 ARL6IP1 VAMP2 RPL11 TGFB1I1 VWF TMSB4X MYL6 SLC1A3 MT-ND3 SLC19A1 SPARCL1 NDUFB2 RPL13A CYFIP2 UBA52 IFITM2 RPL13 COX6C MT1X TOMM7 S100A6 GADD45B ATP5E COX4I1 CALM2 SNAP25 KLHL5 TM4SF1 ITGA11 FSCN1 C1ORF115 FTL FAM107B DLC1 RP11-632C17__A.1 SV2B IFI6 RPL7 HIC1 MRPL12 LANCL1 MFGE8 NOTCH3 NAPA RPS28 MYL12B RAB2A GPR133 RPL3 PODXL CNDP1 AES RPS27A SLC7A5 GDI1 FBXL15 ARL8A MT1G EPHX2 NDRG2 VSNL1 FAM162B GUK1 CLIP3 A2M RPS12 ADM ETS2 TMEM204 ARHGAP42 DCTN1 RGS5 ARHGAP29 NDUFB8 UQCRFS1 UBL5 RANBP1 ATP5B NDUFB7 SPARC LGI3 RAB3B ADD2 MTFP1 VEGFA MT-ATP6 RPL10A NPTXR ICAM2 SLC2A1 SRP14 MMD SERINC1 CD63 CLEC14A RGS4 C10ORF54 S100A10 BRK1 ISCA1 PGK1 MT-CYB MT-ND1 COL6A1 COX5B HSP90AB1 DUSP1 SLC25A6 PTGES3 MYEOV2 MT1A PTGDS CAPNS1 NHP2L1 GAPDH HSPA8 CFH SLCO2B1 POMP TANC1 SELM ACTR1A NUDT21 RAP2A ATP6V1G1 C7ORF50 TSPAN7 RPS6 DCLK1 INA ARL4C CKB PACSIN1 CALM1 TMEM258 PRNP ARPC4 PEA15 DIRAS2 MRPL52 RPL37A COX6B1 PTN TPI1 RPS2 TM4SF18 GBE1 ALCAM STMN3 ACSL5 POLR2J SUMO1 EIF1 POLR2L HIGD1B CERS6 COX7B YWHAQ BEX2 HINT1 RHOC S100A13 TCEA2 CA4 NR2F2 RPS19BP1 SLC17A7 ATP6V0C RPL6 RPL21 RP11-20I23.1 ALDOA TBC1D15 DNAJC21 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A CLDN5 RPS28 BSG MT1X TMSB10 UBC APLN RPS6 TMSB4X FLT1 APOLD1 EIF1 RPL13A PLEKHG1 ANGPT2 RPL21 IFITM3 CD59 MT1M ELTD1 ARHGAP29 CDH5 RAB3B PRDM1 MT1L RPS26 ELOVL7 RPL23A RGS5 MT-CYB RPL17-C18ORF32 PNP SARAF RPL11 RPL3 EGFL7 XAF1 MT1JP ACTG1 ID1 VIM SPTBN1 SMIM3 RPS4X MT1F IL1RL1 ADM BOC RPL12 FOS SLC7A5 MT1E PODXL MT-CO2 ZBTB20 KLHL5 RPL17 RPS15 TRIB2 LGALS3 PSMD2 ADIRF VWF RHOB C12ORF57 YBX3 SLC2A1 AKAP12 LGALS1 TGOLN2 GAPDH PJA2 CORO1B SLC25A4 SRP9 TCEB1 VWA1 RPS5 BRK1 MIF ZFP36L1 RAB6A LHFP CTSD TMEM51 ITGA6 EMCN PSMD8 RPL35 SUMO3 CCDC25 TSC22D1 C4ORF3 COX5A TPI1 ITM2A TOMM7 PAQR8 PDP1 PSAP CALM2 DUSP1 LGALS9 TRPT1 SPARCL1 RHEB SLCO4A1 MT-CO1 GPR56 PNMA1 CALM1 SMYD2 TMX4 TPT1 RPL38 UBA52 TMEM123 TUBA1A ACLY PVRL2 SRP14 MAP1B ISG15 C14ORF2 TUBB4B ATP5J TAGLN2 ITGB5 MT-ND4 MTUS1 SDCBP ENG PPM1A LCAT MYEOV2 IFITM2 GJA1 RNASE1 LSM4 SRGN MAPK1 ADAMTS9 TCEB2 DUSP6 ICAM2 C1ORF64 CCDC68 RP11-111M22.2 NDFIP1 CFL1 MT1A PRKAR1A ACSL5 RPL13 ATOX1 USMG5 UQCR10 TGM2 QDPR SLC38A5 EDF1 S1PR1 PSMA7 RAB1A TRMT112 TMSB4XP4 JUND RPL37A PLAUR PLOD2 PPIA ACTB FTL MYCT1 AHNAK PCMT1 NDUFAB1 OLA1 GMFG SKAP2 PTGES3 ATP5E ABCB4 RPS27A GPX1 SLC39A10 PRTG PFN2 STC1 RPL7 MT-ND2 PTMA PKM BLOC1S1 RPL26 HES1 RTN4 SLC1A3 SEC61G CMPK1 INPP5F SPOCK2 METTL23 NOTCH1 SLC7A1 ARFGAP2 BIRC5 SERF2 MTRNR2L12 MTRNR2L8 IDS RPL41 IFI27 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 TMSB4X IFITM3 APOLD1 RPL13 BSG ACTB PDGFRB YBX3 MT-ATP6 C12ORF57 MT1F MTUS1 ADAMTS9 CRIM1 SRGN CD59 RPL15 FTL SEPW1 NDUFA4L2 EPAS1 ATP1A2 FLT1 EIF1AX HSP90AA1 MT-CO2 CLDN5 MT1X RPL41 FTH1 RPS28 TXNIP RPS15 CPE IFITM2 SYTL2 ACP1 TUBA1B SKAP2 LAMA4 SELM SIGIRR NDUFA1 RPL7 NDUFA13 RAPGEF5 WBP2 DGUOK EIF1 DYNLRB1 ARL6IP1 MTRNR2L1 SLC19A1 RPL13A PTMA TM4SF1 GNG11 EDN1 SPARC RPS26 RPL8 C1ORF54 MYL6 SNAP25 PET100 SPARCL1 CLDND1 RPL21 RPL3 A2M MT-CYB SERF2 MT-ND4 CDH5 NDUFB2 CD9 COX4I1 MT1L COL4A3 MT-CO3 PSMC5 CALM2 TCEB2 COPS8 TRMT112 DPYSL2 COX7B APLN SLCO2B1 GAP43 NDUFB10 HTR1F MT1M MPC2 C4ORF3 DNAJB6 CYSTM1 ATP5E OXR1 PODXL RPS27A AP2S1 TRIB2 LGALS1 UQCRH UQCR10 FIBP NDUFB7 VAMP2 COX7A2 B2M ATP6V1G1 RPL31 TMEM258 TAGLN2 COX8A ETS2 SIPA1 SARAF S100A6 UQCR11 PLAC9 RPS10 MTRNR2L12 CLTC DLC1 TSPAN7 PRELID1 CPNE8 AP3S1 GNB1 STMN1 TNS1 GRINA TSPAN4 PPIA FAM96B CLU MLF2 ACTG1 NPTN UBC MFGE8 TCEB1 MYO1B ERG ID1 NDUFB4 ATP5J ELOVL7 DCN TUBA1A ROBO3 MZT1 SPTBN1 UBA52 DYNLL1 UBL5 MAPKAPK2 CTDSP1 TGOLN2 FKBP1A VSNL1 CFL1 TGM2 KRT17 RPL12 MTRNR2L8 PECAM1 GABARAPL2 ATP1B1 NUDT4 PFN1 SEC61G OLA1 TMA7 EIF1B TM4SF18 ATP10A DKK3 FAM127A SLC7A1 TBCB NFE2L1 NDUFAF3 MT-ND1 RPL32 TPT1 GLUL PSMB7 TCEA2 RNASEK-C17ORF49 MT1E ANXA1 SHISA6 TUBA1C KLC1 MTRNR2L6 PRKAR1A TOLLIP SPOCK3 GJA1 CDC37 UBE2M ITM2B CASP7 PHPT1 PSD3 SAMD9L CHMP5 NOTCH3 RPL38 CALM3 ZIC1 SLC2A1 TSC22D1 GPM6A SLCO4A1 SH3BGRL3 GPR116 GAPDH SPOCK2 PPP1CB SERINC3 AKAP12 SUB1 ENC1 MT-CO1 BGN GPER1 MRPL20 S1PR1 EIF4A2 YWHAQ CTC-575D19.1 QKI EIF5A2 FXYD6 PMEPA1 MORF4L2 ATP5I NARS MIF SLC25A6 EFHD2 ALDOA RPL17-C18ORF32 SNRPN RPL17 CHGB NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1X CLDN5 ADAMTS9 RPS15 SLC7A5 MTUS1 RPS6 ACTB EIF1 BSG EPAS1 IFITM3 RPS28 SLCO4A1 ANGPT2 MT1E AKAP12 TUBA1B RPL35 MT-CYB CALM2 PLOD2 RPL41 ATP1A1 JUND RGS5 CTC-575D19.1 IGFBP7 ELOVL7 ENG VWF TMSB4X CD59 TMEM123 B2M CDH5 YIPF3 IFITM2 TUBB4B ATP6AP2 DUSP6 SPARCL1 RAB5C TGM2 SERF2 A2M ATP5H DCLK1 MT-CO1 MTRNR2L8 NDUFB1 GUK1 RPL38 RPS26 SRGN PGK1 MTRNR2L1 PRDX5 RPL37A COX5B NDUFB8 PPIA EDN1 TMA7 CRIP2 YWHAH CD9 PET100 RPL3 ARHGAP29 STC1 YBX3 EMP1 POMP C10ORF10 NOS3 TPI1 RPL13A SYNJ1 FLT1 MTRNR2L12 PTGDS RORB UQCRB XAF1 PNP EGFL7 MIF SNX10 RTN3 MAP2K4 RELL1 CRIM1 SDCBP SLC38A5 TSPAN12 GNB1 C1D PRELID1 FIS1 BAD UQCRH TAGLN2 RPL26 PKM MT1M ATP10A CPE TRIM47 RPL15 IL4R APOLD1 COX8A MZT2B SPTBN1 PRNP CTBP1 UQCRC1 ARHGDIA NDUFA2 LAMTOR5 NDUFB2 IL3RA BNIP3 PSMD8 ITM2B PARP14 EPS8 NCDN MRAS DNAJC6 GPR56 ABHD8 STOM STUB1 APLN SLC6A12 PLSCR1 MT-ND5 PTRF AES RPS4X SUB1 TM4SF18 TOLLIP OLA1 MYCT1 TCEB1 TMEM120A RNF11 FKBP8 GPM6A CA2 WBP2 IFITM1 YWHAG COX7B NDUFS5 FKBP1A FTL GJA1 ANAPC11 SDPR CRKL TM4SF1 PON2 USMG5 PRDX2 CADM2 MT1L UQCR11 EHD3 SLC25A5 MAP4 ICAM2 SYT1 ENO1 PHYHIP MT-ND2 MT-CO3 REPS2 PARP4 MT-CO2 TMEM70 LRRC32 HLA-B MORF4L2 MT1F DCTPP1 RAB11FIP5 TSHZ2 CD44 RPS12 GAPDH CTSD RHOJ MT-ND4 PTN MYL6 VDAC1 TIMP3 WSB2 HDLBP DDAH1 ENO2 RPL13 KLF10 RAB13 PNKD APP SRP9 TKT RPL23A CPNE2 CDC37 HSPA8 TUBA1C UBE2V2 TMEM65 KLHL5 TCEB2 S100A6 ACTG1 DNAJC5 PODXL ATP5J2 GDI1 ENSA ATP5B PFN1 SPARC RPS27A SLC2A1 FBXO8 WARS SLC25A6 GYG1 SOD1 YWHAB CDK5 PPA1 NDUFB4 ELTD1 DPY19L1 SEPW1 ATP5G1 GIMAP4 PEA15 IGF2 SARAF ADIRF PRDX1 MT3 MTPN VEGFA S1PR1 SNX3 VAPB BCAP31 AGT DUSP1 VDAC2 NHP2L1 HSP90AB1 COL6A2 FTH1 TRIB2 MAP2K2 SELM CHN1 BRK1 SCN3B HIF3A MYEOV2 OXCT1 GADD45B TEAD4 CP CLIC4 UBB PLIN3 TUBA1A FAIM2 RP11-111M22.2 RPL31 JUNB CALM1 ALDOA RPS3A PLEKHD1 RAB3B SYTL2 RP11-20I23.1 ZNF385D ATP6V0C PGAM1 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT-ND2 SRGN MT1E MT1X CLDN5 MT-CO1 RPS6 FLT1 IFITM3 MT1F MT1M MT-ND1 APOLD1 ACTB BSG TUBA1B CD59 MT-CO3 YBX3 B2M RGS5 PLSCR1 RPL41 IFI27 S1PR1 MT1A CA2 SPTBN1 SERF2 TGM2 APP IFITM2 GADD45B PPP1CB GAPDH ELTD1 MT-ND3 BTNL9 PEBP1 MTUS1 EGFL7 LEF1 NOTCH1 DUSP1 SPARCL1 ITM2A UBC SKP1 RHOB ATP6V1B2 TMEM123 MT-ATP6 SNAP25 RPL37A TOMM7 RPS28 GNG11 IFI35 ARHGAP29 USMG5 WARS IFI16 MIF PECAM1 RASGRF2 SNCA BHLHE40 PARP14 UQCRB SSTR2 HLA-B NGFRAP1 TPT1 ATP5B XAF1 TMA7 PREX2 PPIF CCND1 SAP18 RPS27A TCN2 EMCN CDKN1A COBLL1 GPX4 TUBB2A PKM LHFP SMS TMEM130 CP DYNLL1 RTN4 ZCCHC24 CTNNB1 PTGES3 SLC24A2 MT-ND4 ABCB1 SLCO4A1 GRPEL1 UQCR10 RPL13A TM4SF1 ARL8B PLAUR KLC1 CPNE8 CCDC85B FKBP1A DUSP6 NR2F2 CALM2 PRDM1 RPS12 GPM6A MMD CLU CCDC68 ADAMTS9 NDUFA4 TGOLN2 CNRIP1 RPL31 RAB2A RGS12 MED10 ZBTB18 UBA52 COX5B PPP3CA LPAR6 BEX2 ATP9A RLIM VAMP2 ADM SCN3B ITGA6 RHEB PLOD2 CSDE1 COX6A1 