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[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 MT-ND4 MT-CO2 MT-CO3 RAB3B MT-CO1 ZNF385D TMSB4X SYT1 MT-ND2 SPARCL1 RTN4 MTRNR2L12 SST SEZ6L2 SNAP25 ERBB4 COX7C SERPINI1 RPS28 SLC24A2 BEX1 CKB SLC22A17 KCNC2 GAD1 VAMP2 GAD2 CALM2 MT-ATP6 MAP1B YWHAG ENO2 PRKACB LGALS1 ATP1A3 NARS COX4I1 TAC1 SULT4A1 IDS SNRPN PGRMC1 PTMA TPI1 MT-ND1 STMN2 LUZP2 SLC6A17 TSPAN7 RNF11 APLP2 MT-CYB LANCL1 TUBA1B DYNLL2 PLCB1 FAIM2 MTRNR2L8 CFL1 DNM3 GPX4 VSTM2L PRNP GAPDH RTN1 MDH1 ACTB SLC38A1 HSP90AB1 RPL13A RAB3A NDUFA4 KLC1 GPM6A PEBP1 SLC32A1 MORF4L2 CCK LDHB PRKCE ATP6V1A CCDC85B SYNGR1 NCEH1 STMN1 KCNAB2 TSC22D1 NEGR1 HSP90AA1 PJA2 AP1S1 COX6A1 ZNF536 UBC PNMA2 YWHAB ARHGDIG SPTBN1 ATP5I CALM3 PGAM1 MPPED1 NGFRAP1 CHN1 EDF1 COX8A RP11-20I23.1 RPL21 PFN2 NXPH1 NAP1L5 NDUFB1 MT-ND4L C19ORF70 RAN APP TMOD2 GUCY1B3 TOMM7 DPYSL2 MTATP6P1 GNG3 SEPW1 FUNDC1 MAP7D2 ATP6V0C RPL26 FAM96B SYTL2 COX6B1 NAPB UQCRC1 KCNV1 MORF4L1 ATP5E UBE2QL1 RBX1 SLC6A1 PKM ENO1 PFDN1 GAP43 COX5A PSMA7 RFK DSTN CLU SYNGR3 PAM FAM71E1 MRPS21 LHX6 SYN2 PTPRN2 ECM1 KIF21A SYT11 UQCRH ATP6V1F TSPYL1 SCD5 C14ORF2 INA ATP2B2 WASL CRHBP ATP5G3 NDFIP1 SCN2B TOLLIP ARF3 SLC39A10 TM2D3 PGM2L1 PTPRS PRDX2 DIRAS1 UQCRQ RPL31 C12ORF57 ANXA7 CYCS EPHB6 MAP1LC3B RPL7 ARL4C FGF12 PPP3CB OAZ1 AES SRP9 ZBTB18 ZFAND5 INPP5F UQCR10 NDUFA1 GRIN1 FNDC4 SPCS2 RAB3C MTRNR2L1 RPL13 ATP1A1 ALDOC KIFAP3 NDUFA12 TPD52 ACOT7 PCSK1N BCAS2 MAP2K4 MT-ND3 COX5B SLIT1 OXR1 MYL6 GNAQ FTH1 PIK3R1 ABHD14A OCIAD1 CNTN1 CTNNB1 WBP2 PREPL PPP1CB OLFM1 PPIA NDUFB5 CNRIP1 STXBP1 MZT2B RP11-111M22.2 PPARGC1A PLD3 BEX4 MAGED1 EFR3A SH3GL2 EFHD2 NGRN ALDOA NR1I3 FSTL5 TOMM20 STUB1 CALM1 DNAJB6 UQCRC2 VWA5A YWHAZ EIF4A1P8 MAPK1 EIF1AX ATP6V1E1 RPL18A SMIM3 HCN1 NDUFAB1 TMA7 NAP1L3 CRTAC1 C8ORF4 IDI1 LAMTOR2 CNP MAP1LC3A AK5 RPL38 TMEM130 MAF TENM3 TUBB2B COX7B USMG5 TCEAL2 CLIP3 NDUFB3 NHP2L1 DNAJB9 CHL1 SYNPO LINC00116 ARL8B TOMM22 CAMK2G MRPL15 NUDT4 ATP5G1 NMNAT2 MFN2 CHMP4B COL24A1 HRH3 MAGED2 FAM198B ATP6AP2 BNIP3 SLC9A6 PET100 MAPK8IP2 ARHGAP35 HEY1 EID1 PSMB7 VDAC1 LMBR1 CCDC25 ARPC4 YAE1D1 C10ORF10 NDRG3 NDUFA2 RNF212 HSPA8 RAB2A HCN2 NCDN NDFIP2 OPCML CNTNAP3 NDUFB8 HINT1 ARF1 DKK3 EIF1 LIMK1 VSNL1 GABARAPL2 RPL11 AKR1C2 HMGCS1 MPC2 SCAMP5 FIBP ITM2C TMEM141 TMEM230 SLC7A1 FKBP8 ARHGDIA NEFL LYNX1 CLMN SH3BGRL2 PAFAH1B2 ATP6V1G1 ASPDH RANBP1 CDK5R1 SH3BGRL3 MTND1P23 PEX5L RAB5C CERS6 UBE2N IFI6 GUK1 ISCA1 SSTR2 ACTG1 ELOVL7 AURKAIP1 KIF1A CX3CL1 SPOCK3 RAB27B MARCKS CPLX2 CADM2 NRIP3 CDK14 ATP2A2 SERINC3 MRAS RAB7A MLLT11 GHITM PRKAR1A NDUFA11 NNAT NECAB1 RSL24D1 MLF2 SLC25A4 BEX2 PITHD1 ANK1 STX1B RPL37A PIN1 YJEFN3 GMFB NDUFB10 NCALD PPDPF RAB6B JAKMIP1 CACNG3 RPL32 GABRA1 NFE2L1 ARX CDS1 RPL41 MED10 BCAT1 CDH13 KIF3C ATP6AP1 DNAJC6 ATPAF1 CBX6 RPS26 RASL11B CEND1 PI4KA NDUFB7 QDPR TRAPPC1 NAP1L2 PNKD LDOC1 NEFH ATP5O ELAVL2 MRFAP1 HMP19 PPA1 MPP1 MTND2P28 VDAC2 SAP18 NRCAM THOC7 PLCH1 SOD1 NUAK1 NPAS3 PRKAR1B SKP1 CLSTN1 KIF5A DNER QKI CAB39 ATP5C1 C7ORF50 DPP6 ATP6V1C1 RPL35 C6ORF1 HIGD1A NIPA1 STMN3 PPP1R9B ATP6V0E2 FTL KLHL5 PNOC D4S234E NOP10 WSB2 MDH2 PNMA1 C9ORF16 CHCHD2 BANF1 SPOCK1 PLCXD3 TMEM258 BTBD11 BSG FAM127A RHEB RRS1 STXBP6 RTN3 C1ORF233 TAGLN3 TMEM59L B3GNT1 SLC1A2 SCN1A HNRNPH2 HN1 SNX3 BLOC1S1 DCLK1 NEFM MAPRE3 HS6ST3 APEH GOT2 LINC00087 TCEAL3 UBE2M UBE2E3 HSPA4 PPP3CA SLC25A5 TMEM117 SMIM13 TBCB SARAF POLR2L COX6C CISD1 OLFM2 TBC1D7 CYP4F11 EPB41L3 VPS35 SNCG ATP5B YWHAQ MYBL1 SRP14 PTPRM PRDX1 NDN CCDC124 PSD3 GSTO1 FBXO2 ADD2 TMEM35 SNX10 CDC42SE2 NDUFB11 ANKRD18A AC011043.1 REEP5 ATP6V0B SCAND1 CALN1 KCNAB1 ARF5 MANBAL VWC2L PSMC3 SYT17 ATP6V0D1 B3GALT2 IGF1 HOMER1 UBE2V2 MTRNR2L6 RAB3IP NAA38 SULF2 NDUFB2 TCEAL7 ACTR1A MAP4 MAP7D1 MGST3 UQCR11 CPLX1 RCAN2 NDUFC2 HK1 PNMAL1 ARHGAP6 TMEM147 CLTB ATP6V1G2 CFH BIRC5 SERF2 GABARAP MIF RNASEK-C17ORF49 TUBB TUBB3 NDUFA13 APOLD1 PCDHAC1 AC244489.1 PCDHA4 PCDHA9 PCDHA10 GTF2H2C_2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 ATP1B1 SNAP25 SCN1A SYT1 ZBTB20 PTCHD4 REEP5 PREPL ELAVL2 MTRNR2L12 VDAC3 NFIA PSMD12 ZNF385D FGF12 COX7A1 APP PTPRT BCL11B MAF PRKACB GLIPR1 SLC7A8 MTCH1 CLU BIRC5 YWHAG RAB2A PCDH19 RTN1 MT-CO1 CAPZA2 TSPYL1 ECM1 FTH1 PCDHGA5 RAP2A ARF3 ARFGAP2 HOMER1 NDFIP1 TMEM59L SYNPR TMLHE ATP1B2 FABP3 CDH7 GABARAPL1 RAB3B EFHD2 TENM3 IQSEC1 HPRT1 COX7B RAP1GDS1 RPH3A AK5 MSMO1 WIF1 ASNA1 BNIP3 SUMO2 RGS4 KIF5A MAPK1 DKK3 SYN1 PHYHIPL RPL32 RPS26 ATP6V1A ARL6IP5 PPP2CB HSPA8 ENO2 PI4KA CDK17 MTRNR2L6 COX6C CTNNA2 RPL37A RPS4X KLF2 AP1S1 ARHGAP29 NAPB UBC GABRA1 NRCAM APLP2 SMIM13 RTN3 GDI1 CBLN4 ATP5A1 NCEH1 CLTC MAP2K4 ARHGDIG SLC35B1 VSTM2A RBX1 BTBD1 CA11 QKI ERBB4 ACTR6 PAM ABHD14A RP11-342F21.1 SERF2 OLA1 ACTB ATP5B ARL6IP1 NPTN PPM1A DYNLL2 GLIS3 IGF1 SCN1B TSC22D1 RPL21 FTL ARHGAP35 RAB3IP ZNF319 RGS5 SYTL2 UQCRC1 SLC25A5 PTPRM SPOCK1 LGI3 MMP24-AS1 ATP5E ZFAND4 CTNNB1 POLR2M PIEZO2 RPL31 ATP1A3 ATP6V0E2 ZFAND5 DCLK1 MT-CO3 NDUFB10 CHN1 BRK1 USMG5 KAL1 PCDHA10 ATP2A2 MAGED1 CNTN1 GRIN2A CAB39 TIMP2 ROBO2 RAPGEF5 STMND1 PRNP NGFRAP1 RP11-111M22.2 CNTNAP3 PTPRN2 STX1A GTF3A PNMAL1 FAM3C YWHAB EPHB6 IDS BSCL2 ALDOA AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPARCL1 ATP1B1 MT-CO2 MT-CO1 MT-ND4 SNAP25 MT-CO3 SYT1 MT-ND2 HSP90AA1 CKB ZNF385D MT-CYB CALM2 NDRG4 VAMP2 GAD1 SLC6A1 CALM1 MAP1B RTN3 RAB3B VSNL1 TMSB4X ATP5A1 ERBB4 GAPDH RTN4 ACTB INPP5F HSP90AB1 SNCG MTRNR2L1 APP SCN1A RPS28 MT-ATP6 GPX4 SELM SNRPN MDH1 TENM3 ISCU PRNP CLSTN1 CLU RTN1 PGAM1 THY1 CEND1 GDI1 YWHAG PREPL SLC24A2 FTL ARL6IP1 SERPINI1 COX4I1 RPS15 REEP5 EIF4A2 STMN2 TAC1 STMN3 GABRA1 PNMA2 TSPAN7 MT-ND3 RGS4 FAM3C ACTG1 TCEAL2 LANCL1 ATP1A3 NDFIP1 RPL15 RPL38 PKM COX7C OAZ1 TUBA1B TIMP2 NGFRAP1 ATP6V1B2 SPOCK3 PRKACB C14ORF2 ARL6IP5 RAB3C COX6A1 RAB3A UCHL1 RPL13A BEX1 GAD2 GOT1 SERINC1 VDAC1 UQCRB ENO2 SEZ6L2 PSMA7 NDUFA13 PEBP1 OXR1 TSC22D1 MT-ND5 STMN1 DPYSL2 VAMP1 RPL32 RP11-20I23.1 ITM2B SNX10 NAPB ZNF804A UQCRQ RPL17-C18ORF32 NAT8L CPLX1 SLC32A1 RPL37A UQCR10 UQCR11 NDUFB4 ATP2A2 NACC2 ELAVL2 SLC38A1 GPM6A HMGCS1 VDAC3 RPL6 DKK3 NAP1L2 KCNAB1 ATP6V0C APLP1 UBC FAIM2 RPL13 RPL35 ATP1A1 TSPYL1 UQCRH ACOT7 CTNND2 MGST3 NDUFB2 EIF1AX ARF5 NCDN USMG5 DNM3 SNCB PPIA NDUFA4 ALDOA KCNC2 RPL7 MIF COX7A2 STMN4 CALM3 RPL36A SYN2 EIF1 SNX3 CNTN1 KLC1 AP2M1 POLR2I COX5A CTSD MRAS SOD1 NDUFB3 SUCLA2 NAP1L3 NDUFA11 PHYHIPL PJA2 MAGED1 NCEH1 NDUFS5 NDUFB11 PACSIN1 NDUFV1 SEPT4 STUB1 RAN RPL39 C6ORF1 OCIAD1 EXTL2 UQCRC2 TMEM59L SCOC PPA1 TCEAL7 ATP5G3 ATP6AP2 MTRNR2L6 BNIP3 GABARAPL1 TAGLN3 PTCHD4 TPI1 CHGB ATP5E CCDC85B CYCS NDUFB8 MORF4L1 POMP NDUFA5 SPTBN1 C1QBP VSTM2A MT-ND4L ATP5C1 NDUFC2 ALDOC COPE CALN1 NEFL EFR3A MAPK1 SLC39A10 MTUS1 LGI3 CLTC ATP6V1F RAPGEF5 RPL12 MAP1A RPS3A RPL8 EDF1 MYEOV2 RCAN2 TRIM37 MORF4L2 AES NRCAM CDKN2AIPNL NDUFB10 ATP5J CHN1 REPS2 ATP6V1G1 TM2D3 TMSB10 YJEFN3 TMEM258 SPCS2 SYNGR1 GPX1 CFL1 MTATP6P1 RPL41 RP11-111M22.2 SKP1 PPP1CB NAP1L5 AP2S1 GNB1 SMIM13 DLD ETS1 CAP2 NDUFA12 CDS1 HSPA8 SLC25A11 C12ORF57 PCDH17 TM6SF1 NDUFB7 MTX3 SPOCK2 KCNAB2 RAB6A CDH13 NIPA1 GSTP1 SMAP2 ADAM23 SLIT1 DIRAS1 ARL8B BSG CDC42SE2 EDIL3 NREP GNG3 MT-ND1 B2M TMX4 SNAP91 COX8A SLC12A5 OLFM1 AURKAIP1 APLP2 FTH1 SYN1 AK5 CLEC2L KIF21A TMEM230 MYL12B PSMB5 LMO3 KIF1A PRDX2 WBP2 TPGS2 WSB2 HMP19 DNAJC6 EIF4G2 PHB TMA7 MAGED2 CAMKK2 ATP5J2 MRPS21 ELMO1 CADM2 PRDX1 ARL1 TMEM35 CISD1 HRH3 QDPR SLC25A6 PEA15 C1D DYNLL2 CLTA MLF2 CNTNAP3 OST4 ATP5I NMNAT2 PNKD ATP6V1E1 CAPZA2 SOX6 RPH3A AZIN1 RPL18A RAB6B CLSTN2 FLT3 CSDE1 TUBA1A PRKAR1B ARPP19 MAP1LC3A SCN2B LGI2 POLR2K PPP2R1A SH3BGRL3 PTPRN2 CPE FAM96B KLHDC3 GABARAPL2 MTRNR2L8 COX6C PFDN1 TBCB ATXN10 RAB2A PIN1 HSPA4 SLC6A17 TMEM130 TSPYL4 CHCHD2 NPPC THOC7 NXPH1 PRKCE OPA1 SERP2 RPS2 PTPRM ATP5O MT1X CDKN2D GHITM RSL24D1 SERINC3 C19ORF43 CADM3 COQ10B RNASEK-C17ORF49 FKBP4 HPRT1 CYFIP2 PPP2R4 CLPTM1 ATP6V0E2 COX6B1 VSTM2L FAM19A4 CDK5R2 PNMAL1 ATP9A SNRNP25 DSTN SLC25A5 ACTR10 PTMA SRP14 FGF12 RPS26 GTF3A PPM1A CD99L2 MLLT11 H2AFZ RGS5 RPL31 COA3 TMEM14A UBE2N RPL10A ALDH5A1 KLHL5 DYNLL1 CFL2 SLC25A4 STX1B MTRNR2L12 SCAMP5 ROBO2 ENO1 GLRA2 FKBP8 SYTL2 NSF IDS NR1I3 TUBB2A PAFAH1B2 GLIPR1L1 CD63 EPB41L3 MYO5B TOLLIP RASSF8 BTBD10 FBXL21 SQLE GPNMB ADSS HTR2A SNX22 IQSEC1 COX5B PTPRN CKLF CRKL MRPL15 POLR2M HDDC2 RFK UBB SCN1B TMEM11 TRMT112 SHARPIN DRAP1 PGD ATP5B PPARGC1A SERTM1 REEP2 WBSCR17 TKT MAP2K1 SUB1 KIF5A CAMK2G RAP2A SAP18 PPP2R2C NDFIP2 LHX6 DPY30 MAGEH1 MZT1 ARF1 DMTN OXCT1 BAALC PCDHB4 FAM174A PPP3CB TLN2 GMFB PLEKHG3 BEX4 HOPX PLSCR1 WASL SPRN SH3RF1 TOMM20 PCDH19 RAB4A OPN3 LAMTOR2 NDUFB5 TMEM160 MTFP1 SH3GL2 RAB11FIP5 RAB5C FASN YIPF3 PSMC5 CAPNS1 PEF1 PITPNA BCL2L10 PCMT1 DCLK1 HINT1 PLCB1 LDHB NPTN HOMER1 MAP7D2 ATRN PTPRH ATP5H CBX6 CAPZB WDR47 NHP2 ATP6V0D1 SEZ6L CHL1 TGOLN2 SDCBP PLCXD3 IGFBP6 TUSC2 CTBP1 TOPORS-AS1 RAP1GDS1 CNTN6 RPL21 JUNB UBE2D2 NRIP3 KCNK1 GPR98 SLC9A6 ADAMTS17 PPP1R7 ISCA1 COX7B CDK5 CDH7 NKIRAS1 ATP6V1A GUCY1A3 DNAJA1 CDK14 DYNC1I1 DEXI RP11-632C17__A.1 POLR2L RPL26 PRDX5 PROX1 GDE1 ETV1 CHMP4B HAPLN1 HK1 NDUFS6 STXBP1 UBA52 C11ORF31 HSPE1 TMOD2 C9ORF24 PGK1 LMBRD2 ARL4C BAD SLC1A2 PHLDB2 RABAC1 SMS ARL8A SLC9A1 ST20 NGRN HSPBP1 TPPP UROS PCBP1 LRRC59 APLN OLA1 GMPR TCEB2 MRPL47 PEPD ETS2 YAE1D1 MANBAL PELI3 ATP2B2 TENM1 UQCRC1 UTRN EPHB6 MYO16 HMGCR UQCRFS1 PPP2CA ARHGAP35 CCK ATP5G2 RELN VPS35 MTCH1 MTPN TUBA4A PPP1R9B RHEB SPRYD3 NCAM2 SEPW1 SYTL5 AGT SCD5 SSTR2 UBE2E3 GADD45GIP1 CABP1 TRAPPC1 CRHBP ADD2 CCDC184 PFDN4 GRIN2A ZNF536 PNMAL2 OSTN GUK1 COX7A1 FAM149B1 SLC22A17 RGS12 MTND2P28 ARL2BP NME1 DDAH1 FRMD4B ANKRD2 AP2B1 RP11-345J4.4 CRYM CHI3L1 DYNLT3 ENC1 ZBTB20 USP5 LDOC1L FAM134A DNER DNAJB6 MPPED1 HS6ST3 ZBTB18 PRKAR1A TOMM22 OPCML CLIP3 IGF1 RPS19BP1 ANAPC13 RASGRF1 TOX3 ZNF365 OSGEPL1 NDUFA1 CREG2 ITM2C UBL5 UBE2V2 CDK5R1 SPHKAP ARF3 MRPL12 D4S234E CAMK2D SYT11 ZFAND5 CX3CL1 CACNG3 PSMC3 CYC1 YWHAB PLD3 CITED2 KLC2 TPT1 HRC PFN1 CCT5 PNOC KCNS3 TMEM141 SYT4 ARX PGM2L1 ATOX1 MFSD6 TCEAL3 CCDC74A RP11-656G20.1 ZNF385A RNF181 AP3S1 TRPT1 SEC61G BTBD11 RAB3IP PAM APBB1 RNF144B MAP4 CNTNAP5 SUMO1 TCEAL5 CDC37 NDRG3 PRIM1 KCNK2 COL6A1 LRP1B ATP1A2 RASGRF2 APEH ETFB YWHAZ CHP1 FBXO2 NRSN2 DCC KCNA1 CACNA2D2 LBH FIBP MAF DCTN3 C4ORF3 SULF2 B3GNT1 RP11-195F19.5 TUBB POLR2J RNF11 CTNNB1 CAB39 RHOA WBP11 SUMO2 KCNMB4 WLS PSMD2 C1ORF115 ACP1 HIGD1A TCEB1 NDUFAB1 FKBP7 FARSA MYL6 GRINA SELT CDCA3 CCDC115 FXYD6 GRPEL1 DNAJC5 BTBD1 PCDHB11 MZT2B PRDX3 RPS5 ELAVL4 MT1M SARAF BRK1 RAB11A MIR6723 BAG4 PIP5K1B ZCCHC17 NDUFA2 MRPL33 FAM127A NPTXR FAM159B NHP2L1 LAMTOR1 EPS15 PHYHIP ATP5F1 QKI UBE2M MAP1LC3B TMTC4 FABP3 ATP6V1G2 RPL3 APOLD1 PSMB3 RPS10 IFITM1 CORT GTF2H2C_2 PCDHA9 PCDHA10 PCDHAC1 PCDHA4 AC244489.1 TBC1D15 TUBB3 CFH BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SYT1 MT-CO3 MT-CO2 MT-ND4 ATP1B1 GPM6A VAMP2 MT-CO1 MTRNR2L12 SLC12A5 MT-ND3 DNAJC21 MT-CYB ATP1A3 SLC6A1 THSD7A MT-ATP6 MTRNR2L6 PRNP AK5 SCG2 MT-ND2 NEGR1 SRP14 GABRA1 GAD1 GAP43 NAPB DNAJB9 MT-ND1 FAM84A CCDC85B AES BCL11B SYNJ1 DYNLRB1 CAMK4 ATP1A1 QKI HEY1 SYT11 KCNAB3 CNTN1 RTN1 MAP1B SCN3B PFDN4 RABAC1 RND3 NECAB1 PREPL GLRA2 INPP5F PJA2 HSP90AB1 NDRG4 PSAP PET100 CHN1 TAC1 STX1A MAFB PRKAR1B CLSTN1 VSTM2A MAF MBP RAB6B OPA1 TMEM150C PLCXD2 MAPK8IP2 TUBA1A PNMA2 COPE CALM2 NARS VEGFA YAF2 FGF12 NIPA1 STMN4 HMP19 KCNK1 CTSD PCDH19 PVRL1 REEP5 PLCXD3 PEBP1 SARAF NDUFB4 CA8 DNER MTRNR2L8 RPL41 PCDHA4 PTMA TSC22D1 TPRG1L OAZ1 ACAT2 SNCG B2M PPP1CB PRKAR1A SPARCL1 CDK5R1 GPR98 PEA15 PTGES3 ALCAM CTBP1 RPL23A ATP5F1 GMFB ATP6V0E2 RAB3C BTBD11 JUN CEND1 RPL3 CALM1 MTUS1 TOLLIP PPP2R2C CKB CACNG3 ERBB4 ZNF385D SYTL2 RAB3B RP11-111M22.2 IDS RP11-20I23.1 BIRC5 C18ORF32 RPL17-C18ORF32 ATP6V0C NSF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MT-CO3 NR1I3 MT-CO2 ATP1B1 RAB3B MT-ND3 NDRG4 SNAP25 ESCO2 RPS27A TSC22D1 NREP VDAC3 KLHL5 GOT1 UQCRH MT-ND5 CISD1 PRKACB DNER MT-ND1 EIF5A2 FAM150B CDH8 ATP2B2 PCDHA4 TBC1D15 DNAJC21 HHATL FAIM2 NDUFA5 ITM2B LGI3 LMBR1 UQCR11 MRPS7 PARM1 GSTT1 TPT1 SCN1A SOX2 MT-ND4 GHITM NDFIP1 MAP1B OCIAD1 SPCS2 STK32B SNAP91 TSPYL1 GLIS3 ATP6V0C SKP1 SMIM13 MTX3 CALM1 RPL15 NDUFB3 OXR1 ELAVL4 RPS4X ATP6V1C1 SYNJ1 PITPNA NPTXR SLC17A8 MLLT11 OPA1 RTN3 PPARGC1A GABRG1 ADAMTS17 HMP19 TPGS2 OAZ1 SPOCK3 POMP CAPZA2 SLC25A11 MT3 ARL8A EPS15 HCN2 GAD2 BSN GABRA1 CTD-2179L22.1 SERPINE2 ARL6IP1 DGKG GDI1 SNCB MT-ND4L GLIPR1 SERINC3 OST4 ADD2 MTRNR2L6 PLCXD3 PAM GNB1 SYT1 PSMB7 BTBD10 GAD1 SYNGR1 ATP5C1 PRNP PPP2R1A C1QBP NAP1L5 ZBTB18 VEGFA BTBD11 EIF1AX ATP6AP2 UBE2V2 ZBTB20 MT-CYB UROD CPLX2 PLD3 KCNC2 CHL1 ATP5J TOMM70A COX4I1 HNRNPH2 MTRNR2L12 MT-ATP6 CLSTN1 RGS4 JUND WDR47 RTN4 CXXC4 RP11-111M22.2 PPP2CB CDC37 RP11-20I23.1 RTN1 ARL6IP5 FAM198B INPP5F CEND1 LPAR6 NSF IDS RPS28\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MT-CYB MT-ND4 MT-ATP6 MTRNR2L12 MTRNR2L1 MT-ND2 MT-ND1 SYTL2 ZNF385D MT-ND3 KLC1 MTATP6P1 MTRNR2L8 TBC1D15 ERBB4 RP11-111M22.2 PEBP1 RPL37A HSP90AA1 SOX6 TF MTRNR2L6 MEPE SNAP25 GAD1 PRDX3 SPARCL1 ENO2 RPL32 EIF1B MT-ND5 TUSC2 SIRPA ATP1B1 GOT1 DYNC1I1 TCEB2 RPL39 INA SERINC1 PACSIN1 CALM3 CAPZB CNTNAP3 TMEM130 COX4I1 ATP6V0E2 NEGR1 KCNAB1 GPRC5B ACTB CDK5R1 PTPRS IDS PTCHD4 CALM1 ARL1 C10ORF10 SLC22A17 EIF4A2 NCEH1 SNCB AP2S1 EPDR1 ITFG1 BIRC5 YWHAH RPL13A GRIK3 HAPLN1 FILIP1 YWHAG FBXL16 LMO4 NCDN PFKP MAP1B SEPW1 SOX11 NPTN SYT1 RAB3IP KITLG TLL1 KIF21A TMSB4X RTN3 ALDH5A1 SSTR2 TCEAL3 GNB1 COX6B1 SYNGR3 AZIN1 AURKAIP1 KIFAP3 SLC17A7 TUBA4A LANCL1 ATP5E DNAJB6 CEND1 TOMM7 RPL17 MRPL15 HPRT1 DCLK1 RPL38 EDIL3 FAM131C MRPS36P4 SH3GL2 MAP2K1 RPL13 PHYHIP UQCRC2 MED31 CERS6 KCNC2 GAPDH ATP6V1G1 PLCH1 IDH3A MDH2 PKM CTNNB1 ATP6V1A SLC24A2 PPP2R1A RPS27A CHCHD2 PCDHA9 ZFAND4 GDI1 C11ORF31 KIF5A MAP1A INPP5F HDAC1 USP5 B3GALT2 FGF12 MRPL55 MBP CHRM2 SLC12A5 CTSD COX8A EID1 NGFRAP1 KLHL13 C7ORF50 SERF2 MYO1B SNRPE RTN1 KIF1A DMTN ATP9A CPLX1 CDC37 B3GNT1 TPI1 NDN SUMO2 TIMP2 ATP6AP2 HSP90AB1 RPL35 TKT HMP19 COX7C SCN3B SYT11 MT-ND4L UCHL1 COX6C PLEKHG1 CLU KLHL5 TCEAL2 TMEM35 LHX6 MAPK8IP2 ARPP19 PPP2R2C NKIRAS1 COX5B ARF1 MAP4 SLC7A8 RGS5 REPS2 DNAJA1 CPE C18ORF32 RPS15 RPL17-C18ORF32 NSF RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 ATP1B1 MT-CO3 MT-CO1 YWHAG RAB3B GAD1 MAP1B PSAP GAD2 RTN3 MT-ND4 SARAF HSP90AB1 NGFRAP1 SPARCL1 SYT1 CALM3 GDI1 ELAVL2 NDFIP1 SNAP25 GAPDH NDRG4 ERBB4 SKP1 UQCRH ACTG1 ARL6IP1 TSPYL1 ATP1A3 ATP6V1A KCNC2 ACTB ITM2B FAIM2 MTRNR2L1 PGK1 TAC1 MTRNR2L12 KLC1 APP PGAM1 DNER PNMA2 OXR1 ATP2A2 RAB3A UCHL1 PREPL PRKACB PRNP CLU RTN1 CPLX1 ZFAND5 TIMP2 RAB3C MT-CYB GOT1 CRHBP SLC22A17 HSP90AA1 THY1 VAMP2 MT-ATP6 SLC24A2 SCD5 ATP5B MORF4L2 PKM EIF4A2 STXBP1 PEBP1 ARF5 GPM6A IDS ZNF385D MT-ND1 PPP2CB CALM1 RTN4 SPOCK1 ATP6V0E2 RNF144B TERF2IP STMN3 RPL13 GABRA1 MT-ND3 ARL6IP5 MT-ND2 SYN2 FGF12 STMN2 DNM3 EFR3A NAP1L3 SLC6A1 SEPW1 MTCH1 PCDH17 BEX4 C14ORF2 RGS4 PPP2CA PTMA CKB WBP2 FXYD6 RCAN2 ATP6V0C RP11-20I23.1 ALDOA HPRT1 RPL41 SNCB PHYHIPL PRKAR1A ALDOC RPS2 TUBA1B ATP9A PPP2R1A SCAMP5 NCEH1 SLIT1 CALM2 GUCY1B3 GABRG1 ARL8B PJA2 DCTN1 DNAJC6 PDCD5 GLRA2 YWHAB DPP6 MAP4 CTSD WSB2 LANCL1 INPP5F PGM2L1 GPX4 MARCKS MAPK1 SOD1 TAGLN3 SPOCK2 UBE2N ATP6V1B2 SIRPA SNRPN TMX4 APLP2 SLC6A17 TMSB4X ATP6AP2 SEZ6L2 CEND1 NSF TSC22D1 DPYSL2 NDUFA13 KIF1A FTH1 ISCU SULT4A1 RPL21 MTRNR2L6 SPOCK3 OLFM1 NDUFS5 SLC25A5 FAM134A TRIM37 RPS28 RPL3 BEX2 TENM1 PPIA UQCRC1 NGRN TOMM20 KCNAB1 GPX1 ACTR10 EPS15 PLD3 PPP3CB KCNAB2 YWHAH VSNL1 CHMP5 PLCXD3 COX8A SCN2B CLTB SYT17 TUBB4A CNTN1 COX4I1 DMTN OLA1 SERF2 AP2M1 STRAP DNAJB6 SERINC3 PRKAR1B NAA38 COX7A2L IGSF21 CLSTN1 NMNAT2 SERINC1 CLIP3 PRDX2 SCN1A SLC38A1 CSDE1 RHEB VDAC3 WASF1 STMN1 KIF21A TMA7 SYNGR1 PINK1 FAM3C KIAA1024 PRKCE ITFG1 PLCB1 RHBDD2 OAZ1 UBL5 ELAVL4 EDF1 UQCRB SELT MAGEL2 RNF11 ANXA7 NCALD NDN ERH RND3 TOMM7 PTPRM SLC12A5 UBQLN2 ATP6AP1 ATP5J2 RAB6B LHX6 TUBB2A H2AFZ SLC25A4 CHL1 SYN1 TPI1 COX5B CDH13 WNT16 YWHAZ PARM1 GLRA3 PCDH19 PTGES3 ISCA1 PPP3CA RPL15 HCN1 GRIP2 TPT1 PITHD1 PNMAL1 NPTN REPS2 