RPL13 RNASE1 PTMA AHNAK RPL10A ARPP19 ITM2B ACLY COX8A GPR4 STOM KRAS EPAS1 PPP3CB DYNLRB1 HSP90AA1 CRIM1 MTATP6P1 IFI6 SLCO2B1 LAMA3 RNF144B SLC31A2 VIM RPL11 CLPTM1 CDH5 SDPR CDK17 PSMD12 COX5A EDN1 FTL PODXL GABARAPL1 MT-CYB RPL32 ATP6V1G1 ZFP36L1 AKAP12 CALM1 D4S234E COMTD1 ADAMTS1 FBXW11 IL4R EIF4G2 COX17 PON2 VWF PPP2R2B TSPYL1 ANGPT2 SDCBP HSP90AB1 ARL6IP1 TAGLN2 HEG1 FTH1 TUBA1C DCLK1 TSC22D1 ITGB5 JUND ASAP1 MARCKSL1 RPL35 RAB13 PRKAR1A COX6B1 ATP5E IDS RPL17 RPL17-C18ORF32 RPL18A MTRNR2L6 RP11-111M22.2 TUBB AC244489.1 RPL21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HBA2 HBB MT2A HBA1 BSG MT1E IFITM3 RPS28 TMSB10 GAPDH PODXL MT1X RPS27A CLDN5 RPL17 EIF1 EPAS1 TPI1 ATP1A2 MT1F TMSB4X MT-CO1 MT1L RAPGEF5 MT-CO2 SMIM3 FLT1 DYNLL1 IFITM1 TPT1 RPS15 SRGN RPL35 CETP COX5B UBA52 RPL11 MT1M CRIM1 RPL37A LEF1 TMA7 SLC2A1 PRKAR1A SH3BGRL3 MYL12B IGFBP7 SEPW1 ATP1A1 S1PR1 VWA1 B2M TNS1 CPE SLC25A4 IFITM2 TUBB4B TBCA ANAPC11 COX7A1 POMP SELENBP1 SPARCL1 CD59 LGALS1 C4ORF3 COX7C SPOCK2 HN1 YWHAB FTH1 ACTB VAMP2 NDUFB4 PTMA ACTG1 S100A10 MTUS1 RPS6 HIGD1B DYNLRB1 CDKN1A ENC1 MT-ND3 RBX1 UQCR11 POLR2J YWHAZ TSC22D1 CD63 NOTCH3 C14ORF2 CLU SERF2 A2M USMG5 ANGPTL4 CALM2 SERINC1 RPL3 ARHGAP29 YWHAG GPR116 SLC7A1 CD93 GADD45B SPARC EIF1AX C10ORF10 RHOB ZIC1 EGFL7 SRP14 GNG11 ITM2B PTGDS RPS2 FTL APOLD1 NR1I3 MIF MYL6B RPL12 FOXC1 VEGFA CTSD CALM1 SMYD2 ZFP36 ETS2 PFN1 PITPNA PROM1 EDNRA PHPT1 TBX2 CAMK2D AHNAK RP11-111M22.2 SCN4B DEXI TCEB1 CD9 VSNL1 AKAP12 H2AFZ OAZ1 RAB34 TUBA1A MYL6 COBLL1 MORF4L1 RGS5 OCIAD1 UQCRH CLSTN1 DUSP1 TOMM70A RPL13A GRINA COX7A2L TP53I11 C10ORF54 SSBP3 GPX4 RP11-20I23.1 DCN PSMD12 COX7A2 IL13RA1 ITM2A TMEM160 RPL21 CFH KLC1 VWF PPP1R14A RPL41 ATP6V0C ATP6V1G1 GNAQ GSTP1 HSD17B14 RPS4X RPL13 YBX3 IFI35 MMD FABP5 SLC25A11 NME1 SUMO2 ARPP19 SNTB1 ADAMTS9 COX6A1 MRPL55 EID1 PPP3R1 GRIN2A PPA1 PPP2R1A ZFP36L1 FKBP8 NDUFS5 NRCAM LMBR1 AP3S1 COX6C EFR3A C1ORF52 APP PPP2CB SNAP91 OR6D1P INSIG1 GUK1 BST2 MPI ANGPT2 LRRC32 SLC38A5 VDAC2 COL6A2 ARF1 MT-ND2 RAN C1ORF64 DCTN1 IGF2 COPS7A S100A16 PRDX2 GRM8 PTN CPNE8 ABCA8 TERF2IP CTNNA2 SEC61G STMN1 MRPL20 SKP1 HIF3A DISC1 BEX4 TAGLN2 DNAJB6 TGFBR2 KANK3 RAB11A SLC19A1 TMEM204 NMBR NDUFB11 IFI6 MTRNR2L1 ADM DCLK1 SLC7A5 PKM SLC6A1 CDH5 PMEPA1 SLC6A12 NEK7 SLC1A3 NDUFC2 ID2 BTNL9 PPDPF MYEOV2 ELOVL7 ATP5J2 EIF4A2 CYCS MT1A GABARAPL2 RHOJ SLC39A10 POLR2K NBL1 TXNIP LMO4 MFSD2A SPTBN1 RPS3A NDUFA1 DPYSL2 ECM1 XAF1 PLIN2 MRPL33 NDUFA13 RHOC TMEM123 YAF2 TIMP1 EGFR ICAM2 FKBP1A IMMP1L CRIP2 FSCN1 KCNAB2 RTN4 RPL38 NAA38 TMEM258 COPS8 CLTB UTRN NDUFB8 PON2 OST4 NDUFA12 TUBA1B GNG3 CA4 PAQR8 CDC42SE2 RP11-219A15.1 MTRNR2L6 IDS RPL18A RAB3B SYTL2 ARFGAP2 RPL36A IFI27\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1E MT1X ACTB PODXL APOLD1 TMSB4X FTH1 MT-CO3 MTRNR2L12 TMEM123 MT1M FLT1 RPL37A ANGPT2 UBC RGS5 B2M CLDN5 IL1RL1 SPARCL1 IFITM3 BSG PTN RPL21 TUBA1B RPL3 CA2 RPS28 RPS6 ACTG1 VWF SLC2A1 TM4SF1 SPARC YWHAH CYB5R3 MT1F AC244489.1 TCEB2 EIF1 RPS4X SERF2 ERH YBX3 MT1L IFITM1 AKAP12 UQCRB SDPR TPI1 DCLK1 RPL32 COX6B1 MT-CO2 CD63 DNAJB6 DUSP1 STC1 SLC1A3 S1PR1 C1ORF64 ADAMTS9 RPL23A DSTN TGM2 QKI EPS15 MT-ND4 MTRNR2L8 RPL35 PTGDS FKBP1A GAPDH RPL11 CALM1 FAM84A PLSCR1 COX8A DLC1 NFIA BANF1 APLP2 ACSL5 RREB1 ATP5B RPS15 ECM1 COX6C SPOCK3 IFITM2 TPT1 DCN GNB1 PTRF POMP POLR2L HEG1 COX7C SRGN SUMO2 TMA7 RPL13A SLCO4A1 RPL41 ITM2B CRIM1 NDRG2 ETS2 PRDM1 MT-CO1 ATP5J2 BEX2 ETS1 MAP1LC3A C10ORF10 HSP90AA1 MTRNR2L1 MZT2B TERF2IP ATP1A2 NOP10 RAB3B MYL12B ARHGAP29 GSTP1 RPL10A EPAS1 RPL13 ATP1B1 CFL1 A2M PNP TSC22D1 RGS4 PEA15 PLEKHG1 LGALS1 TXNIP TOMM7 S100A10 DYNLL1 YWHAZ MT-ND4L RNASEK-C17ORF49 RPS3A RPS10 RBX1 MRVI1 PPP1R9B HDLBP STUB1 XAF1 RP11-632C17__A.1 RNF11 POLR2J PFN1 CYCS VSTM2A ID1 WBP11 RP11-111M22.2 F3 ITM2A ANAPC11 DUSP6 SELT TRPT1 OST4 ANK1 RHOC RAD23B ITGA6 PRDX1 CHCHD2 VAMP1 TRPC3 ENO1 COX14 RPL18A PRKACB SPOCK2 TTYH2 HINT1 PLD3 EMCN SSTR2 MYL6 RAN SDCBP TUBB2A BEX4 COL6A2 REEP5 SNAPC5 MORF4L1 KLHL12 SAP18 RPL6 PRSS3 NDUFC1 SLC19A3 HMP19 NDUFA2 CLEC14A DNAJB9 RPS26 TSPAN7 CYSLTR2 KANK3 SLC38A11 WARS MAP2K1 NEFL BIRC5 NDUFA8 H2AFZ PPP3R1 MT1G RHOJ MT-ND1 SLC6A17 CTSD PRRX1 PECAM1 NDUFS5 MAPK1 NOTCH1 NOS3 GUK1 SHARPIN MTRNR2L6 PRKAR1A CAMK2D CPE RPL39 ELFN1 RPL8 RPL38 MT-ND3 COMMD6 TCEAL2 EIF4G2 IL4R TRMT112 UQCR11 EMP1 ELTD1 JUNB ITGB5 SERP2 EPS8 CALM2 RPL12 RPL7 FASN RNF152 CPNE8 RND3 SUCLA2 BTNL9 TRIB1 MAP4 MIF SCD5 RPL31 RSL24D1 PSMC1 ATP5E IGFBP7 UBA1 EGFL7 SYPL1 CDH5 RPS5 MT-CYB RPL15 PRELID1 FKBP8 CAPZB PPP2CB CDC37 PSMA7 NDUFC2 EIF4A2 APLP1 BCAP31 BHLHE40 RPL26 MORF4L2 MYCT1 DLL4 HSPA8 GSTO1 PRNP CLIC4 COL6A1 CLTC MECOM GPX4 GJA1 GPR116 C1QBP ATP5O MT-ND2 DYNLT3 WWTR1 ICAM2 ARPC4 NEK7 PKM PJA2 PVRL2 TMX4 SERPINI1 SLC39A10 PPA1 VIM VAMP2 PCYT2 PTMA CD93 FXYD6 MARCKSL1 CD59 GUCY1B3 RGCC ATOX1 ZBTB20 KCTD12 RELN CLIP2 PPDPF AHNAK GPR56 COL1A2 EDIL3 RAB6A TUBA1A PXDC1 AP3S1 PPP3CA NPTN ATP5I MYO1B MLF2 TAGLN2 EDN1 GNAQ SLC19A1 DNAJC5 TUBB ASB13 CDKN1A GRM3 PPIA PSMD2 EFHD2 RPS27A MRPS21 VPS35 UBE2M PINK1 ATP1A1 PPP1CB SH3BGRL3 LZTS1 UBA52 GPM6A PON2 UCHL1 TMEM179B RPL36A NDUFA13 CFH RPL17-C18ORF32 TWF1P1 GABARAP RPL17 IFI27 ATP6V0E2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 ATP1A2 ARHGAP29 CLU GAPDH TBC1D15 PRNP MT-ATP6 SLC2A1 SLC6A1 CALM1 CCK TMA7 KLC1 PDGFRB ATP2B2 LMO4 TMSB4X IFITM3 MT-ND4 SYT1 A2M NFIA ITM2B RPL38 PGK1 ENC1 APP MT-ND2 NRCAM BST2 ATP6V1B2 SEPW1 CST3 PRDX1 MT-ND3 NAT8L ABCA8 EPAS1 GPIHBP1 RAMP2 OAZ1 SEC61G RIIAD1 ITM2C OR6D1P UCHL1 CLSTN1 PRKAR1A TMTC1 LDB2 COA3 GAP43 YWHAB DNAJB6 TUBA1B SARAF OCIAD1 FXYD6 RTN3 PREPL RTN1 IFI6 MAP1B SPOCK2 MT-CYB STOM ACTG1 RHBDD2 UBC NRGN COL5A2 PRKCH PIN1 RPL23A TIMP2 ECM1 RPS28 BSG MT2A CFH SPARCL1 RPL35 VPS35 PLD3 EGFL7 ARF5 ATP6V0C RP11-20I23.1 TESPA1 XAF1 CSDE1 CTNNB1 GSTO1 COX7B ATP6AP2 CALM3 PODXL CYB5R3 COX7A2 PGAM1 NDUFA1 EIF1AX IGFBP7 TXNIP SNN LMBRD2 WWTR1 MAL2 ZFP36L1 CA4 FAM84A DSTN RBX1 TUBB4A ARPC4 TMEM59L KIF21A TSPAN7 HIGD1A RAB7A SPCS2 NDFIP1 STUB1 COPS7A RPL10A ATG101 ATP1B2 BASP1 GSTP1 DGUOK CPE ZIC2 BAG4 UQCRB PRKACB SLC39A10 TMEM200C WDR4 CADM2 SELM PRKCB NDUFAF3 ESYT1 SOX18 TRIB2 ATP5B CLDN5 PPM1A MTRNR2L1 PTGES3 ATP6V0D1 RASGRP1 HAPLN4 IFI44L NEFM CX3CL1 COX6A1 PCDHGA10 GPM6A TCEAL2 CALM2 FOXC1 KANK3 RPL37A SCAMP5 TMEM204 TMSB10 RPL32 AP2B1 ADAM23 LGALS1 MFSD2A EDIL3 GBE1 CHL1 B2M AURKAIP1 CA11 THY1 CACNG3 PIK3R1 TMEM130 PEG10 SLC22A17 HMP19 BEX2 MMD CASP4 PPIA DMTN ETS2 IGF2 ATP6V0B DPYSL2 ARL6IP1 IL3RA SCN2B ITM2A NECAB1 CD63 ITGA6 DKK3 ATP10A CLTC FKBP1A MAPRE3 SLC9A6 TMEM179B CLIP3 MT-CO3 SYN2 SKP1 EXTL2 SAMM50 GRM3 RPL13A ATP6AP1 LPAR6 NGFRAP1 LHFP PET100 TMEM123 LZTS1 TMSB4XP4 MYO1B TM2D3 RUNX2 PLTP FIS1 FTH1 RPS5 UBA52 NDUFA11 PTN UTRN NDUFB8 LINC00087 RPS6 PARM1 ATP5J CREG2 ACSL5 PLAC9 COX7C TMX4 GNG11 STK39 MYL6 RPL17 SCD5 RPL21 ZBTB20 BAD NDUFA4L2 CLPTM1 RPL11 TSPYL4 TOMM20 SULT4A1 PALD1 FRZB LRRC59 OLFM1 ELOVL7 GNB1 ABCB1 MTCH1 DNAH11 ATP6V1F PTRF RPL3 SH3RF1 UBE2D2 VIM ARHGAP24 PLCB1 PPP2CA SYNGR1 KCNV1 CAP2 