KRAS ARF3 PAM TCEB2 SNCA CMPK1 TENM3 TUSC2 LDHB PIN1 RAB11A SCOC UBE2M TPPP EIF4G2 CHMP4B SMIM13 FAM127A PNMAL2 TMEM59L C1ORF233 RPS12 TCEAL3 RPS27A KCNF1 NRIP3 NDUFA11 BAALC ARX USMG5 SULF2 TLN2 ANK1 SRP14 COX7C HNRNPH2 TSPYL4 MAP1A DNAJA1 SH3GL2 SLC7A5 TUBA1A MT-ND4L CNR1 CAMK4 ENO2 DKK3 MDH1 OCIAD1 VPS35 MAP2K1 CDK5R2 CERS6 GABARAPL1 EPHB6 AES STXBP6 CORO2B CYFIP2 MLLT11 RELN SYNGR3 CFL1 BSG LUZP2 NDUFB1 FTL CORT MFN2 FAM19A2 OAT HMP19 NAP1L2 PEG10 APLP1 HDLBP CDK5R1 NDUFA5 HAPLN4 TSPAN7 COPS8 ALDH5A1 KLHL12 CDK14 HRASLS5 SCN3B BTBD11 NXPH1 HINT1 BSCL2 CD24 SLC9A1 MAGED1 BASP1 TOLLIP UBC ENSA SNAP91 NDRG3 NDUFA1 ATPAF1 MT3 NREP CHGB PPP2R2B UBE2V2 ARF1 ARL4C PTPRN2 RAB2A PPP2R4 PGRMC1 RANBP1 CNRIP1 SERPINI1 TMEM70 TPRG1L CITED2 CCDC25 PIK3R1 ARPP19 GNAQ CADM2 SELM SRP9 REEP5 BEX1 SAP18 DYNLL2 TRHDE TCEA2 CHCHD2 MRFAP1 MGST3 ADSS UQCR11 CTNND2 PCMT1 NEGR1 SLC32A1 NAPB BAG4 CTBP1 ZNF536 NDFIP2 ATP6V1G1 FBXO2 ARFGAP2 TF ESCO2 MTRNR2L8 BIRC5 AP2B1 ANXA4 NDUFB8 COX7A2 CRTAC1 C1QA NHP2 CAMK2G CRKL MPC2 UQCRQ TPD52 ANXA6 MTG1 VSTM2A VDAC1 CDC42SE2 ATP5J TRPT1 UBE2E3 HSPA8 LMO4 C19ORF70 THOC7 TESPA1 COX6B1 DGUOK RAB3IP NPAS3 MB21D2 PPP1R7 TM6SF1 SH3RF1 TUBB2B B3GNT1 OXCT1 QKI PPARGC1A PACSIN1 DRAP1 PCGF1 SNRNP25 ATXN10 UBA1 MAGED2 GUCY1A3 MAP7D1 PFKP SOX11 RAN ISG15 CD63 SKAP2 SNX3 GNG3 FUNDC1 BCAT1 C16ORF13 DYNLL1 EIF1 PDP1 GNB1 SLC35B1 RAMP1 NRSN2 LDOC1 D4S234E CLTC PFN2 MAPKAPK2 GOLIM4 STX1B CRYAB MAP7D2 RBX1 SEMA5A PRTG MRPS21 ARHGAP24 HMGCS1 CBX6 TCEAL5 SCN1B UHMK1 ZNF804A FAM174A SSBP3 ETV5 MMP24-AS1 C19ORF43 HN1 WBP11 POMP TMTC1 TRMT112 RPS26 MZT2B UBE2D2 CHRM2 WBSCR17 SALL2 CPNE8 NECAB1 NDUFB5 ZNF385A HSPB3 GSTT1 NTN4 GRINA KCNK2 PELI3 SLC39A3 KIF3C EDIL3 COMMD6 NDUFAB1 HDDC2 POLR2M GMFB DNAJB9 MYL12B RPL8 ABRACL BCAS2 SPP1 STK39 GFRA1 SULF1 STUB1 KLHL5 GRIK1 PTPRZ1 INSIG1 EID1 MAP2K2 INA CACNA2D2 CAPNS1 GOT2 RABAC1 AZIN1 VAPB DYNLT3 ARL2BP MMD CCT5 JUND CFL2 DIRAS1 RAB1A C11ORF31 FAM219A ARHGAP6 SPTBN1 UQCRC2 CDHR1 CYCS MTPN RPL12 MAP1LC3A OPA1 PCDH15 GDE1 LMBRD2 NRCAM SMAP2 RRAGA YIPF3 HMGCR CLTA SLC9A6 RPL31 HSPA4 BOC HHATL HRH3 PCSK1N CAMK2D MFSD6 ATP1A1 PAK1 CAMK2N2 FILIP1 RPL6 COX6C PLS3 PPP2R2C VGF RPL38 GRIK3 PAFAH1B2 SNCG ZBTB18 SPRYD3 RAPGEF5 COX7A1 MAPK8IP2 EPB41L3 IQSEC1 VSTM2L RP11-111M22.2 SUMO1 PRDX1 C11ORF96 ATP5E DPY30 VWA5A LCNL1 EGFL7 TMEM35 FABP5 GPR149 CAP2 LL0XNC01-16G2.1 CNP SEMA3C RNF208 PRKCB CREG2 RPL32 GPRC5B TMEM14A NDUFC1 PSMC5 PPAP2B PCP4L1 GABARAPL2 SUMO2 RP11-357G3.2 NDUFV1 DSTN EIF1B PTCHD4 FAM96B SUMO3 ATP2B2 GORASP2 PRUNE2 COPG1 C8ORF4 BAI2 PPM1A SYT4 EIF1AX ALKBH7 PRPH2 SOX6 ELMO1 VAMP1 TBCA C6ORF1 ZBBX TMEM151A SYT3 DNAJC5 PNKD CTNNB1 GHITM RP11-133L19.3 ENO1 ACSS1 TANC1 SEC61G ACLY RPL26 UQCRFS1 ARHGAP35 SNX17 RAP2A KIFAP3 NFE2L1 LPPR4 LMBR1 CHP1 PET100 SERP2 NDRG2 DCTPP1 OSTN AKR1C2 UBA52 WDR47 ARL4D BCAP31 LAGE3 RLIM RASL11B PRELID1 NRGN TMEM65 SNX10 MYEOV2 TMEM130 TCEAL7 TGOLN2 TM2D3 UQCR10 AP3S1 GNG2 CADM3 ALCAM RASSF3 MPPED1 FKBP8 TUBD1 CAPZB NUDT21 GAP43 SLITRK1 ATP5F1 TRPV2 KIAA1211 NXPH2 KIF5A LZTS1 TMEM160 SCG2 MAP2K4 GTF2B HIGD1A OPCML PSMA7 TMEM147 DEXI LIMK1 TSPAN4 KCNAB3 RPL11 DOCK10 FBXW11 NDUFS6 TOX3 LINC00116 RPL7 HGF LYSMD2 CARTPT MZT1 ATP6V1E1 CLPTM1 NDUFA12 AP1S1 PNMA1 ATP6V1G2 GABARAP MBOAT7 MIF TUBB3 AC244489.1 CNTNAP3 CDH8 PCDHA9 PCDHA10 PCDHAC1 PCDHA4 PCDHGA10 PCDHGA6 PCDHGA5 PLEKHD1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 KCNC2 DNAJC21 SPARCL1 SYT1 CFH TBC1D15 GRIP2 ATP1A1 KCNA2 SLC24A2 GDI1 RPL17-C18ORF32 FGF12 RTN4 IDS STMN2 MT-CO1 PREPL TMX4 ENSA KITLG OAZ1 GDA CXXC4 FAM219A LAMP5 RPS3A KLHL5 STK39 ESCO2 CSDE1 FAM3C TSPAN7 RPL15 CNTNAP3 GADD45GIP1 NUP37 PTK2B ASPDH NUDT4 THY1 MRPS21 PPIA CNRIP1 THSD7A NDUFC2 ANKRD18A MPP1 CERS6 MORF4L2 ACLY MAGED1 RP11-111M22.2 UHMK1 RSL24D1 SLC6A17 NRCAM IGF1 EGFL7 DYNLL2 PPP2R1A ASAP1 NAP1L3 PRKACB TIMP2 BTBD10 SNRPN RFK WNT5A GABARAPL2 GAP43 DKK3 CALM2 MAP1A OLFM2 ITM2B C1ORF56 HMGCS1 SCN1A SNAP25 FAIM2 RNF144B ATP6V0E2 SKAP2 OXR1 GNAQ SPTBN1 COQ10B HOMER1 SERINC3 NFE2L1 FAM19A2 NEFL MTX3 PLCB1 DNAJA1 PLCXD3 MTND1P23 MT-ND1 MTRNR2L12 MTRNR2L8 ARF5 NSF HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RGS5 SYTL2 RAB3B ATP1B1 SLC24A2 SNAP25 ERBB4 MT-CYB CAPZA2 ATP1A1 LANCL1 KCNC2 SCN1B RAB3IP ZNF385D ZNF804A RPL18A GAD1 PGK1 MT-CO1 NDUFC2 MTRNR2L1 SPARCL1 PTPRN TUBA1B RP11-111M22.2 ATP6V0E2 CHL1 VAMP2 LUZP2 AP2B1 STXBP1 SERPINI1 ESCO2 TF CORO2B PDP1 NDUFB5 BAG4 MAP7D1 HHATL SEZ6L2 MAP1B MYO16 NUAK1 ADORA1 RTN4 BSG EDF1 IGF1 HAPLN4 TCEAL2 LRP1B SLC6A1 NACC2 KCNAB1 PPP2R2B OAT OPCML ZNF536 BCL11B RAB6B SYT13 PIP4K2A ASAP1 ATP2A2 EXTL2 SLC25A4 QKI PCDHA10 UBE2V2 TOMM70A SLC9A9 NCALD NRCAM MT-ND4 C6ORF1 COPRS YWHAQ ARL6IP5 NFIA SCN1A SEPT4 PDE3A KIFAP3 NAT8L PDGFD SUB1 IQSEC1 OXR1 BCAT1 ZBTB39 CTBP1 ANKRD18A TAC1 GABRA1 GTF2B MYO1B OPA1 NGFRAP1 INA MBP NPAS3 UQCRC2 PEX5L COPG1 CAPNS1 STRAP TXN PTPRS RNF11 DGUOK PJA2 PRNP TSPAN7 CTNNB1 KLC1 GUCY1A3 REEP5 KLHL5 CDS1 RBX1 NDFIP1 ENO1 ELAVL2 CX3CL1 PCDHA4 UTRN DCTN3 ATP2B2 ENO2 CD59 MAF CAMK2G HSP90AB1 MAP2K4 GLIPR1 UCHL1 TUBB2A ARF3 PNMA2 ATP1A3 DPP6 SYTL5 PNMA1 UBE2E3 B3GNT7 CAMK2D SNRPE RELL2 PAM GHITM LGI3 MAP1A ATP5B UQCRB SPP1 FTH1 RAB3A NRIP3 SGCD UQCRC1 FBXL16 ZNF365 CALM3 TPI1 CPLX3 RAB37 SYT1 RPL26 OAZ1 MT-CO3 PRKACB PKM RPS27A TMEM130 MTRNR2L6 CHN1 NTN4 CTNND2 VSNL1 PLCB1 PSMC5 PSAP NDUFB3 GTF2H2C_2 SKP1 PRUNE2 ETFB NAP1L3 TOMM20 MRPL52 INPP5F EPHA6 STK24 DYDC2 BRK1 NOP10 PVALB FAM3C CNTNAP3 RPL13A AC244489.1 RPL21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L1 MT-CO3 MT-CO2 MTRNR2L12 MT-ATP6 MT-ND4 MT-CYB MT-ND1 MT-ND2 MT-ND3 SYT1 RAB3B MTRNR2L6 ZNF385D MTATP6P1 NDRG4 ERBB4 SERPINI1 CALM1 MT-ND5 HSP90AA1 ATP1B1 HNRNPA1P40 SYTL2 RPL17 EPB41L3 SMS SPARCL1 INA NDUFA12 MAPK1 GABRA1 PRDX2 AES GOT1 CNTNAP3 PPM1A TAF7L NEGR1 SEZ6L2 EFR3A NMNAT2 TAC1 TSPYL1 PPIA ATP1A1 GAPDH MT3 KIF21A PPP3CA GDI1 ATP6V0E2 RTN4 RAB3C ATP5G2 FAM43A YWHAB DCLK1 SNAP25 ITFG1 SNCG PVALB MAP1A CTNNB1 RPS15 EIF4A2 TSPYL4 BCL11B PRKACB KLHL5 ACACB APBB1 VDAC1 ASAP1 UROS ANK1 UBQLN2 OAZ1 NPAS3 GAD2 MAPRE2 PGAM1 TM2D3 CAP2 SUMO3 UQCRH KCNAB2 AP1S2 ETFB EIF1AX HIC1 CLIP3 NCEH1 SPOCK1 KIAA1045 MBP RASSF8 ALDH5A1 SOD1 ATP5B PREPL LUZP2 REEP2 TMX4 TCEB2 OXR1 PJA2 C4ORF3 TMSB4XP4 ERH PCSK1N LINC01314 MAF RAB11FIP5 SLC9A9 LRRC39 MAP1B DNAJB6 ATP6AP2 RPL38 OCIAD1 CAMK2G SNX10 TKT PPP1R9B CAMK2D BNIP3 SYT11 TOMM20 CNTN1 BEX4 TPT1 ATP5I NTN4 NDUFA13 CHL1 RTN3 GAD1 RPL14P3 PNMA1 CDK5R1 MORF4L1 ANKEF1 RSL24D1 EFHD2 ARL8A FBXW11 ATP5G3 ROBO2 KIFAP3 POSTN NARS DLD NFIA ARX RP11-664H7.2 GAP43 TMEM258 KCNA2 PLCXD3 NUAK1 TUBA1B SPTBN1 SYNGR1 CPE MTRNR2L8 ELAVL2 RPL11 SNCB TLN2 CMPK1 PINK1 COX7C ALDOC NDUFC2 PRKCE COA3 PPARGC1A COX8A UQCRQ ENO2 PFDN1 COX14 MAFB CLTA CHGB TUBB3 PCDHA4 PTCHD4 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 MT-CO2 MT-ATP6 MT-ND3 MT-ND1 MTRNR2L12 MT-CYB THSD7A SNAP25 MTRNR2L1 MT-ND2 ATP1B1 TBC1D15 ZNF385D DNER SCN1A MTRNR2L8 SYT1 ARL4C ATP2A2 GABARAPL1 HSP90AB1 OLFM1 PRNP ANK1 SYNJ1 SLC25A6 PLCXD3 TGOLN2 COX17 PTCHD4 ATP2B2 GPR158 TERF2IP PCDHA10 LMO4 CALM2 SEZ6L2 SPARCL1 PPP3CB MT3 KCNC3 CPLX1 NDUFB7 CALM1 PET100 UTRN ALDOC BSCL2 CA8 YWHAB MARCKS NGFRAP1 CHEK1 DNM3 FBXL16 SERINC3 SLC6A1 SNX10 SUMO1 ADAM23 UBQLN2 MAP1A DPY19L1 FAM131C CLDND2 ITM2B STMN2 NRIP3 CALM3 RPS3A MTRNR2L6 TM2D3 NEFM ARX OAT YWHAZ MORF4L1 RPL15 DNAJB6 IQSEC1 SUCLA2 RP11-656G20.1 EIF1 KCNMB4 RASGRF1 NHP2L1 EPB41L3 ASNA1 DYNLT3 RTN3 EIF4A2 CNR1 NEGR1 PLEKHH2 TKT SEZ6 RBX1 CD59 VAPB GFRA1 STMN4 APP PRKCG EPS15 MAGEL2 RAB6B HSPE1 PTHLH PCGF1 NEFH INSIG1 AES PMEPA1 SNRPN CCDC85B SIRPA CERS6 GABARAPL2 VAMP2 BCAP31 FKBP8 GDI1 HK1 MAP1B DYNLL1 PTK2B NACC2 ARL6IP1 DKK3 PNMA2 RP11-664H7.2 SOX4 MAGED2 LRRC39 C18ORF32 PARM1 KCNC2 MAP2K2 RAB3IP GSG1L NBL1 CX3CL1 TSPYL4 HIGD1A GAD1 ARL8A NDUFV1 KIF21A PVRL1 PAM ELAVL2 EIF1AX GPM6A CALN1 KLC1 MAP4 WASL FUNDC1 NDUFA11 CEND1 RPL26 LHX6 TPI1 ADSS WBSCR17 BTBD11 RPL35 MORF4L2 HTRA1 NDUFC2 TLN2 ARF1 CSDE1 FTL GABRA1 FAM19A2 RPS28 VPS35 GPX4 RPS27A SYT11 PKM TMEM120A MT-ND5 ADIRF PPP3R1 ASAP1 KIF3C TUBB2A SLC24A2 ZNF385A MTPN PTGS2 PDE1C KRAS OCIAD1 UBE2QL1 BAG4 CCDC184 ISCA1 SLC38A1 NREP MTATP6P1 CLSTN1 CAMK2N2 CYCS NAPB RAP2A ACTR6 CETN2 NDRG2 THY1 CADM2 FBXO2 SYT5 SCN2B SYTL2 RAB3B CFH IDS PVALB ALDOA RPL13A ATP1A3 MIF DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ND4 MT-CO3 MT-ND3 MT-CO1 MT-ATP6 ATP1B1 SYT1 MT-ND2 PRKACB FTH1 RPS15 MT-ND1 RAB3B GAD1 DYNLL1 MTATP6P1 TUBB2A SPARCL1 MTCH1 RPL11 MT-CYB COX4I1 THSD7A UQCRH MT-ND4L RPL15 GAD2 FAIM2 RPL31 RPL38 RPL32 RPL3 EIF4A2 GAPDH RPS27A OXR1 WASL ERBB4 NDUFS5 GPM6A RPL17 RPL39 PTCHD4 RPL41 PKM COX6A1 SNAP25 UQCRB SSTR2 NEFL RTN4 GHITM BEX1 CALM2 UBE2V2 STMN2 NDUFC2 FXYD6 ZFAND5 PPP3CA COX7C TSPAN7 ELAVL2 RGS4 NUDT4 SLC1A2 ATP6AP2 EID1 NEGR1 PTMA LDHB BCAT1 ATP1A3 NDUFC1 RPL21 GLUL RPL6 SLC17A7 ATP2A2 PFN2 ELAVL4 PRKAR1B TCEAL2 RAB3C HSP90AB1 IDS ITM2B DNM3 TENM1 YWHAZ RAB6B ZBTB18 PPP2R2B SRP9 RPL10A YWHAG SCAMP5 COX6C RPL37A HOMER1 OLA1 GTF3A NDUFA12 MT-ND5 SLC24A2 RTN3 BTBD11 IGF1 TMSB10 THYN1 RND3 KLC1 MORF4L1 ATP5I ATP5G2 SYNGR1 YWHAH PSAP TMX4 GABRA1 NGFRAP1 ZNF385D RPL13 SLC9A6 BEX5 RAB4A SLC12A5 NDUFB10 DCTN1 PFDN1 FKBP4 TENM3 APP ISCA1 ATP6V1F LMBRD2 MAPRE2 SNRPN SERPINI1 NDUFA11 C1ORF115 NARS HS6ST3 NDUFA5 CAMK2N2 PEBP1 NHP2 CNTNAP3 NRF1 HCN1 COMMD6 SERINC3 INPP5F MTRNR2L1 MRPS28 CLPTM1 CLIP3 PHYHIP FIS1 RPL35 TMSB4X UQCR11 FAM127A PCP4L1 MYO16 RPS26 PLOD2 WDR47 MAP2K4 PNMAL2 NXPH1 TPT1 NAP1L2 MAGED1 STMN4 TERF2IP EPHB6 PHLDB2 EFR3A BRK1 CLSTN1 TPI1 MYL6 NCEH1 ATRN YAF2 VSNL1 LAMTOR5 PNMA2 SDCBP CTBP1 CHGB SSPN CCDC25 RPS4X HIGD1A DLX1 MLLT11 CD59 RPL18A PVRL1 CALM3 VDAC1 ATP6V1C1 SDHAF1 ATPAF1 TSPYL1 PLCXD2 SOX6 GOLIM4 POLR2M GUCY1B3 HDDC2 PPIA OCIAD1 FAM134A HDLBP RHEB NDRG3 CADM2 SUB1 TAC1 TMA7 PPARGC1A ENO2 AES PCDH19 CFL1 LINC00116 COX6B1 DKK3 BLOC1S1 CCDC115 STMN1 RTN1 AP2B1 TUBA1B PHF11 MAPK1 CTNND2 CST3 AURKAIP1 NDUFB8 SNX17 SAP18 ATP5J CNR1 ROBO3 LDB2 IDI1 KCNK2 POSTN SRP14 RPL35P6 GDI1 KIF1A CTNNB1 TM2D3 SNX3 GDE1 ZNF365 PIN1 YJEFN3 NAT8L KCNAB1 SMYD1 TOMM7 FXYD7 ARL6IP5 NDUFV1 MTUS1 MTRNR2L12 PEG10 MDH2 MZT2B PTPRN2 PSMA7 PRNP GRM8 PDP1 ATP5E DPYSL2 SMIM13 TUBA4A RAB11A GABRG1 PNMAL1 PCSK1N APLP2 HRK ATP1A1 NDUFA2 CYCS UCHL1 RGS5 RSL24D1 CLTC RASGRF2 LPPR4 OPA1 VAMP2 DYNLL2 WIF1 PSD3 PREPL ACTB SOD1 BSCL2 RASGRF1 TLN2 CISD1 STXBP1 STMN3 KCNC2 ATP5F1 RPS6 MRPL11 HCN2 FBXL15 TMEM11 TMEM14A MAP1LC3A RAN PGRMC1 MBOAT7 TMEM191A NAP1L3 PPP1CB WSB2 YWHAQ PAQR9 NUDT21 ATP5G1 MAF SYT3 PRDM1 GNB1 GNAQ GPR158 SYN2 PRDX3 CREG2 SLC22A17 ENO1 ARL4D TOMM20 SNAP91 NDUFB11 PLCH1 HMP19 D4S234E RHOA PRRX1 SLC6A1 KIF21A MMP24-AS1 CAMK4 DDN RPS2 CRYM RNF11 ENOPH1 LYSMD2 SLC38A1 SYT11 POLR2L MTRNR2L8 RAMP1 SARAF SPP1 PPP2R1A REEP2 KCNMB4 MAP7D2 MTND2P28 ATOX1 UBC EIF1 B3GALT2 EIF4G2 RPL7 MZT1 PRKAR1A BSN SNCG GPX4 TUBB4A MTG1 SCN1A RAB7A ALDOA ARF5 NSF PGAM1 MTRNR2L6 C11ORF31 RP11-219A15.1 AC244489.1 MIF RPL36A PCDHAC1 PCDHA4 PCDHA9 PCDHA10 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ERBB4 MT-CO1 SPARCL1 MT-CO2 ATP1B1 ZNF385D MT-ND4 SYT1 MT-CO3 RAB3B MT-CYB UQCRB SNAP25 COX7A2 PTPRS PARM1 MT-ND2 GPM6A SELM RTN1 HSP90AB1 COX6C PEBP1 REEP5 CLSTN1 MTRNR2L1 HSP90AA1 SLC25A4 CPLX1 MORF4L1 DYNLL2 OCIAD1 FAM19A2 GSG1L RPL7 DPYSL2 DNAJC5 EIF4A2 ATP6AP2 IDS GOT1 NRSN2 MT-ND3 NDUFC2 CDK5R1 MT-ND4L SLC6A1 ARF3 SCN1A CALM1 RAN CSDE1 CLU RASSF3 UBC DKK3 NDRG4 SYN1 TPI1 BAD THY1 HOMER3 ALKBH7 HMGCS1 MDH1 SPOCK1 UQCR10 AES OXCT1 TCEAL7 NHP2L1 UCHL1 YWHAZ KLHL5 RHBDD2 CHGB ATP2A2 OXR1 AURKAIP1 STMN1 SDCBP ANAPC11 SYT13 IQCK GLIPR1 HPCA PKM YWHAQ PPP2CB EIF1AX DMTN SEZ6L DYNLRB1 PPP3R1 NCALD HRH3 SNCB COPS8 FTH1 PRKCE CNTNAP3 PNMAL1 MLLT11 MAP7D2 ACTG1 CTSD RPL12 DSTN NAP1L2 SLC7A8 OSTN CLIP2 PSAP NPAS3 EDIL3 TCEB2 LMO4 TUBA1B SERINC1 PIP4K2A PREPL PODXL RHOB UQCRH MAF RAB3A INA RPS5 RPL10A ATP6V0E2 ATP6V1B2 NGRN CA4 SLC38A1 TMEM130 NGFRAP1 COL15A1 HMP19 NPNT GUK1 CNR1 ATP1A1 ENO2 RPL38 FGF12 MTATP6P1 PSMC5 ATP6AP1 MAP1B MRPL37 QKI CALM2 PPIA PRKAR1B LDOC1 GMFB RPL37A DUSP1 PRKAR1A CLTC SUMO1 TMX4 CADM2 CLIP3 EDF1 BAG4 TOX EFR3A FTL TMEM151A TAC1 COX6A1 PPP2R1A UBE2E3 GABRA1 NSF ARL4C LSM4 USP5 SIRPA COX4I1 SLC39A10 ARF5 RPS3A LPPR4 CTBP1 SULF2 PHLDB2 PTGDS GABARAPL2 JAKMIP1 APLP2 TPT1 CALM3 MORN2 PPP3CA DLL3 AP1S1 SNX3 ATP6V1A KIF1A ARL6IP5 TUBB2B SCG2 MORF4L2 GAP43 RAB6A SERPINI1 IFI6 PINK1 RPL23A COL12A1 TBCB SH3GL2 REPS2 SCAMP5 FNDC4 ATP5B NELL2 HEG1 DNAJB6 HILPDA PLCB1 KRAS CRH CTNNB1 CA8 SLC35B1 TERF2IP MAP7D1 STXBP1 ATP1A3 CYCS IDH3A SEPT4 NDUFA1 RUNX2 NCBP2-AS2 CNTN6 NACC2 ATP1B2 RPL26 PDCD5 NDUFC1 MAP2K4 TLN2 STMN4 RPL15 PRKACB UBB TSPAN7 CCK RHEB ANXA6 STXBP6 CREB5 MT-ATP6 ENC1 KIFAP3 SEZ6 COX8A HCN1 ALCAM CKB PTHLH PJA2 RNASEK-C17ORF49 POLR2J RTN4 MRPS7 RPL11 RPL18A HAPLN4 GNAQ PNMA2 PTPRT RPL39 NDFIP1 PTMA VSNL1 NFE2L1 UTRN KCNC2 PPM1A TMSB4X NUDT21 RPL17 RPL13A RP11-20I23.1 MTRNR2L6 RPL17-C18ORF32 ATP6V0C PSMB3 PVALB LMBR1 RPL36A SYTL2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-CO1 SNAP25 MT-ND4 ATP1B1 MTRNR2L1 MT-ND3 NDRG4 SYT1 MT-CYB MT-ND1 GAD1 MT-ND2 KCNC2 MTRNR2L6 ITM2B MTRNR2L12 SLC6A1 GPM6A ERBB4 PNMA2 RAB3B ZNF385D DNAJC21 RGS4 CALM2 GDI1 RELN GABRA1 SERINC1 APLP2 DNER RAB3C TSPYL1 SERPINI1 MT-ATP6 KLC1 ATP6V1A PTMA CXCL14 SCG2 PHYHIPL ACTB CHL1 NAP1L3 RTN4 STMN1 HSP90AB1 VAMP2 PRKACB SLC38A1 NGFRAP1 CHN1 THY1 TCEAL2 GAPDH HCN1 SPARCL1 GAD2 PTPRZ1 NAP1L5 SNRPN NPTXR MTATP6P1 MAP1B EIF4A2 RNF11 ATP5B UQCRH RPH3A YWHAZ PROX1 RTN1 ACTG1 CYFIP2 ENO2 RP11-111M22.2 KIF1A GOT1 ATP6V0E2 PLD3 TMEM130 SPOCK3 ARL6IP1 PRNP MORF4L1 SLC24A2 PTCHD4 IDS CAB39 FAM19A2 FAIM2 SPOCK1 FAM219A PNMAL2 TUBA1B UBE2N CALN1 SKAP2 ANXA7 SULF1 BAG4 COPG1 CNTN1 ARPC5L NPTN LBH MPPED1 CX3CL1 LINC00087 PPIF OAZ1 UBB NDUFC2 TUBB2B RTN3 CDC42SE2 SCD5 UBA1 RLIM AP1S2 ITFG1 SLC9A6 AK5 ZNF536 PCSK1N KIT SRP9 SNCB ARPP19 GABARAPL2 BCL11B PRKCB CRIM1 MTRNR2L8 PREPL PKM DPYSL2 PIP5K1B YWHAG CEND1 SKP1 EFR3A PTPRN RPL37A CALM1 PPP1CB TANC1 RAB11A MAPRE3 RAB6B CADM2 RGS12 ALDOC CLTC PPP2CA ARL8B ATP1A1 RPS15 TMTC1 JUND PJA2 PTPRM LANCL1 VDAC3 CYC1 UBE2QL1 FAM3C RND3 ATP1A3 YWHAB GHITM PACSIN1 MAPK1 NRSN2 BASP1 WBSCR17 GRIN1 GPR158 CHGB RPL15 RAP2A YWHAH NSF TPD52 COL21A1 LINC01314 SNAP91 ATP6V1C1 LRP1B PPP3CB CRKL TMEM200C STRAP PSMD12 WLS NDUFB8 KCNC3 CAMK2G PCDHA4 VEGFA SCN2B TRPC3 SRP14 RAB7A ATRN SOX11 CHP1 SV2C SEZ6L2 NUAK1 PTPRS NDUFA2 CDK5 DCC ABHD14A SLIT1 RAD23B AP1S1 PGM2L1 GLRA2 MRPS21 NDUFB5 PRKCE FKBP1B SYNJ1 DOCK10 RHBDD2 SYT4 GUCY1A3 STK39 TMEM132C CLSTN1 YJEFN3 RBX1 BLOC1S1 CPNE8 GSKIP WARS VPS35 SUMO2 SCOC NDUFB11 CFH SERPINE2 RGS5 CLPTM1 TCEA2 MTPN FTL TPGS2 NDFIP2 NDUFS5 NEFL PHYHIP SYN1 MORF4L2 ARF5 CRYAB TMEM144 RAP1GAP2 TM6SF1 JAKMIP1 NXPH2 STXBP6 TMEM35 VSNL1 NFE2L1 DPY30 TUBB2A PTPRN2 DPP6 SEPW1 CCDC124 DYNLL2 RPS5 ARF1 CLTA ELAVL2 RHOB STXBP1 ADAM33 JOSD2 BCL6 NAP1L2 SCN1B ELAVL4 NDRG3 SLC7A8 DDAH1 NRCAM PCDHB4 RPL38 HIGD1A HCN2 MAGED1 ATP9A MAGEH1 STX1B TSC22D1 CAMKK2 DYNLT3 TMEM70 CKB CDK17 ARL6IP5 YWHAQ NDUFB2 TMSB4X RRS1 SMIM13 CPLX1 COX5A VSTM2L DSTN SMS NCALD BANF1 MAST3 ATG9B USP5 LPPR4 RPS12 ANAPC11 VDAC2 ASIC4 FGF12 HNRNPH2 NDFIP1 ZBTB18 TAC1 RPS28 SNX10 VDAC1 POLR3H RRM2B C19ORF43 EIF1AX EPDR1 CCDC85B CMPK1 C11ORF31 KCNAB1 SYNGR3 PPM1A CLU ANKRD34B MRAS NAPB KRAS ATP6AP1 NUDT21 BEX2 KLHDC3 EIF4G2 C16ORF93 KIF21A HMGCS1 WIF1 CAMK2N2 TCEAL3 C8ORF4 PRKAR1A SPOCK2 PPARGC1A ATP5E DNAJC6 RPL41 GOT2 PSMA7 PPP2CB PAM WSB2 KIFAP3 ALCAM AP2B1 ATP6AP2 EDIL3 RFK GSK3A TM2D3 INPP5F ATP6V1F OCIAD1 PEBP1 ENO1 CTBP1 SNCG VAMP1 FKBP1A BAI2 OAT PPP3CA CDS1 SRM RAN FAM174A HK1 SYT17 SYNPO MT-ND4L BEX1 EIF1B CHRM2 EDF1 ARX BAALC TUBB4A DNM3 SCN1A ISCA1 SNCA ATP5F1 SCAMP5 DKK3 FIGN SNN ARL8A DNAJC4 FXYD6 C16ORF13 CAP2 DLL3 SLC10A4 OLFM1 BIRC5 REEP5 PDE1C ATP2B2 TRIM37 ARF3 ATP6V1B2 DUSP6 AES CDK5R1 RELL2 LINC00086 ABHD8 EEF1A2 CITED2 CDKN1A CAMK4 CCDC169 CLDND1 ARHGAP35 TIMP2 TKT LMBRD2 DCTN1 SLC22A17 HSPBP1 UQCRB SLC6A17 DYNC1I1 TOMM20 ATP6V1G1 CRTAC1 WDR47 S100A6 KLHL5 DUSP4 SH3BGRL3 ATP2A2 HSP90AA1 NREP PSAP KCNK2 OXCT1 MGST3 LIN9 MYBL1 ERH APLP1 EIF1 ROBO2 SUB1 PAFAH1B2 APP ATP5G3 PRDX3 RCAN3 ATP6V1G2 RPL17-C18ORF32 C18ORF32 RPL13 PPIA ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B ATP1B1 SNAP25 MT-CO2 MT-CO3 MT-ND2 SYT1 MTRNR2L12 CALM3 MT-ND4 PAM MAP1B SERPINI1 VAMP2 ATP1A1 SARAF NDRG4 MT-CYB GPM6A OCIAD1 PREPL SYNPR CAMK2D RP11-111M22.2 MT-ND1 PRNP BASP1 SPOCK3 PCP4L1 MAGED1 CHN1 SUCLA2 ALCAM RAB3IP PLCB1 SLC22A17 CDH13 RAPGEF5 RPL21 RPL39 ARX PNMA2 MT-ATP6 DCLK1 ACTB SERINC3 GAD2 PTPRN COL25A1 PTPRS SNAP91 ATP6V1G1 ATP6AP2 MAP1A RPL7 PPP2R1A SPCS2 LMBRD2 NPTXR PGRMC1 SERINC1 SST KLC1 HSP90AB1 NXPH1 DNAJA1 EIF4A2 TBC1D15 IDS CAMK4 SCD5 ARHGAP35 MTRNR2L1 GNG2 MAPK8IP2 ATP5E PAQR8 TUBA1A TMOD2 PTCHD4 NHP2L1 CSDE1 SMS MAP2K4 CPE SNRPN CADM2 PJA2 COX4I1 ATP1A3 MRPL11 FGF12 RTN1 BCAS2 PKM DPP6 MAP2K2 STMN4 EID1 C14ORF2 MTATP6P1 NDUFC2 TOMM20 VAMP1 RHEB HSP90AA1 SOX2 FOXP2 TUBA1B TLN2 NDRG3 SLC25A5 TBCB CREG2 FAM3C GRIN1 GPX4 HPRT1 RAB6B CLIP3 SUMO1 ROBO2 TSPAN7 UBC CCDC85B EPHA6 TANC1 ARL8B TMX4 TSPYL4 PPP2R2B GDE1 PBXIP1 LAMA4 CNTN1 STXBP1 GRIP2 ATP6V1C1 CD99L2 RPS15 COX6C DIRAS1 ISCA1 ATP1A2 RPL13 NDUFAF3 USP5 RPS26 UQCRB BCL6 SLC25A4 LINGO1 LRRIQ1 PET100 SLC30A3 PRKAR1B COPS8 DSTN PTGDS WLS SULT4A1 AK5 TRAPPC1 POLR2M YAF2 UQCRC2 DYNLL1 STUB1 GPRC5B PPP2CB TIMP2 BEX2 VSTM2L SLC24A2 PI4KA APLP1 INA STXBP6 BSN RPL8 RCAN2 TPT1 RPL38 PNMA1 FXYD6 B3GALT2 CACNA2D2 GOT2 CLU MORF4L1 CAPZA2 TPPP ENO1 PRDX5 CDH8 CDK5R1 ATP6V1A SCN3B DDN MAP4 MRPL33 HMP19 TBCA NXPH2 PSD3 ENO2 ANK1 C4ORF3 GNAQ RTN4 LDOC1 MARCKS DPYSL2 APP YWHAZ NDFIP1 MT-ND3 GAPDH RPL31 PCDH19 MTRNR2L8 MAP7D2 CLSTN1 SPARCL1 DHCR24 KIF1A SPOCK1 C16ORF13 MTRNR2L6 RP11-20I23.1 RPL13A GABARAP ATP6V0C GTF2H2C_2 TSPYL1 HNRNPA1P40 RPL17 RPL17-C18ORF32 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 MT-CO3 MT-CO2 MTRNR2L12 MTRNR2L6 SYT1 MT-ND4 NEGR1 MT-ND3 MT-ATP6 MT-ND1 MT-ND2 MT-CYB ZNF385D EIF4A2 ATP1B1 TUBA1B PLCB1 HNRNPA1P40 CFH DNAJC21 TBC1D15 CNTN1 CYFIP2 CLIP3 LSM4 ZNF536 SNRPN APLP2 RPL35 LANCL1 SYN2 RAB4A AES RGS5 ACTB SPOCK3 VDAC3 SNAP25 ERBB4 PRNP YWHAZ RAB3C CDS1 VWC2L BTBD11 TMEM132C CALM3 ACOT7 VAMP2 REEP2 NHP2L1 KIF1A RTN3 PTCHD4 BASP1 AZIN1 CCND1 DNM3 HSPB8 PNMA2 CMAS DPYSL2 GRIN2A IDS BIRC5 NGFRAP1 LRP1B NCAM2 BCAT1 MAP1B HTR2A SYTL5 STK24 SLC7A8 EPS15 RASSF8 MAPK1 PVRL2 AKAP12 EPHA6 SCAMP5 SLC25A6 NPTX1 UBA52 TMOD2 ANXA7 SLC9A6 SLC24A2 RASGRF2 MT-ND5 BEX1 PCDH19 YJEFN3 PPP2R2C PCDHGA6 KCNC2 TMSB10 NR1I3 NPAS3 RP11-20I23.1 RPS28 ATP6V0C PGRMC1 YWHAB GMFB DCN EDF1 PTPRN2 RTN1 PNMAL1 SLC12A5 CALM1 TRPT1 RTN4 CLMN TSC22D1 SYNJ1 NAPB LINC01314 MDH1 PRKACB ALDOA PCDHB10 TUBB3 PSMB3 AC244489.1 NGRN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L12 MT-CO3 MTRNR2L1 MT-ND2 MT-ATP6 MT-ND4 MTRNR2L8 MT-CO2 MT-CYB SNAP25 ATP1B1 MYBPC1 RAB3B ATP5J2 PTCHD4 SYTL2 MT-ND3 PET100 HOMER1 TSPYL1 MTCH1 HILPDA CCDC25 PEBP1 RAB3A NUDT21 OXR1 ABHD14A MRPS7 SLC1A2 HMGCS1 RPS15 RHEB KIF21A SYT1 CALM1 TMEM130 GAPDH MTRNR2L6 PTPRZ1 TXNIP SOX6 EIF4A2 DOCK10 MAP1B TOLLIP MIR6723 KCNC2 RGS12 NFIA CKS2 MTUS1 MT-ND1 CHL1 CLSTN1 HCN1 FKBP8 SYNJ1 SLIT1 SLC22A17 H2AFZ SRP9 STMN1 BAALC PPP3CB RPL13A BSCL2 IDS HNRNPA1P40 ATP6V1G2 AC244489.1 CFH TBC1D15 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MTRNR2L1 MT-CO1 MT-CO2 MT-ND2 MTRNR2L12 SNAP25 SPARCL1 RTN4 SYT1 MT-CYB MTRNR2L6 CNTNAP3 ATP1A1 ATP1B1 NDRG4 MT-ND4 TBC1D15 NRCAM CDC37 C11ORF31 GABRA1 MT-ND1 PTPRS ZNF385D GRIN2A RAB3B LPPR4 MTRNR2L8 COL11A1 PJA2 ERBB4 CFL2 TLN2 EIF1AX OPCML PFKP ATP6AP2 ANK1 CDK14 TENM1 SOX6 SCD5 NDUFS6 QDPR RHEB PPP2R2B NDFIP1 CX3CL1 MAP1LC3A MAGED1 SCN1A SLC6A17 ATP1A3 C7ORF50 GNAQ SLC24A3 DUSP4 WASF1 RPL39 PKM MT-ATP6 RAD23B TERF2IP DKK3 HSP90AA1 MAP7D1 HSPA8 ANAPC11 COBLL1 MTATP6P1 COX5B RPS15 COX7C POLR2K RPS4X TOMM20 CADM2 KCNC2 NHP2L1 NIPA1 DNM3 SCN1B SPOCK2 ASAP1 RAB3IP RUNX2 SYNJ1 MAP1B OXR1 CALM2 ENO2 SUSD4 GUCY1B3 MORF4L2 GAD1 REEP2 THSD7A PDP1 TMTC1 ATP6V1F BCL11B ATP5B TOX2 RPL37A NPNT SNRPN ADAMTS17 CCK CALM1 PTCHD4 LDHB VAMP2 EFR3A SYNGR1 PCP4L1 YWHAZ SLC24A2 ADAMTS5 SYT4 MT-ND3 RCAN3 CPLX1 IL15RA TSPYL5 SEZ6L NCEH1 SLC12A5 GAPDH B3GNT1 PPA1 PPIA PLOD2 DNER RPL38 TGOLN2 GMFB CAMK2G CABP1 LANCL1 LGI3 VPS35 UQCRH CLIP3 IDS MAP1A PLD3 CLTC BASP1 PPP1CB SERINC3 RP11-20I23.1 HBA2 ATP6V0C KLC1 HBA1 ESCO2 HNRNPA1P40 BCKDHB TF CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 SNAP25 MT-CO2 MT-CO3 MTRNR2L1 SYT1 MT-ATP6 SYTL2 ZNF385D ATP1B1 MT-CO1 EDF1 MT-ND3 RTN3 SCN1A EIF4A2 MTATP6P1 OAT CALM1 SLC6A1 COX7C OXR1 TMEM155 ATP6V1E1 PLD3 PSMD8 SNCB PREPL ENO2 PPP3CA VEGFA TMA7 PRDX1 NUDT21 EIF1 LANCL1 GAPDH THSD7A STXBP1 SNCG SPARCL1 ZFAND5 FAM3C ATP1A1 SLC12A5 MT-CYB AP2B1 NDUFB2 PRNP CACNG3 NRCAM CALM3 NGRN HCN1 PPP2R1A RTN1 PRKAR1A RGS4 ACP1 TOMM20 APP MTRNR2L6 C19ORF43 GABRA1 HSP90AB1 FKBP4 SIRPA NDUFA5 ISCU MAP1A C8ORF4 PGAM1 NDRG4 MORF4L1 SLIT1 SSBP3 PTCHD4 FAM131B ATP2A2 FLOT2 TENM3 KLHL5 BCL11B MAP1B TXN PFN2 EIF4G2 PCDHGA5 MT-ND2 MT-ND4L PPP3CB SULF2 MGST3 ENC1 SOX6 CTBP1 STMN3 PCSK1N RNF208 USMG5 CHGB GPX4 PPP2R2B KCNS3 MT3 CX3CL1 TMEM132C PVALB PKM CKB CYFIP2 ATP9A STMN1 LGI2 RPS4X DYNLL1 TSPYL1 NPPC NMBR RAB6A PAFAH1B2 RPL37A MAP2K4 NCOA4 POSTN TMEM59L LHFPL3 CLU SLC25A6 KAL1 SLC9A9 SARAF RAB7A MED10 CAMK2N2 TMOD2 ARL8A MAP4 SPHKAP SPOCK2 TMSB4X ERBB4 HPRT1 CPLX2 NDFIP1 GAD1 ATP5J ABRACL UQCRH NDUFA4 MAPRE3 NDUFA11 NFIA TMEM35 BNIP3 HSPBP1 HSP90AA1 CHN1 MFSD6 GUCY1B3 RFK SYT5 VSNL1 CCK PTPRN VDAC3 RPL26 RPL18A PHYHIP SMIM13 DNAJB6 YWHAG C14ORF2 UCHL1 GDI1 TBCA SUMO3 RPL15 RHOB TCEAL5 IDS BSG ATP6V1G1 GADD45GIP1 YJEFN3 SNRNP25 APBB1 NPTN ACTG1 KIF21A MAP7D1 ATP6V0E2 RAB3C COX6C ATP6V1A TMEM191A ECM1 TGOLN2 NXPH2 UBA52 MDH1 WASL CPLX1 KIF3C FRZB PCYT2 RAP1GDS1 TMEM230 RAPGEF5 CFL1 ZBTB18 DSTN BTBD11 ARL6IP1 C4ORF3 RTN4 UBQLN2 BSN DLD NXPH1 CALM2 HK1 NGFRAP1 CHCHD2 SLC24A2 ATP5I PHYHIPL PCDH19 KCNAB3 RPS28 BSCL2 RPL3 GABARAP MIF AC244489.1 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO3 MT-CO1 MT-ND4 MT-ATP6 MT-CO2 MT-CYB MT-ND2 MTRNR2L12 ZNF385D SNAP25 CNTNAP3 MTRNR2L6 SPARCL1 RTN4 MT-ND3 ENO2 CLU SYT1 GOT1 HNRNPA1P40 MAP1B RRM2B MAPRE2 HGF MTUS1 NUAK1 PTPRS GAD1 HK1 TENM3 PCDHA4 ANXA7 PTCHD4 MT-ND4L MANBAL SPTBN1 RELN CTNNB1 KLHDC3 ECM1 MT-ND1 RAB4A FAM149A TKT RUNX2 CCDC85B DPYSL2 MDH1 ATP6V1E2 RPL13 MAF ABCA8 ATP5G2 DCTN1 MTRNR2L8 CALM3 RABAC1 SLC7A1 PGM2L1 BEX1 GTF3A DLX1 TIMP2 ALCAM GABRA1 PREPL MT-ND5 MTATP6P1 FAM134A RAB3B SYTL2 RP11-219A15.1 IDS C20ORF24 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLTC ELAVL2 ARL6IP1 REEP5 KCNC2 MTRNR2L1 MT-CO2 KIF21A RTN4 SNAP25 ZNF385D SYTL2 SMS CISD1 DNAJA1 MT-CO1 VAPB MAF SYT1 GNB1 NAP1L2 MT-ND2 NKIRAS1 MMD COL12A1 PGD GRIP2 MT-ND4L IQCH ADSS VPS35 RPS3A NUDT21 CAMK4 DCLK1 CAMK2D ELAVL4 RAB5C KRAS SOX6 CLEC2L SCN1A GMFB MYEOV2 GNAQ STMN2 RND3 RAB11A LPPR4 ATP1B1 KCNAB1 ATP6V1A KLC1 ARHGDIA TAC1 PNMAL2 KLHL5 OLA1 NGFRAP1 VSTM2A ACTG1 EIF4A2 EIF1B YJEFN3 RP11-111M22.2 PNMA2 CLU RNF11 AKAP12 PTCHD4 ARL6IP5 KCNA1 COX7C ANXA7 YBEY KIF1A NDFIP1 MT-CO3 CHGB PEX5L COX7A2L MYO1B FBXO2 PLCXD2 ATP6V1B2 HHATL SCN1B CADM3 ENSA MTRNR2L12 FLT1 OXR1 ERBB4 IDS NGRN MTRNR2L6 RPL6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND3 MT-CO2 MT-CO1 MT-ATP6 MT-CYB MT-ND4 MT-ND2 MT-ND1 MAF MTRNR2L12 MTRNR2L1 TMSB4X SYT1 SLC6A1 ATP1B1 PRKAR1B GRIN2A MT-ND5 RP11-219A15.1 GPM6A BIRC5 HSP90AA1 MTRNR2L8 MTRNR2L6 MTATP6P1 CAMK4 ATP6V1C1 MPPED1 ZBTB39 FAIM2 SCOC ITFG1 RPL31 ALDH5A1 PCDH19 VDAC3 BEX4 ATG9B INPP5F PRNP APLP1 BEX1 LAMP5 SYNGR3 PHYHIP DYNC1I1 TSC22D1 NDUFB4 NTN4 ARL8B UQCRB EPHA6 CBX6 NPPC ETS2 OSGEPL1 SPOCK1 PPP2R2C C2ORF47 PTPRT PLAUR CFL1 MDH1 LIN7B CPLX1 PLCB1 TOLLIP WLS CALM1 PREPL KLC2 CALM2 PDGFD GOT1 NRIP3 COX7C PLD5 MAP1B PPP3CA LGI3 RPL37A RASL11B EFHD2 ROBO2 TCEAL2 CD24 SV2C SNAP91 RPS28 SYN2 PCSK1N PEBP1 GAD1 ARL6IP5 RAB6A MAPRE2 DYNLL1 MAP1LC3B IDS RPL18A SERF2 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 PLP1 MT-CO2 MT-ATP6 TF MT-ND1 MT-ND3 MT-ND4 ZNF385D MTRNR2L1 SYTL2 MTRNR2L12 FTH1 ATP1B1 MT-ND2 MT-CO1 MT-CYB SLC24A2 SPARCL1 GOLIM4 APP MTATP6P1 PLCXD3 MTRNR2L8 RTN4 RBP7 ST18 ARPC4 KLC1 CREB5 EIF4A2 GAPDH TMOD2 GABRA1 PTMA ARL6IP1 SUMO2 TLE4 PACSIN1 YWHAG NAP1L3 CALM1 MGST3 DPYSL2 CLDN11 CNP SCOC COL9A2 SULT4A1 COX7C CDK5R1 MEPE PEBP1 ELAVL2 TBC1D15 MTRNR2L6 SNAP25 ARFGAP2 CALM3 RPL15 MRFAP1 UBE2V2 CPE BEX1 APOD TPT1 SOX4 COX5B INA SNRPN ARL8B MT-ND5 ATP1A1 PPP3CB PTPRN RAB6C-AS1 NCDN ENO2 PCYT2 UBE2M RPL11 CSRP1 ELMO1 NEGR1 CLSTN1 MYBPC1 GAD2 NEFH MT-ND4L NDUFA5 ARL6IP5 RAPGEF5 MAP1LC3B PPP2R1A PCDHGA5 OPA1 C18ORF32 WBSCR17 MTCH1 CREG2 DYNLL2 SMIM13 TMEM35 MBP LGI3 CACNA2D2 NUDT4 YIPF3 YWHAB AP2B1 SNCB UBE2N SSTR2 NRCAM DKK3 RCAN2 MAP1A APLP1 CAMK2D EID1 NDUFB7 MLLT11 CPLX1 H2AFZ ZBTB39 ZNF804A NFIA OAT RAB3IP VWA1 MOBP TMEM51 QDPR BTBD10 ASCL1 QKI PTGDS TPPP RP11-597D13.7 SQLE VDAC1 TOLLIP PTPRM DIRAS1 MAPRE3 GAP43 PPP2CB PCSK1N ATP5B NPTN B2M SCN1B KITLG SYNPO ANAPC13 CKB KCNC2 THOC7 ANKRD18A CFH TMEM200C SKP1 SUMO3 YWHAZ NGFRAP1 NINJ1 FAIM2 NEFL BCL11B CAMK2G SARAF TTYH2 HSP90AA1 DNM3 TRIM35 MAG RTN3 SYT1 STK24 MAP1LC3A CISD1 BTBD11 PGK1 CLTC UQCRB ZNF536 RASGRF2 NDUFA12 PI4KA ATP6V0B ATP2B2 RAB1A ERBB3 TSPAN7 SULF1 BCAS2 SERINC1 PEX5L CRIM1 PIK3R1 TERF2IP PAQR8 GAD1 MYRF MEGF10 TXNIP COX5A TTN NAP1L2 CALM2 ASAP2 MAF OXR1 PSAP BASP1 SRP9 SCAND1 SOX6 GRIK1 GUCY1B3 BIRC5 NGRN NSF RPL21 GTF2H2C_2 RAB3B DPY30 ALDH5A1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 MT-CO2 MTRNR2L1 MTRNR2L12 MT-ND1 MT-ND3 MT-ATP6 MT-CYB ZNF385D OXR1 ATP1B1 MTATP6P1 SYT1 ACTB MAF CYFIP2 RAB3IP UQCRC2 LGI3 CALM2 STX1B RAB11FIP5 GPM6A ATP1A1 EIF4A2 NXPH1 ZNF804A EPHA6 NEGR1 VSNL1 ERBB4 SNX10 PTCHD4 MT-ND2 PNMA2 SNCB CFH TF MTRNR2L6 BIRC5 MTND1P23 SNAP25 TAC1 PPP2CB RBX1 SRP9 CDK5R2 ARF1 PTPRN2 PGK1 INPP5F PLD3 RHBDD2 TENM3 RPL18A MFSD6 BNIP3 TUBB2B COX8A APP PRKACB POLR2J HGF C1QL1 PPP1R14A PPA1 ARL6IP5 ARX KIFAP3 NPAS3 GAD2 CREG2 PPP2R2B SNRPN NAP1L2 HMP19 RPL13A CPLX1 TMEM155 GABARAPL1 NFE2L1 GLIS3 SERPINI1 ENO2 CALM1 NPPC SULF1 BCL11B BCKDHB STMN3 HSP90AB1 PTMA UBB BASP1 NGFRAP1 PRKAR1B PIP4K2A RPL35 MRFAP1 IDH3A TSPAN7 REPS2 PPP1CB MTRNR2L8 PEG10 OLFM2 SRP14 ATP1A3 PHYHIP AES QKI CLU MPPED1 CHMP4B NAP1L3 NPTN NDUFA12 RAP2A TMEM132C FAM19A2 UBQLN2 SPCS2 TPT1 SLC24A2 ECM1 CAMKK2 SEZ6L2 VPS35 PEBP1 THY1 TSC22D1 EIF1AX PSAP SDCBP VDAC1 ARF3 TOMM20 COPG1 CLTC GRIK3 RPS26 RPS27A DYNLL1 CX3CL1 NREP USP5 ISCA1 UQCRH CDC42SE2 COX6B1 GUK1 MAP1B TUBA4A SLC9A1 SPOCK2 CADM2 VDAC3 TMEM230 PRNP NDRG2 DNM3 SYNJ1 MORF4L1 ACP1 PKM WLS PJA2 TPRG1L ADSS OPA1 PDE9A PLCXD3 APLP2 SPARCL1 STXBP1 PPP3CA GAD1 GABRA1 ACTR1A MGST3 PTPRM PTGES3 ALDOA LDHB IDS PCDHA4 PCDHAC1 PCDHA9 PCDHA10 TBC1D15 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB4X PREPL ATP1B1 SNAP25 ZNF385D SNCA OXR1 PAM NGFRAP1 NAP1L3 VAMP2 PRNP STXBP1 RAB3B HSP90AA1 MT-CO1 KIF1A RTN3 SLC24A2 SYT1 MT-CO3 PCDH17 ATP6V1A MT-ND4 VSNL1 GPM6A NPY ACTG1 FAM3C IDS TBC1D15 GDI1 GRIK1 MTCH1 H2AFZ NRCAM ELAVL2 PPIA ARL4C UBA52 SPOCK2 GPX4 TRHDE TSPAN7 DPYSL2 APLP2 LMBRD2 PRKACB NAPB GAD2 RPL37A GNG2 GRPEL1 NEGR1 EID1 MAPK1 SPARCL1 SYT4 RTN4 NPTN MT3 VCAN PNMA2 SLC22A17 FTH1 RTN1 KCNC2 STMN1 CALM1 EIF1AX PEBP1 MT-ND1 FAM219A SKP1 FXYD6 JUND RPL17-C18ORF32 ENO2 TUBA1B PKM DHCR24 SERINC1 TSPYL1 PHYHIPL SLC25A4 CALM3 PEG10 MAP1B TF ARFGAP2 TOMM20 CITED2 AZIN1 ISOC1 PPP2R4 ATP2A2 DUSP1 SUMO2 SST KIFAP3 TPPP NDUFB4 STMN3 ATP6V0E2 SRP9 LYPD6 THYN1 TMEM59L AHNAK2 CCK SOX6 RPL35 STX1A ERBB4 RAB3C C9ORF24 PFDN4 ATP6V1F FLOT2 B3GALT2 GDF10 PACSIN1 MGST3 ACTB PGRMC1 ATP2B2 TH PGM2L1 CAMKK2 NAPA NXPH1 STK39 PTPRT RPL21 TIMP2 PSMD8 APP TUBB4A EIF1B WSCD1 INA SSBP3 SYNPR PSMB5 TMOD2 HK1 BCL11B SLC9A6 ARX UBC FBXO8 TMTC1 DNAJC4 GADD45GIP1 PIK3R1 COX4I1 CHN1 PODXL ARHGAP35 BNIP3 CLTA MLF2 CDK5R1 MORF4L2 ARPC4 TERF2IP PLCH1 SLC7A5 CADM2 TUBB4B RPL23A CREG2 YWHAG NDUFA2 ATP1B2 TBCA NCALD NFE2L1 SMAP2 RAP1GAP2 PEA15 DNM3 RPL7 PSMC3 ITM2B RHBDD2 KRAS SH3RF1 VWA5A ARHGDIG MT-ND3 UHMK1 RP11-111M22.2 ACAT2 KIF3C LRRIQ3 UQCR11 RAN NDUFB8 COPS8 PPP1CB QKI SNRPN GRINA CAMK2N2 KCNAB1 LINC00116 GSK3A ZCCHC17 NDUFC2 HIST1H2AC MAPRE3 ITFG1 SYT11 WBP11 CLSTN1 MRPL52 UCHL1 LPPR4 PHYHIP RP11-219A15.1 MT-ND2 CALM2 TMEM150C ARL6IP5 YJEFN3 PLOD2 GMFB SNCB LGALS1 CTSD KLHL12 HMGCR NAA38 PNOC GABPB1 MAP4 MAP2K2 ABHD8 SCN3B ATOX1 RPS28 CMAS S100A6 B2M SERINC3 CRYAB MT-CYB ARL6IP1 GALNT14 PRKAR1A PRKCB GNG3 SULT4A1 SYN2 EXTL2 MTRNR2L8 UBE2M YWHAH MTRNR2L1 SCN1A MPPED1 EIF4A2 NEFL CAPZB KIF5A PARM1 WIF1 CAMK2D RHOB RAB3IP CPE BASP1 TPT1 GYG1 SUB1 MYL6 DCC PJA2 TSPYL4 KCNIP1 PPP3R1 PTPRN SYNGR3 CTBP1 UBE2QL1 MORF4L1 GAD1 RPL13A NAP1L5 KLC1 ZNF365 IQSEC1 TXN NDUFA5 PITHD1 KCNAB2 CLU SPOCK3 DIRAS1 RPH3A OAT MT-CO2 SEMA4G TCEB2 WASF1 EDN1 TPGS2 SLC32A1 DLD EGFL7 CFH EPHB6 ALDOA RP11-20I23.1 NSF BSCL2 ATP6V0C PCDHA10 PCDHAC1 PCDHA9 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D MTRNR2L12 SLC6A1 VSTM2L MT-CO2 MT-CO3 NDUFA4 NDRG4 MT-CYB GRIN2A HSPB3 CFH COX7C ATG101 MTG1 MT-ND2 DNAJC21 SNAP25 ARFGAP2 ATP1B2 NAT8L MT-CO1 RPL38 TOMM22 SYT1 SNRPN ANKRD18A GDI1 PTCHD4 CABP1 NCALD ATP2B2 IDS PJA2 TSPYL1 NAP1L5 RAB11A MT-ND3 UBC CYCS GLRA2 OAT STAG3L5P MORF4L2 VAMP1 GOT1 ELAVL2 PREPL NDUFA12 SARAF RPH3A MT-ATP6 NEGR1 KCNC3 SERPINI1 PPP3CA ENO2 RASGRF1 MT-ND4L RTN1 WASL STMN1 RND3 TMEM59L PPP3CB CALN1 SCN1A GAD1 REEP5 GAD2 LANCL1 DMTN ETS2 ATP5A1 TSPAN7 MT-ND4 IGSF21 VAMP2 NPTX1 RTN3 ALDH5A1 ETV5 PSAP TGOLN2 TUBB2A CDK5R1 CLTC ERH SUB1 SLC12A5 SYTL5 UBE2V2 TMEM155 PSMD12 PCBP1 RAB11FIP5 MAPK1 PRKAR1A CTNND2 BSCL2 RPL7 RPL26 RP11-111M22.2 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-ND4 MT-CO3 ATP1B1 MTRNR2L12 MTRNR2L1 SYT1 MT-ATP6 SPARCL1 SNAP25 MAP1B GAPDH MT-CYB RTN3 MT-ND3 PKM KCNC2 MTRNR2L8 GAD1 MTATP6P1 SLC38A1 CALM1 MT-ND2 GABARAPL1 ATP1A1 DNER ZNF385D MTRNR2L6 APP ERBB4 GDI1 ARL6IP1 CLTC ACTG1 ELAVL2 ATP1A3 RTN4 SERPINI1 VAMP2 COX4I1 MORF4L1 GAD2 CKB CADM2 SLC24A2 RGS4 EIF4A2 SNCB PRKAR1A ATP6V1B2 PRKACB TAC1 UQCRC1 HSP90AA1 STMN2 DNAJC21 PLD3 MT-ND1 RTN1 PREPL ACTB CLSTN1 ENO2 ATP6V0E2 NDRG4 TSC22D1 PTPRN2 ATP2B2 SCAMP5 PGAM1 NGFRAP1 CAP2 APLP1 OXR1 NAPB MDH1 SLC12A5 OSTN DNAJA1 APLP2 ITM2B ARL6IP5 PEBP1 TCEB2 FAIM2 PRNP SLC22A17 ATP5I ARF1 SNRPN NDFIP1 SULT4A1 PSAP CEND1 NCDN NAP1L3 SPOCK2 PDCD5 TSPYL1 ATP2A2 RAB6A PTPRM RHEB LBH SUB1 DPYSL2 KIF5A KCNAB2 MAP1LC3B CCDC85B TMSB4X NAP1L5 SYT13 DCLK1 ATP5B GHITM MTPN SKP1 NCEH1 ARL4C SPCS2 SERINC3 CALM2 RAB3C GPX4 LANCL1 SLC9A6 TAGLN3 CPLX1 SLC6A1 SERINC1 AES NAT8L CALN1 NDUFB1 OAT STXBP1 PPIA IDS NSF ATP6V0C RP11-20I23.1 NR1I3 MTCH1 YWHAB TSPAN7 HMP19 PJA2 GNB1 EIF1 VGF FKBP4 SPOCK1 SUMO3 SLC25A5 CYCS VSTM2L PNMA2 ATP5A1 SUMO2 RPL41 RASGRF2 LYNX1 QKI YWHAZ GABRA1 OCIAD1 SULF1 NXPH1 KLC1 SEZ6L2 H2AFZ ENOPH1 PRDX2 CNTNAP3 RPL15 CMPK1 HS6ST3 RAB11A RAP1GDS1 SARAF MAP1A ZFAND5 COX7A2L ALDOC NAP1L2 RPS15 SLC6A17 CNTN1 ATP9A MAF UCHL1 YWHAG CALM3 PRDX3 ISCA1 INPP5F MLLT11 SPTBN1 MAP4 OLFM1 BASP1 KLHDC3 DYNLT3 GPM6A MAP2K4 PPP2CB HCN1 GNAQ BCAT1 NDUFB7 SYN2 IDH3A TIMP2 NDUFA13 SEPW1 PITPNA CDK5R2 PPP2R2C HK1 RAB6B SYN1 ADSS RAB3A TCEAL2 NDUFB8 GOT1 RPL8 DYNLL2 CAPZA2 PIN1 TENM3 OAZ1 COX5B HNRNPH2 SNAP91 WIF1 DNAJC6 KIF1A UBE2M VDAC1 CLIP3 COX6C TUSC2 AP2M1 PEA15 NTN4 CRKL ITM2C PTPRT NDRG3 FSCN1 HOMER1 SLC32A1 MAFB KCNS3 MT-ND4L BSN CCDC183 FGF12 MFSD6 BTBD10 ENO1 B3GNT1 ALDH5A1 HSP90AB1 DKK3 PPP2R1A MYL6 FTL RPL21 EFR3A BTBD11 CTNND2 GUCY1A3 NARS EIF4G2 PAFAH1B2 SLIT1 WASL PPM1A GRIN1 RAB1A ARX SIRPA ATP6V1A PNKD ARF3 MB21D2 EPB41L3 TOMM7 RAP2A RAB7A PGM2L1 PNMAL2 KCNK1 RCAN2 CISD1 FBXW11 MORF4L2 UQCRB DYNLL1 PCDHGA6 PAM RAN PCMT1 ADAMTS17 REEP2 STUB1 SCN1A NMNAT2 HAPLN1 EPDR1 SELT KCNAB1 PLCB1 CNTNAP5 NDUFAB1 PTPRS ATXN10 TOMM20 CCDC184 RRM2B GUK1 THY1 SCN2B NAA38 PRKCE PEG10 SLC7A1 OPCML COX8A SLC7A5 DNAJB9 RPL13 CD59 YWHAH TCEAL3 RPH3A ELAVL4 VDAC3 ARL2BP MYL12B WBP2 HSPA8 CTBP1 RPS28 TUBA1B TMA7 PPP2CA MAP7D2 SNCG PAK1 NFE2L1 BSG DNAJB6 SH3BGRL3 SOD1 ATP5G3 PPARGC1A UBB NDUFV1 GADD45GIP1 TPI1 COX6A1 PEX5L NDUFB2 TMEM35 MT-ND5 SERP2 ARL4D ISCU ATP6AP2 EPHA6 RND3 RNF208 NTHL1 NEK7 TBC1D15 C18ORF32 