NDUFB10 SLC19A1 SRP9 UBQLN2 ATP5G3 RAB2A RGS5 RHEB NDN UBA1 MLLT11 DLC1 ACTB RNF181 PTGDS TMOD2 GOLIM4 COL12A1 IFI16 CNTN1 ATP2A2 STMN4 HSPA8 DNER RAB31 CAMK2D SERINC1 CHGB TRHDE SNCA GRIN2A RRAGA NDFIP2 LSR STMN3 RPL39 HSP90AB1 NIPA1 YWHAG DUSP2 RPS15 DNAJB9 SERPINF1 RARRES2 ZMAT2 SV2B YWHAZ MAPKAPK2 ATP5O RAB1A RTN4 RABAC1 YWHAH SLC6A17 CDK5R1 OLFM2 HLA-B AGT FSCN1 QKI GUCY1B3 SLCO2B1 NDUFA4 IFI27 RNASEK-C17ORF49 PSMB3 NSF IFITM1 RPL31 IDS PLEKHD1 HNRNPA1P40 DNAJC21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND3 PTMA MT-ND4 ATP1A2 RGS5 MT-CO2 MT-ND2 TMSB4X TMSB10 MTRNR2L1 WWTR1 CALM1 MT-CO3 FLT1 ATP5I FTH1 EGFL7 DUSP1 CD63 OLFML2A RPL35 MT-CYB MT-ND1 RPL37A RPL13A ATP5E B2M RPS28 A2M EPAS1 FTL CALM2 IFITM3 KCTD12 DCN CLDN5 SLC38A5 PTGDS ATP5B YWHAQ STOM RAMP2 SAMD9L SPARCL1 PALD1 ICAM2 ZBTB18 BSG PET100 MTRNR2L12 MYL6 SPARC RPL36A ARFGAP2 SPOCK2 HIGD1B PCDH12 EBF1 ABCG2 KLF2 ACTB RTN4 MT2A PLTP CSPG4 NFIA SLC6A12 MT-ATP6 PPP2R4 RABAC1 POLR2L PSAP DCTN1 IQCK MORF4L1 SYT11 EIF1 PSMB7 C11ORF96 DLC1 MGP RSL24D1 SLC40A1 LMBRD2 RAB31 RHOA RPL18A ATP5J2 GGT5 SIPA1 EFCAB13 ARHGAP29 NDRG2 MTRNR2L8 HDAC1 MTND1P23 MT1M ELTD1 BCAP31 NAA38 BGN NDUFS5 IGFBP7 SH3BGRL3 SERP2 MAP7D1 ATP6AP2 RAB11A SNRNP25 RGS12 LGALS1 ZCCHC24 UBC FRMD4B TIMP3 FOXQ1 SLIT3 EPS8 GNG11 LMO2 TM2D3 TXN GPR116 PTGES3 EIF1AX RPL7 PDGFRB MRPL52 CLEC14A NDUFA13 COL1A2 IFI16 NOTCH3 NUDT13 SERINC1 PHB ERH RGS4 UBA52 ITM2B GDI1 NDUFB4 RPL26 GPX3 TIMP1 DDR2 AIF1L PPA1 GABPB1 S1PR1 VWF PRNP ZNF423 DPYSL2 COX5B IFITM2 SLC6A1 RP11-111M22.2 GABARAPL2 COPS8 ATOX1 JUND TNS1 ARHGAP6 RPS3A CLU PTRF GNAQ VSNL1 CALCRL ATP6V0D1 GSKIP NSDHL SLC1A2 USMG5 XAF1 COL6A1 ATP1A1 RPS26 MRPL15 SPATA13 SRGN RPL13 CERS6 HEY2 RPL15 SQLE KIAA1731NL TMEM150C ZIC2 SERINC3 SRP14 TGM2 SEPW1 LHFP C19ORF53 CCDC85B C19ORF70 YBX3 S100A6 YWHAH RPL32 ABCB1 CLIC4 SLC19A1 IFI6 MFGE8 RAB5C COX17 BOC SLC22A17 CTNNB1 RNF152 ATP6V1E2 DYNLL1 GPCPD1 PODXL CD44 MLLT11 SLC2A1 SNRPE CD9 CSDE1 APOL6 NDUFA5 DYNLRB1 PPP2R1A PGAM1 TXNIP STMN2 TMX4 CMPK1 MRPL51 RPL31 ATP6V1C1 CHMP4B TSC22D1 RAB11FIP5 VAMP1 RPS15 SPTBN1 NDUFV1 PINK1 PECAM1 PTN DAB2 QKI SYPL1 CCM2L METTL18 ETS1 MTCH1 RPL23A NDUFB2 CD99 PREPL RPS19BP1 C12ORF49 VDAC3 ATP5C1 SELM ZBTB20 LIMK1 ENG METTL7A CAB39 RAB3B SYTL2 TUBD1 IDS GABARAP IFITM1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPS28 BSG MT-ND3 SPOCK2 MTRNR2L12 MT-CO1 SPARCL1 FTL MT-CO2 CALM1 B2M RPL3 CLDN5 VWF MT-ATP6 RPS6 MT-ND1 MTRNR2L8 RPL41 TMEM123 MTUS1 SLC7A5 MT-CO3 TMSB10 XAF1 SPTBN1 RPL13 HEG1 PTMA PCDH18 VIM RPS15 RPL21 SPARC ABCG2 PRKACB MT-CYB NDUFA1 MTRNR2L1 FLT1 KLF2 TUBD1 RGS5 RPL23A TIMP3 IGFBP7 RPS3A PCBP1 ZFP36L1 RPL12 GPCPD1 SLC7A1 RAB3B TMSB4X RPL13A SLC38A5 SOX18 ARHGAP29 CTSD SKAP2 CCK KRTCAP3 EIF4A2 UBC ADIRF GABARAPL2 DUSP6 SEPW1 SNAP25 CAV1 SLC2A1 ATP6AP2 SCD5 RHOJ NCALD GUK1 TPT1 HINT1 APLP2 TIMP2 PTN RPS4X CCM2L COX14 RAB11A A2M CA2 SLC6A1 ABCB1 APOLD1 CTBP1 VDAC1 EDF1 NR2F2 MYL6 ARL8A UQCRC2 DKK3 NDUFA13 TANC1 CALCRL GSTT1 RPL35 HSPBP1 PKM GAPDH SELM CD99L2 ZNF503 CPE CDS1 ATP5A1 SLC7A8 CTNNB1 PITPNA TSC22D1 TMA7 RPL18A SLC39A10 UBE2D2 NBL1 UHMK1 FAM149B1 DNAJA1 VWA2 ITM2A GPX1 ARL6IP1 TMSB4XP4 UBA1 FAM43A PAM EGFL7 PPP2CB OAZ1 PIK3R1 MT-ND2 SERINC3 TCEAL7 PPP3CB LMO2 TSPAN7 RPS2 PLEKHG3 NDUFA4 CDC14A ATP6V1A POLR2L CDH5 RPL26 SH3BGRL3 UQCR11 PRDX5 EPS15 FAM84B CLTC EPHX2 ST6GALNAC3 GNB1 PTRF SERINC1 C4ORF3 NDUFB2 RPL38 IFI27 VDAC3 NARS SIPA1 KLF10 YBX3 PODXL FOXC1 RPL31 STK39 TRMT112 TGM2 MT-ND4 IFITM3 BTNL9 EBF1 ACTB HLA-B TMX4 RNF144B RAMP1 GREM2 AP3S1 IFI44L MRVI1 PPDPF UQCRQ KLC1 CTDSP1 RND3 RP11-111M22.2 MTRNR2L6 IDS UQCRB ARF5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-ND2 MT-ND4 MT-CYB MT-ND3 MT-ATP6 ATP1A2 TMSB4X MT-CO1 MT-ND1 A2M RPS28 SLC6A1 SLC7A1 RPS15 SPOCK2 ARHGAP29 ACTG1 SPARCL1 B2M SLC38A5 CLDN5 RPL13A MTATP6P1 CLEC14A RPL13 IFI6 RPS4X MTRNR2L12 PODXL TMSB10 PVRL2 VIM RPL32 BST2 DLC1 TSC22D1 ETS2 TMEM123 RPL8 CTNNB1 ADIRF FLT1 POLR2L FTL ITM2A SPTBN1 YWHAZ IGFBP7 RNASE1 LMO2 LAMTOR2 TNFSF10 CLU RPL38 WASL RPL10A ZBTB20 HLA-B MYO1B SLCO2B1 LHFP EIF1 NOTCH3 ACTB COX5B CPE OR6D1P GABARAP DNAJC21 ATP9A MT-ND5 PRDX3 FJX1 FAM189A2 EPAS1 COL6A1 GNG5 CALCRL EIF4A2 TMEM204 TPI1 AIF1L RPL18A MORF4L2 GPR116 RPS2 POMP MTUS1 ATP1A1 VDAC1 ATP5I PSD3 HSPB1 PAM SEC61G PSMD8 TXNIP NFIA SERF2 SLC2A1 ETS1 CSPG4 PTN MRFAP1 MFSD2A DYNLL1 RAB3B SYTL2 NUDT21 ERG CLDND1 RGS5 RPL7 FAM84B MANBAL NUTF2 PDGFRB AURKAIP1 PLTP IFI16 RPL11 TM4SF1 SLC38A11 GABARAPL2 MECOM PREPL MAST3 AHNAK CALM2 SUMO1 PRKCH NDUFA4 SYPL1 SPARC ARL6IP1 BASP1 RAB6A ITM2C SLC38A3 APP FRZB WFS1 BSG PAFAH1B2 PEBP1 MRPS28 TIMP1 GNG11 SPOCK3 PJA2 GHITM TAGLN2 VAMP2 STMN2 RPL31 ASAP1 MDH2 GAPDH YWHAB PPDPF MTRNR2L8 PPP3R1 GDI1 RELN SCN3B GPX4 PSMC3 SV2B LMCD1 CCK UBE2F UTRN PINK1 IFI27 EMCN MIEN1 PTRF CLTC ARPC4 GRM3 CDH6 SARAF RPL37A SLC19A1 ATP10A SUB1 CBLN4 C10ORF10 CFL1 GIMAP4 AP2B1 ENG CD99 GUK1 STK24 BIRC5 FOXQ1 CCDC85B TANC1 GPX1 NBL1 SH3BGRL2 NDUFB2 ALDOC NDUFA13 NOS3 TMEM11 REEP5 COX4I1 PLP1 UQCRFS1 MT1F PSMB5 SSTR2 COX6C SLC7A5 RPL15 HIF3A FRMD4B PRKCB UBA1 AXL ENO1 ISCU EPB41L3 RRM2B TMEM179B EGFL7 DYNLRB1 ARHGAP42 ABCG2 HES1 ETFB LSR CCDC141 FAM111A CRIP2 EIF1AX TRMT112 WWTR1 MT2A FOXP2 PLAUR SEPW1 COX7A2L UQCRB SOX18 C1ORF56 TPT1 RPS6 PFN1 MTRNR2L1 AP2M1 EDF1 RNF152 SRP9 ATP5E BGN HIGD1B PCBP1 C19ORF43 NDRG3 VWF GLO1 TMCC3 TUBA1B TBX2 TMSB4XP4 GPCPD1 RELL1 ID1 PGD RHOB RPS10 YWHAQ RPS27A ATP6V1A PPP1R7 KLF2 NDUFS5 RASSF3 LBH DNAJA1 UBE2E3 C10ORF54 IFITM2 COX7A2 ITM2B NHP2 TUBB2A FAM84A MTPN ST6GALNAC1 NDUFAF2 ATP6V0C SLC25A6 OPA1 EFR3A PTMA UQCRQ PREX2 ZBTB18 CTSD RAB1A GSTT1 NDUFS6 PIP4K2A HEG1 PGK1 CA4 TTYH2 LGALS1 ATP5B IQSEC1 ELOVL7 COBLL1 B3GNT1 UBL5 PPIA MPP1 DISC1 CD24 ITPR2 TGOLN2 RBX1 DRAP1 TRIM47 LMO4 TRIB2 PET100 CTBP1 ZIC2 UBB NDRG2 NDUFB10 LAMA4 ATP5A1 IGF2 COX7A1 SMS GNAQ JUNB TUBA1A RP11-20I23.1 TOMM7 IL13RA1 PARP14 NR1I3 TBC1D15 FTH1 IDS ALDOA RPL41 IFITM1 RPL3 PCDHA9 PCDHA10 PCDHAC1 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ND4 SPOCK2 MT-ND3 MT-CYB MT-ND2 A2M PTGDS MTRNR2L1 SLC7A5 ICAM2 SPARCL1 SPTBN1 TMSB4X MT-CO3 ABCG2 ZIC2 ITM2A TLE4 ACTB ATP9A FLT1 RPL41 RPL39 RPS28 MORF4L2 IGFBP7 COX7A1 CCM2L PFDN1 GPM6A CD63 HLA-B SLC38A5 MBP EPAS1 ARF1 FAM127A LRRC32 RPL37A BEX1 CARNS1 TM4SF1 THY1 RAB13 MOBP VWF RPS3A LGALS1 RTN3 PKM RPL8 KLC1 CLDN5 COBLL1 IL4R EDNRA RAMP2 HBB TMEM51 NRN1 SERF2 GOLIM4 PON2 PLP1 RPL38 UTRN UHMK1 GPCPD1 RNASE1 MT-ND1 HSP90AA1 DNAJC21 TMEM123 GHITM CYB5R3 CLU FOXP2 NDUFA5 SLC7A1 MT2A PPFIBP2 MYL6 NPTN BASP1 SUMO3 CMAS YWHAB TMEM204 KIF25 ATP5E ENG CYYR1 SYNPO HSP90AB1 NAPB UQCRB OAZ1 MT-CO1 MAGEH1 SCN1B TMA7 TMEM35 CDH5 SARAF TPD52 BIRC5 CX3CL1 PTRF GPR37 SLC7A8 DCN ARHGAP29 VDAC3 CRIM1 TUBB2A RPL35 GABARAPL2 CALM2 FAM3C YWHAZ CLTC SLCO2B1 CPE MT1L TSPYL5 TGFBR2 NDUFS6 MRPL55 RPL3 VWA1 LMO2 APLP1 GPIHBP1 ZNF365 SLC6A1 SOX18 RPL26 DKK3 TIMP3 RPL31 PFDN4 MT-ATP6 ALDOA SLC38A3 ELAVL2 SLC24A2 BST2 HTRA1 UBC TMSB10 PTMA GPR4 PGK1 OSMR SLCO4A1 UBE2F RASSF3 ZMAT2 NARS PTPRS ABCB1 MT-ND5 SYNJ1 NDUFA11 NRGN SERINC1 RGS5 OXR1 ITM2C TAGLN2 CNP PODXL LAMA3 RPL6 GPR116 B2M MTRNR2L6 HBA2 HBA1 RNASEK-C17ORF49 ZNF385D SYTL2 RAB3B PLEKHD1 HNRNPA1P40 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-CO2 TMSB10 MT-ND3 ATP1A2 MT-CO3 MT-ND4 MT-CYB RPS28 BSG ELOVL7 RPL37A MT-CO1 RPL13A MT-ND2 PTGDS SLC7A1 RPS27A ENG FLT1 RAB3B ACTG1 TPI1 A2M ASAP2 SPARC LRRC32 GPX4 SPARCL1 PTMA MTRNR2L1 COX6A1 EPAS1 ZIC1 ARFGAP2 TPT1 CLDN5 ARHGAP29 COX17 C19ORF70 VWF ATP6V1A MT1F SLC6A1 HSPA2 HES1 SNAP25 TMA7 SLC39A10 S100A16 YAP1 TCEB1 HLA-B GNG5 PECAM1 DSTN CD63 SLC25A4 TAGLN2 CTNNB1 XAF1 SERF2 ETS1 CD59 SLC2A1 COL5A3 SUB1 EIF4A2 EIF1 GAPDH MTATP6P1 RTN1 TOMM7 STXBP1 NDUFA4L2 ATP6V0E2 SYPL1 IFITM2 PRRX1 MAP1B NDUFB4 NDUFB8 IFI6 AP3S1 SLC38A5 RARRES2 MTRNR2L12 LMO2 RPL13 AZIN1 GSTO1 CFL1 FOXC1 CDC37 FKBP8 PPIA SV2B ZNF547 ATP5H ATP5J ARF1 STC2 GNB1 RGS5 HTR1F IFITM3 RGS4 RNF181 ARHGAP6 GIMAP4 CRIM1 HSPE1 CLEC14A SPCS2 SLC7A5 EFR3A SDCBP RPL18A GPER1 COL6A1 TGOLN2 PNKD RPL41 MT1G UQCRC1 COBLL1 DCN SPTBN1 ATP1A1 RPL11 IQSEC1 PSAP DNAJA1 YAF2 SPOCK2 LBH RPL10A NFIA RPL17 ACTB HSP90AB1 APOD CTBP1 PAQR8 AURKAIP1 SYT1 APLP2 SLC40A1 TMSB4X ATP5I PRX GGT5 PALD1 RPS15 NDUFA2 ATP2A2 TGM2 TMEM179B C19ORF53 NDUFB2 PKM CDK17 FTL GUK1 QKI MT1X GGACT UBA52 CCDC25 SERINC3 PTN MT2A RPL23A PEA15 COX7B HIGD1B CD9 IFI27 CNTNAP3 RP11-111M22.2 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1A2 MT-CO3 MT-ND4 MT-ND3 APOD DCN MT-ND1 SLC1A3 RPS28 MT-CO1 MT-CO2 PTGDS COL1A2 HIGD1B RAB3B MT-ND2 PTN ABCA8 FBLN1 RPL32 TMSB4X PLTP SLC2A1 TGFBR2 TRMT112 RPS3A SLC6A12 PTMA BSG MT-ATP6 ATP10A VIM MFGE8 ITM2B COBLL1 CLDN5 HSP90AB1 GAPDH TPI1 A2M RPL37A LGALS1 TNS1 MTRNR2L1 CD63 IFITM3 IFI6 TMSB10 MT-CYB NBL1 HIC1 SPARC EPAS1 TMEM258 NR2F2 ARHGAP29 RELL1 FTH1 RPL39 CRIM1 RPS27A DLC1 BST2 NAPA SELENBP1 BCL6 LEF1 BANF1 MARCKS BTNL9 IL6R IFI16 ARPP19 PIK3R1 HSPBP1 SNX17 RTKN TSC22D1 DDR2 EDNRA KL AES UBQLN2 ZFP36L1 CAPZB ZNF574 PDGFRA HES1 COX7A2L ADM HDHD1 RAB4A METTL7A RPL41 ATP1B2 ENPP2 APLP2 PTGES3 PAM SERF2 SLC6A13 RHEB IGFBP2 NFIA COL6A2 IFI44L PLCB1 SSBP3 CYB5R3 LBH ABCB4 ATP6V1G1 ISG15 RAB34 COL12A1 LDHB BOC SOX18 CALM2 GPX4 ITPR2 SLC25A6 CA4 CYP1B1 ATP5O RGS4 C16ORF13 DSTN NEK7 RNF11 ACTG1 SLC25A22 PRKACB GPCPD1 ABCG2 VEGFA SLC9A1 CORO2B MYL6 SNX3 DUSP1 BHLHE40 SPOCK2 TCEB2 SOD1 PLAC9 RPS4X HINT1 TMEM164 MTUS1 PREPL ITGB5 LSR NCDN RAB11A GGT5 FOXC1 GRM8 SLC38A5 TRPV2 ZNF385A NREP PELI2 NDUFA4L2 ITM2C TOMM20 ERH RND3 NRIP3 RNF208 GSTO1 SYT11 NOTCH3 RBX1 HEG1 PPP2R4 RPS19BP1 RNASE1 CHP1 TM4SF1 TIMP3 POU3F1 CPE SLC7A5 CDH5 NFE2L1 PSAP ATP5F1 RP11-195F19.5 ADAM33 TXN NDRG4 MSMO1 LRRC32 MRPL47 SLC6A1 UBC MRPS7 RPL10A ZIC1 IGFBP7 CRIP2 SPARCL1 PLSCR1 MT1E ALDOC SSPN CCND1 FKBP4 ACTB ARHGDIA IGFBP6 RAB3C TRPC3 B3GNT1 NGFRAP1 NDUFA4 GMPR TRIL TCEB1 MT2A GNG11 SARAF ENOPH1 RPL31 TF RPS10 RNASEK-C17ORF49 TUBB PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 MT-CO3 MT-CO1 MT-ND4 RPL13A MT-ND3 NDUFB3 PSAP TMSB4X MT-ATP6 RPL26 MT-CO2 VWF RPS27A SDPR MT-CYB NDUFA13 MT-ND1 SPOCK2 IGFBP7 ACTG1 RPS10 NDUFA1 RPS3A RPS28 PTMA BSG MTUS1 ITM2A RPL35 RPS12 ID1 MAP4 RPL39 ATP1A2 RPL32 SRGN RPS6 ITM2C ALDH1A1 RAB2A RPL31 TM4SF1 FTH1 CD63 CYSLTR2 RAB11A PRTG MAPRE3 NOTCH3 CTSD UCHL1 KLHL5 CTNNB1 MYL6 CCL27 BTNL9 MT1M PTN ZFP36L1 SYNJ1 SAMM50 CHGB TSPYL1 GNAQ B2M FLT1 EFCC1 RPL37A ATP5F1 POMP UBL5 IL13RA1 VPS35 ITM2B NDUFA4 PIN1 ETFB HIF3A CLDN5 GUK1 NDUFA2 GADD45GIP1 NDUFS5 TPT1 RNF11 PRKAR1B SERINC3 ARHGAP35 ACSL5 MRAS RPL6 DNM3 CHN1 A2M GPCPD1 RABAC1 PHB TBCB DYNLRB1 GGT5 DKK3 IFI44L PSD3 ATP5J PECAM1 PPP2CA RAB3B RPL15 HSPB1 NDRG2 MT-ND5 GNG11 YBX3 C12ORF57 ZBTB20 PSMA7 TNFRSF11B MT-ND4L SLC25A6 WNT4 MT1E BCKDK TMA7 SCAND1 RASGRF2 SLC17A7 CALM3 SLCO2B1 ATP5E ACTB PPP2CB NDUFA5 SEMA5A CORO1B MTRNR2L1 C6ORF1 PHLDB2 SLC7A5 SERINC1 ATP6AP2 GMPR GMFB RPL8 CYP1B1 RGS5 MRPL20 EPAS1 DACH1 MT2A TMEM88 SAP18 ASAP1 PTGDS C1S CPE TSC22D1 CD99L2 TIMP3 PPDPF SLC7A1 SYTL2 APLP2 EFEMP1 TCEB2 MTCH1 S100A6 UBA1 DDR2 FAM43A MFSD2A S1PR1 GOLIM4 ARFGAP2 RPL17-C18ORF32 RPL41 MTRNR2L6 ATP1A3 BSCL2 NR1I3 IFI27 C18ORF32 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND3 B2M MT-CO3 MT-ND4 MT-ATP6 MT-ND2 RPS28 MT2A MT-ND1 MT-CO2 RPL13 MT-CYB GRP BSG MTRNR2L1 PTN RPL6 CD63 PECAM1 NOTCH3 TIMP3 SKP1 LGALS1 VWF CCT5 LZTS1 TMSB4X ACTG1 FTL PODXL ATP5I RASSF8 IFITM3 RP11-357G3.2 SNCG DNAJC4 MFSD2A ATP1A2 ISG15 MRVI1 MTUS1 LAMTOR1 ATP2B4 ZIC2 RPS6 TMA7 GAP43 PARP9 SLC25A6 AVPR1A SYT11 ATP2A2 ARPP19 MZT2B UBL5 RGS4 PRDX1 FXYD6 TGM2 EGFL7 IGF2 SPOCK2 MED10 DNAJB6 IGFBP7 GPX4 SLC7A5 CLTB GUCY1A3 A2M PTGDS RPL36A TTYH2 DPY30 RASGRF2 CRIP2 OST4 KLC1 CD59 NDRG2 EPAS1 RAB11A IFI27 HSPB1 TSC22D1 CALM1 MYL6 SLC2A1 RP11-20I23.1 C12ORF57 PSMD12 COX7A2 SLC25A5 STMN3 EIF1 FKBP7 C6ORF1 CPNE8 NTN4 KLHL5 ZMAT2 VGF PEA15 SNAP25 RAN SERPINI1 UQCR11 HLA-B ATP1A3 ZIC4 SLC6A13 WLS PPA1 ATP6V0C CD99L2 CLIP3 CHP1 COX6A1 CSPG4 TUBA1A CHN1 COX7C SEPW1 TMEM123 VAMP2 TNS1 PREPL ARL6IP5 RABAC1 MAPK8IP2 PRNP SRGN RPL15 ATP5F1 GSTO1 LMO2 NDUFB4 ABCG2 SYPL1 RPL38 C19ORF70 CLDN5 NDFIP1 SARAF PITHD1 C1ORF52 SLC6A1 CALM2 COL5A2 ITM2A NAA38 GRM3 PRDX3 MYCT1 SYT1 SERF2 NDUFS6 UBC MORF4L1 SELENBP1 CCDC141 ZFP36L2 CHL1 APP APOD SPARCL1 SCG2 RP11-632C17__A.1 PLD3 MTRNR2L8 DYNLL1 STOM MTATP6P1 RPS26 GPM6A TMSB10 RPL26 ATP6V1A THOC7 FTH1 KCNC3 KANK3 ARHGAP29 PSMB7 IDS NR1I3 ALDOA PTMA TF MIF DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MTRNR2L12 MT-ND4 MT-ND2 TMSB10 XAF1 MT-ND3 COX6C ATP5I SERF2 LGALS1 NDUFA4L2 CYFIP2 RPS27A MT-ND1 TMSB4X MT-CYB MT-ATP6 ATP1A2 MT-ND4L GGT5 SPARCL1 RPS15 EDF1 RPS26 MTRNR2L1 RPS6 PTGDS SLC7A5 PTMA ATOX1 SPARC NFIA MDH1 RPS3A HIGD1B ZIC1 IFI44L HSPE1 GPR116 LPAR6 ACTB GNG11 ENO2 EPAS1 AGT MT2A PCDHGA5 IFITM2 RPL11 FRZB TF TMA7 RPL3 CHN1 CLTC SYNJ1 YWHAZ S100A13 OCIAD1 PGK1 MFSD2A RPS4X RPS12 ALPL TIMP3 MT1F SEPW1 DPYSL2 TUBB4A BTBD11 RPL12 PRKACB MT-ND5 TUBD1 CD59 TANC1 VWA1 TXN PNMA1 MYL6 COX4I1 CSDE1 LBH CALM1 TPT1 PPA1 HNRNPH2 SRGN GUK1 ZFP36L1 DCTN1 MIR6723 PHPT1 P2RY14 TMEM88 LSR RPS10 ANXA6 GEM YBX3 ETFB TMSB4XP4 PARP14 RPL23A SLC17A7 HOMER1 MARCKS MAP2K2 LCN1 DSTN COX5B ACTG1 PRDX1 PNKP CALM2 ANXA7 METTL7A NDUFA1 MLF2 VAMP5 UBL5 NDUFB2 ARPC4 TLE4 AURKAIP1 B2M MFN2 ERBB3 RPS28 RHOB CCK CLIC5 ZNF503 POLR2I TMEM51 HLA-B SLC7A1 QDPR ADAM33 NDUFA2 UQCR11 UQCRC2 MGST3 PLSCR1 CPNE2 ITM2B TNS1 BSG EMCN ADORA2B C7ORF50 ATP5E RPL21 COL5A3 DUSP6 TM4SF18 YWHAH PPP2CB RAB3B MRPL12 MYEOV2 CPE FAM127A RPL41 FOXQ1 SOD1 EBF1 RGS5 GNB1 GPM6A MTRNR2L8 SEPP1 RPL31 NUDT4 RPL17 YAF2 RGCC MT1M SLC25A6 PPDPF PREX2 TMEM59L SLC6A1 NDUFB4 COL6A1 SPOCK2 FTH1 NBL1 PINK1 PPIA OST4 RAMP2 ARHGAP35 CLIC4 SYT11 KANK3 NDN SUMO1 OPA1 ANXA4 ANAPC11 TMTC1 CHCHD2 WASL VWF LMCD1 ETS2 GPCPD1 DCN UBA1 NDUFA13 SELM NDUFB10 VWA2 BLOC1S1 ARPC5L DLC1 MIF OR6D1P NSF IFITM1 RNASEK-C17ORF49 MTRNR2L6 ATP5O IDS RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MTRNR2L1 HSP90AA1 MT-CO3 MT-CO1 ACTB B2M EBF1 RPS28 CALM2 ITM2B SERF2 PRKAR1A FOS BSG MFSD2A EVA1B ACACB FTL RPL13 ETV1 MAF MTRNR2L6 TMSB4X SLC6A1 GPR116 