RPL17-C18ORF32 TUBB3 HSPB8 GOLIM4 LHX6 BAG4 RGS5 HSD17B6 NEFL SAP18 RELL2 IGF1 TPRG1L RRAGA YAF2 GORASP2 POMP NACC2 TMTC1 SOX6 CMAS MIF SHD VSNL1 NEUROD6 STMN4 MFN2 CAPZB AZIN1 PIP5K1B DIRAS1 NDUFA4 PNMAL1 ALDOA OPA1 SYNPO TMX4 FUNDC1 CITED2 GMFB C1ORF115 ATP5F1 LAMTOR5 YWHAQ GRIK3 RHOA PHYHIP ZNF365 EPHB6 SCAND1 DPP4 HES4 PGRMC1 C4ORF3 PLCXD3 SLC25A6 D4S234E RAB2A TOX2 VDAC2 PSMD12 BNIP3 UBE2V2 CFL1 THSD7A VPS35 STX1B MRPL12 MDH2 HOMER3 C1ORF52 ANAPC11 STMN1 PFN2 HMGCR NPTXR UBA52 FAM19A2 C19ORF70 ATP5G1 REEP5 IQSEC1 IDI1 DNAJC5 MPI MRPL33 SLC25A22 MAPRE2 SCN1B PTPRN CPE CAMK2G NRCAM PHB MAPK8IP2 UQCRFS1 PCSK1N TPT1 C1QBP BRK1 KCNC3 CTSD SH3GL2 ACTR1A FARSA DCTN1 SNRNP25 GRIN2A PDP1 RASSF8 ISG15 HAPLN4 TOMM22 RAB27B HIGD1A C1D RPL23A GPX1 PSENEN LINC00087 CDS1 ACOT7 CPLX2 NPPC NRN1 PPA1 LGI2 TMEM141 CYSTM1 DHCR24 AP2B1 KIFAP3 UBA1 PITHD1 MMP24-AS1 SYT11 SELM FAM127A SRP14 SYPL1 SERF2 FAM134A MAPRE3 KIF3C GLO1 NHP2L1 AURKAIP1 NDUFA1 ANAPC13 PTGES3 SRP9 RPL11 SALL2 CHN1 ATP5E EIF1B GUCY1B3 MLF2 C16ORF13 STK39 NRIP3 USP5 WASF1 TMEM132C WBSCR17 SYNJ1 TMSB10 EIF1AX FAM163B LSM4 KLHL5 UQCRQ ZBTB18 GPD1 UBE2QL1 CTNNB1 LINC01314 UQCRH FKBP1B AP3S1 PFDN4 DNM3 TMOD2 AKAP12 MYL6B PRRX1 ITFG1 LDOC1L CLDND1 MTX3 SLC39A10 TMEM130 ASAP2 PCDH19 NDUFS6 NDUFS5 KCNF1 SRP54-AS1 APBB1 COX14 OLFM2 YIPF3 TRIM37 SPRYD3 RPL35 GTF3A ZCCHC17 PRKCB PACSIN1 CHMP4B FNDC4 PRDX1 TBCB VAPB CIAPIN1 ARF5 GRIN3A CHST11 SEC61G DYNLRB1 LMBRD2 COX7A2 ATRN NUDT21 KIF21A MRPS28 WARS GOT2 LMO4 FBXO2 NBL1 FAM131B INA SMIM13 JUNB TERF2IP NCBP2-AS2 PLCXD2 NDFIP2 CAMK2N2 SYNGR1 TMEM150C PRDX5 SUSD4 FKBP8 TPGS2 UBL5 RHBDD2 ACP1 RABAC1 PSMC5 FAM3C MPC2 C19ORF43 PTCHD4 TENM1 GLIPR1 CLU RPS4X BHLHE40 MAP2K2 ACTR10 TDRD7 SNN GNG3 MYEOV2 POLR2I CDKN2D POLR2K C14ORF2 C18ORF42 MZT1 CLEC2L RAPGEF5 COPE PFDN1 MRPL55 BEX4 COX6B1 RPL12 NUDT4 C12ORF57 UBE2D2 VAMP1 ATP5O KCNA2 SPOCK3 SLC7A8 VSTM2A KIAA1024 CAPNS1 RBX1 ECM1 MRPL47 CLPTM1 AIMP2 CCDC124 PRELID1 SNX10 FIBP NKIRAS1 FBXL16 PNMA1 ATP6V1G1 PFN1 COL9A3 STMN3 SYNGR3 NDUFB5 BEX1 PPP3CA LPPR4 MTND1P23 TUBB2A ELMO1 FBXL15 MAGED2 CDC42SE2 COX7C CX3CL1 HMGCS1 MAP1LC3A PRKAR1B PI4KA ARPP19 MBP PSMD2 PARM1 NEGR1 TRIB2 FAM131C RPS5 YJEFN3 SYT17 MAP7D1 PPP3R1 GDE1 MAPK1 LGI3 CAMKK2 WNT16 SNCAIP UBE2N MTUS1 SYT4 CDK5R1 SLC25A11 ATP5J2 EPS15 TPPP CHCHD2 C1ORF233 NCALD COPS7A SRD5A1 EXTL2 NIPA1 NDUFA5 TMEM14A TANC1 VEGFA NCOA4 ARFGAP2 GABARAP NGRN PSMB3 RNASEK-C17ORF49 PPP1CB FTH1 HSPB1 BSCL2 TUBB PCDHA9 PCDHA10 PCDHA4 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L1 MT-CO3 MT-CO2 MT-ND4 MTRNR2L12 NAP1L3 MT-ATP6 MT-ND3 MTRNR2L6 MT-ND2 MT-ND1 MT-CYB MTRNR2L8 HMGCS1 MT-ND5 CAMK2G SNRPN PRKCE SPARCL1 OPA1 PIP5K1B CSDE1 ATP6V0B ERBB4 SYT10 FSTL5 PDLIM5 MTCH1 CLSTN1 JUND ANK1 BCL11B NAT8L CKB ATP5A1 SCN1A MARCKSL1 NRGN MZT1 HMP19 RP11-111M22.2 RASSF8 GRIN2A SYN1 PRUNE2 PHYHIPL C3 OPCML KAL1 MAP1B TMSB4X SEPT4 SYT13 CHGB NDUFA4 NPTXR CCDC25 CEND1 RTN1 KCNAB2 CALM1 SNAP25 ALCAM SSBP3 PNMA2 TSPYL1 OR6D1P SERPINI1 RTN4 AURKAIP1 RPL15 OXR1 RBX1 MTATP6P1 HPRT1 PPP2R4 MYO1B PREPL SEZ6L2 NDUFA1 SOX6 STX1B FAIM2 KLHDC3 MT-ND4L CNTNAP3 NGRN ANKRD18A CFH TBC1D15 DNAJC21 ZNF385D RAB3B ESCO2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-CO2 SYT1 SPARCL1 MT-CYB MT-ND3 MTRNR2L1 ATP1B1 MT-ATP6 SNAP25 MAP1B CALM3 NAP1L3 MTATP6P1 HSP90AB1 ZNF804A CEND1 HCN1 CALM2 MT-ND2 NDRG4 ATP2A2 PREPL THSD7A CFL1 SUB1 NACC2 GUCY1B3 ITFG1 SPOCK2 LMO4 SLC22A17 CAMK2D PRNP MTRNR2L12 UCHL1 RTN4 GPM6A RAP1GDS1 MT-ND4L ZFAND5 ANKRD34B SERINC1 GOT1 SARAF EIF4G2 KIF1A KLC1 NUAK1 ATP6AP2 ELAVL2 MTRNR2L6 TBC1D15 ATP6V0E2 SNRPN NDUFV1 ARPC4 SNCB SEZ6L KITLG GAPDH PCDH8 CRH AP1S1 SYT3 BSG RGS12 ACTG1 CLDND2 CDHR1 GDI1 SPOCK1 DNAJC6 HINT1 EIF1 EGR3 TRMT112 YWHAB CALM1 NPTN CLTC NDUFB5 EID1 RPL37A STX1B COBLL1 TSPAN7 AK5 CAMK4 SPTBN1 TSC22D1 OLFM1 PCDH19 MFGE8 SLC24A2 ATP5E MYL6 ATP6V1A SIRPA HOMER1 ATP5B HMGCS1 UTRN LRP1B YWHAZ MORF4L1 KIFAP3 NDUFA5 TRIM37 TMEM59L PTMA IDI1 LANCL1 EPB41L3 TKT CDK5R2 MAGED2 PRKAR1A TOX3 MORF4L2 CAPNS1 YWHAG SP9 NAP1L2 RAB11A TAGLN3 BEX1 ATRN FAM19A2 OPA1 PITPNA LINC00116 FSTL5 NDUFB2 PRDX3 HSPA8 GABARAPL1 RPL13 APLP2 PGK1 ATP5I ETV5 CYCS IQSEC1 CADM3 PACSIN1 RBX1 CAMK2G ENSA PAK1 SSPN POLR2M MDH1 ARL4C THY1 IFI6 MTRNR2L8 PSAP MT-ND1 UBE2V2 KCNAB2 WASF1 PPP2R1A AES SLC39A3 TMOD2 BRAFP1 BSN C1ORF56 SCD5 PTHLH RTN3 NAPB DLX6 BCL11B TBCA NCDN SDC2 ATP1A3 ARL2BP SLC38A1 COL15A1 MYEOV2 PNMA2 VAMP2 DNER CPLX1 PEBP1 EPS15 SERPINI1 SOX6 VDAC3 AKAP12 EIF5A2 MAPK8IP2 LPPR4 TGOLN2 FBXW11 MAP4 NGFRAP1 ERBB4 PPDPF CNR1 TOX2 SYN1 SLC9A6 VSTM2A MAP1LC3B KCNIP1 CLTA LHX6 SGK223 ASAP1 QKI PGAM1 ZNF385D PLEKHD1 NSF NGRN GABARAP CTC-575D19.1 BSCL2 SERF2 ATP6V1G2 PCDHA4 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO2 MT-CO1 ATP1B1 MT-CO3 MTRNR2L12 GAD1 MTRNR2L1 RAB3B ZNF385D PGK1 NDRG4 ERBB4 KLHL5 MT-CYB MEPE TSPYL4 PFDN4 YWHAG NAP1L2 MT-ND2 RAB3C GLRA2 GPM6A HAPLN1 SPARCL1 ARL4C CDC42SE2 CHL1 CTBP1 MT-ND5 CHP1 LANCL1 GNAQ SLITRK1 LYNX1 DNER MTRNR2L6 RPL15 ZNF536 LDB2 SPOCK3 SNX10 PEX5L MAP1A NEFL RGS12 KCNC2 WARS NUDT21 MAP1LC3B FTH1 PRKCE CNTN1 SKP1 GNG2 KRAS FSTL5 CCDC25 NGFRAP1 FNDC4 ITFG1 RPL35 CTNND2 TUBA4A SPTBN1 MORF4L1 UCHL1 PNMAL2 GRIP2 CD59 RP11-111M22.2 VAMP2 GAPDH NDFIP1 SCN2B FXYD6 TSPAN7 TCEB1 SRP9 CLIP3 NAPB MYL6B CDK5R1 RAB11A HHATL CALM1 NPTN FAIM2 STMN3 SYT1 MRPL47 UQCRB TPGS2 KCNS3 PNMA2 PJA2 CLSTN1 LMBR1 MT-ND1 TSPYL1 PIP5K1B MTRNR2L8 MAPRE2 ADD2 MRPS21 MT-ND4L GUCY1A3 SNRPN RTN3 TM2D3 MT-ND3 TOMM70A CDS1 NRCAM MARCKS GOT1 BEX2 ZFAND5 YBEY NDUFS5 PNKD AES MFSD6 CLSTN2 RGS4 GRIN2A ALCAM ATP2B2 WBP11 FAM219A EPB41L3 OXR1 ENO2 MAP1B GABARAPL1 OR6D1P TCEB2 SLC6A1 EIF1AX TOX3 CALM2 RAB6A APBB1 EPHA6 RPL37A GPRC5B ARL6IP5 TLR4 BIRC5 PGM2L1 POSTN BRK1 CACNA2D2 SYNGR1 CYFIP2 SLC25A4 ELAVL2 PEA15 LUZP2 TUBB3 NSF IDS ESCO2 HNRNPA1P40 PLEKHD1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 MT-CO3 MT-CO2 MTRNR2L12 MT-ND4 MT-ATP6 MT-ND1 MTRNR2L8 MTRNR2L6 MT-ND2 MT-CYB MT-ND3 RAB3B RP11-111M22.2 ATP1B1 SYT1 ZNF385D SPARCL1 CALM1 DNM3 ARL6IP1 SERINC1 RGS5 SNAP25 CDK5R2 ARL4C KLHL5 MTATP6P1 THY1 PPP2R2B KCNC2 EPHA6 DPP6 SEZ6L2 APP PPP3CA HIGD1A FTL PCDHGA5 NAT8L TPT1 PLCXD3 GABRA1 SCN1A HSP90AA1 UQCRB PNKD DNER BIRC5 GAD2 DCLK1 FBXL16 EDIL3 ENO2 SLC6A1 TKT PRKACB PTMA ARF3 SYTL5 MPPED1 KIF1A RAB3IP CHN1 SYNGR1 ATP1A3 CPE RTN4 MTND1P23 MAP1B CALM2 C12ORF57 SLC12A5 HNRNPA1P40 NR1I3 GNG3 CBX6 MDH1 KCNAB3 CALN1 RSL24D1 FGF12 CDS1 ASPDH GDI1 GRIN2A NDUFA12 MAGEH1 ATP9A MAP2K2 HMP19 STMN1 ENO1 RPS6 TBCB SERPINI1 MTG1 CALM3 PAFAH1B2 MAPK1 PSMC5 NFIA SNCB KAL1 SCAMP5 DNAJB6 GABARAPL1 FAIM2 TMEM132C ARF1 ATP1A1 PANX1 SPOCK3 MORF4L2 ARPP19 MFSD6 BSG SNAP91 HAPLN4 SPOCK2 DEXI ATP1B2 GAD1 SYNGR3 SLC38A1 MPC2 RAB6B DLX1 NEGR1 PRDX1 LPPR4 NDRG4 MYO1B RAB5C RPS28 D4S234E TSPAN7 NXPH1 C16ORF93 INPP5F RBX1 ATP2B2 PSD3 EIF1AX QKI NUDT4 GAPDH RP11-175B9.2 KLC2 NRCAM COPS8 OCIAD1 TSPYL4 CDC42SE2 TOMM20 CLMN RGS12 LRP1B CNTNAP5 ZNF703 HHATL VSNL1 PVALB LANCL1 SRP9 MAP1LC3A PSMD12 IGFBP6 CLTC LDB2 C1QL1 LYPD6 ANK1 CLPTM1 ATP5B SNRPN C18ORF32 C18ORF42 MT-ND4L EPS15 SYT11 ATP6V1A PSAP PCDH19 GRIP2 ZNF804A BAI2 CERS6 IDS TMOD2 SYNJ1 CPLX2 RAB3C EIF4A2 ENSA PGAM1 PPP2CA PTPRN UBQLN2 SCN3B QDPR CDR2L GUCY1A3 CLU PLTP PACSIN1 NHP2 PLCB1 PKM KCNAB2 TCEAL2 TGOLN2 RASSF3 LHX6 MAP1A BNIP3 PARM1 COX4I1 COX6A1 UTRN PPARGC1A GRIN1 ACAT2 ARHGAP35 ACTR6 C12ORF49 VSTM2L PRKAR1A DNAJA1 TCEB1 CAMK2N2 ERBB4 FAM96B ANKRD18A RPL13 RND3 EID1 TUBA1A SRP14 NDUFB5 ATP5G2 TCEAL7 SOX6 RGS4 ADAM23 GPCPD1 C12ORF60 NCALD MTCH1 BCKDK USP5 KCNAB1 GDE1 NEFH CADM3 UQCRC2 CAMK2D MAPK8IP2 RAB9A CKB CLDND2 TMEM14A FAM3C ATP6V0C NSF RPL17 RPL17-C18ORF32 RPS10 RP11-20I23.1 DPY19L1 MIF RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ND4 SYT1 SPARCL1 ATP1B1 MTRNR2L12 MT-ND2 SNAP25 KCNC2 MT-CYB ERBB4 GAD1 MT-ND3 RAB3B PNMA2 MT-ATP6 MT-ND5 MAP1B TSPAN7 MTRNR2L1 PREPL PJA2 APP ARL6IP1 ACTB RTN3 RGS5 RTN4 MT-ND1 YWHAH ITM2B FKBP8 PPM1A RCAN2 NAP1L3 TUBB2A SPOCK2 TSC22D1 SRP14 CAMK2G MTATP6P1 SERINC1 CALM2 POMP MORF4L1 NAP1L2 RNF11 GPM6A ENO2 GOLIM4 PRNP RP11-111M22.2 TIMP2 CALM1 TMEM130 CHL1 MGST3 NUDT21 SPOCK1 PACSIN1 ANXA7 RHOB TPI1 SPTBN1 SLC6A1 GRIN1 RPL15 HSP90AB1 SEZ6L2 AES SNCG VSTM2L TERF2IP STMN1 SERPINI1 DPYSL2 CLSTN1 NDRG4 SOD1 ATP5B ATP1A3 CALM3 RGS4 RPL17-C18ORF32 MTRNR2L6 ZNF385D GDI1 DYNLL1 SKP1 NFE2L1 SLC9A6 TOMM7 HINT1 BSG CTNND2 PITHD1 CAMK2D TUBA1A EIF4A2 KLHL5 TAC1 ATP2A2 GAPDH LHX6 PCDH19 SULT4A1 EIF1AX PEBP1 MYO1B PPP2CA CDC42SE2 SYN1 RAP1GAP2 TRIM37 ACTG1 ATP6V1B2 PLCXD3 CPE SLC38A1 CLTC ATP6V1G1 DYNLL2 NDUFB8 CADM2 POLR2J TMSB4X OLFM1 CTBP1 C19ORF70 TRMT112 SPCS2 C9ORF16 PGK1 ZMAT2 RPS28 ANK1 PPP2R1A MTRNR2L8 MLF2 SCN2B RHBDD2 RAB6B CAMK2N2 HOMER1 SNCB MT-ND4L RPL41 MDH1 JUND TMA7 MAP4 TMSB10 SYT11 CNTNAP3 HHATL GRIN2A PRKAR1B RTN1 GABRA1 HSP90AA1 BTBD11 NXPH1 TBCB RAB3C PRKCE FAIM2 BCL11B GPX4 B3GNT1 EIF1B STMN3 RAB3A YWHAG ELAVL2 TSPYL4 RPS15 GUCY1A3 PPP2R2B PPIA FTL CLIP3 SNX10 PSMD12 HMP19 PGRMC1 MAP1LC3B EPB41L3 LANCL1 BSCL2 IDS GSK3A YWHAZ STX1A SAMM50 TMEM35 SCN1B FIBP LMBRD2 RAB6A CREB5 SIRPA AP2B1 ELAVL4 NPTN VPS35 ATP6V1A KCNV1 GADD45GIP1 DCTN1 NDUFB5 NACC2 ACOT7 EPS15 ATP6AP2 ATP5F1 HRH3 PPP1R7 NGFRAP1 NDRG3 USMG5 PNMAL2 BEX1 RPL8 PPP2CB IPCEF1 PTMA ZBTB20 GRIN3A AK5 OPCML DPP6 CNP NDUFA1 EIF5A2 TBCA CAB39 PPARGC1A DYNLRB1 QKI FXYD6 ABHD14A UQCRB TCEA2 H2AFZ GNAQ OAZ1 PAM CAPZB TENM1 MTCH1 ZNF703 TCEB2 FAM84A VAPB LYPD6 MAGED1 YAF2 HDLBP NDUFB11 CDH13 DYNLT3 NAA38 ALDH5A1 BEX4 CDK5R1 VCAN DUSP1 SEPW1 PRKAR1A SOX6 SCOC TMEM191A NRF1 ATP1A1 TPGS2 MT3 PLD3 CTU2 EID1 ANKRD18A PFN2 HK1 TUBB4A PRKACB CKB KIAA1211 SUMO3 CHN1 FAM127A SLC7A8 CPLX1 WASF1 UBE2N PCDHB4 ARL8A RPH3A SERP2 MAF RPL12 RBX1 BTNL9 SCN3B MARCKS OAT SCD5 TCEAL7 C6ORF1 PPP3CA RRAGA CACNA2D2 NCALD EIF4G2 RPS3A LUZP2 POLR2I STXBP1 KCNK1 DDAH1 RPL13 ZNF536 ELMO1 ANAPC11 ATP5A1 SYT4 TSPYL5 BSN PCSK1N STRAP COX14 COPRS MAP2K4 KRAS CCK SYNJ1 DCLK1 ARPC4 CDK5R2 SLC12A5 VDAC1 LBH CCDC184 PRDX2 APLP1 HMGB1P8 PSMC3 DEXI STMN4 HSPBP1 TRIM47 RND3 COX4I1 AURKAIP1 MZT1 OXR1 SYT13 VAMP1 VSTM2A RAPGEF5 PNMAL1 NME1 SP9 NDFIP1 POSTN ATP5O PHYHIPL SLC6A17 APLP2 THY1 DBNDD1 TUBB4B RPL31 NRCAM GABARAPL2 ARF5 GUK1 PTPRN NDUFA13 COX7C CEND1 CHST11 OLFM2 PFDN4 KLC1 PGM2L1 UBC RPL35 SCN1A GSTO1 LSM4 FGF12 ATP9A SUCLA2 KCNF1 MARCKSL1 FABP5 CFL1 OPA1 PNOC HPRT1 HFM1 PEA15 GRIP2 BCAT1 MORF4L2 ASAP1 MBP TCEAL2 PDP1 KIFAP3 EIF1 CTSD SLIT1 RLIM MAP1A PTPRT TENM3 RTN4R COX7B GPR98 COX6C HS6ST2 CYFIP2 MAPK1 PTPRS PEX5L MFN2 PSAP MRFAP1 OLA1 RNF181 ARF3 PTCHD4 PRELID1 COX6A1 RHOA ATP5J2 ENSA STMN2 MAPK8IP2 NCEH1 SLC7A1 LPPR4 RPL39 ZFAND5 RASSF8 PTPRZ1 DKK3 UCHL1 DNAJC5 TPT1 ATP2B2 SLC39A10 SLC35B1 PPP3CB MTUS1 DNAJA1 ATP6V1G2 NGRN ATP6V0C TUBB3 PSMB3 RP11-20I23.1 RPL3 TUBB ALDOA RPL21 MIF DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-ATP6 MT-CO1 MTRNR2L1 RAB3B MT-ND4 MTRNR2L12 SYT1 MT-ND3 ATP1B1 MT-ND1 MTRNR2L6 ERBB4 SNAP25 MAF CLSTN1 EFR3A MT-ND5 CALM1 IDS MTATP6P1 MT-CYB SPARCL1 MTRNR2L8 OR6D1P SUCLA2 NCAM2 PTCHD4 RPL8 OXR1 SCN1A WBSCR17 RTN4 KLHL5 UCHL1 PTMA GRIN2A ARX RPS28 CAMK2G MT-ND2 AKR1E2 HHATL PGAM1 DNAJC21 TF NR1I3 BAI2 HCN1 ATP6V1A GAD1 PLEKHG3 MTCH1 RPS15 CAPZB FAM19A2 SEPT4 PLCB1 UROS CSDE1 RAB6A RUNX2 LRRC39 TMA7 KCNAB2 ZNF536 ACTB ITM2B KCNAB1 TMX4 TSPYL1 SLC6A1 RGS5 CHMP5 CALM2 LYSMD2 PRKAR1A CHN1 MYL6 ATP1A1 SNCB NCEH1 EPB41L3 ELAVL2 SEPW1 HSP90AB1 EIF4A2 SERF2 SCOC PREPL BANF1 THSD7A ATP5A1 RPL13 PARP14 STMN1 LANCL1 SLC39A10 HRH3 PNMA1 DCLK1 SNRPN PLOD2 ARHGAP35 IQSEC1 CYFIP2 NAP1L2 CDC42SE2 GSTT1 EPHA6 KLC1 PKM ATP5I CNTN1 MYO1B ATP6V1G1 HSP90AA1 TPT1 RPL21 VSTM2A GPRC5B NAT8L MAP1A APP PCSK1N AP2M1 PGK1 UQCRB ENO2 C20ORF24 PRNP MPPED1 FAT3 ATP1A2 RPL15 STXBP6 CDS1 NFE2L1 OCIAD1 RGS4 SLC12A5 VAMP2 MAFB STXBP1 BSG ELMO1 ARF1 PRUNE2 SPCS2 NBL1 NTN4 MTPN DMTN PRKCE ENSA TOMM20 PRKACB GPX1 RCAN2 QDPR TENM1 COX7A2L POLR2K GRIP2 CDH7 DPYSL2 PHYHIPL USMG5 NMNAT2 TSPYL4 RAB3IP SEC61G MLLT11 PEBP1 ISCU TMTC1 RAB6B AES DNM3 BEX1 TOMM70A DNAJA1 CEND1 RHEB PID1 SOX6 STMN4 PPP2R4 UBE2V2 SYNGR1 ARL6IP1 RPL7 ATP2B2 GAD2 UTRN ABHD8 GDI1 CYCS RAB3C MZT2B RPL13A C18ORF32 B2M NGRN RPL17-C18ORF32 RPL3 CFH ARF5 MIF CYB5R3 PCDHGA6 SYTL2 DPY30\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SPARCL1 MTRNR2L12 MT-CO1 MAP1B RTN4 STMN2 MT-ND4 MTRNR2L6 SERF2 PEBP1 SLC6A1 BCL11B MRPS7 ITM2B ATP1B1 PSAP KLC1 TSPAN7 SYTL2 ZNF385D RAB3B TBC1D15 RPL13 OPCML GRIN3A PRNP SEZ6 ERBB4 TCEAL7 GHITM ZFAND5 MT-ND1 NACC2 MT-CO2 PRDX5 CCDC85B DNER ATP1A3 SYT1 KLHL5 GRIN1 NDUFB2 RPS27A PACSIN1 EFR3A ZBTB20 COL15A1 SUSD4 RTN3 SLC12A5 RAN MT-ATP6 SCD5 RPL13A MT-ND2 RBX1 HS6ST2 TF CFH IDS HNRNPA1P40 FAIM2 LMBR1 NDUFA1 ENO2 KCNC2 FTL HMGCR AP2B1 RASGRF1 CD59 EID1 DYNLRB1 TERF2IP SNAP25 ANK1 FAM163B MLF2 MT-ND3 PJA2 WBSCR17 SLC25A6 GAPDH TMEM147 ATP5E COL6A1 SYN1 LGI2 AURKAIP1 ATP6V0E2 UQCR10 NDRG3 ARL4C SMIM12 ANXA6 THSD7A EIF1 KCNA2 FBXO2 AP2M1 FGF12 RP11-20I23.1 UQCRH HMP19 GRIN2A TMTC1 PTPRN CRYAB MT3 GUCY1A3 DLX6 ECM1 APP REEP5 MDH1 TOLLIP GNB1 CITED2 NUAK1 SYT11 MAFB DKK3 ACP1 APLP1 PPP1CB TMEM120A SCAMP5 LHX6 PSMC1 ATP6V1F VSTM2A USMG5 MZT2B RAPGEF5 PEA15 NEFL GPR149 KITLG THYN1 ATP1B2 CAP2 CCK NKIRAS1 ATP6AP2 ADAMTS5 CAMK4 PPP2CB ATP6AP1 UQCR11 CAB39 MAP4 SLC38A1 ATP6V0C CALM3 ELMO1 YWHAB FSTL5 NDN NEFH ELAVL2 APBB1 PREPL ERH FIS1 MT-ND5 GABRA1 ENO1 AES PVRL1 PPP2R2B ADD2 THY1 BSN MFN2 CEND1 NDUFS6 NPTN TMA7 NAP1L2 RORB SEPW1 NPPC MTRNR2L8 PCBP1 PTPRM CRH GYG1 ARHGAP29 OLFM1 TPRG1L RPL15 RCAN2 DSTN ZNF536 COL21A1 NGRN NCALD D4S234E COX4I1 GABARAPL1 MTX3 PPM1A DYNLL2 FBXW11 THOC7 PKM SNCB RPL7 RPS12 RPL11 GPM6A RTN1 VDAC2 PPP3R1 TMEM130 OR6D1P CHMP4B HSP90AB1 CNTNAP3 CRIM1 SNRPN GRIP2 CLTC SERINC1 RPS15 TMSB4X ARL6IP1 CTSD PLD3 NUDT4 RPL3 PVALB TUBB3 MAP1LC3B NDUFA13 RPL36A PCDHA9 PCDHA4 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 ATP5E SNAP25 ZNF385D RAB3B TSPYL4 KCNA2 RPS15 NDUFB2 ERBB4 RPL23A MT-CO1 COX7C RTN3 RPL41 PHPT1 RPL8 RPL31 RPL13A PRNP ATP1B2 RPS10 ATP1B1 KIFAP3 PLCXD3 VAMP2 FTL RPS28 GABRA1 GRIP2 ATP6AP2 KLC1 NR1I3 HNRNPA1P40 GRIN2A RAB6A PPP2R2B KLHL5 MFSD6 CDC42SE2 RPS26 CEND1 CCK TKT SCN2B ZBTB18 CCDC61 THSD7A RPL26 REPS2 NARS D4S234E UCHL1 NAPA DNAJB6 UBA52 CREB5 MRPS7 BIRC5 OCIAD1 SLC12A5 ATP5G1 MTRNR2L12 ADAM23 TM2D3 SLC9A9 CCDC124 OXCT1 SYT11 ZNF536 ATPAF1 DCLK1 MAP2K4 CKB WASF1 TMA7 PTCHD4 VSTM2A MT-ND3 MT-ATP6 OR6D1P NDUFA13 C12ORF57 CLTC RPS12 ENO2 HOMER1 EIF4G2 RPL38 NAPB TMEM65 RPL21 LRRIQ1 RAB11A RPL3 WLS PRKACB C6ORF1 TPI1 RPL13 SYNGR1 SSBP3 STXBP1 COA4 BEX1 PINK1 NDUFB5 THOC7 SCN7A YWHAH PLCB1 RND3 SERINC1 APLP2 QKI MT-CYB RASGRF2 POLR2I OXR1 RTN4 RPS3A CERS6 CRYGN PI4KA CDS1 PSMA7 LYSMD2 NGFRAP1 TBCB CALM2 TMSB10 TUBD1 HSP90AA1 RPS27A GYG1 ACTG1 CHP1 ADAMTS17 REEP2 CDH22 PTPRM ECM1 PTPRN DCTN1 SCN3B RPS5 DGUOK APP VAPB NFE2L1 C1ORF56 HTRA1 ANXA6 CIAPIN1 EID1 MGST3 OPA1 TUBA1B TOMM7 PEA15 BEX5 PTPRS RNF11 LMO4 SPARCL1 RPL35 RPL17 CD59 MYO16 GUCY1A3 ATP6V0E2 PTMA RABAC1 SCN1A RP11-20I23.1 ATP6V0C PLEKHD1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D MT-CO3 MT-CO2 MT-CO1 MTRNR2L1 MT-ND4 ATP1B1 MT-ND2 SLC24A2 KCNC2 RAB3B SYTL2 TSPAN7 SYT1 IDS MAP1B PTCHD4 PGM2L1 ELAVL2 EIF4A2 QKI EPHA6 NXPH1 CALM2 SLC38A1 SNAP25 MTRNR2L6 TF ALCAM RPL31 PPP2R1A SLC6A1 PLCB1 CDK14 FAIM2 CHN1 RPS26 ATP2A2 SCN1A NCAM2 CALM1 C11ORF31 RPL37A CAP2 MT-ATP6 YWHAB GAD1 CAMK2G NEFH EIF1AX CLIP3 ARL6IP1 KLC1 MORF4L1 GAPDH TOMM20 ANKRD18A PGK1 CNTNAP3 GDI1 PNMA2 NDFIP2 NDRG4 MTND1P23 DLD CYCS UQCRC2 SEPW1 COMMD6 SERPINE2 ACTB DNAJB6 LDHB WARS RASGRF1 NDFIP1 HHATL NRIP3 HMP19 C4ORF3 SRP14 CSDE1 EPHB6 CISD1 CERS6 EID1 IQSEC1 FLOT2 GAD2 ABHD14A RGS4 PTPRN2 ARPC4 CCDC154 CLSTN1 COL11A1 CFL2 RELN ATP6V0E2 TMEM132C PAM RASSF3 LMO4 MRPS7 CTNNB1 STMN4 MT-ND3 MZT1 NPTN APP H2AFZ BCHE ABCA8 SCOC MAPK8IP2 SYT11 ATP9A MT-CYB TCEB1 CTNND2 CDS1 SDC4 COX4I1 PPP1CB RPS3A CNR1 ATP5J STXBP6 FXYD6 RPS28 MAP4 NAPB PREPL KIF5A TPT1 GLUL MAPK1 AP2M1 PPP2R4 SEPT4 MRPS21 EIF1 HMGCR PTPRN ADAM23 PSMD2 RHOB ANK1 UHMK1 RPL17P50 PSMC5 RTN1 EPB41L3 GOT1 PPP2CB RTN4 DCTN1 