KLF2 CLDN5 IGFBP7 FLT1 SRGN CYP1B1 SLC2A1 PDGFRB TPD52 MS4A7 HBA2 RGS5 HSPE1 SOX18 EIF4A2 C1D YBX3 FOXC1 MT2A MYL12B CRIM1 NFIA DCN DUSP1 NR2F2 OAZ1 RAB13 MT-ND4L ATP5B CLEC14A ENO1 RPS5 HPRT1 BGN ATP10A RAP2A RPL37A NR4A2 ATP2A2 HDAC1 GABARAPL1 TSPYL1 RPS2 NHP2L1 PDCD5 BAALC IL13RA1 CLDND1 SCN3B DNAH11 CTBP1 CTSD CCDC25 ATP6V1G1 MYO1B ARF3 ENG CYB5R3 UBE2E3 SRP9 MT-CYB PRDM1 ACLY S100A6 ADIRF CSPG4 TIMP3 PODXL MTRNR2L8 PTK2B SLCO1C1 TMA7 PLD3 TXNDC17 DNAJB6 ITM2A CLU LCP2 EIF1B EXTL2 ATP5I OPCML ADAMTS1 MORF4L1 ATP2B2 ADAM33 ITM2C TMX4 PDK4 PITPNA ZBTB20 FOXQ1 EGR1 TUBA1B CDK5R2 CCM2L MTUS1 COX17 VIM HIGD1B SLC7A1 GHITM WLS PTRF PTN ZNF503 SLC1A3 ATP1A1 TOLLIP TPT1 RPL6 ENSA ETS2 RELN SLC7A5 F3 NR4A1 LANCL1 MTRNR2L12 ATP5E NEUROD6 EDF1 SIPA1 MZT2B LMO2 FRMD4B EGFL7 POLR2L FAM3C GUK1 RASGRF2 PRDX5 TBX2 CDK17 RP11-175B9.2 OLFML2A TMSB10 COL6A2 VAMP2 MT-ND2 ARHGAP29 SYT17 UBC IGF2 LAMA3 COX6A1 MT-ND3 LCAT RNA5-8SP6 YWHAB STOM SLC38A11 COBLL1 EMP1 LPPR4 GRIP2 APLP1 CKS2 RAMP2 CCND1 FAM43A DPYSL2 GYG1 POLR2I FARSA SLC19A1 ELOVL7 DKK3 FTH1 EDNRA TMEM150C PREX2 KITLG ISCA1 RNF152 TNFSF10 NDUFA2 SLC6A12 VAMP5 MAP2K2 RPL11 SLC26A10 GABARAP CFH IFI27 RNASEK-C17ORF49 DNAJC21 TBC1D15 RPL13A RP11-219A15.1 HNRNPA1P40 PLEKHD1 RAB3B ZNF385D SYTL2 ESCO2 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB10 TMSB4X ACTB CLDN5 MT-CO2 MTRNR2L1 MT-ND3 RPS28 FLT1 MT-CO3 NOTCH3 MT2A RPL35 SLC2A1 VWF FOS RPL3 RPL21 RPS26 IFITM3 IFITM1 DUSP1 B2M UBC JUN EIF1 RGS5 CALM2 BSG CFL1 GPCPD1 SLC7A5 SLC38A5 NBL1 MLF2 RPL13 MTRNR2L6 PTMA CASP7 COX4I2 GAPDH SLC39A10 ATP1A2 PGK1 PJA2 SEPW1 MT-CYB CYB5R3 SUMO3 IFI27 MT1M MT-CO1 ATP6AP1 TBC1D15 SYTL2 CALM1 ISG15 FTH1 PARP14 PRX RPL8 NHP2L1 IGFBP7 COX7C RPS10 EPAS1 IFITM2 IMMP1L KLHL5 ID1 RPL23A CD63 RABAC1 HSP90AB1 RPL41 ACTG1 PVRL2 HIGD1B MT-ND1 PPP1R14A MT-ND4 NGFRAP1 MT-ND2 LRRC32 TTN S100A13 RAB3IP SRP14 ZFP36L1 CRIP2 SPTBN1 ABCG2 PPDPF TUBA1B KLF2 ZBTB20 SLC7A1 RARRES3 TIMP3 CD99L2 RTN4 SOD1 PTRF SLC6A1 TMEM51 LMCD1 MAP4 SLC6A13 HIC1 RNF181 GPER1 ATP5E DLC1 SOX18 ITM2A TPT1 PRDM1 UBB IFI6 TMEM123 DNAJC21 RAB3B HNRNPA1P40 TGFBR2 SLC19A1 MT-ATP6 RAMP2 MRPS21 MFSD6 NDUFA1 LBH VEGFA P2RY14 STOM AES TMA7 PSAP PLD3 HEG1 ENPP2 ATP1B2 SLC1A3 PAFAH1B2 PELI3 CALCRL STMN4 DCTN1 PPIA CLEC14A GPR133 PEBP1 GPR116 PTN ANXA4 CD59 NDUFAF3 CNTN1 RELL1 RAB11FIP5 RNF152 RPL18A DCDC1 LCN1 RAB11A VSNL1 PRRX1 COX5A PLSCR1 ETV1 C7ORF50 ISCA1 PGRMC1 NAP1L2 CD9 COX4I1 VAMP2 AP2B1 GHITM LMO2 HBA2 RP11-111M22.2 PREX2 ATP6V0B GADD45GIP1 LDHB RASSF8 NDUFB1 LGALS1 POMP PLEKHG3 PDE9A PRNP TSC22D1 NDUFA12 CTGF NDUFB2 ARHGAP42 APBB1 TCN2 GRM3 CHMP5 PRTG KANK3 C10ORF54 PLTP ARL6IP5 ENG GPX4 FSCN1 LMO3 EXTL2 C10ORF10 FAM134A DYNLT3 NUDT13 MAF MFSD2A CAPZA2 CPED1 GATA2 COX6C TRPC3 EGFL7 TGOLN2 TXNIP PSMA7 LAMA4 DCN PHPT1 IFI44L FLOT2 HEBP2 COX6B1 RHOA SALL1 SIPA1 S100A16 PHF11 FKBP1A CST3 UQCRHL PRKAR1A ARPC4 GGT5 ADIRF VAMP5 HINT1 MTRNR2L12 IL3RA S100A10 IL4R OPA1 C16ORF13 UROD PSMB5 ZIC2 NDUFA4 SHE NFIA COBLL1 GNB1 RNASE1 NAA38 SERINC1 NDN RANBP3L COX8A EIF4A2 CRIM1 ALDOC ELMO1 FAM3C ATP5I GRINA RILPL2 CTSD MECOM STK24 TM2D3 LSR ATRN RPL32 PPAP2B DNM3 ANAPC11 TRAPPC1 TCEB2 HSPB1 POLR2L CDS1 RPS15 MFGE8 CCDC85B C14ORF132 RPS12 MBP SERF2 RNASEK-C17ORF49 COX6A1 WDR47 VWA1 CCDC124 CLDND2 MYO10 RGCC BST2 NOP10 YWHAZ SEMA3G LAMA2 UBE2L6 RHOC EFHD2 GNG11 FTL FRMD4B PTGDS CA4 ATP6V1C1 TMOD2 ZFP36 RPL37A MT1E TMEM150C MYL6 SEMA4G RPL6 ISCU PHLDB2 TPRG1L SPCS2 SPARC ATP6V1G1 CKS2 NDRG2 GNG12 RPL38 COMMD6 CDH13 SOCS3 MED10 TGM2 ARL8A MGST3 TPD52 PRELID1 RPS4X CDC37 PRKD2 MT-ND5 ETS2 SYPL1 SERINC3 MRPL55 TPGS2 OAZ1 TGFB1I1 TRIB2 DAB2 KIFAP3 HNRNPH2 NCOA4 LCP2 CFI HLA-B TUBB3 GABARAP CFH C11ORF31 MIF PCDHAC1 PCDHA4 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ADIRF RPL41 MT-CYB NOTCH3 HSP90AA1 EGFL7 MTRNR2L12 MTRNR2L8 PDGFRB MT-ND2 JUND PRKAR1A CALM2 SERINC1 SDPR PALD1 SPOCK2 HIGD1B RPL37A SLC6A1 SLC38A5 MT-ND4 KLF2 CPE SLC6A12 RGS5 MTRNR2L1 FLT1 MTUS1 ABCG2 RP11-111M22.2 SLC2A1 MT-ND3 DUSP1 PODXL BSG TXNIP RLIM MT-CO1 MT-ATP6 ACTB PPTC7 TSC22D1 MAFB MTND2P28 LPPR4 GABARAPL2 MZT2B HINT1 SIPA1 SEMA3B CAV1 TGOLN2 ZFP36L1 EID1 MTATP6P1 ZNF703 CLMN ZBTB20 POMP FAT1 PTMA ZFAND5 FTH1 APOLD1 RHOB ELTD1 SYTL2 SNAP25 CYCS TBCB MTPN RPL13 EDNRB A2M COPS8 MYCT1 ENG CLTA FOXQ1 CISD1 SEMA5A UBA52 YWHAH ASAP2 ARPP19 ATP5B SERPINE2 CLDN5 PRPS1 PDE3A MT-CO3 RPL8 MAF NOTCH1 MT-CO2 PROM1 GPR116 SNAP91 ETS2 SSBP3 TOMM7 COX7B TMTC1 CD63 WFS1 SOX18 HNRNPH2 NTN4 LHFP TUBD1 KANK3 CTSD TMSB4X LDHB NBL1 LMO4 ID1 SLC19A1 MT2A RTKN PSMD8 GLUL PEA15 RPS19BP1 SEMA3G VSNL1 STUB1 HSPB1 P2RY14 SARAF RNF208 TRMT112 FOS AP1S1 GUCY1B3 IL13RA1 SPARCL1 BTNL9 TLE4 IFI35 SLC6A13 ATP6V1A RPL26 HIC1 S1PR1 NDUFS6 CDC14A ATP10A SLC39A10 ACACB SRGN LLGL2 MT-ND1 TUBA1B ATPAF1 ACTL6A RELL1 PRKCH ATP5G1 GPR133 SPCS2 ARL6IP1 UBA1 CCDC124 EDN1 KLC1 RPL3 KCTD12 RPS15 MIF RP11-219A15.1 RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLDN5 TMSB10 SLC7A1 MT-CO1 TMSB4X MT-ND4 DUSP1 BSG MT-ATP6 MT-CO2 MTRNR2L1 RGS5 SLC2A1 HES1 MT-CO3 TSC22D1 HIGD1B ID1 PTMA EPAS1 EGFL7 UQCR11 A2M COX4I1 MT2A SPOCK2 ADIRF RPS28 FLT1 CALM1 IGFBP7 MT-ND3 MT-CYB FOXQ1 UBC NR4A1 SLC6A1 ABCB1 SLC38A5 ITM2A RPL13A VAMP5 KLF2 TIMP3 FOS ZBTB20 SPARCL1 IL13RA1 RPS10 JUNB MTRNR2L12 UBB RPL31 NFIA COBLL1 RPL13 MT-ND1 PKM CFL1 KLHL5 COX5B ACTB UBA52 HEG1 FTH1 FBXO8 SRGN SLC6A12 RPL3 PSMD8 MFSD2A RPS27A DLC1 KLF4 PODXL CD63 GAPDH TMA7 SPTBN1 HNRNPA1P40 RPL35 CAV1 SERF2 MECOM PIK3R1 SKP1 COX7C PSMC3 TSPAN4 AIF1L COX6B1 RPL37A TMEM123 CCDC85B IFITM3 ZNF503 ATP5B SLCO2B1 GPCPD1 GPER1 PINK1 IFITM2 PLEKHF1 LSR PMEPA1 RPL36A TXNIP IL6R ATP10A ZFP36L1 IFI6 OAZ1 EIF1 CPE MYLK2 CALM2 TCN2 GPR116 CLTC MTATP6P1 ZFP36 MYL6 RHOC CNTNAP3 APLP2 FTL CRIP2 SLC38A3 PPP1CB EMCN PRKCH UBA1 MTUS1 ST6GALNAC1 HLA-B ATP5I OLFML2A EIF1AX COX7A2 COX17 ITGB5 GNAQ GPX1 YAP1 RABAC1 RPS26 SLC19A3 UBL5 HSP90AA1 HSPA8 EDN1 MTRNR2L6 LEF1 MT-ND2 ELTD1 ALPL APOLD1 TOLLIP SLC7A5 CTSD ACTG1 ITM2B NDUFB3 USMG5 HSP90AB1 ABCG2 COX7B PROM1 BLOC1S1 RHOB IFI27 FKBP1A PDGFRB TM4SF1 CYB5R3 ARF1 RPL17 C18ORF32 RPL21 ATOH8 DYNLT3 MRPL37 NACC2 SERINC3 CDK17 DYNLL1 PTGDS PTPRT BHLHE40 RAB5C KIF5A PPDPF TRIB2 CHMP5 NRN1 TAGLN3 TUBB4B CADM3 DYNLL2 COX6A1 STXBP1 ARHGDIA RAN KLC1 RAB31 C6ORF1 LRRC32 ZFP36L2 PRNP NOTCH3 BST2 RNASE1 SULF1 CNTN1 RSL24D1 HSPB1 CYYR1 MACROD1 RPL39 CADPS2 PRDX3 CLIC4 SH3BGRL3 ST6GALNAC3 MAPKAPK2 TNFSF10 MGST3 CARD16 DCLK1 RPS12 SLC22A3 SMIM12 GNB1 RTN3 RPL10A CYSLTR2 GLUL C11ORF31 SAP18 BRK1 MRPL33 SOD1 TMOD2 LINC00116 NDUFB1 MRPL52 DCTN3 ATP1A2 ATP5J SEMA3G FGF12 TUSC2 ID2 SEMA5A NDUFB4 C1ORF52 CDH5 DDR2 ROBO3 CCDC68 ACTR1A RPS15 KRTCAP3 RPS6 RPL8 SEC61G TALDO1 BTNL9 PRKAR1A CTNNB1 MAP1LC3B SAMM50 MT1E FAM107B MZT2B THOC7 LYN PPP1R14A MT1M CCDC141 PCBP1 CLMN SOX18 NDUFB7 NOTCH1 ISG15 PREX2 LAMA3 FAM3C OSMR TBR1 MYO1B ATP6AP1 ATP1A3 SARAF ENSA SPARC HIC1 CDKN2AIPNL ATP5E DLD SLC39A10 CASP7 EBF1 PIN1 ENO2 ALKBH7 TPT1 DNAJA1 TRAPPC1 RPL23A AES CHI3L1 MMP24-AS1 EPS8 SRP14 RPL15 ZMAT2 RFX8 SGK223 GPR37L1 SNCG CCM2L CST3 TIMP1 C19ORF53 ARHGAP29 ANXA3 MAP4 ENG CSDE1 MAPK1 UTRN S100A6 ZIC1 SYT11 RPS4X GUCY1A3 PEA15 SNX10 MAGED2 CA2 HOMER1 MLF2 IFITM1 RPL26 EDNRB ITGA6 GOT1 GNG11 PRX NDUFA4 CA4 JUND CORO1B CRIM1 FAM69C TTYH2 RPL41 VWF TOPORS-AS1 EDF1 REEP5 MYEOV2 TM2D3 C9ORF16 C10ORF10 PHLDB2 IFI44L FOXC1 TSPAN7 CLU FIS1 YBX3 SIGIRR FAM89A UQCRB CDC14A NDUFA4L2 VDAC2 PTN WWTR1 FAM127A LPAR6 SLC25A6 PTRF SYN1 ISCU IFI35 ANK1 CTDSP1 NR4A2 CKLF TAGLN2 AHNAK DACH1 XAF1 LAMA2 AP2B1 PFN1 EIF4G2 CAPZA2 NDUFA2 TPD52 MAP1B UQCRH CDCA8 TSC22D4 ELOVL7 OXR1 PPIA RPL11 NEK7 ITM2C CHN1 AP2M1 PARP14 SCN1B GRP DYNLRB1 BAG4 C12ORF57 TANC1 EDNRA CCND1 RP11-195F19.5 EGR1 SPCS2 LATS2 POMP FBXL15 GADD45B MTPN ALDOA NGRN CD59 MIF RPS3A RPL17-C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MTRNR2L12 MTRNR2L6 MT-ND3 MTRNR2L8 FOS DUSP1 RNF11 RPS15 NR4A1 MT-CO1 TSC22D1 TBX18 MT-ATP6 MT-CYB ZBTB20 MT-CO2 TIMP3 HSP90AB1 TMSB4X MT-ND2 GPR4 KLF2 SLC6A1 MTATP6P1 PDGFRB CRISPLD2 TBX2 SERINC3 TUBA1B CPE FBLN2 PTN APP MT-CO3 TMSB10 RPL32 RPL3 MT-ND4 B2M MT-ND1 UBC C1S EIF1AX KLF4 BCAP31 RAB3B NR1I3 FOXC1 GABARAPL1 ZNF319 PLSCR1 TXN GEM WASF1 SPARCL1 TMTC1 AHNAK RBM20 KIAA1755 CRIM1 COMMD6 LAMA4 VSNL1 ARL4D HBA1 DYNLL1 PTGDS ABCB1 GHITM MFSD6 ZFP36 EGR1 RPS12 A2M POLD1 RLIM FAM43A ACTR6 CEND1 HLA-B SHC4 CTNNB1 RTN1 RPL7 MT1E MAP4 TSPYL5 SOX4 JUNB APOD USMG5 PPP2R1A RAB34 GOLIM4 HEY1 YWHAQ SPTBN1 COL6A1 CASP4 NDRG2 ADAM33 NR4A2 LGALS1 GPR116 PGM2L1 NDFIP1 SIRPA ELTD1 MAP1B ARHGAP29 ARFGAP2 TXNIP SERF2 ATP5I RPH3A SLC38A11 CDH5 CLU MT2A HSPA2 COL12A1 SEPW1 PLAC9 ETFB GTF2B STAB1 GAP43 GPNMB EMP1 CLPTM1 GPR133 IFITM3 FOXQ1 EIF1B HSPB1 PDLIM5 ABCA8 CYBRD1 AEBP1 HES1 GAD2 C10ORF10 CTGF NDUFS6 PEA15 TIMP2 UBA52 SLC40A1 TPT1 S100A6 CAPZB PREPL SYN2 LRRC32 EPAS1 GPM6A DCN EGFL7 ATP6V1B2 NDFIP2 TOMM7 VAMP2 MTG1 TSPYL1 NUDT21 UQCRQ RPL13A NDUFA4 GPX3 EPS8 CCND1 PLD3 ARHGDIA COX14 SCAND1 NID1 RPL35 JUND S100A10 ARF5 IDS PLEKHD1 HNRNPA1P40 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 TMSB4X CLDN5 RPS28 B2M BSG CX3CL1 MTRNR2L1 ACTB SERF2 CTGF GPCPD1 ITM2A SPARC PODXL MT-CO3 DUSP1 SLC7A5 EPAS1 ID1 PTRF SPARCL1 SLC6A12 RPL37A ITM2B RPS15 HSP90AA1 ALPL RPL41 KLF2 SYPL1 SLC2A1 A2M MT-CO2 SLC19A3 MFSD2A RPS3A GLUL IFI27 TAGLN2 ABCG2 POLR2L LPPR4 EDN1 CTNNB1 CDH5 PTMA TM4SF18 FTH1 PET100 EGFL7 YWHAZ MT1F CD59 MT-ND4 ICAM2 MTPN MT-CYB ANXA1 BST2 UTRN RELL1 EIF4G2 NAA38 TPGS2 MT-ATP6 RPL13 HIGD1B PTGES3 EBF1 COX7A1 SEPP1 RGS5 ZBTB18 TCN2 FLT1 TSC22D1 MYL6 SPOCK2 VIM COX6C RPL31 SLC39A10 LHFP ATP5E RAB11A NFIA OAZ1 ATP1A2 ST6GALNAC1 QKI UBB SIPA1 C10ORF10 MT-CO1 JUN EIF1 AHNAK MT-ND3 SHE RPL13A NDUFB1 HSPE1 MTRNR2L6 RPL15 VWF CYB5R3 RPL32 ETS1 ZNF503 TMEM204 NDUFA13 CREG2 UQCR11 SEPW1 VPS35 NDUFB8 EMP1 GPR116 TXNIP ACTG1 APOLD1 TNFSF10 SPTBN1 GSTP1 HDLBP SLC19A1 SLC17A7 DNAJA1 PALD1 SERINC1 APLP2 PRDX1 NDUFC1 C4ORF3 CAPZB GHITM DMKN TMEM179B IFITM2 SLC24A2 C10ORF54 LPAR6 MRPL55 RHOB RBPMS2 NDUFA4 YWHAH AXL COBLL1 HES1 HOPX S1PR1 POLR2J ANGPTL4 LEF1 TIMP3 IL13RA1 FOXQ1 SH3GL2 CALM2 SLCO2A1 VDAC1 UBA52 MPO FAM229A STOM FTL HLA-B TLE4 PSENEN MIF DPYSL2 GPR56 TMEM11 SCD SMIM3 NDFIP2 EPS8 UBE2L6 ANAPC13 RPL36A PSMD2 CAMK2G YAP1 GABARAPL2 NEK7 TUBB6 PKM SNRPN TCEB1 PRUNE2 RPS27A TGFBR2 KLF4 TM4SF1 COX7C LGALS1 MFGE8 TPT1 FBLN2 ACP1 YWHAB CSDE1 ATP6V1E1 NDUFA4L2 C19ORF70 LAMA4 PVRL2 TUBB4B RPS5 ANAPC11 LAMTOR1 EIF1AX SAMM50 S100A10 PPP3CB PSAP RBM20 ARPC4 COX17 ATP5J RNF144B NECAB1 NAP1L2 NOP10 S100A13 SDPR PEA15 NDUFA1 SNCA EPHA6 PPDPF MTUS1 TMEM147 MARCKS GABARAPL1 HMGCS1 CFL2 JUND RPS6 PAFAH1B2 SDCBP ANXA6 ITGA6 ETFB MTATP6P1 TMA7 PSMD8 RTN4R GNAQ C1D PIP4K2A ITGB5 ESYT1 EVA1B LHX6 ZBTB20 HEG1 LSR GNG5 FOS SCAMP5 PAM FOXC1 ISOC1 MT1E ATP6AP1 CDR2L JUNB PPA1 SOD1 ISCU NR4A1 TUBA1A ATP5J2 EIF1B PECAM1 YBX3 ZFP36L1 SPATA13 EFR3A WASL MTRNR2L12 POMP PMP2 SLC38A5 MORF4L1 OLFML2A PRKAR1A ECM1 CPE RPL8 TSPO TPRG1L RAP2C MT1L SYNPO SSTR2 GPER1 RHOJ CHN1 PRKCDBP SNCG CALCRL FAM89A CAB39 ABCB1 RPH3A SH3BGRL3 CACNG3 TRMT112 NBL1 PELI2 HSPB1 CCT5 MAP2K2 IFITM3 CCDC141 CCDC61 VEGFA UBC PINK1 WLS COX14 PSMB7 CDC37 ISG15 SYTL2 ZNF385D RAB3B HNRNPA1P40 ARF5 NUDT21 IFITM1 SNAP25 NGRN RPL21 TUBD1 CAPZA2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB10 MTRNR2L1 PTMA TMSB4X IFI44L BSG UBC NOTCH3 MTRNR2L6 CD59 IFITM3 MT-ATP6 ABCB1 MT-CO2 ADIRF TSC22D1 RPL41 MFSD2A SLC2A1 B2M RPL15 HSP90AA1 RPS6 SPARC TOMM20 ISG15 AHNAK EPAS1 VIM MT-CO3 POMP ACTB ZFP36L1 NFIA CLDN5 ODF3B ITM2A COPG1 SARAF STXBP1 RGS5 RAN RPS28 PODXL DISC1 GAPDH CLIC4 IFI6 STOM PARP14 IFI27 EIF1 MRVI1 GSK3A NDUFS6 FLT1 JUND KLF2 DPYSL2 ATRN IFITM2 HOPX PCBP1 CLEC14A GNB1 ATP5E CALM1 CDK5R1 RARRES3 TXN SLC7A1 A2M GLO1 DUSP6 RAB3A UQCRH HIGD1B EFHD2 LAMA4 CPE SLC19A1 SDPR HSPA8 ABCA8 JUNB ZBTB20 ICAM2 TERF2IP PPP2R4 TGM2 LMO2 MTRNR2L12 CFL1 MT-CO1 GSTP1 RPL17P50 ADAM33 MT-ND2 TUBA1A COBLL1 RPL32 MT2A GADD45GIP1 MAGED2 FAM96B TAGLN2 SIGIRR S100A10 RPS5 SLC35B1 GUK1 SLC25A6 PPDPF PRKCE COX4I1 NDUFB11 TM4SF18 MTATP6P1 KIAA1755 PLOD2 NEK7 CCDC68 PDGFRB PTGES3 RTN1 ITM2B NDUFC2 OCIAD1 STK24 CPNE2 RTN4 CADPS2 MT-ND3 OXR1 MTPN EIF4A2 ATP11C SNRPE PPP3CA PPP2CB GUCY1A3 C1ORF56 TMOD2 EIF1AX PEBP1 MTND2P28 PRKACB RPL3 MRPL33 INPP5F TOMM7 B3GNT1 SIRPA RAB1A ID1 CDH5 PRKAR1A MYEOV2 NUAK1 SPATA13 NOP10 SLC9A1 SOCS3 MED10 TNFSF10 DYNLL2 TUBA1B COL5A3 NACC2 DCTN1 GPM6A EGR1 TSHZ2 PEG10 FRMD4B CST3 ITGA6 SERINC3 EVA1B C1D RPL35 RNF182 ABCG2 SPTBN1 APP FKBP1A ARF1 TTN KLC1 GNAQ REEP5 MAP1B SERINC1 SRP14 RPS27A FTH1 RHOB IL4R AES LINGO1 FAM111A ZNF385D SYTL2 RAB3B GABARAP MAP1LC3B IDS HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "endothelial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTL RPL13A RPL37A TMSB4X SPP1 RPL31 RPS27A RPL41 RPL23A RPL36A RPL35 TMSB10 RPS28 TUBA1B FTH1 RPS12 RPL11 RPS10 UBA52 PTMA RPL32 RPL3 RPL8 RPL26 RPS26 ATP5E GPX1 RPL6 RPL21 ACTB RPL7 GTF3A RPS15 RPS6 ARL6IP1 RPS5 COTL1 C3 RPL15 OAZ1 RPL12 MT-CO1 GLUL MT-CO3 COX6C TOMM7 NDUFB1 COMMD6 SNRPN MT-CO2 FIBP MAF RPL10A CLTC PPIA PPP2R1A SUMO3 COX6A1 MCM5 S100A8 GDI1 COX8A VAMP2 RPL38 KCTD12 SLC1A3 PFN1 C19ORF53 PMEPA1 MTRNR2L12 MT-ND4 LIG1 PET100 WFS1 TGOLN2 TMA7 ARFGAP2 ATP5I CALM1 CD63 YWHAH PGAM1 ETFB MT-ND4L RPS2 S100B CLSTN1 NFE2L1 RPS4X TBC1D15 COX5A GPR56 YWHAZ RPL39 TMX4 CST3 GNB1 STMN1 STOM MYL6 IDI1 ATP6V1C1 SERF2 UQCRB RAN GAPDH MMD SNRNP25 PCBP1 NAT8L EIF4A2 CDS1 HSP90AA1 MORF4L2 PRELID1 MAPKAPK2 LDHB KLHL5 C1QB MRPS7 UQCR11 PADI2 ATP6V1F PRKAR1A NDUFA13 RNASEK-C17ORF49 ZNF385D SYTL2 RAB3B ESCO2 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "microglial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPP1 MT-CO1 SNAP25 SYT1 MT-CO3 MT-ND4 CHN1 MT-ND3 MT-ND2 TMSB10 PPP3CA GAPDH RPL41 HSP90AA1 ANGPTL4 EPS15 VSNL1 PIK3R1 ATP6V1C1 CLSTN1 DYNLL1 CALM1 NRGN TSPAN7 FAIM2 CKB PGM2L1 FAM131B CADM2 DNM3 TUBB2A SNCA SLC24A2 SRP14 MT-CO2 SERINC1 SCOC RPL15 NRCAM TGOLN2 GLUL ACTB TUBA1B PAK1 PEBP1 KIF1A CALM2 NFATC2 GJA1 APLP2 SLC39A10 GAP43 SNCB HSP90AB1 SLIT1 CLU COX6A1 CA11 MTRNR2L12 PRKCB SPARCL1 CDK14 ABCC12 UQCRC1 ATP5I