PCDH17 NDUFB4 LYSMD2 HSPA4 SULT4A1 PAQR9 PGRMC1 RBX1 YWHAG ACTR10 GLO1 ATP5G1 HSPB8 CBX1P1 VAMP1 COX7C KIFAP3 STX1B MFN2 HPRT1 FGF12 HIGD1A TAGLN3 SMS SPOCK3 TMEM150C PKM RPL26L1 CLIP2 LGI2 NGFRAP1 LDOC1 PSD3 ATP2B2 PPP3CA KCNA3 RAB3A RPL32 RAPGEF5 VWA5A KRT8P3 PPM1A CDH7 THY1 KLHL5 APEH MT-ND1 NEK7 KIF21A GRIP2 ENO2 CLTC ZNF880 C11ORF96 RAB4A DLC1 BEX2 MT-ND5 MYRIP HS6ST3 RAB6B UCHL1 COL3A1 RPL39 SYNPR OAZ1 ARL2BP RCAN2 COX6B1 HSP90AB1 PHYHIPL TUBA1B LANCL1 PRKCB ERBB4 TMEM230 PGAM1 CDC42SE2 PCDHGA5 NAP1L3 RTN3 DYNLL2 NAA38 BCAT1 KIF3C RAB11FIP5 SCD5 HNRNPA1P40 NDUFA13 RP11-111M22.2 RP11-20I23.1 NGRN ATP6V0C SERF2 CORT TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ATP6 MT-ND2 MT-CO2 MT-CO1 MTRNR2L1 MT-ND4 SYT1 MTATP6P1 RAB3B SNAP25 GAPDH SPARCL1 MTRNR2L6 CKB MTRNR2L8 ELAVL2 MTRNR2L12 DPYSL2 PTGDS SCAMP5 MT-CYB SCN1A TF NDFIP1 ATP1A1 RPL26 SYT13 NDUFA13 NAPB KCNC2 TMSB10 RPL21 RUNX2 PTPRM RPL8 CYFIP2 SCD APLP2 MGST3 HMP19 ITFG1 TIMP2 SPTBN1 HDDC2 CFL2 ATP1B1 MAF TMEM144 RPS4X EIF1 MLLT11 MT-ND1 ARL4C THY1 MT-ND3 TUBA1B NPTN ASAP1 SSTR2 C14ORF2 SLC12A5 SYTL2 ZNF385D MIR6723 SLC25A4 EIF1AX GABARAPL1 HIGD1A MBP PTMA PSMC1 ZFAND5 TPPP CAMK2D ANK1 PSMD2 COX7B DACH1 APBB1 GDI1 EDIL3 SKP1 CRKL NDUFA8 TAC1 TMA7 SYN1 SCN7A MYRIP TOMM20 EID1 ATP5B SIRPA GRIN2A TMEM164 LANCL1 RPL37A GOT1 PVRL1 PRKACB MAP1B ELAVL4 ATP5F1 OXR1 SEPP1 TGOLN2 CALM1 CEND1 FUNDC1 LGALS1 PKM HCN1 PRPS1 PTPRN COPG1 TUBB2A MT-ND5 INPP5F CNP PRKCB SYT17 RTN1 AHNAK2 SUMO2 WI2-1896O14.1 SERPINI1 ELMO1 MRPS21 RP11-111M22.2 RPL15 RTN3 CDK5R1 PREPL EIF4G2 TMEM155 CALM3 MTG1 APLP1 BIRC5 CNTN1 ADSS ENO2 TMSB4X TMEM179B SERINC1 CHADL ATP9A ANKRD18A SMS CLTC KLHL12 ITM2C CSDE1 SLIT1 AAMDC RELN STMN3 POLR2L IPCEF1 TMEM150C DNAJC21 BEX4 FAM107B TMEM63A RAB4A CDS1 RPL32 MTND1P23 PIP4K2A C1ORF52 PTPRS RTN4 PRR18 FAIM2 NDUFB7 LSM4 CADM2 NRSN2 ARL6IP1 ZCCHC17 BCAT1 PPARGC1A CDH7 NOP10 ATRN HSP90AA1 ATP6V1A CCL27 TRPT1 MYO1B SLC8A2 SEMA3C HS6ST2 SCN2B RAB6B SULF1 COX4I1 PACSIN1 TMEM147 COX8A PJA2 CCDC85B ATP2A2 PLEKHG3 DNER EIF1B RAP1GAP2 CLDND1 RPL38 ADD2 TMEM59L ARHGAP35 PHYHIP MAPKAPK2 MAL CYB5R3 BSCL2 NGRN PCDHAC1 PCDHA4 PCDHA10 PCDHA9 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 TBC1D15 SYT1 DNAJC21 ATP1B1 SNAP25 NR1I3 ZNF385D ENO2 CALM2 BIRC5 FAIM2 RAB6A DNM3 NARS MAP1B CKB FGF12 DCLK1 NDUFA12 ATP6V0E2 BCAT1 MYO16 SERF2 VSNL1 KLHL5 SYTL2 TUBD1 DYNC1I1 NCALD UHMK1 SYN2 SERINC3 LL0XNC01-16G2.1 SYNGR1 MYRFL TLE4 MGST3 SLC24A2 SLC6A1 CKLF TMOD2 TENM1 ATP1A1 REEP2 APP UQCRB ATP1A3 ELAVL2 TOMM7 SLC1A2 OR6D1P FTH1 GOT2 ANXA7 KCNC2 MT-CO1 NFIA VAPB ARL4C CNTNAP3 CPLX1 IDH3A UQCRH ANXA6 VDAC1 MORF4L1 EIF4A1P8 POLR2M PPP3CB TM2D3 ACTB SCN1B RTN1 CADM2 COX7C SPARCL1 NOS1 PRKCB STMN3 PKM GSTT1 SNRPN OAZ1 RAB3IP IDS RPS26 PRDM1 UROD IQCK ANGPT2 ROBO2 HSP90AB1 SEZ6L2 PPARGC1A SYNJ1 APLP1 PNOC FAM19A2 PSMC5 ALDOC ASCL1 ATP5H TSPAN7 ENSA SYT13 PLAUR RPL3 NDUFA4 ATP2B2 KCNS3 MANBAL SAMM50 SOX6 NEGR1 SCN1A LBH TOMM20 SNAP91 OXR1 CTNNB1 SOD1 ANK1 GRIN1 SNRPE CYCS CACNA2D2 ITFG1 RAP1GAP2 KCNA2 NDUFB11 COX7A2L PSAP TSPYL4 SLIT1 NDUFA11 EPHA6 EPHB1 NEFH PLCXD3 NUAK1 CHN1 BASP1 RPL21 ECM1 UQCRQ VAMP2 TBCB ATP5J BCL6 C12ORF49 KIFAP3 ATP5I MTG1 PFKP VWA5A MCHR2 SLC12A5 SLC39A10 RGS5 BEX1 CALN1 VEGFA IGF1 CALM1 RPL8 ARL1 KIF3C NAP1L5 LINC00086 GSK3A DNAJA1 NDUFS5 GAD2 NRIP3 YWHAB HCN1 PIP4K2A CDH6 SMAP2 LDB2 FABP5 CDH7 GPX4 TMEM65 PCDHGA5 TMX4 PTPRS ETV5 KCNAB2 OAT RNF208 GPRC5B BCAS2 TPT1 TCEA2 PREPL NDUFB8 RPS28 CLPTM1 MORF4L2 ETS2 STX1B TOMM70A PEBP1 PTPRM AURKAIP1 PDCD5 RPL35 OXCT1 TCEB2 NDRG4 SEPT4 SLC9A6 CLMN PRKCE NDUFA8 MAP2K4 TNS1 MED31 SYT2 LCNL1 CA11 C8ORF4 OPCML HINT1 DRAP1 MT-ND4 ATP6V1B2 KCNA1 COL24A1 MTRNR2L1 MAPRE2 ATP6V0B NAPB RLIM DYNLL2 UQCRC2 SPOCK2 CLTB ITPR2 PPP1R9B VDAC3 ATP2A2 SCN2B PCP4L1 MAP1LC3B TPRG1L SULF2 USMG5 CNTNAP5 C14ORF2 RPL15 LYNX1 CALM3 HSPE1 CCDC184 ERBB4 APLP2 ANAPC11 BAG4 NDFIP1 GDI1 PRKACB PTMA CLDND2 SCAMP5 RHBDD2 PPP2R2B LSM4 RTN4 NDUFA13 BEX2 VDAC2 ATP9A TPPP LPPR4 RPL26 LMO4 NDUFA1 ARF3 FABP7 APBB1 TMEM35 UBL4A GNG3 TUBA1B TSC22D1 RASGRF1 TIMP2 PNMA1 TRIB2 LMO2 HOMER1 SLC7A8 ATP5G2 GRIP2 CHP1 MTRNR2L12 GAPDH TRIM37 RAB11FIP5 RPL23A LRP1B RNASEK-C17ORF49 PVALB LINC01296 NSF C11ORF31 MIF CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 ATP1B1 SNAP25 GAD2 MTRNR2L1 SERINC3 MT-ND4 ACTB SYT1 IDS DNAJC5 PRKACB KLHL5 SPARCL1 GNG5 PKM GPM6A CDK5R1 RAP2A MAP1LC3B RPS28 THY1 GAD1 PRKCE KCNC3 MT-CYB KCNC2 RTN3 OAZ1 SLC12A5 RGS4 NDUFV1 RAB3B MTRNR2L6 ZNF385D DYNLL1 CNTNAP5 KLC1 PI4KA HHATL MT-ATP6 MYL6 TOMM20 FAM219A RPL37A RPL32 NAT8L CORT RPL13A RPL41 GDI1 MTRNR2L12 FAIM2 HMP19 FXYD6 GABARAPL2 SLIT1 DIRAS1 PPP3CB PRDX1 CNP AES PPP2CB COX7C SCD5 ATP2A2 CPLX1 RNF11 ATP6V1B2 KCNAB3 PPIA SNX10 SNCB MT-CO1 PTMA ELAVL2 NRCAM RBX1 KCNA2 NEGR1 RAPGEF5 SLC6A17 RPL17 SSTR2 GAPDH WBP2 PLD3 WSB2 TSC22D1 DLD SUMO3 UQCRH NGFRAP1 ERBB4 MGST3 PPP3CA PLP1 SYTL2 ESCO2 CNTNAP3 C11ORF31 HGF PHLDB2 SMAP2 STMN3 UROS HDLBP TIMP2 MAP2K4 SLC22A17 RPS15 EFR3A HMGB1P8 HMGCS1 FGF12 PSMC3 AKR1C2 TMEM258 SPTBN1 PTPRN ACTR1A MYO16 BSG ATP6AP1 RAB11FIP5 CDC42SE2 GNB1 TSPYL1 SLC40A1 CLTB SPRYD3 ARL1 NRF1 PRDM1 TMEM14A COL25A1 SERPINE2 SCOC PRDM8 BEX1 RPS26 PTPRS MFN2 NDUFB11 STX1B C19ORF53 RASGRF2 IQSEC1 EIF1AX NDUFB7 ALDOC OLFM2 SLC7A8 UBE2QL1 PGK1 AP2B1 SRP9 SEPW1 ATP5O RTN4 ARHGDIG MT-ND1 RLIM COX4I1 ANXA6 VEGFA CYB5R3 BASP1 GOT2 NAP1L3 RPL8 RHEB PSMC5 PNMAL2 CRYAB MT-ND3 RPL21 PRKAR1A GABRA1 CNTN1 RASGRF1 HTRA1 DMTN BAI2 CTGF VSTM2A SYNGR3 SYT11 CREG2 LANCL1 SLC7A5 NR1I3 SPOCK2 RAB3IP ALDH1L1 UBE2D2 PEBP1 PDP1 SLC25A4 PACSIN1 RPS27A RPL35 SPCS2 ACTG1 EPHB6 JUND MMP24-AS1 PCSK1N MLF2 NDRG3 FLOT2 ATP6V1E2 OCIAD1 NACC2 PGM2L1 NDUFA11 RAB3C PSAP PSMB5 ATP2B2 SLC25A6 EIF1 LSM4 YWHAG GNAQ EIF4G2 ZNF536 HMGCR DNER VDAC1 MAP1A SUMO2 APP LMO3 DLX1 EID1 RPL10A BAALC C14ORF2 PTCHD4 FASN CHCHD2 TLN2 ATP9A STMN2 NXPH1 KCNMB4 CRIM1 PAM CALM1 SNN PHF11 ANAPC11 GRM8 NCAM2 NDUFB8 ADSS GRIN2A MPPED1 VAMP2 RAB3A ROBO2 ENOPH1 RTN1 STUB1 KCNAB2 RASGRP1 DNM3 OR6D1P CALM3 SYNGR1 SLC17A7 HINT1 ATP6V1E1 NCEH1 GMFB ELAVL4 SYN2 PPDPF ATP1A3 TPT1 SNAP91 CLTA STK24 NCALD PLCXD2 TSPAN12 PRNP UBA52 GLIPR1 UQCRC1 MYL6B ATP1A1 ACP1 CAP2 STXBP6 SSBP3 VSNL1 VPS35 RHBDD2 CKB NAP1L2 PSMD2 TCEB2 CPNE8 DNAJA1 TMSB10 NDUFA5 CITED2 HSP90AB1 TRPV2 MAPK1 LYNX1 CLSTN1 SCN1B SPOCK3 ENO2 ATP6V0C RPL15 NSF PVALB RP11-20I23.1 ARF5 RPL26 ATP6V1G2 ARFGAP2 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-ND4 ATP1B1 SPARCL1 GAD1 SNAP25 MT-ND3 TMSB4X MT-ATP6 GAPDH MT-ND2 RPS28 MAP1B MT-CYB RTN4 SLC6A1 ERBB4 RTN3 VAMP2 RAB3B SYTL2 RAB6B ATP1A3 SYT1 PREPL EIF1 HSP90AA1 CKB PRNP MTRNR2L12 ATP5A1 HSP90AB1 TBC1D15 SLC24A2 ISCU TSC22D1 ACTB CALM2 NXPH1 ELAVL2 MTATP6P1 RTN1 APP MTRNR2L1 OXR1 KCNA2 GPM6A COX7C APLP2 NDRG4 NDUFA4 CALM3 SUMO2 NDFIP1 PGAM1 CFL2 MAPK1 PPIA GAD2 PRKCE ITFG1 PEBP1 RPL35 SKP1 RPL15 MT-ND4L RNASEK-C17ORF49 ARL6IP1 CALM1 OPCML CYCS D4S234E TCEA2 NDUFAB1 PSAP PINK1 TPI1 NGFRAP1 ARL6IP5 TSPYL1 UQCRB PRKACB STMN2 ATP1A1 TIMP2 RPL21 MT-ND1 ATP2A2 RGS5 ATP5B TENM3 NAP1L3 SCD5 NAP1L5 YWHAG RNF11 UQCRH UBL5 KIF21A PPP2R2B EXTL2 ATP9A MAPRE2 IDS FAM3C EPS15 RP11-111M22.2 DNER NDRG3 SLC39A10 POLR2I CAMK2G SLC7A1 RPS26 SSBP3 TSPAN7 STMN1 MAGED1 AP2M1 ATP6V0E2 NAPB LAMTOR1 LHX6 ATP5G3 UHMK1 THY1 RAPGEF5 SERINC1 ATP6AP2 RPL8 EIF1AX CYFIP2 C9ORF16 POMP NDUFA8 SEPT4 DNAJB6 BTBD11 GRIN2A ATP5G2 PTPRM TUBB4A HMP19 GABRA1 MMP24-AS1 CADM3 ADSS SEPW1 RBX1 DNM3 YWHAB DCLK1 GPX4 TENM1 ATP6V1F SNRPN RAB3C NCEH1 MAP4 MT3 RPL32 VSNL1 TUBA1B NDUFA1 VDAC1 KAL1 PJA2 SPCS2 CNTNAP5 SERF2 EIF4A2 MAP7D1 MDH1 PPARGC1A CLTC GHITM PAM NDUFB7 MORF4L1 PGK1 MT-ND5 PKM COX6C OAZ1 RAN RPL37A KCNC2 GYG1 ATP6V1B2 RPL41 CHCHD2 RP11-20I23.1 ATP6V0C HNRNPA1P40 ZNF385D RASGRF2 LBH MRFAP1 MTCH1 SIRPA ADAM23 FAM134A RAB6A NMNAT2 VAMP1 RPS3A CD59 KIFAP3 C1QL1 RPL36A ACTR10 HINT1 NDUFA12 THOC7 COX6A1 MRPL47 ATP5J2 PPP3CA QKI TERF2IP CSDE1 PPP2CB RPL13 NEFM ATP6V1E1 VEGFA NDUFC2 ZFAND5 UQCRC2 ACTG1 SCN1A COX6B1 ZCCHC24 PPM1A KLC1 GAP43 WDR47 FAIM2 APLP1 GPCPD1 RPL17-C18ORF32 DKK3 YWHAH PTPRN2 FGF12 COPRS ENSA CALN1 EID1 RP11-632C17__A.1 CLTB SUB1 PIK3R1 UQCR10 NEFL UBE2QL1 YWHAZ ENOPH1 SNCG EFR3A KLHL13 FAM163B UQCR11 MRPS21 MPC2 FTH1 SLC32A1 STXBP1 SLC39A3 MTRNR2L6 LANCL1 CFL1 RPL38 SLC38A1 B3GNT1 LDHB KIF5A GOLIM4 GNAQ ANAPC11 CPLX1 BEX4 RGS4 CAP2 TMA7 FKBP1A RLIM FAM149A RFK DNAJC6 VDAC3 ATP6V0B JUND MPPED1 KLHL5 EPHB6 NDUFA5 RHEB CLU OLA1 NRIP3 ATP6V1A CPE PNMAL1 NAP1L2 UCHL1 KLHL12 ATP6AP1 SLC22A17 TUBB2A CTSD TMOD2 ARX NDUFAF3 ENO2 FABP5 ARL4C COX7A2L TXN NCDN PAK1 SLC25A22 KIF1A TOMM20 CDK5R2 BSG ARHGDIA DLX1 NOP10 DNAJC5 MAP1A TMSB10 TMEM59L LRP1B C19ORF53 REEP5 GPX1 RPS5 GDI1 DPP6 KCNA1 TXNDC17 SPOCK2 FXYD6 DNAJB9 RPH3A CTBP1 SCOC DYNLL2 PTPRT RAB11A KIF3C GOT1 PPP1R7 OCIAD1 SPRYD3 RPS15 SUCLA2 MLLT11 PRDX5 WBSCR17 SERPINI1 MLF2 SPOCK3 SDCBP ATP5J COX5B IDH3A VPS35 NSF ARFGAP2 ZNF385A PSMB7 SLC35B1 CRIM1 CDH13 COX5A CAMK2D SLCO4A1 CCND1 SCAMP5 ANAPC13 PTCHD4 ELOVL7 TSPYL5 PSMD12 CBX6 MRPS7 RPL31 MANBAL NEGR1 GSTO1 ARL4D PHB CLIP2 PIN1 CNTNAP3 RPL10A LDB2 NDUFB5 OXCT1 FAM84A BCHE EDF1 TGOLN2 NAT8L CREG2 RPS4X RPL18A SV2B HIGD1A NDUFB10 OPA1 STX1A LMBR1 PNMAL2 BAD NXPH2 VSTM2L OSTN MBOAT7 NRSN2 TMEM130 UBQLN2 TMEM65 ALK SLC25A4 SPRN PLCB1 WBP11 RAB5C PRKCB KCNK1 CYP26A1 CEND1 CHMP4B SULT4A1 NDUFC1 HPRT1 IQSEC1 MYL6B NAPA GUCY1A3 PRDM1 MIEN1 COX4I1 TRIM37 WARS HRH3 UQCRQ HTRA1 PPP2R4 GNG3 LGALS1 IFT52 GTF3A PSMD8 DSTN GNB1 INSIG1 MAP1LC3A PCMT1 PGRMC1 PGD SEC61G ACP1 MDH2 SEZ6L2 MT2A KCNAB1 PTN GABARAPL2 RAD23B TMSB4XP4 CMAS SNRPE TMEM258 WASL MORF4L2 SMIM13 TRAPPC1 FTL STK24 RAB3A SNX3 FXYD7 AES MGST3 SAP18 PNMA2 AK5 SCN7A LYPD6 PPDPF ARF1 GUK1 KCNAB2 COPE NDUFA11 YWHAQ CAPZB ETFB FBXO2 SYN1 ZNF365 C16ORF13 MT1X PCSK1N NIPA1 CFH NDUFA2 TOX3 CABP1 DCTN1 SYT5 NEXN TAGLN3 LMO4 PRKAR1A SSPN PACSIN1 CERS6 TLN2 WIF1 TSC22D4 PTGES3 CTDSP1 QDPR VSTM2A CLSTN1 TMEM230 RND3 ZNF804A TMEM35 RAMP1 YIPF3 MFSD6 DIRAS1 GRIP2 PCDHB4 SCN2B COX7A1 SLC24A3 C9ORF24 EHD3 SOX6 BEX1 GNG11 TOX2 COX8A INA SLC7A8 MAP2K2 NARS DNAJA1 PET100 TPGS2 UROS ATP5I CDC42SE2 PRPS1 GSK3A SEMA5A NDUFB2 SNCB MAP2K4 CNTN1 AP1S2 PDCD5 ITM2C AC011043.1 HMGCS1 TUBB3 RPL13A CMPK1 ITM2B MZT1 BASP1 CXXC4 RPL7 EPHA6 C12ORF49 CDK5R1 PLS3 DPYSL2 FKBP4 SLIT1 TSPO RPS27A RPL23A GLO1 FAM127A HBB CAMK4 ATP6V0D1 SARAF ISG15 RAP1GDS1 ATP5E ATG101 ADCY10P1 PTPRS PRDX2 FARSA SLC25A11 RPL11 LYNX1 SELT SUMO3 SLC6A17 WLS TPT1 UBC TMEM11 NEK7 TSPYL4 ACOT7 ATP5O TUBA1A SMIM12 TUBA4A IDI1 PLD3 TUBB EGR3 MTPN MAFB HS6ST3 RAB27B VDAC2 PDZRN4 EIF4G2 HTR7P1 MARCKS ALDOC BAG4 OAT SLC12A5 NRF1 RPS19BP1 TPRG1L SRP14 ETS2 PHYHIP ATP5F1 NDUFV1 PTPRN RHBDD2 MPP1 STMN3 CACNG3 COX7B APBB1 NPTN ELMO1 C4ORF3 WSB2 CYC1 AP2B1 ALDH5A1 RPS2 CADM2 VAT1L TAC1 NDUFS6 ABHD14A RASGRF1 ARL2BP RPL12 ARF5 SPOCK1 PPP1CB SH3RF1 ATP2B2 NKIRAS1 STX1B FAM71E1 DYNLT3 NEFH GMFB STMN4 GFAP CAMK2N2 STXBP6 CDS1 DNAJC4 RPL39 SUMO1 SLC9A9 IGF1 HAPLN4 SULF2 RPL26 CX3CL1 FAM96B SCD SEZ6L CRHBP UBA52 ZBTB39 MYRIP SYT11 H2AFZ NDUFB4 RP11-195F19.5 PPP2R1A MAPKAPK2 PTMA TCEB2 PSMA7 TM6SF1 RAB1A CCDC85B CHMP5 SLC17A7 C8ORF4 PPA1 HOMER1 C14ORF2 CCDC169 APOLD1 RELL2 RCAN2 GRIK3 IQCK STUB1 RRM2B CKLF SLC9A6 PID1 CLDND1 ALDOA C11ORF31 BSCL2 MIF CORT HBA2 NGRN HBA1 ATP6V1G2 AC244489.1 PCDHA9 PCDHA4 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-ND4 MT-CO1 SPARCL1 ATP1B1 MT-ND2 MTRNR2L1 SYT1 SNAP25 MT-ATP6 MT-ND3 MTATP6P1 GAD1 MT-ND1 CALM2 MTRNR2L12 PREPL MT-CYB RTN4 RP11-111M22.2 MTRNR2L6 RTN1 CLSTN1 ALDOC CALM1 NPPC HSP90AA1 ATP1A3 SCN1A SLC24A2 ATP2A2 APLP2 SNRPN ZNF385D CFH MAP1B PEBP1 DNER FAM134A CKB SNCB GABRA1 CNTN1 CADM2 COX7C SUMO3 SERINC1 SPOCK2 CALM3 PNMA2 PRKACB TSC22D1 RANBP1 STMN1 PVALB SOX6 NDFIP1 PTPRM SLC6A1 C14ORF2 TUBA1B STXBP1 TAC1 VAMP2 MAP1A ACTB EPDR1 CLU EPHA6 YWHAZ OXR1 MAP2K2 PRNP CHN1 C11ORF31 CAP2 RGS4 TRIM37 ATP6V1B2 LANCL1 KLHL5 TENM3 ALDH5A1 PAM GTF2H2C_2 DYNLL2 OCIAD1 APP GAD2 ZNF804A NCAM2 SCD5 SNCG SYN2 ERBB4 RPH3A PPP2R1A KCNC2 PACSIN1 ELAVL2 LIMK1 ATP2B2 EIF1AX TSPYL4 SOD1 RPL41 UQCR10 TMA7 MT-ND4L NAP1L2 TSPAN7 RAB6A RRAGA PTMA MTRNR2L8 SERPINI1 CNTNAP3 TUBB2A ARF5 SNAP91 COX7A2L TMEM59L ATP5E SLC22A17 VDAC3 VSNL1 MT-ND5 RPL37A PRKCE CFL1 NDUFA13 VSTM2A RASSF8 CYCS ACTR6 OXCT1 SNRNP25 SULT4A1 RTN3 FAIM2 PITHD1 ELAVL4 RAB3C ARHGAP35 UCHL1 YWHAG PCDHGA5 ATP5J2 PINK1 MORF4L2 UQCRH VSTM2L NEGR1 PGAM1 GLUL SLC38A1 NDUFB8 COX7A2 OAT FTL SPOCK1 TBCA VDAC1 SYN1 UHMK1 ARL6IP1 NFIA COX7B RPL36A SP9 TXNDC17 CYFIP2 KIF1A FTH1 MDH1 RPS27A FAM219A NPTN DNAJA1 PRDX3 NCEH1 NXPH1 HCN2 GAPDH STMN2 TSPYL1 RPL13 GRIN1 FAM3C PPP3CA NDUFS5 RHBDD2 GADD45GIP1 RAB3A BSG ATP5F1 ISCU COX6B1 EXTL2 PGD EIF1 MRPS21 ATP5A1 AES GNB1 OR6D1P ARF1 ATP5O CBX6 ATPAF1 ZNF385A NME1 PNKD MAFB PSMC1 SHD PFN2 RAB3IP POSTN GDI1 PPIA PKM FGF12 COX5B DCTN1 RPL17-C18ORF32 TSPAN11 ITM2B RPL35 DNAJC21 RAB3B SYTL2 IDS SERF2 RELN NGRN ATP6V0C RP11-20I23.1 KLC1 D4S234E ITFG1 CA11 ATP6V1E1 C8ORF4 THY1 MTHFS MAP7D2 PPP2R2C NGFRAP1 YAF2 LAMTOR1 MTX3 MTCH1 PRKAR1B PTK2B VAPB SULF1 LINGO1 CTSD C19ORF53 RNF11 SEMA4G PIEZO2 PPP2CB DUSP1 TMEM132C GOLIM4 SOX11 NEK7 COX6C HS6ST2 STUB1 QKI RAB1A PFN1 ATP5C1 ANAPC13 USMG5 IGSF21 UBA52 GPM6A CD63 UBC RPS15 ALK SKP1 ADCY10P1 RPL15 MAP7D1 SARAF TANC1 LAMTOR2 SCN1B DLD TUBB4A CCDC184 MT3 SLC25A5 NDUFB1 AP2M1 PPP2CA SMIM13 RP11-632C17__A.1 HSP90AB1 COA3 VPS35 FBXL16 GUCY1B3 TOLLIP RNF208 POMP TCEAL2 STX1A SCG2 ROBO2 PTGES3 RPS2 KIF3C BTBD11 DNM3 BASP1 PFDN1 C12ORF57 C4ORF3 MYO5B CHMP4B FBXL15 ATP5G2 COPE EID1 DRAP1 CHCHD2 KRAS RPL23A ATRN TPI1 TUBA4A NAP1L3 PDZD11 CLTB DDAH1 LPPR4 SPCS2 CAMK2N2 CDK5 EIF4A2 CEND1 DYNLRB1 NBL1 RPL39 HNRNPH2 MAST3 NDUFB5 CLIP3 MZT2B QDPR RAB2A OLFM1 GNG3 MAP1LC3A CDKN2AIPNL LAMTOR5 CCT5 CPLX2 RHEB TMX4 DYNLL1 EGFL7 ATP6V1A HINT1 CFL2 OLA1 TOMM20 KCNC3 C6ORF1 COX14 FLOT2 CAPZA2 NDUFB3 PGRMC1 REEP2 GSTT1 COX4I1 NDUFC1 PGM2L1 PI4KA TMSB4X PET100 PAFAH1B2 TENM1 ATP5B RAB5C SEPW1 PFKP NAP1L5 DSTN PSMC5 FKBP8 BEX1 SIRPA PCSK1N JAKMIP1 ARL8B NIPA1 MT2A RPL31 THYN1 TSPYL5 CDS1 WBSCR17 CAPNS1 SYNJ1 USP5 NUDT21 PITPNA CMAS EIF1B AP1S2 SCAMP5 TMEM155 COPS8 ATP6V1F CLTC DPP6 PTCHD4 CPE SCN2B ASB13 FSCN1 TCEB2 CPLX1 PIK3R1 PRUNE2 PPP2R2B PCDHB10 NAT8L PRDM1 CAMK2G ZNF703 ARL4C SYT13 PSD3 FABP5 RPL8 ARF3 PPIH CYB5R3 HCN1 RCAN2 CADM3 PELI3 CDK5R1 HS6ST3 UBE2N LMBRD2 GABARAPL1 STXBP6 MPP1 PFDN4 MRPL15 ACOT7 ATP1A1 RBX1 KCNAB1 APLP1 GNAQ RPS5 SOX2 C1ORF233 ACP1 NNAT RAP1GAP2 MMP24-AS1 HMP19 INSIG1 KIFAP3 RAB11A PEG10 PCDH15 LINC00116 PPM1A PHYHIPL GUCY1A3 H2AFZ SUB1 ANK1 C18ORF42 TMEM14A LMBR1 ZNF365 SLC1A2 THSD7A RPS10 INA SLC9A6 SYT17 COPS7A ENO2 PNMAL1 OAZ1 PEA15 CTBP1 KCNAB2 FKBP1A NDUFB4 NDRG4 TRAPPC1 ARHGDIG SYNGR3 TRIB2 ATP6V1C1 NARS NRCAM ARL6IP5 MAP2K4 ZFAND5 ACTR1A IFITM2 STMN4 UBL5 TUBB2B CCND1 MLF2 TERF2IP BCAT1 UBE2QL1 EPHB6 TUBB RPS28 RPL13A AC244489.1 CCDC144NL BSCL2 GABARAP RNASEK-C17ORF49 ATP6V1G2 PCDHAC1 PCDHA10 PCDHA9 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-ND4 MT-CO1 ATP1B1 MT-CYB MT-ATP6 SYT1 MAP1B SNAP25 SPARCL1 DNER MTRNR2L12 MT-ND3 MTRNR2L1 MT-ND2 MT-ND1 MTATP6P1 SNRPN FAIM2 NGFRAP1 NDRG4 ARL6IP1 ERBB4 CALM2 CALM3 ENO2 YWHAG SLC12A5 ATP1A3 GABARAPL1 GAD2 ACTG1 NAPB CPLX1 GAPDH GDI1 PRNP GOT1 SLC6A1 TSPYL1 MTRNR2L6 CITED2 LANCL1 CALM1 RTN4 HSP90AB1 SEZ6L2 TSC22D1 ATP5G3 ATP1A1 APLP2 NPTN UQCRB MORF4L1 PRKAR1A NCEH1 MTRNR2L8 HOMER3 VAMP2 PGAM1 SLC7A8 ATP2B2 PRKACB ATP2A2 SLC24A2 GABRA1 INA MAP4 NAP1L3 ZNF385D CLSTN1 TAC1 ATP6V1F TSPAN7 YWHAZ MT-ND5 CYCS GRIN2A DNM3 ATP6V1A KCNAB2 CYFIP2 APLP1 KCNAB1 DCLK1 STMN2 GAD1 ATP5A1 HSP90AA1 SUMO2 APP SPOCK3 CNTN1 ARL8B NAT8L MAPRE2 SERINC1 RTN3 PPP2R1A PVALB NAP1L5 TMEM130 SERINC3 NEFH SEPT4 TENM3 ARL6IP5 SEPW1 BEX1 MT-ND4L PPIA STXBP1 PPP1CB PLS3 DNAJB6 OSTN PTPRM ZNF536 ARHGAP35 CDKN2D HMP19 SULT4A1 VSTM2A PRKCE VSTM2L CEND1 MAGED2 FTH1 NDFIP1 MAP1LC3B MAP7D2 SPOCK1 PREPL RPS28 PARM1 VDAC3 CKB SNAP91 SLC9A6 IQSEC1 PEBP1 TUBA1B PSAP RGS4 STMN1 CHN1 VSNL1 STMN3 CLTA KCNA2 ITM2B ATP5B KIF1A OAT TMA7 YWHAB RAN OAZ1 CTSD TMSB4X CALN1 IDH3A PCMT1 RAB3A SERP2 