SLC25A6 PREPL CLTC NUAK1 CLSTN2 STMN2 CYCS ATP5E APBB1 SLC38A1 ATP1B1 SSPN PAFAH1B2 TMEM70 PPM1A JUN PDGFD EID1 NWD2 AZIN1 SCN1A ACTG1 MTHFS A2M PTGDS TPT1 HSPB1 DDAH1 RP11-195F19.5 EDF1 VAMP2 MT3 NTN4 SMIM1 ATP5J PPIF SCN1B NDUFAF2 EGFL7 NGFRAP1 ADAM28 PRKCE RPL36A SLC9A6 STX1A MLF2 C1QC CAPZB MAP1LC3A ZFAND5 UBE2L6 ATP1A1 ATP2B2 BEX1 FGFR3 SLC25A4 ALKBH7 COX7A2 APOE PRNP SUB1 NECAB1 SLC1A2 HOPX YWHAG COX5B GNAQ PRDX1 SDC4 ITFG1 COX6B1 SUMO2 LINGO1 RPL32 SLC17A7 EIF1 CDK5R1 ENO1 RPL12 HSPA4 FXYD7 MGST3 TUBA4A PACSIN1 TSPYL1 ATP5G2 CAPZA2 TXN GPR56 RPL37A TOX2 RPL13 UQCR10 HSPE1 IFI35 PPIA RORB DKK3 CADM3 EFHD2 TMEM258 GRIN1 CCDC124 REEP5 CSDE1 CPE MLLT11 SLC6A1 TUBA1A OPN3 GMFB TMSB4X WBP2 CCK TRIM47 KCNC2 MAP2K1 SAP18 PID1 PRKACB GSTP1 PPP2R1A UQCRC2 ERH LYN COX7C EPHA6 HPRT1 MTCH1 SOCS3 PLCB1 CPNE8 CDC42SE2 GDI1 ATP2A2 FAM163B DIRAS1 RTN1 DIO2 RPL39 FTL CD14 MAP1B KCNAB2 MAL2 ARL6IP5 CLDND1 PPP1CB NAT8L ATP5B ARF3 CTNND2 ITM2B RPL31 RHBDD2 OLFM1 C14ORF2 MT-CYB ENSA DNAJC6 CAMK2D TOX SMYD2 B3GALT2 PSD3 MT1X GABRA5 PGRMC1 IFITM1 FAM19A2 FXYD6 CTBP1 MYEOV2 GRIN2A GABARAPL1 AK5 NDUFA5 TMEM59L PARM1 CMPK1 ENO2 LPAR6 RPS3A PSAP ENC1 CALM3 CPLX2 APP ITGA6 ACOT7 LDOC1 MORF4L2 NCBP2-AS2 C18ORF32 PPP2R2B FBXO2 SLC30A3 MFSD6 UQCR11 TBC1D15 DNAJC21 SYTL2 B2M NGRN ALDOA SERF2 RAB3B RPL21 MIF RPL17-C18ORF32 RPL17 PCDHA10 PCDHA4 PCDHA9 PCDHAC1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "microglial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CSF1R MTRNR2L12 ZFP36L2 FTL MT-CO3 ITGB2 ACTB MT-CYB ARHGAP24 RPL41 RPL37A CLTC APOC1 RPL35 RGS1 MT-CO1 C3 PARP14 EFCAB13 FCGR3A STAB1 MTRNR2L1 MT-CO2 IL6R CD14 MTRNR2L8 MTRNR2L6 TPT1 MT-ND4 CTSD TCEB2 PLSCR1 YWHAZ TUBB ITM2B RPL13A CTC-575D19.1 EPS8 LAMTOR5 WBP2 SRGN GSTP1 CALM2 RPL15 CD63 HAMP UBA1 PPIA C1QC COX17 TXNIP MT-ND2 SYT17 KCTD12 APEH RPS5 TGFBR2 ZBTB20 PSMB5 CHADL PSAP CD93 CMAHP BASP1 GIMAP4 SELT CISD1 NFIA ARL6IP5 TMSB4X MT-ATP6 UROD SYPL1 RPS27A RPL11 MT1F APOE MARCKS DOCK8 SYNJ1 RPL31 PLAUR C1QA ZFP36L1 MS4A7 PECAM1 ELMO1 MORF4L1 POLR2L NDUFA13 ZFP36 ALPK1 SLC40A1 PSMD2 SEZ6L2 ITFG1 IFI44L COX7C\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "microglial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTL TMSB4X RPL37A RPL35 RPS28 RPS15 RPL13A RPL31 RPS6 ATP5G2 RPL41 ZFP36L1 TMSB10 HAMP FTH1 UQCRB GNLY RPS27A RPL11 RPL38 RPL23A SERF2 RPL17 RPL26 RPL12 RPL3 MS4A7 RPS5 GMFG S100A8 RPL8 RPS2 UQCRH RPL32 PTMA CHP1 COX7C UQCR11 FGL1 RPL10A SLCO2B1 A2M TUBA1B ATP5I RPL6 EDF1 ZFP36 C1ORF56 RPL39 CSRP1 PALD1 DYNLRB1 TRAPPC1 PCDHA4 LMO2 MRPS7 RPL18A BST2 MT-CO2 MT-CO1 DISC1 PGK1 TUBA1A LPAR6 MTRNR2L12 CD24 MAF PFDN4 RPL15 TMOD2 PGD WIPF1 RPS12 RPS19BP1 CALM3 UBE2D2 C4ORF3 RPL21 C1QB APOC1 GLIPR1L1 CLDND2 SPP1 POLR2L PFN1 IPCEF1 RPS4X MS4A4A PARP14 TERF2IP GNB1 ANAPC11 OAZ1 PSD3 MT-CYB SLC25A6 RPL13 GAPDH RAB11A SLC12A5 ITPR2 PCBP1 CBX6 PARP9 CAMK2D FKBP1A PET100 UBA52 RAB3B LAMTOR2 TM6SF1 DNAJC4 S100B APLP1 RNA5-8SP6 CDKN1A HSP90AA1 BEX4 RPL36A ANKRD20A11P GTF2B ACTB CCND1 OR6D1P STAB1 CTSD RPS3A IDS CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "microglial cell",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MTRNR2L1 SERINC1 MT-CO2 YWHAZ RPH3A ENC1 VSNL1 ARPP19 MT-CO1 MTRNR2L12 TMX4 CAMKK2 NPTX1 SNX10 NRGN ARPC4 NUAK1 ATP1B1 PPP3R1 LDB2 TSPYL4 CAPZB GPR26 KIF1A NDUFA13 SYNGR1 PCSK1N DUSP6 TMSB4X SNRPN RPL12 RP11-111M22.2 DYNLL2 CTSD PPP2R2C GAP43 DDN CHN1 EIF4A2 KRT17P6 PHYHIPL NDRG4 ATP5I INA CKB CMAS ALCAM PRKCB RPS15 LMO3 ATP6AP1 MT-CO3 UQCRC2 CALM1 NCAM2 ATP6V1A FAIM2 PFN2 VGF RHOB TOMM20 MT-ND4 LMO4 YWHAQ IPCEF1 PAMR1 LCAT KIFAP3 MYL6 TBR1 FNDC4 CTNNB1 TSC22D1 RLIM MT-CYB ATP2B2 MT-ND4L SCAMP5 EPHA6 PPP1CB CYP26B1 CSDE1 KIF5A COX7C ATP6V1F PEG10 RPL21 IDH3A EPB41L3 FSCN1 CTNNA2 PAK1 TPPP MTRNR2L6 ONECUT2 FASN PPP3CB KLHL12 NECAB1 MRAS TRIM37 UCHL1 CCK CALM2 KCNAB2 PLCB1 MT-ND3 PREPL HPX TSPAN7 CYFIP2 MTX3 SPRYD3 VSTM2L PTK2B SEPW1 NDUFB4 UQCR11 ATP5A1 RPS26 ARFGAP2 PCDHAC1 PCDHA9 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MTRNR2L12 MT-CO3 MTRNR2L1 CHN1 MTRNR2L8 SNAP25 MT-ATP6 SPARCL1 TSPYL1 MT-ND4 CALM3 NRGN MTATP6P1 ENC1 CALM1 MT-CYB TCEB2 RPL35 NUAK1 ATP1B1 MTRNR2L6 MT-ND2 CPLX2 LMO4 CALM2 NCDN SARAF POLR2M PIK3R1 RTN4 PINK1 ARL6IP5 OST4 RPS15 PEX5L ACTB CLTC CDK5R1 CCK TSPYL4 MT-ND1 RTN1 STXBP1 AP3S1 MBOAT7 HOPX DPYSL2 VSNL1 ARL1 SYT1 YWHAZ SNCA SYTL2 TMX4 ARF3 HSP90AB1 FTH1 PPP3CA MT3 PEBP1 NHP2 BIRC5 PPP1R9B ZDHHC12 MAPK1 KLF10 TUBA1B CST3 CHL1 RTN3 TMEM151A ZFP36L1 EIF4A2 ID2 SLC17A7 COPS8 SLC7A8 PREPL SRP9 HDDC2 HMGCR ATP2B2 DUSP6 PPP3CB CBX6 YWHAG ATP5B MT-ND4L WARS ATP5J TMEM158 SNN PSMA7 NDFIP1 ATP1A2 BSN TUBA1A SYNGR1 GAPDH RPL15 SYT11 MAP7D1 MAP1B GNAQ NGFRAP1 ENO2 PCBP1 NDUFS6 YWHAH DNAJC5 LSM4 CAMKK2 TSPAN7 THY1 CNR1 PRKACB PHYHIPL NGEF PPP1CB SCN3B C2ORF80 CD59 RABAC1 STMN3 EIF1 PDP1 PPIA TPI1 NEFL NDRG4 OPCML PRUNE2 TSPAN4 MAPRE2 PPP3R1 ERBB4 BSG NFE2L1 TSC22D1 SUMO2 ABHD8 UCHL1 EIF1AX GABRA1 WSB2 CNTN1 MZT1 ARPP19 MRFAP1 GRIN1 DNAJB9 TPD52 SERF2 RPS4X WBP2 GPM6A LAMA2 ISCU PEA15 TMSB10 UQCR10 ANO3 RPL13 RAB40B LINGO1 TALDO1 CCDC121 CPLX1 NELL2 PCDH19 LRP1B SSBP3 HNRNPH2 SERINC3 TMEM130 LINC00087 FSCN1 SLC19A1 DHCR24 NFIA HIGD1B POMP SYT5 OXR1 NECAB1 UBQLN2 PAK1 UBE2V2 CA10 NAPB BASP1 CHCHD2 NRCAM SV2B OLFM1 PCDH8 DYNLL1 STX1A RGS4 PTN PRNP FAIM2 NDUFA4L2 SMAP2 RPL41 SLC39A3 TMEM59L CLSTN1 PJA2 PHYHIP BEX2 ELAVL4 NDUFS5 DDN MT-ND3 LDHB TUBB4A DCLK1 PFN2 RHEB TRHDE SYT13 NPTN RPS26 REEP2 DNAJA1 WBP11 SYNPO GSTT1 PDGFRB SGCD RAB3A RAB11A MTCH1 CD63 TMA7 RAB2A SERPINE2 ATOX1 MTND2P28 FKBP4 SNX10 GDI1 RAB3C RPL39 CAPNS1 HMP19 IDS RP11-219A15.1 TUBB3 GABARAP PLEKHD1 RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RPL26 ATP1B1 CHN1 RPL38 ENC1 RPL36A NDUFA13 TMEM59L RPL13A TBC1D15 DNAJC21 LPPR4 CALM3 TUBA1B NRGN PTPRS SLC39A10 VAMP2 ACTB SEPW1 FAT3 RPL31 STMN1 RPL39 RPS15 SARAF OAZ1 PPP3CA RPS27A OR6D1P BEX2 CFL1 LMBRD2 UQCR10 UQCRB RAB6A COX5B MT-CO1 SNAP25 C7ORF50 FAM127A C14ORF2 CREG2 IDS HBG2 C1ORF233 RPL3 MAST3 PTGES3 EIF4G2 NDUFAF2 TUBB4A PPARGC1A SMAP2 KRAS NPTN GPR26 TCEAL5 NDUFA12 SLC9A6 POLR2I UROD SCN1A GUK1 TUBB4B UQCRFS1 SGK223 PRKACB ANXA6 SYT1 EDIL3 BRK1 ARL6IP5 ATP5J2 ARPP19 BNIP3 SRP14 SUCLA2 UQCRQ RPS6 CERS6 DPP6 MLF2 ATPAF1 RAD23B TMSB10 SSTR2 BLOC1S1 NECAB1 C2ORF74 THY1 GPX4 PLAC8L1 ATP2A2 OLFM1 ATP6V1B2 YWHAZ PDE1A RPL18A LMO4 RPL15 SERF2 RPL23A C9ORF16 RGS12 AP1S1 COX14 UROS TMTC1 NEK6 NGFRAP1 NEFL HMP19 MDH1 UBB NDFIP2 ARF5 GNAQ PSD3 YWHAH RPS28 C1ORF56 NPTX1 MMD TPT1 PPP3CB LDOC1 NDUFB7 COX6C SLITRK1 PGK1 RPL37A TPI1 CKB SMIM12 RTN3 CDC42SE2 HSP90AB1 PGM2L1 YWHAG GABARAP RPL17 NUDT21 RP11-219A15.1 RPL17-C18ORF32 RPL41 HNRNPA1P40 MIF PCDHA10 PCDHA4 PCDHAC1 PCDHA9 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND3 SNAP25 BASP1 RTN4 CCK ATP1B1 MT-ND4 PPP3CA TSPAN7 MT-ND1 TOLLIP GPM6A RBX1 MT-CO2 OCIAD1 FTH1 YWHAH RPL31 NFIA ABHD14A DYNLL1 FAM84A CALM2 STMN1 MORF4L1 FTL ELMO1 RAB3B STRAP HSPA4 APLP1 CLSTN1 PNMAL1 PTMA PPM1A NEFL STXBP1 NHP2 PRKCE COX4I1 SH3GL2 