NMNAT2 BASP1 SCD5 PPIF TOMM20 RP11-111M22.2 SCAMP5 FGF12 CADM2 FKBP1A AP1S2 ELMO1 SLC38A1 SARAF CKLF PPP2CA LBH DEXI ELAVL2 MDH2 TERF2IP COX4I1 FSCN1 NTN4 KCNK1 VAMP1 HRH3 PCSK1N FAM127A RPL32 CFL1 RPL35 OPCML SEZ6L MAPK1 PKM CDH7 TAGLN3 UTRN NIPA1 RRM2B IDS ALDH5A1 MTPN FARSA PFDN4 CCDC184 GNG3 D4S234E CPE TUBB4A TM2D3 PAM KLC2 NPPC ANXA7 EPB41L3 SUB1 VPS35 PEA15 CRKL SYNGR3 COX7A2L MAFB CDS1 FNDC4 CLIP3 RAMP1 ARPC4 CERS6 ETV5 RAB40B BSG BNIP3 PGRMC1 RAB3C SKP1 PCP4L1 RHEB MORF4L2 NFE2L1 PPP3CB NDUFB8 RTN1 PPP3CA KCNC2 NXPH1 AP2M1 SYT13 PITHD1 PSMD12 GNB1 SYT11 CD99L2 RNF11 PNMA2 JUND GPX4 LGI3 SLC39A10 NCDN ARHGDIG APBB1 GRIN1 GPM6A GHITM NGRN ATP6V1G2 RHBDD2 NRCAM TUBA1A PEX5L COPS8 MAGED1 GSKIP NFIA DYNLL2 INCENP UBQLN2 TPPP DYNC1I1 DLD P2RX6P RPL13A NDUFV1 CAPNS1 OLFM1 CCT5 RPL37A ANK1 ETV1 PSMA7 NRIP3 TPI1 ADSS UBE2QL1 AES RP11-345J4.4 NAPA NAA38 TMTC1 STK39 ARL1 INPP5F TCEB1 EFR3A CRYM BANF1 AP1S1 COX8A TMEM59L MAF ARPP19 CRHBP TMEM151A NDUFA2 CDK5R1 ECM1 SYNGR1 PPM1A ADAMTS17 RPS10 DLX1 SPOCK2 FXYD6 NCAM2 LIMK1 RPL15 HAPLN4 HIGD1A TMEM35 MZT1 CLTC NEFL DCTN1 PDCD5 WNT5A UQCRH PLCXD3 RPS2 GPRC5B RAB6B IFI6 ALDOC DUSP1 TUBB3 NDUFB10 RAB2A SRP9 CLSTN2 MSMO1 ATP6V1G1 RPS12 COX6C DKK3 COPRS KLC1 CHMP4B GNAQ COX7B ERH TMEM155 TMEM230 PSD3 SRP14 SH3BGRL3 RPL11 DPP6 ARL4C WSB2 UHMK1 ACTR6 TUBA4A CYP2R1 TSPYL4 TUBB2A SMIM13 NDUFA4 FAM174A SCN1A ARF5 MYO1B RCAN2 CAB39 CBX6 UBC HTR2A VDAC2 SERF2 RELL2 CD63 TRIM37 ELOVL7 PNMA1 TRIM35 PTCHD4 ATP6V0C QKI CDC42SE2 TBCB CLTB SDCBP KIAA1045 HCN1 CAMK2N2 LDHB RASGRF2 PGK1 PIK3R1 RAP2A MGST3 MPPED1 SYT2 NDUFA8 MTCH1 WBSCR17 CLPTM1 TMEM160 CA8 RPS4X EDIL3 OXR1 NEFM MAP1LC3A SELT GABARAP AKAP12 ATP6V1B2 NDUFA5 HINT1 COX5B PNKD FKBP4 ATP6V0D1 RAB1A SOX6 ATP5I CLIP2 ATP5E UCHL1 SLC6A17 OLFM2 INSIG1 DPYSL2 YJEFN3 TCEA2 PRPS1 OXCT1 UQCRQ SNRNP25 GLUL RPL10A FTL RAB7A SNCA CACNA2D2 CORT NREP DNAJB9 NUAK1 ATRN CNTNAP5 TOLLIP MRPS7 CAMK2D FKBP7 PPA1 CAP2 CDK14 AP2B1 FAM19A2 CAMKK2 ACTB MYL6 PPP2R2B PNMAL2 PTMA PPP2CB SSBP3 MPI RFK TIMP3 CAPZB NCOA4 PCP4 DMTN SYN2 CDK5R2 NEGR1 ZFAND5 MRPS21 TCEB2 BTBD11 FAM131B NHP2L1 TM6SF1 MAP1A RPL12 SLC22A17 PSMC1 PRKCB TCEAL7 GRIK3 CNR1 UQCRC1 NDRG3 C11ORF96 UBE2F CDH22 COTL1 AP3S1 NARS BCL11B SOD1 RP11-20I23.1 PAFAH1B2 GSK3A CISD1 EIF1B SLC25A4 NDUFB5 DYNLRB1 C18ORF21 PACSIN1 ACLY PCYT2 SYT3 TRMT112 RPH3A TMEM132C CMAS C19ORF43 SLC32A1 MRFAP1 CLDND1 TPGS2 ZNF385A THY1 HS6ST3 SPRYD3 PFN2 MDH1 ITFG1 ACTR1A SUMO1 SNX10 RPS19BP1 LYNX1 KIAA1211 CSDE1 NDUFC2 PPP3R1 CAMK2G GPX1 TUBB4B PJA2 SOX11 PTPRN2 RPL36A RELN RAB3B NSF SYTL2 GTF2H2C_2 MIF GPR98 RPL21 PCDHGA10 PCDHGA5 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MTRNR2L12 MT-CO2 MT-CO3 MT-CO1 ZNF385D MT-ATP6 MT-ND3 SNAP25 TBC1D15 SERINC1 RTN3 MTRNR2L1 MTRNR2L8 NAP1L5 PEBP1 MAP1B MT-ND1 PPP2R4 CYCS APP GPM6A KLHL5 PGRMC1 MAP1A GSK3A RAB3C PPP3CA CNTNAP3 PRKCB SYT1 RTN4 KLC1 TUBD1 TF CALM1 NFIA CDH7 SOX6 ARFGAP2 BIRC5 GTF2H2C_2 PLEKHD1 GUCY1A3 NAT8L NPTXR STMN3 STMN1 CHP1 SNAP91 CYP2R1 ZNF804A CLTC CAMK4 EIF4G2 MKX TMSB4X ARPP19 ARX ACP1 PPP1CB NDUFA5 MTND1P23 LMBRD2 PAQR9 LHX6 TMX4 VAMP2 SYN2 SLC25A11 RAB6A CBX6 CLSTN1 SELT ATP5J YWHAH MORF4L1 ACTB BEX4 SLC25A4 PPARGC1A FTH1 ATP1B1 OCIAD1 PSD3 ARL8B SYT3 TPPP RPL39 PKM MYO16 TSPYL4 ALDH5A1 LANCL1 GOLIM4 AP1S2 TAC1 ATP5E CLU APLP2 SPARCL1 AK5 UQCRH SEZ6L2 ERBB4 HCN1 ITFG1 PNKD YAF2 FBXW11 SYT13 TOX2 SPTY2D1-AS1 PPP2R2C PCDHGA6 DYNLL2 CADM2 RAB6B TGOLN2 RGS12 PPP2R2B BAG4 MT2A CTNNB1 ANXA6 SHARPIN MT-ND2 CYC1 CDHR1 NKAIN4 SAMM50 TENM1 RAB3IP CALM2 VPS35 FAIM2 RPS4X MOBP EIF1AX DNER PSMD8 ATP5A1 RP11-111M22.2 TERF2IP C12ORF57 INA PTPRN ARL6IP5 ZFAND5 GUCY1B3 UBE2QL1 MAPRE2 ZNF536 HSP90AA1 CNTN1 BCAP31 MT-ND5 MAST3 UBB TCEB1 MAF OXR1 KCNC2 TUBB2A TTN SSBP3 ATP6V0E2 EPHA6 STX1B RAPGEF5 GRIK1 NDUFA8 UROD MARCKS STMN2 YWHAQ GOT1 SLC24A2 VSNL1 RAB27B SLC1A2 NEFM MZT1 ANXA7 SPOCK3 SERINC3 UQCRC2 OR6D1P MTRNR2L6 RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SYTL2 ATP1B1 TBC1D15 TSPAN7 SNAP25 HNRNPA1P40 RAB3B HTR1F THSD7A SPARCL1 HSP90AA1 DNER MAP1B CLSTN1 ATP1A1 NDN ARL6IP1 SLC22A17 ATP5E NGFRAP1 CFL1 CNTNAP3 SEPW1 KCNC2 ITM2C HSP90AB1 TMSB4X ECM1 MAF TMA7 RPL36A STXBP1 B3GNT1 ARL6IP5 ARHGAP29 SLC6A1 GPM6A QKI CRH FAIM2 ZNF385D PLEKHD1 BIRC5 NDUFA8 RTN1 TM2D3 ENO2 ITM2B NAPA PKM ATP6AP2 ITFG1 COL15A1 POLR2K FTH1 CSDE1 BSN TENM1 SCD5 GNAQ SULT4A1 ARHGAP35 SLC1A2 BASP1 CRIP2 RPS27A GAP43 VSTM2A KCNA2 SLC39A10 SEPT4 OXR1 HTRA1 CFH CLIP3 PLS3 MT-CO1 RPS26 APP NAT8L C16ORF13 RPL11 LRRIQ1 PARM1 MRPL33 C11ORF31 WBSCR17 CDR2L TMSB4XP4 DPYSL2 DLD SPRYD3 BANF1 USP5 NOV LMO4 COA3 CYCS MT-ND2 RPS12 CEND1 SLC38A1 DYNLL1 MTCH1 RP11-195F19.5 SPOCK2 RPL37A RND3 NDUFA13 ATP5G3 MME SCG2 NACC2 CCK RAB3IP KLHL5 TPI1 COX7C CD59 MSMO1 CALN1 SLIT1 ATP9A ARL4C DLC1 PSMC5 RTN3 SERINC3 QDPR PHB ZNF536 PHPT1 EPB41L3 CAMK2G NDUFB2 ALDH5A1 REEP5 SNCA RP11-20I23.1 ATP1A3 ATP5C1 CFL2 PRKAR1A LAMTOR5 NPPC SERINC1 TUBB2B SYT13 BCAT1 BNIP3 TMTC1 CLU CCDC69 RPL13A ATP1B2 RPL21 ATP6V0C CDKN2D OAZ1 PLEKHH2 ANXA6 TOX2 VSTM2L YWHAZ UBE2QL1 FAM134A YWHAQ COL21A1 FSCN1 NDUFB1 LDOC1L CADM3 NAPB TLR1 VDAC3 COL12A1 JUN LGI2 COL11A1 MANBAL CDK17 OLFM1 ATP5A1 TMEM120A ERBB4 ATP6V0E2 CAMK2N2 REEP2 SRP14 BEX4 APLP2 PSMB3 PRNP TMEM35 MT-ND4 VAMP2 RP11-111M22.2 RPL39 RAB4A RPL41 TKT ASAP1 COX5B HMP19 CALM2 TOMM7 RAB3C PTCHD4 SLC9A9 NAP1L2 C2ORF47 NARS PNMA1 YWHAH RABAC1 CLTB TMSB10 PPP3CA PEBP1 GMPR KLHDC3 CALM1 TMEM158 IDS RNASEK-C17ORF49 NGRN AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 SPARCL1 ATP1A3 TAC1 SYT1 CHN1 RAB3B MTRNR2L1 EIF4A2 SNAP25 ATP6V1B2 CALM2 ATP6V0E2 MT-CO1 RPL31 TSPYL1 SLC1A2 RPL23A PNMA2 PGAM1 NAPB SLC22A17 CLTA CFL1 RPL11 MT-ATP6 PGK1 CADM3 CAMK2N2 TERF2IP VSNL1 YWHAH TMEM130 SLC9A6 ELAVL4 SERINC1 CAMK2G NPTN KCNC2 SEPW1 RAB3IP SERPINI1 TUBA1B FGF12 UBE2V2 NGFRAP1 CLIP3 PCMT1 MT-ND3 CLSTN1 PGM2L1 BSN RTN1 CX3CL1 GAD2 RPL7 REPS2 TMEM59L C14ORF2 RPL39 CLDND1 RPL32 RPL3 PTPRS NDFIP1 NPTXR RHEB STMN1 TSPYL4 SARAF OXR1 RPL38 SDC2 DNM3 GRINA ARL6IP1 BEX2 ATP2B2 NCEH1 RGS4 KCNAB3 MT-CO2 PPIA MT-ND4 GAD1 CALM3 NECAB1 OAZ1 SCN1A MAF PKM RP11-111M22.2 MT-CO3 MT3 ERBB4 CHGB FAIM2 CDS1 PI4KA COX6A1 KCNAB2 PRNP DCLK1 NDRG4 PCDHA4 NARS CABP1 RPS15 ZNF385D NR1I3 CTBP1 NXPH2 RPL13 LIN7B LMO4 BANF1 PTCHD4 HAPLN4 NUDT4 ASCL1 PET100 SNCB SCN4B YWHAG CKB NDUFA12 PIP5K1B NRGN ENO2 MT-CYB ROBO2 BTBD11 PFDN4 STX1B NPPC ZMAT2 KCNK1 RCAN2 DLL3 ENO1 RASGRF2 MPPED1 SLC6A17 UQCRQ CYFIP2 FTL NDUFA13 UQCRH CADM2 PINK1 OCIAD1 RBX1 NDUFA4 SERTM1 APLP1 CDKN2AIPNL TMEM14A ATP5E SAP18 SERF2 COX6C SYN2 VSTM2A UQCRC1 NDUFB11 KCNA2 RTN3 RPL41 ALDOC KLHL13 C16ORF13 RAB6B WBSCR17 SYNGR1 TRHDE PEBP1 ATP5G1 WBP2 SYNGR3 PRKACB SCG2 ACTR10 TMA7 C4ORF3 NRF1 SLC25A5 MARCKS KIF5A PHPT1 COX7B BIRC5 PPM1A SYN1 PTPRZ1 SPOCK3 MAST3 ATP5I HSP90AB1 GRIN3A WNT16 RPL37A ITM2C TKT MYRFL DNER CA11 RGCC VPS35 PPTC7 SLC6A1 ATP5G2 SYNPR NDUFB10 OLFM1 TCEAL7 ATP6AP2 NOS1 ARX TGOLN2 RPS6 SLC12A5 ANKRD18A GUK1 UBL5 CTNNA3 GSK3A RPL36A GLUL CLTB PNMAL2 SLC7A8 HDLBP EIF1B TIMP2 BCL11B DEXI PLCD1 SLC17A7 TMEM70 DPYSL2 DMTN CD99L2 EIF1 PJA2 MT-ND2 COX7C NDUFA11 YWHAZ ANK1 GTF3A LANCL1 CHMP5 KLHL5 B3GNT1 FBXW11 GABARAPL1 BEX1 ATP5J IDI1 FAM84A STK39 PPARGC1A TOMM34 BCKDHB ALCAM CBX6 UBE2D2 EFR3A GNAQ FKBP7 NAT8L ARL1 TPPP ITFG1 CDK5R2 CPLX1 PLCXD3 PPP2R2B SLIT1 ARL6IP5 EDF1 PCDH19 MTFP1 ATP5F1 SYT4 RPL6 PPP2CB NCDN GABRA1 INPP5F MAP1B SOD1 UBA52 ACTR6 ARL8A SCN7A SSTR2 FAM131B TUBD1 TSC22D1 SLC2A1 TUBA4A UBA1 PLD3 KIF21A DPP6 UBE2QL1 TPT1 COX6B1 TCEA2 CNTN1 CDH13 NDUFV1 MT1X NDUFC1 NUDT21 STRAP FLT3 ATPAF1 ATP1B2 ACTB TENM3 TMEM150C CDK14 MRPL12 ACTG1 SNRPN NDFIP2 SRM KCNA1 UBE2E3 HMP19 PTPRT IQCK DYNLRB1 PRDX2 DLD RPL35 FAM3C CCK TUBB2A PTPN20A NIPA1 NELL2 KLC1 PLCH1 SYT11 ATP2B4 STMN2 INA ERH DYNLL2 EDIL3 RPL13A ARPC5L RPS12 OLA1 VAMP2 MAP4 DDAH1 ABHD14A CFL2 STMN3 REEP5 PCSK9 NDUFC2 ISCU NDUFB5 PPP1CB IDH3A GPX4 SLC25A22 WLS NDUFB7 TMOD2 C8ORF4 PGRMC1 FAM163B POLR2L CEND1 GOT1 RPL17-C18ORF32 SKP1 RPL17 NGRN NSF BSCL2 FTH1 ATP6V0C MTRNR2L6 TUBB3 ARF5 RP11-20I23.1 RNASEK-C17ORF49\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D CFH ERBB4 KCNAB1 BSG KCNAB2 SNAP25 SLC6A1 CALM2 ATP1A3 SPOCK2 ATP1B1 TOMM7 ANK1 RPL38 GPM6A SLC24A2 ARL6IP1 UQCRB RPL8 WBP2 MTRNR2L12 PEBP1 TMEM130 VSTM2A PRKAR1A SRP14 HSP90AA1 RPL37A SYT1 VAMP1 ENO2 FAM3C FGF12 HSP90AB1 ATP5B GNG3 GAD1 SEZ6L2 TMA7 BSN DNAJC21 TBC1D15 RAB3B SYTL2 NUP37 NDUFB3 KCNAB3 NREP CDC37 PGAM1 CYC1 CLTC ATG9B TENM3 YWHAH SARAF ITFG1 CTBP1 NDUFS5 NACC2 CALM1 MEGF11 GAPDH SERP2 PI4KA ACTB STMN1 NAPB LIMK1 RTN1 TPD52 TCEAL2 EIF1AX GRIN1 PSD3 MFN2 BCAT1 GABARAPL1 RUNX2 EIF4A2 MAPK1 BTBD10 DCLK1 EXTL2 ATP5H MT3 FAM127A ARPP19 TMEM230 CCDC25 MAP2K1 CRHBP RPL13 DNAJC4 KCTD12 NXPH1 CCK MAP1LC3B ADAM23 PTPRS ARHGAP35 C1ORF56 PCSK1N MT-ND1 OAT PPP3CA FTH1 ZNF385A S100A10 TM2D3 MAGED2 KCNA2 GRIN2A TOPORS-AS1 TBCA PTCHD4 NEGR1 AES RPS4X UHMK1 ZBTB18 AP2M1 MBP SAMM50 MFSD6 CAPNS1 SLC12A5 FAM19A2 SEC61G APLP2 CLU GPX4 TSPYL1 TMOD2 GDI1 SPCS2 YWHAZ TENM1 CHN1 PPP1CB RPL32 YWHAQ RTN4 SLN TUBA1B VSNL1 PHYHIP RPL21 MTRNR2L1 ENSA EFNB1 CYFIP2 TPRG1L MAP1B SPARCL1 RPL26 NDUFB7 EPHA6 DPYSL2 PITHD1 GOLIM4 SCD5 RAB6C-AS1 ELAVL4 RBX1 RPS3A ATP1A1 CKB DNAJB6 TLE4 PNMA1 MT-ND2 EPB41L3 COX6B1 INPP5F DCN SOD1 GABARAP GRIP2 NDUFA13 REEP5 MAP1LC3A JUND UBE2V2 SH3BGRL3 STMN3 ATP5I RP11-111M22.2 TAC3 RASGRF2 VAMP2 SUB1 WDR47 PCDH19 ROBO2 PNMA2 TPI1 NRGN KIAA1045 AIMP2 TCEB1 SDCBP MT-CO1 FBXW11 UBA52 PFKP ELAVL2 BIRC5 PIP5K1B MT-CO2 VDAC3 PRNP KCNA1 NDFIP1 ACTG1 COX7B COX5B MRPL12 NEFL ANXA6 YWHAG HK1 CFL2 COX6C EFR3A CX3CL1 STXBP6 PTPRT HINT1 C1ORF52 NDUFA2 CSDE1 PRKACB SAP18 MIF MTRNR2L6 RPL13A SSTR2 RPL26L1 ARF5 TUBB ATP6V1G2 MBOAT7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MTRNR2L1 MT-CO2 MT-ND2 MTRNR2L12 MT-ATP6 SNAP25 MT-CYB MT-ND3 MTRNR2L6 MT-ND1 MT-ND4L MTATP6P1 RPL31 TRHDE ETV1 MTRNR2L8 AP1S2 SCN3B NCOA4 SCN1A RAB3IP RELN CDH6 SLC24A2 HFM1 SLC22A17 DCLK1 BEX2 THOC7 PCDHA4 DCTN1 BTBD10 MRPL55 STMN1 NGEF PNMA2 SLC25A11 CNTNAP3 CHL1 ANK1 KCNC2 ERBB4 DYNLL2 NRCAM LMBRD2 QKI HNRNPA1P40 PPP3CA TMEM59L SLC6A1 GNG2 RPL37A SPOCK1 MTND2P28 HSPA4 IGF1 CDK5R1 RTN4 RASGRF2 ARL6IP1 UQCRQ STK31 CPLX2 GRIN2A RAB27B NGFRAP1 TSPAN7 DNAJB6 ENO2 PLD3 GPM6A OR6D1P PRDX3 FBXW11 SKAP2 OLFM2 CHRM2 PAM RPS15 MAP1B RCAN2 CPE PPP2R2C TMEM35 PFKP TBC1D15 IDS ATP6V0C RPL26 RP11-20I23.1 DNAJC21 ARFGAP2 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC6A1 GAD1 ATP1B1 SYTL2 RAB3B APLP2 KCNC2 RP11-111M22.2 SLC24A2 SPARCL1 ARFGAP2 FTH1 CNTN1 ATP1A3 VSTM2L ERBB4 RPL41 RTN4 NDFIP1 MAGED1 CLSTN1 STMN4 RNF11 PLCB1 MAP1B RPL23A PGK1 SYT1 TOX3 TIMP2 SPOCK3 ZNF385D YWHAG CHN1 GDA ALDOC MT-ND1 ATP5G2 PEA15 ATP5J2 NGFRAP1 PHYHIPL HMP19 ARL6IP1 SERINC3 PVRL1 USMG5 SYNJ1 RND3 TUBA1B ENO2 EIF4G2 ATP9A COX4I1 NEGR1 RTN3 HAPLN4 GADD45GIP1 UQCR11 NDUFB10 C1QL1 GHITM ATP6V1A STMN3 YIPF1 PCBP1 SLC22A17 RPL13 BRICD5 MAF SLC12A5 ADD2 RPL21 DYNLL1 SMS GRIN2A CTBP1 VPS35 RAB3IP NDUFA13 TSPYL4 HINT1 IQSEC1 SEZ6L2 TOMM7 BCL11B MDH2 NBL1 SCOC MT-CYB TUBB4B PLD5 RHBDD2 SUMO3 GPM6A TSPYL1 CLDND1 MTRNR2L6 CAPZB NAPB RANBP1 RTN1 SEPT4 CPE NOS2 AP3S1 KCNAB1 CNTNAP3 ARF1 MTRNR2L1 RAB1A NDUFS5 CDC42SE2 ATP5B MRAS RAD23B TOX LPPR4 FAM134A ARL4C RAB6B RPL12 CTNNB1 RPS12 SLC39A3 CLTC PPIA PNMAL2 FAM19A2 HSPE1 SIRPA UQCRH ATP1A1 PIN1 NDUFC1 SERINC1 B3GNT1 ATP2A2 GABRA1 HDLBP SLC7A8 AZIN1 RAB11A IDS GLUL PTPRN2 PPP2R4 RPL13A GPR56 KCNMB4 TMEM130 TPGS2 RAPGEF5 BASP1 HSP90AB1 NCOA4 ATP6V0C GABARAP RP11-20I23.1 HNRNPA1P40 PLEKHD1 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 ATP1B1 MTRNR2L1 MT-CO2 MTRNR2L12 MT-ND4 HOMER1 MT-ATP6 PEBP1 CALM1 GAD1 SYN2 SYT1 ZNF385D RAB3B RP11-111M22.2 OXR1 YWHAB ATP5A1 KLHL5 KLC1 MAP1B MT-CO3 GAD2 RAB6A KCNAB2 CACNA2D2 ENO2 MT-CYB ELAVL4 RPS6 MTRNR2L6 CFH SCN1A VEGFA TCEAL7 TMSB4X ECM1 SPOCK3 UQCRH SULF1 SNX3 OAT COX4I1 SRP9 VSNL1 HK1 ELAVL2 OLA1 TSPYL1 FARSA ITFG1 NCALD DLX6 COL12A1 TAGLN3 NDUFA12 SCN2B DLC1 SPARCL1 MT-ND2 D4S234E SPTY2D1-AS1 VPS35 CHL1 MYO1B BAALC NDFIP1 PSAP PCDHB11 PCDH15 MFSD6 NRSN2 FBXO40 DPP6 DNAJB6 RPL26 PRNP EIF4G2 F3 TPD52 WNT16 TUBA4A MT-ND4L SLC6A1 GPR150 SNRPN GAPDH PGK1 TSPAN7 SPOCK1 PNMA2 RTN4 RPL32 ACTB ARHGAP35 RNF11 NRIP3 RPL11 MED31 RPL39 ARX PIP5K1B LGI2 APP FAIM2 DNER TSPYL4 LAMTOR5 RHBDD2 PRIM1 SARAF RPL13 ERBB4 NUDT21 TMEM132C STMN3 UQCRB SLC12A5 PAM SCAMP5 MT-ND3 SERINC1 HSPA8 ATP6AP2 SKP1 PLCXD2 STMN2 UBB H2AFZ SNAP25 CABP1 PGAM1 CLSTN1 GPATCH4 LPPR4 KIF21A YWHAG LGI3 EFR3A QKI SERPINI1 TMEM130 ESYT1 MAF MDH1 CAB39 TCEAL2 MYL12B PLCB1 C3ORF80 BEX1 HGF COBLL1 DNAJA1 VAV3 CALM3 TUBA1B NPTX1 CDK5R1 SLITRK1 PJA2 MGST3 BANF1 ACP1 FAM127A CLU RPS27A MTATP6P1 IGSF21 ARF5 RPL17 ARFGAP2 PPIA RP11-20I23.1 RPL17-C18ORF32 ATP6V0C NSF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 RTN3 SYT1 GAD2 RAB3B SNAP25 NAPB STMN4 FTH1 VAMP2 ARL6IP1 TSPYL5 GAD1 HOMER3 RPS15 NARS KIFAP3 VSTM2A ANK1 GAPDH CDH7 FAIM2 MRFAP1 ASPDH SLC6A17 ARL8B CALM1 MT-ND4L NRIP3 CLEC2L RHBDD2 TAC1 HMP19 PDP1 RRAGA RPL38 MBP HSPB1 SNRPE RHOB DRAP1 CNTNAP3 RPL39 DNER NDUFA4 RPL31 RPL15 CALM3 DPYSL2 EIF4G2 CTBP1 STMN2 CDK5R2 ZFAND4 SPARCL1 RPS28 RPL36A TPPP NAP1L3 PEBP1 RPL35 BEX5 UROD CFL1 VEGFA NTN4 FAM19A2 ADAM23 SUB1 STX1B SLC24A2 FKBP1A RPL26 AP1S2 PSAP HCN1 COX4I1 ATP6V0B RAB6A DLX1 MAP1B GABARAPL1 OR6D1P RNF11 COX8A DNAJC6 NPTXR UQCR10 IQCK CLSTN2 ARL4C C12ORF57 GRIN2A CADM2 DUSP1 SULT4A1 GNAQ ZNF385D TF BIRC5 PVALB IDS RPL41 ALDOA ZNF343 RPL21 NGRN ATP1A1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "PVALB-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST RAB3C MT-CO3 GAD2 MT-ND4 SYT1 ITM2B MT-CO1 APP SCN3B GAD1 NELL2 MT-ND2 RPL41 GRIK1 NDUFB1 PEBP1 SNAP25 DCC DKK3 CDH13 GPM6A RTN4 SYNPR COX7C FXYD6 NEGR1 PRKACB FAM96B RHOB NGFRAP1 NREP VDAC3 DLX1 MAGED2 SLC6A1 PCDHB10 UTRN CDK14 MAF TSPYL1 CDS1 D4S234E PRKCB SPOCK1 STX1A ELTD1 SERINC3 SCD5 CXXC4 UBE2D2 UCHL1 TRAPPC1 TMSB10 GDE1 RTN1 YWHAG ALDOC ETFB PPA1 PHPT1 GOT2 RPL38 C6ORF141 ATP5A1 GPR126 NAPB ITM2C YWHAH MAG BIRC5 MT-ND1 LGALS1 SRP9 FAM131B CALM1 SARAF RPS6 NTN4 ARPC4 APLP2 CDC37 HSPE1 ABHD14A ATP5G3 ATRN PFKFB4 COL25A1 WARS RPL18A ARL4C CADM3 CYCS SYTL2 MRPS7 KIF5A NAT8L TM2D3 AP1S1 OXR1 FNDC4 SYN2 RAN PTRF PPIA GTF2H2C_2 SYT11 INSIG1 HSP90AB1 PIK3R1 SLC6A17 PREPL SPOCK2 CLTA NRIP3 EID1 CAMK2N2 KLC1 GDI1 TERF2IP MRPL33 SERINC1 ALK NDN CHADL MAP1B RAD23B GPX1 RPL37A STMN2 RP11-111M22.2 ATP5B EIF1B CLDND2 TMEM65 CRKL DYNLL2 SYT4 TMSB4X FAM163B CHL1 CPLX1 VSTM2A CLIP2 GSK3A RPL35 SNN RPL7 MTUS1 RPL21 MT-ND3 CLSTN1 NPTN UBC NPTX2 PRKCG ATP2B2 MAPRE2 PNMAL1 KRT17 HNRNPA1P40 RP11-20I23.1 ATP6V0C IDS NR1I3 ANKRD18A ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SST MT-CO3 SNAP25 NGFRAP1 MT-ND3 RPL38 BIRC5 SPARCL1 EIF4A2 ATP5J CLSTN1 MT-ND4 SYT1 HFM1 C11ORF31 PGAM1 RTN4 TMEM130 HNRNPA1P40 MT-CO2 RPL12 RPL13 UQCRC1 TOMM7 VAMP2 SUB1 GAP43 UQCRH DPYSL2 ATP2A2 ACTB PAM SLC12A5 MT-ATP6 ATP5I RPL23A RP11-195F19.5 YWHAH SKAP2 DYNLL1 UQCR10 TMA7 PPP3CB RPL21 ALDOC COX7C ITM2B RPL31 MBP GAD1 SYNPR RAB3B STMN2 KCNK1 GABARAPL1 CBX6 CFL1 ALDH5A1 PLCB1 PSMC5 ATP1A1 TMEM230 CDS1 PEX5L NCDN SLC6A1 EIF1B ARX ANK1 MUM1L1 SKP1 FAM131B ATP6V1A LIMK1 BANF1 STMN1 HPN ZFAND5 SCN1A GABARAPL2 MRPL55 PLAC8L1 B3GNT1 NUAK1 HK1 MTRNR2L1 ARF3 REEP2 GRIN1 RTN3 SLC24A3 CREG2 SERPINI1 PGK1 MT-CYB APP FBXL16 RNASEK-C17ORF49 RPL32 ATP6V0C MPPED1 RAB3IP TCEAL3 GPM6A EFCAB13 SLC38A1 PREPL GDI1 RTN1 BEX2 CDK5R2 PET100 STMN4 FAT3 GPR37L1 CHN1 OLA1 PVRL2 ADSS TXNDC17 TAGLN3 ATP6V1G1 CHRM2 PGRMC1 NAP1L3 NCOA4 NDFIP1 KCNC2 COX8A NDUFA4 PPP3R1 TRIM37 PLD3 LDHB AURKAIP1 CTNND2 FBXO2 GAPDH FTL UCHL1 OCIAD1 SIGIRR VSTM2A CHL1 RP11-20I23.1 PDLIM5 MYEOV2 UBA1 RAN TMEM59L RPS6 BMP3 BAI2 RPS15 TUBA1A MTRNR2L8 RPL13A RPS12 ALCAM NAA38 MT-ND2 ADD2 COMMD6 MORF4L1 ARHGDIG KRT17 SLC24A2 RPL37A MAP1B SPOCK3 PSMC1 PSMB5 ATP5F1 CLTC NDUFB1 PJA2 PFDN1 TMEM88 MTRNR2L12 STXBP1 TOLLIP UROS PFN2 FAM131C RHOB PRKACB TSPAN7 HSP90AB1 COX14 CDC37 ATP1A3 TM2D3 ATP6V1B2 MAGEL2 SNRPN RPL26 MRFAP1 OXR1 YWHAQ NDUFB4 EPB41L3 FGF12 FKBP4 