STMN2 RGS4 TESPA1 STMN4 CALM1 CRIM1 MT-CO3 NDRG4 CNTN1 SPTBN1 SERPINI1 GABRA1 TRMT112 NRGN PSAP SNX10 RAB3C KRAS BEX2 NPTN SKP1 PRKCB SEPT4 ATP9A ATP6V0C HS6ST2 RNASEK-C17ORF49 RPS28 CLTC VDAC1 RPL26 SMYD2 SEPW1 NGFRAP1 MIR6723 TBCB TMEM132D RPL18A SNX3 MET ATP5G2 PDE1A MYL6 SCN1B ZBTB18 VSNL1 ATP6V1B2 SNCB COL5A3 TUBA4A DKK3 KLC1 MTPN ITM2B ANO3 OLA1 ACTG1 OAZ1 PRNP OAT NDUFB7 BSG STMN3 UBB YWHAZ FARSA NECAB1 MTG1 MORF4L2 FBXO2 ATP5J YWHAB PSD3 DCTN1 TMEM14A CFL1 CRIP2 CPE ID2 CKB GJB6 CHL1 SYT1 POLR2I ATP2B2 COX8A MT-CYB ENO2 SELT CTNND2 TMTC1 CDH13 GABRA5 SYNGR1 PRELID1 TSPYL1 SLC6A17 RPL13 SYNPR IDH3A RTN1 DDAH1 GLO1 MRAS DSTN TMOD2 SYNGR3 MAP2K1 GLRA3 MRFAP1 VEGFA ENO1 PDZRN4 SV2B ACTB TMSB4X WDR47 PPA1 BIRC5 RTN3 HMGCR GRIN1 PINK1 NAPB SERINC3 COX7A2L HIST1H2AC PSMB3 PTPRS HSP90AB1 SNCA DYNLT3 SUMO2 ARL8A NAP1L3 TSC22D1 ARL6IP5 CALB1 TOMM20 RAB6A NBL1 CA11 IFI6 EIF4A2 GTF3A MTRNR2L12 EIF1AX MAP1B TCEA2 TPRG1L TAGLN3 CADM2 RP11-20I23.1 TRIM37 ZNF880 RAB31 NDUFB11 FAIM2 GSKIP FIGN CREG2 ATP1A1 SYT4 OPN3 SLC24A2 KIF3C PARM1 ARPP19 RPL32 PREPL HNRNPA1P40 BSCL2 RPL41 TF DNAJC21 TBC1D15 RPL13A RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SNAP25 TSPYL1 MT-CO2 PIK3R1 ARPP19 CALM2 TSC22D1 TUBA1B RTN4 ADD2 BEX1 CALM1 UQCRB MTRNR2L12 GLRA3 ENC1 ATP1B1 NRGN PCMT1 FTH1 CTNND2 SLC25A6 ATP9A DYNLRB1 ACTG1 MT-ND1 TMA7 DPYSL2 PEX5L NAPB BASP1 TCEA2 PKM RPL32 HMGCR HSP90AB1 PGK1 ATP2B2 MT-CYB PTK2B PRNP SERINC3 COX7B MAP1B FKBP1A APP EIF4A2 RPL12 OAZ1 RTN1 NPTXR NGFRAP1 NDFIP2 MAPK1 C9ORF16 CADM2 NAP1L3 AES SLC9A6 PRKACB UQCR11 MTRNR2L8 ATP1A3 BAD CLTC BANF1 PELI3 BEX2 NHP2L1 TUBB4A RAB11A VAMP2 C1QL2 CDK5R2 PGM2L1 APLP2 RPL36A PHPT1 DKK3 JAKMIP1 GABRA1 RAP2A RPL35 FAM3C RPS27A CTSD CBX6 ATP6V1C1 HPRT1 ARHGAP35 HMGCS1 STX1B HSPBP1 ARHGDIG CPLX2 EIF1AX RNF11 RAB7A ARHGDIA COX4I1 CADM3 REEP5 MBP OLFM1 DPP6 OR6D1P EPHB6 QDPR GDE1 RAB3B NUDT4 CSDE1 SUMO2 PPM1A SLC39A3 C14ORF132 SELT RAB3C GPATCH4 ATP5B ALCAM ARF5 SYNPO RPL13 TOLLIP YWHAZ C19ORF53 RAN CREG2 PRKCB NDUFA8 GPR158 FXYD6 HNRNPH2 HINT1 GAPDH PFN2 NDUFB1 GRIN1 GDI1 MSMO1 NCEH1 STMN3 FIS1 RPS4X YWHAQ ELOVL7 RPS15 DNAJB9 TM2D3 SLC22A17 NREP KIF1A SNCA NECAB1 DYNLL2 HOMER1 ATP2A2 MT-ND3 PIN1 CD63 LMO4 THY1 TSPAN7 CCDC25 NCDN SSBP3 SEZ6L MB21D2 BIRC5 ATP6V1B2 SNX3 MAP7D1 GRIN2A NEFL CAP2 TPPP NAA38 SLC17A7 CAPZA2 NIPA1 SLC6A17 ARF3 KLHL5 WASF1 RPL3 KIF3C PREPL TUBB2A TUBA4A CTNNA2 SCAMP5 ID2 COX8A GPM6A PSAP UCHL1 WBSCR17 SYT4 SULT4A1 NDUFA2 GRIK1 PPP3CA ENO2 CHL1 PPP2R2C NDUFA4 EFR3A BEX4 TKT SLC12A5 DIRAS1 SLC8A2 SARAF CADPS2 NNAT ATP6V1A YWHAG SERPINI1 C14ORF2 NDFIP1 TMEM130 CHN1 RPS26 INSIG1 CLSTN1 GDA CCK SYT1 PRKCE ITFG1 CDK5R1 DUSP2 LZTS1 H2AFZ RTN3 COA3 PNMA2 CPE DNAJC4 RPL39 APOLD1 RPL17-C18ORF32 C11ORF31 RPL17 PSMB3 TUBB PCDHA9 PCDHA4 PCDHAC1 PCDHA10 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 MT-CO3 CHN1 TMSB10 CCK DYNLL1 MT-CO2 SYT1 MAP1B FTH1 MT-ND3 TUBA1B ATP1B1 ACTG1 MARCKS ATP6V0E2 MT-ND2 CALM1 MTRNR2L1 RTN1 MT-ND4 JUND TBR1 ATP6V1A CAMKK2 TAGLN3 HSP90AA1 ATP2B2 DPYSL2 FKBP1A SPARCL1 ATP5E PFN2 SPOCK1 NAP1L3 THY1 SUB1 HPRT1 TMEM59L SERINC3 CREG2 YWHAB CLU ARF3 SYT11 BRK1 MT-ATP6 VSNL1 MT-ND1 ENO2 TMEM155 UBQLN2 C1ORF52 GNAQ NDUFA13 SYNPR RTN4 PRKCB RAB6B GAPDH GRINA RTN3 YWHAZ ENC1 LINGO1 PPIA YWHAG ARHGDIG IPCEF1 NPTXR MAPK1 CMAS PPP1CB TSPYL1 PLCB1 CLIP3 WDR47 TOLLIP ATP5I PRNP TMEM14A SERF2 NRGN CALM2 RPL31 ZFP36 KCNAB2 PGM2L1 PPP2R2B ARHGAP35 FKBP8 CTNNA2 RPL8 UBB NPTN OPA1 LL0XNC01-16G2.1 NPTX1 ENSA BASP1 GPR158 EXTL2 AHNAK2 SOD1 KLHDC3 PACSIN1 NGFRAP1 CEND1 EIF1AX EFHD2 MAP2K1 MTRNR2L6 GHITM SNAP91 USP5 CLSTN1 SDCBP AZIN1 SH3GL2 TPRG1L RPL35 ACTB PPFIBP2 EIF1B TPT1 FAM134A MFSD2A MZT2B BCAP31 TUBB4A SYN1 TUBA1A CCDC85B GPX4 TSPAN7 PSMC1 CDK14 YWHAQ EDIL3 CABP1 CLTA NELL2 SCOC UBA52 CAPZB CKS2 GADD45B ARL8B MAP1A GOLIM4 ATP9A NDUFS5 ACTR1A BSG STX1A RXFP1 RPS15 COX7C AP2M1 SLC24A2 RP11-111M22.2 SLC17A7 C7ORF50 PTPRS MRPL55 WSB2 RPL13 FAIM2 TBCA MTCH1 MRPL20 RASGRP1 AES HK1 PCDHA4 SNCA PLD3 SLC39A10 NEK7 DIRAS2 CERS6 KLC1 BAD PRDX5 GABARAPL1 SARAF NEUROD6 RNF208 MRPS21 MAPRE3 NUAK1 INSIG1 NEGR1 NBL1 KIF1A NKIRAS1 RPH3A CYFIP2 ATP5A1 DCLK1 RPL13A NDUFV1 BCAT1 EDF1 ARL6IP5 CD99L2 EGR1 GNG3 SCD CKB PEBP1 CNTN1 RAD23B SLC12A5 CAMK2G BEX4 PRKCE MAPK8IP2 WBSCR17 ATP6AP2 NECAB1 RPS27A RAB2A COPS8 APBB1 BNIP3 UBA1 UQCRH NDUFAF3 NDRG4 CDK17 COPG1 GUCY1B3 FBXW11 CCT5 RPL37A SRP14 LMO4 SCN1B KLHL12 ATP1A2 HS3ST4 TUBA4A VDAC3 SLC1A2 GDI1 ATP6V1B2 SNX3 TCEB1 COL24A1 ATP1A1 GPM6A USMG5 VDAC1 CDK5R2 MIF PFN1 RPL10A FIGN COQ10B PSMD8 PNKD RPL6 ATP6V1E1 COX7A2L RAP2C LGALS1 FAM229A RPS19BP1 UHMK1 RPL12 DYNLT3 AK5 RELN STMN4 ARPP19 CADPS2 C9ORF16 POLR2I SPCS2 PNMA2 SLC9A6 SPOCK2 LPPR4 AP1S1 GMFB PCMT1 COX5B REEP2 MYL6 CADM2 PPM1A TERF2IP HSP90AB1 MTPN ELAVL4 SMIM13 MT-ND4L WBP2 PPP2R2C C19ORF53 ZFAND5 PET100 FABP3 PIK3R1 NDUFB2 CALM3 POLR2L SKAP2 RPL41 IDS RNASEK-C17ORF49 ATP6V0C RP11-20I23.1 NUDT4 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RPL37A SEPW1 RPL11 JUND UQCRC1 TLE4 RPL32 RP11-111M22.2 SPTBN1 MT-CO1 RTN3 ARF3 PRKACB RPL36A RPS27A BIRC5 SNAP25 TUBA1B PSAP NRGN RPL38 RPL21 ATP1B1 SPARCL1 KLC1 PDCD5 MAP1B SEPT4 VSNL1 RAP1GDS1 RASGRF1 CHGB TIGD4 TERF2IP CDC37 MORF4L2 THY1 PPIA AP2B1 PTPRN CDK5R1 UQCRFS1 RPL10A ATP2A2 SV2B RPL23A ATP13A4 KCNAB2 WBSCR17 ATP5I DDR2 SCD CRYAB POMP PRNP CLU RPS6 CACNB1 SLC25A22 PPP2R2C BEX1 TPT1 LAMTOR1 FABP3 RPL35 ENC1 CHN1 UQCR10 DSTN TENM1 WBP2 RBX1 UBE2QL1 NDUFB7 TSPYL1 USP5 CALM2 ATP1A3 RPL41 NRCAM SYT1 TUBB4B NDUFB8 PPP3R1 CAMK2D YWHAZ SELT PLD3 USMG5 HTR7P1 ATP6V1F NDUFS5 FTH1 VIM SEMA3C TRAPPC1 SLC17A7 ARF5 NGFRAP1 TUBB2A UQCRH PRKCB PPP2R4 ITPR2 ANLN HIST1H2AC ATP6AP1 C1ORF56 SCN3B RGS4 C2ORF80 SUB1 CALM1 SYNPO RTBDN MFSD6 DNAJC6 NDRG4 SYT11 COPE GABRA1 C6ORF1 HSP90AA1 CNR1 TUBB4A UBE2D2 UBE2E3 UQCRB GUK1 MAP1LC3A ARHGDIA NPTX1 YWHAQ YWHAH SH3GL2 RPS15 PPP3CA RPL31 ATP6V0C RP11-20I23.1 TUBB3 IDS RPL13A CYB5R3 PCDHGA5 PCDHGA10 PCDHGA6 ARFGAP2 SYTL2 ZNF385D HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND2 MT-ND3 MT-CO1 MT-CO2 MT-ND4 MT-ND1 MT-ATP6 MTRNR2L12 SNAP25 MT-CYB YWHAZ COX6C RTN3 DIRAS2 RP11-219A15.1 NRGN NAP1L5 RGS12 CABP1 MTATP6P1 RPL31 TOMM7 MIR6723 NCAM2 NDUFB2 FBXO2 OLFM1 ARFGAP2 ARL6IP5 NPTN NEUROD1 NDFIP2 NPTX1 ACTG1 APLP1 CRIP2 GPM6A TMEM35 RPS2 GRIN2A CTDSP1 MTRNR2L1 FAIM2 ATP5B DGKG RP11-111M22.2 OPN3 ARL6IP1 SPTBN1 ATP6AP1 SERPINE2 YWHAQ CDK5R2 APBB1 RPL23A GNAQ CHL1 TF RPL26 MORF4L1 PRKACB TMOD2 RASGRF1 CA11 TAGLN3 PRKCB GDI1 RPL37A SMAP2 SEPW1 MTRNR2L8 NCOA4 SERF2 CLSTN1 RPL32 ATP1B1 UQCRC2 RPS27A BAALC SYT11 REEP2 SLC17A7 LMO3 GABRA1 ONECUT2 NBL1 HOMER1 CALM1 TEX2 SLC39A10 PPP3R1 PKM FKBP4 DYNLL1 TBR1 SLC38A11 MTX3 PPP3CA CREB5 RHBDD2 QKI SARAF APLP2 GUCY1A3 CDH13 TBCA CHN1 HS6ST3 ARL2BP PJA2 CALM3 BCAP31 RPL3 ALDH5A1 SV2B HNRNPH2 KIF1A SNRPN PTMA STUB1 PPP3CB PLCB1 EGR3 TANC1 IDS ALDOA RAB3B SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "mixed excitatory neuron",
"role": "assistant"
}
] |
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