NRIP3 CALM3 MDH1 FKBP1A TBCA GADD45GIP1 UBE2D2 CLDND2 CYFIP2 IDS SERINC1 ELMO1 CERS6 NSF TERF2IP SEPT4 SUMO1 ENO1 AP2S1 SCAMP5 RPL15 OR6D1P EPHB6 FTH1 CORT NR1I3 NUDT21 ALDOA MIF CFH TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ELFN1 ATP1B1 OR6D1P KLHL5 GDI1 SYNPR EPHB6 PJA2 GRIK1 SYT1 RAB3B MTRNR2L1 ATP1A3 CALM3 GPM6A CLSTN1 INPP5F GTF3A EIF1B NDFIP1 KCNC2 APP STMN3 PGRMC1 NPAS3 ITFG1 GAD2 GAP43 TMSB4X KLC1 PDCD5 IDS TBC1D15 RTN1 MRPL33 LDHB SNAP25 RASGRF2 CLTC LIMK1 SEC61G OAZ1 ANAPC11 PPP2R2C GRIN1 ITM2B STRAP PGK1 PRKACB LANCL1 FKBP1B GABRA1 HNRNPH2 WBSCR17 CDHR1 CYFIP2 YWHAZ BNIP3 CPE STXBP1 TNNT1 CALM2 CDR2L PREPL SLC22A17 TPT1 PPA1 NXPH1 ATP1A1 CSDE1 LINC00087 RP11-111M22.2 VAMP2 DLL3 ARL6IP1 PRKCB NDRG4 HINT1 RELL2 MTPN PRDX3 GSK3A RPS10 MORF4L1 TUBA1B TOLLIP MAP1B RPL26 NRIP3 ATP5J INHBB DNAJB6 C2ORF80 ARL6IP5 NPTXR LL0XNC01-16G2.1 RPS28 OPRM1 GRIN3A NCEH1 LYNX1 PRKCG RPL23A CCK DNAJA1 PTPRN ARL4C BSG PEBP1 PPP2CA CALM1 ACTB GABRG1 TRPT1 C14ORF2 ARL2BP ACTR6 ESYT1 ARL8B UBL4A RANBP1 SNRPN SERF2 STMN2 RTN3 ETV5 TUBB2A NEGR1 HAPLN4 PDE1A NREP FAM84A OXR1 CACNA2D2 CYP26A1 GAPDH MANBAL NAP1L5 DPY19L1 RPL7 ABRACL RRS1 TMEM150C MMD CHMP5 ATP6V1E1 ATP6V1B2 TMEM14A RTN4 PAM RPL7P38 RPL41 ERH FXYD6 STX1A GNB1 ANXA6 MAFB UBL5 PPIA VCAN NRGN LRRC59 CCDC154 TMEM132D COL6A4P2 RAB6A MAP1LC3A SSUH2 FAM219A BCAP31 ARPC5L RP11-219A15.1 RELN NGRN CORT RP11-20I23.1 SPCS2 ATP6V0C EEF1A2 MIF TF DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST MT-CO1 MT-CO3 FXYD6 TRHDE SYT1 RAB3B EPHB6 MT-CO2 RTN4 RPL37A PIK3R1 SNAP25 GPATCH4 SLC6A1 MPPED1 SYNPR MT-ND1 ATP5G3 MT-ND4 GPM6A ARL6IP1 TENM1 PRNP PTGES3 CYB5R3 RHBDD2 FARSA APBB1 EFHD2 PDP1 MFN2 WASF1 VSTM2L SCN3B RPL6 RPL23A DPP6 PPA1 RPL17 TUBB2A BEX1 DNER COX7A2 NDUFA1 MAP1B CYFIP2 PNOC SCN1A THY1 MAP1LC3A EIF4A2 NDUFA2 ACTB RELN PTPRS TPT1 ARPP19 TCEAL2 NRGN LAMTOR5 PSMC3 SOX6 CADM2 ARPC5L FAIM2 STMN1 GTF2H2C_2 CAMK2D FIBP NEFL GAD1 LMO4 APP RPL3 PIEZO2 OXR1 STMN3 EGFL7 BEX4 HOMER1 ATP6V1A ITM2C FAM127A CPLX1 RPL15 APLP1 EFR3A TGOLN2 RPL7 RPL38 CRTAC1 SYT13 VGF MTHFS PPIA GRIK3 DRAP1 TXLNB SNCB RPS15 SLC22A17 CX3CL1 DNAJA1 TMEM59L LIMK1 RPL13A PEBP1 GRIK1 PVRL2 UROD RP11-111M22.2 BIRC5 CHST8 GABARAPL2 YWHAG SPRYD3 RBX1 ANGPT2 WLS NRF1 SERF2 RP11-219A15.1 NGRN RPL41 IDS OR6D1P DNAJC21 TBC1D15 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL37A GRIK1 TBC1D15 SST UBC SEPT4 GAPDH NDRG4 PRKCE EPHB6 RPL3 SARAF CADM3 STMN1 NDUFB10 CKB RAB3B TF NEGR1 CHGB ELFN1 PARM1 TMX4 REEP5 RPS28 MAPK8IP2 NDUFS5 SLC17A7 TMOD2 PNOC ACOT7 UCHL1 GPM6A PINK1 FAIM2 NDFIP1 OR6D1P ATP6V1F ARL8A TLN2 PPP2R2C VDAC1 ATP6AP1 ETV1 TSPYL1 CYCS SLC19A1 RNASEK-C17ORF49 TPI1 NRGN EIF4A2 GRINA SLC24A2 SERINC3 SYT1 PTGES3 TMEM200C TRIM37 DOCK10 RPL12 LINC01296 RAB2A TUBB2B ATP1B1 MRPL55 PDCD5 PEX5L TMEM120A WBP11 LAMTOR5 CAPZB PGAM1 YWHAG YIPF3 PDE1A MPPED1 RCAN3 HINT1 ARL6IP1 RPL7 COX5B GAD2 KIF21A UQCRFS1 GAD1 TMEM59L NDUFAF2 TSPYL4 CHN1 RPS3A AP2S1 CALM2 SNAP25 WBP2 MAP1A MT-ND1 NUTF2 ITFG1 ATP5I PTPRN2 WDR47 ARFGAP2 RP11-20I23.1 ANKRD18A BSCL2 PSMB3 ATP6V0C NGRN ALDOA RPL41 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 ATP1B1 SCG2 GPM6A SNAP25 RPL26 SOX6 MTRNR2L12 RPL35 PPP2R2B ARL4C ATP2A2 CALM2 MT-CO2 CFH SYT1 RPL12 MYO5B RPL8 SST RTN4 APP USMG5 RPL3 ARL6IP5 MT-ND2 MTRNR2L8 OR6D1P UQCRH UCHL1 MT-ATP6 ATP5I CALM1 SYT4 EIF4A2 NAP1L3 BAD PEA15 RPS27A SPARCL1 SCN3B QKI PGM2L1 RTN3 EIF4G2 ZFAND5 TM2D3 COX5A AES SCAMP5 IDS AP2B1 PGAM1 ASAP1 TAC1 ETS1 LL0XNC01-16G2.1 OCIAD1 GPX4 CORT RCAN2 LAMTOR5 DNM3 PEG10 AP2M1 FAT3 COL25A1 SNRPN RAP1GAP2 COX7A2L SAMM50 UBE2V2 RPL37A CCDC25 BTBD11 LDB2 CKB HTR2C C16ORF13 GHITM SLC10A4 BIRC5 BEX4 MT-CO3 ITFG1 UQCRQ VDAC1 RPS26 ATP5A1 FTH1 ATP5J2 MAP7D1 RPL32 CACNB1 PRKCG RPS4X CKS2 RBX1 TAGLN3 HNRNPH2 RRAGA CDH8 HINT1 EID1 RPL39 ACTG1 COL6A1 AZIN1 APBB1 GREM2 MMP24-AS1 OXR1 CLSTN1 AK5 HAPLN4 RPL38 MT-ND3 KCNF1 TMSB4XP4 GAD1 ATP6AP2 ROBO2 LGI3 ERBB4 ARF3 VPS35 NIPA1 IQSEC1 COX5B APLP2 MDH1 HSP90AA1 CHL1 ACTR1A ALDOC MRFAP1 LIG1 TUBB2A TMX4 MAP1LC3A GOT1 CDK5R2 CAMK2D GRIK1 CBLN4 SRP14 PEBP1 GPCPD1 C11ORF31 CAPZB VEGFA RGS4 TPT1 PSAP TALDO1 RP11-111M22.2 ATG9B PPP1R7 RNASE1 NPTX2 RPL41 MT-ND1 TSC22D1 RPL31 CHN1 TSPAN7 ARF1 TSPYL5 ALDH5A1 PIP5K1B EYA4 RND3 CDC42SE2 NCDN ARPP19 ATP6V0E2 RAB11A FAM127A SUB1 CCDC184 NRGN TPI1 CTSD DLL3 INHBB NR1I3 CALB1 RPS5 MYL6 TPRG1L MAGEH1 LBH YWHAG RPL13A NEGR1 NGFRAP1 PRKACB CLTC CDC37 DRAP1 PSMA7 ITM2B PACSIN1 TMEM130 SPOCK1 POLR2K KLHL12 YWHAQ ATP1A1 DPYSL2 TERF2IP MORN2 NDUFAB1 CLU PINK1 TMSB4X FREM2 PDP1 PRNP MORF4L2 CD59 ATP6V1G2 PCDHAC1 PCDHA10 PCDHA4 PCDHA9 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L12 MT-ND4 MT-ND1 MT-CO2 MTRNR2L1 MT-ATP6 MT-CYB MT-ND2 MT-ND3 MTATP6P1 MTRNR2L8 MT-ND5 MTRNR2L6 MT-ND4L SYT1 SNAP25 GPM6A MAP1B PPP3CB RPL37A APP PREPL PTMA IDS GRIK1 RPS28 JUND PPP2CB ATP2A2 NRIP3 SLC38A1 RELN ROBO2 LMO4 KLHL5 CALM1 OLFM2 NXPH1 RPL13A SUMO1 SPARCL1 RPL15 GABRA1 MAP1A STX1B CYCS ATP5J SST HSP90AB1 CDK5R1 NGFRAP1 PEG10 TMSB4X CFH CADM2 RPL13 ENC1 SLC22A17 CISD1 NREP RPS27A SLC12A5 PSMB5 DYNLL2 VSNL1 TOMM20 RNF212 DNAJC5 FXYD6 GRIN1 PEBP1 C6ORF1 UQCRH NR2F2 COX7C ARL6IP1 CBX6 NEGR1 SLC1A2 KCTD12 ANK1 PTGES3 RPL17P50 SYT4 MFSD6 CREG2 PDE1A RAB3B SH3GL2 MTND1P23 EFHD2 TM2D3 PRDX3 SPTBN1 CHN1 ENO2 CAPZB PINK1 PPP3CA EIF1B SYNPR GDI1 TMEM130 CCDC25 NDUFB11 ARF3 CCDC85B DNAI1 RAB3A SNRPN PKM ATP1A1 WASL S100A13 ATP2B4 CLMN RTN3 SYT13 ARL6IP5 HMGCS1 TMA7 PCDHGA6 MAL2 RPS19BP1 RPL41 ATP5F1 PRKCE SPCS2 KCNC2 WDR47 PTPRT NFE2L1 MAFB MBOAT7 NDUFS5 TSPAN7 SCAMP5 YWHAZ TMX4 TIMP2 DCN CHMP4B DUSP4 PRKAR1B ISCU PPARGC1A ALCAM ABHD8 SPOCK3 FSCN1 PFN2 FAIM2 SYTL2 SMS CKB ACTG1 SAP18 RND3 CDC42SE2 NECAB1 CAMK4 NAPA TMOD2 FAM19A1 ADAMTS17 PRNP CLTB NDFIP1 CAP2 EPHA6 PSD3 PCSK1N IDH3A REPS2 PHB IQSEC1 ELFN1 OCIAD1 SRP14 GABARAPL2 ITM2B PSMB7 UBA1 PCDHA10 LDHB FAT3 RAB31 SYN2 PJA2 ALDOC C11ORF84 RPS6 ELAVL4 APBB1 HEY1 TUBA1B STUB1 ELAVL2 PARM1 SPHKAP CDK14 PPDPF OPRK1 NAT8L ARL4C DPP6 NDRG4 CMPK1 KCNAB2 PIN1 SNX17 CPLX1 BEX1 NCEH1 SARAF AURKAIP1 CLSTN1 LYSMD2 RNF11 ATP5B STMN1 SLC39A10 ACTB ARHGAP35 BASP1 TBCB CNTN1 SDHAF1 GUK1 TUBB3 GTF2H2C_2 TUBB AC244489.1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ATP6 SYT1 MT-ND1 MT-ND4 MT-CO2 MT-CYB MT-ND3 MT-ND2 ZNF385D MTRNR2L12 HSP90AA1 SST MTRNR2L1 PRKACB CADM2 RAB3B ATP1B1 TMA7 TTN CHN1 GAD1 CFH SRM CLSTN1 QKI DNER SCN1A SYT11 KIF21A SNRPN DNAJB9 OXR1 PDE1C PEBP1 GDI1 RPL13A RASGRF2 PLCH1 TM2D3 SPARCL1 PPP2CB KCNA2 RTN1 FXYD6 CADM3 CALM1 YWHAZ MTRNR2L8 APP GABARAPL2 STXBP6 C1ORF52 TENM1 CALM2 CDH7 ATP5B RTN4 BASP1 MT-ND4L ITM2B RPL21 CLU TRHDE NR1I3 CDK14 INPP5F TRAPPC1 PNKP GPM6A LDHB MTATP6P1 YBEY TMSB4X CASP7 WBP11 SUB1 MYL6 CPE DNAJB6 ATP5A1 DMTN NAT8L COX7C UBE2E3 POU3F1 DBNDD1 TSPYL4 RABAC1 RPS27A SKP1 MTRNR2L6 ABHD14A OLFM2 GRINA PGK1 SEPW1 SLC32A1 NRSN2 APLP1 COX7A2L SLC24A2 C19ORF70 SCD5 EIF4A2 CALM3 RPL12 REEP5 SYN1 SNAP25 PREPL COX14 SARAF CDH13 PNMA2 ARL2BP COL12A1 GNB1 COL25A1 TCEAL5 GRIK3 ZFAND5 APBB1 TUBA1B UTRN SLC7A1 SLC9A6 NPTXR RTN3 CAPZB SEZ6L2 GALNT14 SYNGR1 PNMAL1 SELT NRIP3 RNF11 DNM3 KIF1A SERINC1 SYNPR PJA2 ITM2C KCNC2 CLTC ELAVL4 TMEM130 CLTB STMN4 GAD2 PPIF CDK5R1 AES EEF1A2 AP2M1 ENOPH1 DYNLT3 NDUFB7 ENO2 IDS SLC1A2 TERF2IP NDFIP1 HILPDA COL20A1 ZNF365 RPL23A RCAN3 HSP90AB1 DPYSL2 LAP3 MAP2K4 PET100 COX17 DNAJA1 SCAMP5 RRM2B NDN PRDX1 BEX1 YWHAQ PLP1 COX5B NDRG4 CX3CL1 RHBDD2 GABARAPL1 MARCKS TCEB2 NGFRAP1 DUSP1 HK1 RPL37A FLT3 RGS4 NREP RPL3 TMTC4 HMP19 NAP1L3 EFR3A HFM1 GRIN1 UCHL1 PRLR FRMD4B UQCRC2 ADD2 TLE4 PHB NPTN PGRMC1 GRIK1 PPP3R1 GRIP2 TCEB1 PLCB1 TLE6 DLX1 SSPN ATP6V1A NCDN LPPR4 SRD5A1 NDUFA4 SUMO2 NTN4 SLC38A1 PRUNE2 CAMKK2 CNR1 RPL13 UQCRB RELN MT-ND5 MORF4L1 MARCKSL1 RNASEK-C17ORF49 BIRC5 NSF B2M SSTR2 PCDHGA10 PCDHGA5 PCDHGA6 DNAJC21 TBC1D15 SYTL2 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST SYT1 MT-ATP6 TMEM160 MT-ND4 ZNF385D RAB3B CALM1 ARX SNAP25 CFH NXPH1 ITFG1 TMEM35 CDH7 SPTBN1 ITM2C GABPB1 PGAM1 MT-CO2 MTRNR2L12 CHL1 PPP3CA C1QL1 RPL39 TUBB2A MTATP6P1 DCTN1 TOX ATP1B2 EIF1AX CDK5R2 QKI YWHAB ATP1B1 TMEM130 PELI2 COX6B1 PPM1A CPNE2 ZFAND5 SNCA SERPINI1 SYT11 LCNL1 RAB5C DYNLT3 FRMD4B MTRNR2L1 DNER PCDHAC1 TMTC1 GOT1 MAL2 CDC42SE2 COX7A2L NDFIP1 SIRPA MAP4 ADARB2 DYNLRB1 CYFIP2 APP TAF7L AP2M1 TCEB1 SYNPO NDRG4 CSDE1 MT-CO1 TLN2 TRHDE AP2B1 RPL23A SYT4 MLLT11 MT-ND2 NDUFB5 FAIM2 GNAQ SCN1A C14ORF2 TENM1 BCAP31 PGRMC1 THSD7A RPL38 SYT5 DNAJC6 PFKP RPL18A VDAC1 PTCHD4 TOPORS-AS1 BSG TMSB10 HS6ST3 RAB6A APLP2 PKM GRAMD3 DIRAS2 TAGLN3 KIF5A LAMTOR5 PTMA KIF3C TUBA4A SEMA4G SYNPR MAPRE3 YWHAZ PSD3 DLX1 PREPL NPTN GNB1 RPL6 AES SLC39A10 SLC38A1 WDR47 PTPRZ1 RTN1 LDOC1 PRNP IQSEC1 SYN1 CALB1 EPHA6 DYNC1I1 CNTN1 ENSA ATP2A2 MRPS21 PNMAL1 CAP2 DYNLL2 C10ORF10 KCNA2 SYNGR3 BEX4 TMEM200C PRKACB MAP2K4 HSP90AB1 ARL6IP1 KLHL5 RTN3 RP4-635A23.4 SCAMP5 ALDOA NSF MIF CAMK2G TUBB AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM1 MT-CO3 MT-CO1 ATP1B1 MT-CO2 PPP3CA CALM2 SEPW1 MT-ND2 MAP1B MT-ND3 MT-ND4 MT-ATP6 CCK SNAP25 SCN1A TMSB10 MTRNR2L1 PSD3 RPS4X NDUFA13 C11ORF31 MAP1A PRNP THY1 ARPP19 TSPAN7 RPS28 TUBA1B TMSB4X DDAH1 BASP1 MTATP6P1 MARCKS CPLX2 RNF11 PLCB1 DIRAS2 HSP90AB1 PPP1CB PRKCB POLR2J MORF4L1 NUAK1 YWHAH KCNK1 EIF4A2 FAM134A NOP10 EIF4G2 ABHD14A RPL38 ZFAND5 CLSTN1 RTN3 MT-CYB CHRDL1 MT-ND1 GMFB ATP6AP2 MAP2K1 PGRMC1 YWHAB SNRPN GRIK3 FAM84A CYFIP2 SNN NECAB1 DCTN1 HMGCR GUK1 KCNA1 GPR116 FGF12 TPGS2 MTCH1 SEZ6 BSN ALKBH7 NDST4 OCIAD1 RNF152 HOPX PRKAR1B CLSTN2 SARAF COX6A1 NPTXR RPS27A TSPYL1 AP1S1 POLR2I MT-ND5 CREG2 ATP2A2 ATP9A ROBO2 IDS CAP2 SELT PEBP1 CADPS2 TSC22D1 MAPK1 TENM3 ATP6V0D1 SYT1 PACSIN1 PDP1 AK5 PAK1 CD24 SPARCL1 LGI3 FAIM2 DNAJC6 KLC2 PARM1 TERF2IP RPL11 RAB2A EPS15 DDN SYNGR1 NXPH1 DKK3 CPNE8 SST NDUFAB1 CAMKK2 OPA1 HEY1 ANAPC13 EIF1AX ARL6IP1 TMA7 LAMP5 GHITM LZTS1 ENC1 SPRYD3 RHOA NRGN RASGRF2 BEX2 SCN3B RHOB ARL6IP5 CDC42SE2 C19ORF10 ATP6V1A DEXI MAP7D1 DYNLL1 FAM96B MFN2 SUB1 TMEM230 HSP90AA1 SUMO2 ATP6V1G2 WSB2 PPP2R1A VSNL1 TRIM37 CTSD KLHDC3 PRKACB ETFB SLC39A10 RAB11FIP5 ENOPH1 MAP2K4 TCEB1 NRN1 TGOLN2 MIF AP3S1 RPL36A SERF2 MTRNR2L6 NUDT4 RP11-219A15.1 PCDHA4 PCDHA9 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 PDCD5 THY1 RPL31 TMSB4X DNM3 SYT1 KLHL5 RPS27A ACTB RPL7 RPL26 MAP1LC3A HSP90AA1 RPL32 PTPRN ARF5 RPL38 RPL41 GAPDH RPL6 RTN3 EIF1 DKK3 SST GRIK3 SPARCL1 USP5 KCNMB4 ENO2 VGF MRPL37 SLC7A8 COL25A1 BTBD10 MTCH1 RPL37A RHBDD2 WLS EHD3 TAC1 KCNF1 FNDC4 POLR2L RPL17 SNRPN CCND1 RAB11FIP5 SYT11 AP2S1 MAP1B SPOCK2 PPP2R2C NDRG3 YAF2 COX6B1 ALCAM RAB11A CLU FKBP1B ACTR6 CHGB SNCB ARPC4 ATP2B4 FBXO2 PEX5L COPRS FAM219A NDUFA13 COTL1 ITM2B CAMK2G IGF1 PNMAL1 CHN1 RPL10A RGS12 NAPB CALM3 RPS15 RAB6B IQSEC1 RPL39 APLP1 FTL UBC SNAP25 ATP5E RP11-51O6.1 TBCA ATP5B ATP5F1 RPS4X PCMT1 NDUFA4 ARL8A PRNP NUPR1L PEBP1 NAT8L RGS5 TRMT112 IDS ATP2A2 FRMD4B PPIA TMTC4 LPPR4 MDH1 SPP1 PLAUR KCNAB3 CALM1 TMOD2 RASGRF1 USMG5 ATP5A1 ATP6V0E2 PNKD EPHA6 GPM6A C16ORF13 RPS19BP1 SLC25A5 CLDND1 TMEM130 ATP5J2 TMEM150C ARFGAP2 EID1 CAMKK2 MT3 NDFIP1 CD59 DYNLT3 PGAM1 HPCA YWHAH RPL23A BSN GDI1 TSPYL4 VDAC2 CAPZB SARAF PSMD8 FLOT2 CACNA2D2 KLC1 ATP1A3 PIN1 RPL36A RP11-570P14.1 SERP2 RAP1GAP2 CTD-2020K17.4 GOT1 BAD WASF1 CNTNAP3 ACTG1 UQCRB FXYD6 SYN2 COX6A1 LINGO1 TMEM200C PCSK1N EFHD2 FGF12 CHCHD2 PRELID1 FAM71E1 MMP24-AS1 DNAJB6 TMEM59L FLT3 SNRPE SOX6 UBB DNAJA1 BEX2 ANKRD20A11P NDUFB2 UBE2M OAT OAZ1 FKBP8 CDH24 STXBP1 CX3CL1 GRIK1 RPL13A MRPS28 CORT NSF CFH TUBB3 BSCL2 OR6D1P PCDHGA6 PCDHGA5 PCDHGA10 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 TMSB4X MT-CO3 SLC6A1 MT-CO2 SNAP25 MT-CO1 PRNP ENO2 MAP1B CCK PTCHD4 PRKACB MT-ND4 KIT ZNF385A PCDHGA5 NDFIP1 RPL31 ATP1A1 CALM2 SPTBN1 PKM MT-CYB PRDX5 GRIN1 SCN1A MAP1LC3B ATP1B1 FXYD6 CEND1 ARL4C MT-ND2 FTH1 CALM1 RPL41 PJA2 NRCAM PRDX2 STX1B GABARAPL1 ATP5F1 PPDPF PSAP GLUL RPL11 SYN2 NECAB1 ID2 EDF1 RPL15 PTMA YWHAH APP FKBP4 CDKN2D BCL11B RPL38 RTN3 RPL17-C18ORF32 GAD2 MAPK8IP2 NPTXR CD99L2 NAPB FAIM2 VDAC3 TPT1 CHGB SERINC1 PNMA2 MAP2K4 BASP1 GAPDH PTPRS CALM3 VSNL1 MAF NAP1L3 HSPA8 OCIAD1 SLC22A17 FBXL16 YWHAB VAMP2 MAFB LANCL1 PPIA DNAJC21 TBC1D15 MAGED2 TUBD1 RELL2 ATP6V0B PINK1 CST3 MYO16 KIF5A GYG1 RPL3 KIF21A CFL1 NOP10 ARL6IP5 SPARCL1 RCAN2 NDUFAF2 ALDOC BEX2 TUBA4A MAL2 EIF4A2 PEX5L MTATP6P1 RAB1A DCTN3 ARHGAP35 LPPR4 SELT TEX15 PLAC9 KCNC2 ZCCHC12 TENM1 TMEM59L TMEM255A B3GNT1 WDR47 MIR6723 COX17 PPP1CB SSTR2 RPS19BP1 RSL24D1 LDHB TMEM158 SRP14 JAKMIP1 ITM2B SLC25A22 NHP2L1 ENSA RPL13A GOT1 STMN1 EIF4G2 YAF2 MORF4L2 PEA15 TUBA1B ARHGAP29 ARL6IP1 NRF1 COX5A SCOC DPYSL2 YWHAZ C1D KCNH5 ATP6V1A RPS28 PGK1 AP2M1 TUBB2A TMEM130 ARF1 FXYD7 GNAQ DNAJC5 RTN1 TSPYL1 CLIP3 NDUFA8 SNCB NDUFA1 PLD3 CALN1 TPI1 INSIG1 MT-ND3 MORF4L1 BCAT1 GABARAPL2 C1QL1 PACSIN1 SEZ6L2 IDS NFIA MRPL55 DKK3 RRAGA COX7A1 EPB41L3 NFE2L1 OAZ1 KLC1 SCAMP5 TMSB10 SLC38A1 NUAK1 ACTG1 NDFIP2 TRMT112 TSC22D1 RPL32 PEBP1 PCSK1N MT-ATP6 CAMK2D KCNAB1 SCD5 PTPRT ZNF536 RPL39 RPS3A BAG4 NGFRAP1 TOLLIP SLIT1 LMBRD2 PPP2CB NAT8L UQCRB TOMM20 RAP1GDS1 MAP1A OPA1 NEFL VAMP1 NDRG4 PAK1 RAB3IP ADD2 UCHL1 NMNAT2 SFRP1 DYNLL1 FOXO1 CXXC4 TOX3 UBB TEX2 AES COX6A1 UQCR10 ATP2A2 SEPW1 SEMA4G MSMO1 PMEPA1 EFCAB10 TMEM141 MTRNR2L8 DEXI RBX1 THOC7 DNM3 ZMAT2 NDUFS5 GAD1 ATP6V1G1 SKP1 ATP1B2 PCMT1 RPL37A DCAF12L2 OSMR CPLX1 CAP2 REPS2 FTL ATP5G1 GAP43 NRIP3 ATP5E SUMO1 NOS1 SUB1 NAP1L5 DNAJC6 CDH13 UQCRQ HCN2 ZFAND5 HSP90AB1 WSB2 RPL13 PTPRM RTN4 POMP DYNC1I1 PDGFD GRINA TMEM164 HAPLN1 KIF1A MAP7D2 ATP1A3 TIMP2 GRIN2A BCAP31 BEX5 COX6B1 CTBP1 HMGCS1 HSP90AA1 NPTX1 MTRNR2L12 RAB3B ZNF385D SYTL2 ALDOA PSMB3 RPL21 SERF2 CFH RP11-20I23.1 ATP6V0C ARF5 RNASEK-C17ORF49 TUBB3 TUBB PCDHA4 PCDHAC1 PCDHA9 PCDHA10 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 BIRC5 RTN3 RAB3B GABRG1 RPL35 SNAP25 HNRNPA1P40 ZNF385D SST CLSTN1 PTCHD4 RPL41 CHN1 HSP90AB1 RPL21 SYT11 RTN1 INPP5F CDH13 PPP2R2B STMN2 RPL37A WFS1 KIF5A CDK5 CDK14 UCHL1 PRKCG GRIN3A SLIT1 SRD5A1 TSPAN7 IQSEC1 APLP2 THY1 SERINC1 TOMM7 SNX10 SYNGR1 NPAS3 TRHDE BRK1 RPS15 NDUFC2 COX5B RPL10A GTF2H2C_2 NR1I3 KLHL5 KCNMB4 ATP6V0E2 MT-ND4 MFSD6 GPM6A ATP5G3 ATP6V0D1 SYT4 DNER STMN4 LL0XNC01-16G2.1 PGD RAB7A NECAB1 C14ORF2 TSPYL4 DNAJB6 HMGCR ISOC1 ATP6V1F DCLK1 TGOLN2 PNKD CACNA2D2 APP NDUFC1 RABAC1 GDA QKI CCK RPL13A TMEM141 SKP1 ZFAND5 CKB PCP4 PPP3CA UQCRC2 ELAVL2 ARL8A PLCH1 FLOT2 BEX5 MT-CYB UTRN SPOCK1 DIRAS2 DIRAS1 TERF2IP SERPINE2 CARNS1 PEA15 PPP2R2C TIMP2 ARL6IP1 TRIM36 RAB3IP PRDX1 ATRN NDUFAF3 CA4 SNRPN KLC1 MRPL55 FAM84A REEP5 ATP5O DNM3 CLU ATP5G2 THOC7 SLC25A4 USMG5 PGK1 FTL CDH8 PPP2R1A TEX2 CSDE1 SLC1A3 ENC1 PNMAL1 CDC42SE2 MT-CO1 SEMA4G TMEM59L FXYD6 RPL13 PCSK1N MZT2B C1ORF115 PPP2CB OXR1 CHRM2 ARF3 ATP1A1 EPHB6 PCDHA4 VWC2L UQCRB C3ORF80 MYL6 ATP1B1 EIF4A2 RPS28 RPL32 MAPK8IP2 SPOCK3 CADM2 RHBDD2 HSP90AA1 RP11-111M22.2 KLHL12 MT-CO3 RTN4 MAP1LC3A NPTN PLCB1 RNF11 C6ORF1 GFRA2 MARCKSL1 PMEPA1 KCNC2 TTN GAP43 RAB11A RPL11 RGS12 ITM2C WBSCR17 GAD2 GDI1 LRRC39 NRGN SEPW1 NPTXR SPARCL1 BEX2 CAPZA2 RPL23A ALDOC SLC24A2 CCDC74A APLP1 FAM131B HDDC2 C18ORF32 RPL3 RP11-20I23.1 NGRN RPL17-C18ORF32 ATP6V0C RPL6 B2M RNASEK-C17ORF49 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPARCL1 TSPAN7 CLU CHN1 GRIK1 SYTL2 RAB3B RPL6 NDUFB1 KLHL5 FAIM2 TOMM7 SYT1 RPL35 UQCRB RPL17 RPL31 KCNC2 RPL36A UROD PLCB1 RPL32 ITM2B SST TUBA1B SYT17 HNRNPA1P40 ARFGAP2 NPTN NPTX1 ARHGDIA RAB6B OST4 SNCG RPL23A PRNP PRDX2 RPL37A CCDC25 MT-ND4 CBX6 APP VSTM2L MAPK8IP2 ENO2 NPTXR RPL8 NRSN2 MYL6 NBL1 NRCAM PKM TMSB4X CDK5R1 NRGN RAB34 RPS2 THSD7A CYFIP2 DPP6 PNMA2 PPAPDC1A MTCH1 KIF3C ISG15 SNAP25 PSMB5 NDUFA13 VSNL1 PPP3CA EPHB6 GAD1 DDN OCIAD1 RAB3IP RPS28 STX1A NAT8L GPM6A COX6B1 TCEB1 RPS27A PDE1C TPPP CLTC PREPL UROS COX8A CCT5 MRPL55 WASF1 CSDE1 COX6C REEP5 ROBO2 CDH8 MAP2K1 RHBDD2 EPS15 RTN3 NRIP3 PCDH15 RPL13A SPOCK1 NDRG4 NDUFB2 GRIN1 CRTAC1 THY1 DNM3 LANCL1 RPS3A RPS6 ENSA GOT2 MAFB RP11-111M22.2 COL6A1 RP11-20I23.1 PSAP ADD2 PEBP1 GRIP2 ELAVL2 ATP6V0C CDS1 RAB1A TUBD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 ZNF385D MT-CO2 MTRNR2L12 MT-ND4 MT-ND1 SNAP25 MT-CYB SST PEBP1 ATP1B1 RAB3C TSPYL1 RAB3B CAMK2G TSPAN7 TCEA2 STMN1 GRIN1 MAP1B C1ORF52 CADM2 PRKACB NDFIP1 NTN4 CDK14 SLC24A2 SCN1A MT-ND3 GAD2 TBC1D15 TF CSDE1 MARCKSL1 COPRS CLSTN1 CORT RPS27A NR1I3 ATP6V1B2 EPB41L3 EIF4A2 UCHL1 BEX2 RPL35 GAP43 CLU CDH8 TMSB4X AP2S1 TCEAL3 KLHL5 SYT1 DPY19L1 TMX4 GHITM GAD1 PRKCB MAP1LC3B PPTC7 CKB COX7A2L NAT8L PLSCR1 EIF1AX RPL15 SCAMP5 SELT KIAA1024 EFR3A PTPRZ1 MTATP6P1 MTG1 RPL7 FAM89A STRAP ELFN1 STMN4 TERF2IP LGI3 TTN NEGR1 SMAP2 YWHAH YJEFN3 VAMP2 RANBP1 PRNP ARL6IP5 CLDND1 MAP2K1 CLTA TOMM20 CNTNAP5 COA3 SUB1 PRKAR1B CAMK2D FABP5 NDUFA4L2 NCBP2-AS2 LANCL1 ATP9A UQCRH PIEZO2 KLC1 ZBTB20 GTF2H2C_2 KCNAB3 DCLK1 APP NDUFA4 TRHDE MTRNR2L1 RASGEF1B MAPRE3 RCAN2 SALL2 EIF1 CALM1 SLC9A9 RLIM CALM3 VSTM2L NDUFA11 DNAJA1 VGF MT-ATP6 NDUFB4 TBCA AES TMEM59L PTPRN ACTG1 APLP2 NREP GRIK3 SLC6A1 RTN4 CDK5R2 CALM2 MAP7D2 RPS15 REEP5 C6ORF1 MTRNR2L8 PSMD12 MAP1A TCEAL7 EID1 OLFM2 PREPL D4S234E S100A10 MT-ND2 OXR1 HMGCR MT-ND5 RPL13 SERINC1 CD99L2 HGF TMEM65 MARCKS PNMA2 TOMM7 ATP6V1A RP11-219A15.1 IDS MTRNR2L6 NGRN DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 COX7C TMSB4X RPS15 MT-CO1 SNAP25 RPS27A GAD1 NDRG4 ARL4C IQSEC1 CSDE1 ATP6V0C RP11-20I23.1 MORF4L1 RPL13A EIF4A2 CALM3 BEX2 MT-CYB FTH1 GRIN2A SCAMP5 CALM2 ATP6V0B RPL41 RPL37A NAP1L2 TUBA1A SOX11 SERINC1 RPL6 APP HMGCS1 SYN2 USMG5 DPYSL2 SNRPN PPIA PRKACB MTRNR2L12 RPL31 ATP2A2 TMA7 RTN3 ATP5O PPP1R7 MYL12B BCL11B PPDPF MAF SPCS2 ATP1B1 PRDX5 GRIK1 COX4I1 HTR2C PSMB5 PLD3 THY1 CHL1 TOMM20 EID1 NAP1L3 OLFM2 ACTG1 NXPH2 CYFIP2 NDUFA12 ATP6V1C1 GDI1 TERF2IP APLP1 POLR2L COX6A1 ARL6IP5 RHOA SYT17 STMN4 MAPK1 NDUFS6 MT-CO2 LANCL1 NDUFA4 NDUFB10 GPR171 SERF2 RAB6B FAM84A TOMM7 CLTA EDF1 THSD7A CLU EFNB1 SLC12A5 CKB NDFIP2 PITHD1 ERBB4 OR6D1P PET100 PTMA PGM2L1 JUN NGFRAP1 RNASEK-C17ORF49 MT-ND4 COPS7A RPL23A B3GNT1 SPARCL1 MT-ND1 PPA1 TLN2 TUBB4A CHN1 TUBB2B ARHGAP35 ATP5E RPS6 RPL21 DGKG GNAQ RPL10A GNG3 JUND TUBB2A C1ORF52 CLTC TCEB1 BSCL2 FAM174A PRDX1 PPP3CA HDLBP ATP6V0E2 SKP1 CCDC184 CHCHD2 ZFAND5 GPR158 MT-ATP6 SERPINF1 SYT1 OAZ1 PNMA2 YWHAG ATP1A1 MGST3 MT-ND2 NDUFA2 HSP90AA1 PRNP PIK3R1 SCN3B SLC25A6 ATP6V1A COX8A CNTROB RP11-111M22.2 ROBO2 CNR1 NOP10 MRFAP1 POLR2J PREPL GPM6A SERINC3 SST GPX4 BASP1 MTATP6P1 PTPRT NDUFB1 ZBTB20 TAF7L CLIP3 INPP5F UBA1 TMSB10 PPP2R2B TMEM130 MAPRE3 CMAHP MAP4 SYTL2 RAB3B ZNF385D ESCO2 DNAJC21 TBC1D15 RPS28 C20ORF24 MTRNR2L6 IDS MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST SYTL2 ELAVL2 NDUFA13 RGS4 RPL37A PCDH19 CLSTN1 GDI1 PRKACB CALM2 SNAP25 TSPAN7 ENO2 NHP2L1 RPL15 NPTXR OXR1 CEND1 APP SYNPR PSAP ETV5 VAMP2 FAIM2 PAK1 CREG2 CDK17 TMSB4X TPI1 LL0XNC01-16G2.1 TOMM7 NDUFA4 SNRPN RTN3 KLC1 GPM6A EGFL7 THY1 PAM PTPRM TMEM59L CSRP1 COX6B1 RPL26L1 RPS6 GYG1 TANC1 STXBP1 COL6A1 CALM1 FGF12 NAP1L2 ATP2A2 NAPA NDRG4 ISCA1 SCN1A PPP2CB RAB6A TMA7 SPARCL1 MLLT11 ATP1A3 DLX1 SHD SIRPA MT-ATP6 C19ORF70 SNAP91 ATP6V0E2 NDFIP1 RABAC1 NEGR1 RPL7 FAM219A STMN4 SLC39A10 SEPW1 PTGDS TPRG1L MRPS21 CD99L2 PTPRN HSP90AB1 PSMC3 DYNLT3 ASPDH RPS10 GAD2 DNAJA1 PCSK5 KLHL5 MTATP6P1 HSPB8 KCNIP1 VDAC1 PEG10 RP11-111M22.2 CFH TUBB3 SERPINF1 IDS FTH1 GPR98 RPL17 RPL17-C18ORF32 PLEKHD1 HNRNPA1P40 ARFGAP2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 GAPDH TMSB4X SNAP25 SST MT-CO1 MT-ATP6 GPM6A PRNP OXR1 SERINC1 SYNPR TUBA1B ATP2A2 ATP1B1 PRKACB RAB3B MAPRE2 NDRG4 MT-CO2 NAP1L3 ACTB RTN3 CLU KIF21A CLSTN1 PJA2 EIF4A2 MT-ND3 ENO2 MTRNR2L1 NAPB PPP2CB GRIK1 RTN4 CADM2 CD24 MAP1B VAMP2 TSPAN7 CNTN1 VGF ARL4C GAD1 CLTC CLIP3 TRHDE PCDH17 SLC38A1 CHN1 SYN1 TH FXYD6 NUDT21 YWHAG APLP2 SLC24A2 SPP1 SARAF PRKAR1B ARL6IP1 GABRG1 PTPRN MT-ND2 FAIM2 CORT ACTG1 RTN1 MLLT11 RPL15 CALM3 TUBA1A MARCKS APP PEG10 CFL1 MT-CYB RPL41 ZNF385D KRAS NGFRAP1 CNR1 IDS TENM1 ZCCHC12 APLP1 UCHL1 RHEB RPS28 WASF1 ELAVL2 TIMP2 VPS35 PPM1A PTPRT RPL13 ATP6V1B2 KLC1 RPL21 MTATP6P1 VDAC1 ARL8A TMEM59L DCTN3 PNMA2 H2AFZ PPP2R1A SNCA CHL1 SYT1 GDI1 PPDPF ARL6IP5 DYNLL1 NDFIP1 TUBB2A REEP5 PFN2 THY1 KCNAB2 CTBP1 PPP2CA RPL13A BEX1 YWHAQ TMX4 TMTC1 ALDH5A1 MTRNR2L12 YWHAB PTPRS BASP1 CD99L2 RPL3 PAM NCAM2 AP1S1 TXLNB CKB HSP90AB1 SPOCK2 TMEM130 MTRNR2L6 PGK1 USP5 PPP2R2B CLTA NHP2 ATP2B2 POLR2K GAD2 ATP1A1 FAM174A GABRQ NDUFA5 CITED2 CALM1 SLC22A17 SCAMP5 RAB6A PREPL ATP6V0E2 RP11-195F19.5 PKM NAP1L2 EHD3 SNCG TSC22D1 ATP6AP1 TAGLN3 PSMC1 NXPH1 KIF5A RSL24D1 HSP90AA1 CDH13 COX6A1 ASAP1 RPL11 COX6C ITFG1 AP2M1 PEBP1 CHP1 SNX17 MTCH1 PRDX5 TSPYL1 TLE4 EIF4G2 DNM3 MLF2 ITM2B LPPR4 CTNND2 SEPW1 DPYSL2 CAMKK2 RPL39 GHITM SCARA5 NDFIP2 STMN1 SLC6A17 SKP1 SUMO3 YWHAZ DNAJB9 NCOA4 PTMA STX1B NREP MZT2B SNCB SCD5 NSF PEA15 STXBP6 NEGR1 SLC6A1 KIF3C JUND SLC9A6 MFN2 MT-ND1 EIF1 BCL11B TPI1 HNRNPH2 TM2D3 KCNC2 LZTS1 ZFAND5 UBE2V2 WNT16 CLEC2L CISD1 RAB11A ACOT7 SLC32A1 TERF2IP RAB5C SLC25A6 ATP1A3 PPIA PCDH19 NPTXR ELAVL4 PGRMC1 EID1 PHYHIPL UBB NDUFA4 SLC26A10 BAALC EPS15 DYNLL2 DIRAS2 MAPK1 ITM2C TOMM70A NDUFS5 ARPP19 SULT4A1 BSN MYL6 TPT1 PRKAR1A NPTN DNER RPS3A CLGN ADSS SLIT1 SCN1A ETV5 PTPRH ASNA1 RPS5 LGI2 PCMT1 NRSN2 CAMK2G MDH2 EIF1B RAB3C NPAS3 COL6A1 CAPZB STX1A TRIM37 PPTC7 SOX2 FTH1 DPP6 NDUFB7 NGRN RPL6 NELL1 ARHGDIG CX3CL1 SRD5A1 DLX1 FAM84A SNX10 CALM2 RP11-20I23.1 CHGB SUMO2 WNT6 KIAA1024 FGF12 NDN FSCN1 SYT5 OLFM2 RPS15 SERINC3 PLD3 SLC31A2 MAPKAPK2 ATP6V1C1 SUB1 EIF1AX FAM131B RNF11 COX7C MAP1LC3B MAP1LC3A DYNC1I1 ATPAF1 CCDC124 HSPE1 GOT1 PTRF PLTP DYNLT3 DDAH1 HLA-B SRP14 ANAPC13 NFE2L1 SLC12A5 GPX1 RPS27A LMBR1 CETN2 CHMP5 MYEOV2 MAPRE3 CDS1 ATRN COX6B1 FARSA FTL HIGD1A DPY19L1 RASGRF2 HK1 KIAA1211 PSMA7 SOD1 YIPF1 PTK2B SNRPN MRFAP1 CCDC78 C6ORF1 MORF4L2 BEX4 RGS4 SOX11 WBP2 PPP3CB SLC7A5 KLHL5 GYG1 RAP1GAP2 NAP1L5 LIG1 ATP6V1A CTSD ENSA OPCML CYCS DPF3 COX7A2L C7ORF50 IGF1 COMMD6 HSPA8 ARF1 SYT11 MT-ND4L PPP2R4 CEND1 SH3BGRL3 TGOLN2 CYFIP2 NPPC ECM1 ZNF319 MTND1P23 LAGE3 C1QBP SCOC ARF3 PPP2R2C RASGRP1 HMP19 IQSEC1 STMN3 TUBB3 EDIL3 EGFL7 LHX6 WBP11 ANAPC11 RPS4X CXXC4 TOMM7 ROBO2 SIRPA BCL6 TCEB2 UHMK1 OPA1 KIFAP3 PTPRN2 IFI6 VAT1L NRIP3 CABYR BEX2 HEY1 RPL35 KIT WIF1 EFR3A CDK5R1 RABAC1 NPY FAM131C VDAC3 UBA52 TMEM258 STMN4 MYL12B ATP5F1 EPHB6 RPH3A LYPD6 RAB6B C14ORF2 REEP2 DCLK1 TSPYL4 DLD B3GALT2 PDZD11 DNAJA1 NCALD FAM96B RPS6 PHYHIP CDR2L RAB27B NHP2L1 ATP5G1 RRAGA C9ORF16 DBNDD1 VAMP1 MAP2K4 ZNF536 GLO1 CDK17 GRIN1 DNAJC5 PAFAH1B2 KCNF1 PPP3CA GNB1 NXPH4 MYRIP CADM3 MRPL33 UQCRH CREG2 BTBD10 ARHGAP35 RPS19BP1 ACLY TMSB10 STMN2 PRUNE2 MTRNR2L8 ATP6AP2 SLC17A7 RAB3A HDLBP GABARAPL1 YWHAH ANXA7 C1ORF54 SEMA3A TBCA SYNGR1 SSTR2 RTKN SRM ATP5G2 RAB2A MAP2K1 GPX4 COX4I1 SNAP91 MAFB TSPYL5 ALDOA GSTO1 LINC01314 NRGN CAPZA2 LDOC1 SYT17 PSAP FAM219A FLOT2 C11ORF31 PLCB1 RPL37A IGFBP6 B3GNT1 KIF1A SEC61G CAPNS1 SCN3B GAP43 OCIAD1 INPP5F SPRN GABARAPL2 DCTN1 INA RPL8 YAE1D1 PELI3 OAZ1 ATP6V0C FAM163B C19ORF43 ATP6V0D1 SEZ6L2 GRIN3A PRSS3 CSDE1 CRIM1 TCEAL3 RAB11FIP5 MANBAL CACNA2D2 BSCL2 RP11-219A15.1 CYB5R3 PCDHGA6 PCDHGA10 PCDHGA5 PCDHA4 PCDHA10 PCDHAC1 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST RAB3B RTN4 SPOCK3 RTN3 MT-CO1 MT-ATP6 TMSB4X ATP1B1 NCAM2 CLSTN1 BEX1 ATP6V0E2 INA GPM6A DNAJC6 NGFRAP1 SYT1 SLC22A17 ATP1A3 FXYD6 EFR3A ARHGDIG NDRG4 NRIP3 PPP1CB AP2M1 SCD5 CNTNAP3 PTPRM ELAVL2 SRP14 HSP90AA1 MAP1B FAIM2 GNG2 CADM2 ATP2A2 ALCAM PSMD8 RP11-111M22.2 COL25A1 DCN KCNA2 BEX4 SYNJ1 HMP19 SNAP25 RPL21 YWHAB CHN1 VAMP2 SLC12A5 PVRL1 ACTR10 MT-CO3 TSC22D1 APLP2 KLC1 CDH13 SPOCK2 CDK5R1 TMSB10 STXBP1 SCN2B CLPTM1 PTPRN MLF2 RPL35 DPYSL2 OXR1 COL6A1 PIN1 SPARCL1 SEPW1 AP3S1 CKB SNCA CAPZB NR1I3 TUBD1 ENPP2 RAB1A PSAP PAFAH1B2 WLS TKT RHBDD2 CBX6 RAB5C KIF5A TCEA2 TMEM151A ANAPC11 D4S234E LDOC1 INPP5F SLC1A2 OR6D1P TMEM35 ARHGAP6 PGRMC1 HSPA8 ATP9A VSTM2L DPP6 SYT4 SERPINI1 MRPL47 ATP5F1 CDKN2D CLTC SCN1A ENO1 DCC TBC1D7 CD59 TSPYL4 CHGB ARL6IP1 ALDOC QDPR NRF1 GRIK1 PCDH19 CTSD SPOCK1 ATXN10 COX6C SPCS2 RPS15 BANF1 IRS4 PRDX5 IKBKE TPGS2 ABHD14A ARL6IP5 ARL4C BCL11B TSPAN12 KCNC2 CHL1 PNMAL1 COX14 PJA2 RP11-195F19.5 UQCRH ACTG1 SLC39A10 OLFM2 STMN3 CNTN1 SYT13 PTCHD4 NKIRAS1 RPL39 RAPGEF5 DKK1 RPS28 MORF4L1 RPS6 GAD1 SMAP2 NAPB NREP PRNP PGAM1 CADM3 CHP1 USMG5 CYCS UCHL1 NCBP2-AS2 TUBB4A CAP2 ROBO2 NCALD SNX10 CSDE1 PDCD5 SLC19A1 TRHDE ADAM23 PLCB1 RPL23A PDE1A PPP2R2C H2AFZ SH3GL2 STMN2 RPL13 AC244489.1 DIRAS1 RAB2A ATP2B4 STXBP6 C9ORF16 GAD2 NRCAM VDAC3 GAPDH UQCRC2 HMGCS1 UBE2F TUBB4B RPS3A MT-ND4 TPT1 CRTAC1 PREPL KIF21A ITFG1 TMEM130 SYNGR1 DAB2 METTL23 RGS4 ITM2B MT3 LMBRD2 FTH1 LINGO1 SNCG GDI1 UBC NDUFA4 PSD3 CPLX1 FAM127A LYNX1 TIMP2 CALM1 TMX4 ASAP1 TAGLN3 PPP2R1A UTRN YWHAZ SUCLA2 PIP5K1B SCAMP5 BTBD10 MAGED1 OCIAD1 NDUFS5 FAM84A CERS6 RELL2 ZMAT2 CYFIP2 MT-ND3 ABCA8 UQCRFS1 TCEAL3 ATP2B2 CCDC85B RAB6A SSTR2 UBE2N FABP3 UQCR11 RASGRF2 CFL1 MAF SERINC1 CIAPIN1 NHP2 GBE1 MRPL33 HSP90AB1 MT-CYB NAT8L RAB40B RNF11 NCDN RAB3IP TOMM20 GABARAPL1 SFRP1 EPS15 TUBA4A PSMB3 ATP6V0C RP11-20I23.1 IDS YBX3 BSCL2 RPL13A PCDHGA6 PCDHGA10 PCDHGA5 PCDHAC1 PCDHA4 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 CALM2 ATP1B1 SPARCL1 FTH1 SPOCK1 EIF1 NDUFV1 RAB3IP CALM3 SYT4 SPOCK3 ETV1 RPL13 MAF NDUFB8 MT-CYB RPL31 ARPP19 PREPL GDA RPL38 SYT1 SNAP25 RPL21 MRPL15 SCG2 TMA7 SOX6 SERPINI1 DLX1 CERS6 GMFB BEX1 SKP1 VSTM2A PNMA2 ADAMTS5 KCNK2 MAP7D1 GRIK1 GNB1 RAB6B TMOD2 PSD3 MTPN NELL2 RTN3 FTL SERINC1 MYL6 C1ORF52 BSN STK24 MTRNR2L12 MAP1LC3B TMEM35 OXCT1 ATP5O FGF12 RPS19BP1 MT-ND1 MAFB TOMM20 RPS15 BCAP31 TMSB4X TSPYL1 TGOLN2 LMO4 SLC9A1 ERH ZNF536 ACTB CAPZB CLSTN1 ISCU ST6GALNAC3 TMEM59L CYFIP2 ENO2 NDUFS5 DYNLL1 PRKACB CDC42SE2 AP2M1 MT-CO2 GAPDH ISCA1 GNG2 PPP2R1A PRNP DPYSL2 ATP6AP1 ATP1A1 SLC8A2 NDRG4 RP11-111M22.2 RTN1 TSPAN7 PGM2L1 NGFRAP1 TMX4 RAB3B SOD1 TENM1 PDZRN4 HIGD1A TUBA1A ELAVL2 CEND1 VDAC3 RPS4X SEPT4 SERINC3 THSD7A FIGN C19ORF70 MDH2 FLOT2 COMMD6 ARHGAP35 SMAP2 MTRNR2L8 CCT5 CALM1 RPS28 YWHAB MTATP6P1 CFL1 SCD5 MTRNR2L1 KIF1A DSTN RPL3 MT-ATP6 ROBO2 ITFG1 NTHL1 TCEAL7 BSCL2 RNASEK-C17ORF49 MTRNR2L6 ALDOA NGRN RPL13A RPS3A BIRC5 CYB5R3 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-ND4 SYT1 MTRNR2L1 MT-CO1 MT-ND3 SNAP25 MT-ND1 DNER TAC1 TMSB4X SARAF GDI1 CALM1 ZNF385D WASL ITM2C HSP90AA1 ASAP1 CADM3 YWHAG ATP1B1 MAF SFRP1 MORF4L1 AP2M1 CCK MT-CYB SLC6A1 PTCHD4 OPCML CALM3 MTRNR2L6 CYB5R3 MTCH1 CTSD GPX1 MYL6B SRM MTPN COX5B TOMM20 ETS2 ARL6IP1 SCN1A NRCAM STX1A CHCHD2 RTN4 FXYD6 NAP1L3 NUDT21 NEGR1 PSMD2 CDK14 PSD3 MAPRE2 CXXC4 GRIN1 TEX15 PPP2R2B KCNMB4 MAFB RAB40B SNCA PNMA2 VPS35 NRIP3 PRKACB ATP6V1F NGFRAP1 TPD52 ARPP19 FAM174A SNX17 ACTB PPP1R9B HDDC2 CENPVP3 MAGED1 PGRMC1 ATP6V1C1 KIF21A SOX6 PREPL SERINC1 APP KRAS TUBB2A ERBB4 FGF12 RABAC1 MAP1B ZNF536 PPP1CB TRIM37 SPOCK2 GPRC5B NNAT STXBP1 MAP2K4 PCMT1 NPTN VSNL1 MYL6 NPPC FKBP4 ZBTB20 RPL15 IDS SUCLA2 FAT3 KIT CLU ARL2BP DNAJC5 MDGA1 PRKAR1B HSP90AB1 CLSTN1 GRIN3A PPIA PPP2CB WLS SNRPN GPM6A BASP1 GOLIM4 NDRG4 TERF2IP FAM149B1 NAP1L2 IQSEC1 SLC38A1 JUND ANAPC13 CYCS DPYSL2 CTGF HMP19 NAT8L TUBA1B PTMA POMP ITM2B PPP3R1 SLC17A7 ATP1B2 RPL17-C18ORF32 PSMB3 RPL17 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYT1 GPM6A CHN1 PLCB1 FXYD6 TUBB2A YWHAH MT-CO2 PGRMC1 SNAP25 EXTL2 GAPDH SYT13 PRNP LMO4 ATP6V1B2 APLP2 RTN1 YWHAG NDFIP1 YWHAZ CAP2 CAMKK2 APP MTCH1 ENC1 MAP1B PREPL ENO2 MAPK1 CALM3 D4S234E SYT3 CFL1 CCK MT-ND2 PEA15 TSPYL4 NAPB LAGE3 SEPW1 GDA SLC24A2 KCNMB4 TUBA1A RP11-632C17__A.1 TMSB10 PIN1 PLCXD2 MT-ND3 PFKP CTXN1 GAP43 WBP2 OCIAD1 CAPZA2 SLC7A1 STMN4 SMAP2 RPH3A MT-ND1 VSTM2L SRP9 LMO3 MT-ND4L ATP6V1G2 ANXA7 UCHL1 TSPYL5 DYNC1I1 GLDN MORF4L2 UBE2E3 PCMT1 NEFM ARL8B SLC6A17 PPIA MT-ATP6 STMN2 AP2M1 PKM TCEB2 CPE MARCKS VDAC2 CLU POLR2M CTNND2 ATP2A2 BCL11B TENM3 GRIN2A ITGA6 NRIP3 STRAP FAM163B FUNDC1 GRIN1 SUMO3 CREG2 TMA7 ISG15 MSMO1 VAMP1 UQCR10 ROBO2 TRAPPC1 THY1 TSPAN7 GRINA SUSD4 DHCR24 PRKCE PRKCB ATP6V1F ATP2B4 MAP4 INSIG1 RPL11 HES4 CIAPIN1 MAP2K4 TMX4 FBXL16 SUB1 PGK1 MGST3 NDUFA1 CYP26B1 STX1A MT-CO1 SYNGR1 NGRN SNX17 ZBTB18 MED10 COX6B1 NRGN PRKCG BTBD10 OPA1 HSP90AB1 MAPRE3 SPARCL1 PPP2CB IQSEC1 MTATP6P1 STMN1 TPD52 BSG ID2 VSNL1 RAB1A GPR126 YWHAB OXR1 UBE2V2 DGUOK SCD5 SLC25A5 PLS3 RAPGEF5 MAP7D2 FXYD7 SLC22A17 SERPINF1 CCDC85B MT-ND4 DIRAS1 UBQLN2 DNM3 SERINC1 CABP1 EPHA6 STUB1 SQLE BAI2 UHMK1 MAL2 RTN3 INPP5F TMEM70 PRDX5 NECAB1 PEBP1 SPOCK3 PRDX3 NAT8L STXBP1 NGEF CKB COX7B NDUFS5 RAB3B ACOT7 GABARAPL2 CALM1 AKAP12 ITM2C IDS RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MT-CO2 MT-CO3 SYT13 MT-ND3 CALM1 MT-ATP6 TAC3 SPARCL1 MAP1B SPOCK3 EIF4G2 EDNRA AP3S1 PRNP SYNPR ENO2 FXYD6 PTMA KCNC2 AES FTH1 CTU2 EID1 GPM6A ATP1B1 PREPL RTN1 EIF1AX NPAS3 CLSTN1 QKI TRHDE CADM2 BSN RCAN2 CPLX3 SLC6A17 ATP5I PGM2L1 TM2D3 MT-ND4L PPP2CB TUBB2B PPP2R2C SPTBN1 CLIP2 JUND CHGB STXBP1 TPGS2 PIP4K2A SLC6A1 TLN2 SNRPN SYNGR3 DIRAS2 TGOLN2 PPP3CB VAMP2 INA ADAMTS5 TMSB10 DYNLRB1 RAP1GAP2 ATP5O MAPK1 MTATP6P1 NDUFA4L2 DYNLT3 ITM2B OXR1 ATP6V1F GRIK1 RPL3 GDI1 SCN2B HOMER1 SAMM50 TMSB4X SLC9A6 PCSK5 PDE1C APP PFN1 MED10 SYNGR1 TSPYL1 PGRMC1 ITFG1 DNAJC6 STXBP6 DNAJB6 RAB6A LHFPL3 SSTR2 VEGFA NCDN RPL18A NAPB NBL1 CLU AP2M1 PGAM1 MBOAT7 ACTG1 ATP6V1B2 KCNIP1 FASN GABARAPL1 SYT4 SNAP91 NDUFB4 NDUFB11 MAF KCNF1 CISD1 AP2S1 RAB3C NDUFA2 FTL RTN4 CHN1 MTRNR2L1 CNRIP1 FAIM2 ARL1 LIMK1 SYT1 ATP1A3 NXPH1 EFR3A MT-ND1 NAP1L2 CDH13 PNMA2 BNIP3 RPS28 YWHAG NAP1L3 NDUFA4 CYFIP2 COPRS HSP90AA1 ATP6V0B SERINC1 CERS6 CALM2 BEX4 SCN1A MAP1LC3B EPB41L3 RPS5 GOT2 EIF4A2 RELN COX6C DLD SERINC3 CSDE1 MT-CYB VSNL1 NMU ARL6IP1 APLP2 DNAJA1 MAP1LC3A OLFM1 SYT11 D4S234E NDUFC1 RTN3 TMEM200C RNASEK-C17ORF49 RPS15 MTRNR2L6 GPR98 ALDOA TUBB3 AC244489.1 ZNF385D RAB3B RPL21 PCDHGA5 PCDHGA10 PCDHGA6 NR1I3 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO2 MT-ND4 MT-CO3 ATP1B1 GAD1 MT-ND3 CLSTN1 SPARCL1 SNAP25 SNRPN FAIM2 MT-CO1 ACTG1 ELAVL2 GPM6A TRHDE NEGR1 ARL4C SYT4 PNMA2 ENO2 MAP1LC3B SLC39A10 NDUFA4 TPPP YWHAG CAMK2D DPYSL2 TSPYL1 RAPGEF5 PKM FXYD6 PTPRM FTL CAMK2N2 GAPDH MT-ND2 SST LMBRD2 PJA2 PAM ACTB SLC24A2 INPP5F GRIK1 VSTM2L PPP3CB TBC1D15 SERINC1 NAP1L2 SLC6A1 BSCL2 PRNP ENO1 NPTN TEX2 CALM1 SLC9A6 SNCA KLC1 MDH1 RCAN2 MFN2 NDRG4 TUBA1B GRIN1 TMSB10 VGF ATP6AP1 SKP1 ARF1 MAP4 EIF4A2 CHN1 WSCD1 TUBA4A SLC38A1 RPL37A SV2B PGRMC1 NCAM2 WLS SLC12A5 SPOCK1 FGF12 STX1A ELFN1 MORF4L2 PPP2CB NBL1 RHEB KIF21A RTN3 EDIL3 RND3 THY1 YWHAZ PRKACB SARAF SPOCK2 NUDT21 CHCHD2 DCLK1 COX6A1 UBB RTN1 TUBB SPTBN1 APP WSB2 SPOCK3 CNTN1 SYNPR ATXN10 WBSCR17 CYFIP2 HMP19 VAMP2 GPX4 SNAP91 YWHAH RPL13 ISCA1 OAZ1 NREP GDI1 TUBB2A VSNL1 MAGEH1 ATP6V1B2 MAPK8IP2 MTCH1 CBX6 SEMA4G HSPBP1 NPY CALM3 UCHL1 HK1 PPP2R2B INA CD59 SSBP3 C1ORF233 CNR1 CDH13 TMSB4X MT-ND4L FBXW11 PPP3R1 FAM219A ATP6V1F CALM2 HSP90AB1 GOT1 RAB3C MT-ATP6 PDP1 ACTR6 CHGB MZT1 KCNF1 GNAQ RHBDD2 GSTP1 KCNA2 HCN1 OAT IGF1 LDHB CORT COX8A PITHD1 GHITM SUB1 GNG2 SSTR2 GYG1 AP1S1 UBA1 KCNA1 INHBB CYB5R3 TKT BCAT1 ISCU ATP6V0D1 CCK RPL11 RPS19BP1 NDUFA5 DYNLL2 ECM1 TPD52 PGK1 MBOAT7 BAD CHL1 DCC RASSF8 ARL6IP5 SLITRK1 PRPS1 COPS7A STMN1 SYNJ1 HSPA8 SYN1 RP11-20I23.1 SCN3B GSTO1 RPL12 NCDN STUB1 MTRNR2L12 DYNLRB1 ARL6IP1 SRM STMN4 SLC22A17 C1QBP TPGS2 OPCML CHP1 TMEM130 CDK5R1 EPDR1 CADM2 ERBB4 TSPYL4 TOMM20 MAGED2 IQSEC1 SHISA6 ATP6V0B F3 GMFB PRKCE RASGRF1 NCEH1 SIRPA ITFG1 TENM1 APLP2 BNIP3 HEG1 MTPN NCOA4 SYT17 ADARB2 LUZP2 NAP1L3 RAB6B DYNC1I1 PEBP1 AES TMEM191A SOX6 RPL15 FAM127A TMTC1 RPL39 HMGCR COX5B CX3CL1 MAP1B LINC00086 SEZ6L2 SCAMP5 TMEM35 ATP1A3 ATP6V0C OXR1 CTNNB1 ATP2A2 SERINC3 AP2M1 JUND ATP5E RPL18A PHKG1 ETV5 KCNAB1 ARPC5L SOX11 WDR47 C1QL1 SYT11 MAP7D1 RAB3B SNCB NDUFA4L2 KCNAB2 WBP11 PDE1C SEMA3A PREPL SCD5 COX7A2 CLU ARPP19 AP3S1 SYT5 MLLT11 BSN NMNAT2 OPA1 HOMER1 TUBB2B DSTN PLCB1 NGFRAP1 SLC25A6 REPS2 MAP2K1 NRIP3 ITM2B DPY19L1 GNB1 OXCT1 UBA52 YWHAB NDUFA13 PNMA1 NRCAM PRUNE2 KCNMB4 MRPS21 PHYHIPL THEMIS2 DKK3 MAPRE2 DIRAS1 NCALD PPA1 MAL2 EIF1AX VCAN DLX1 S100A6 RELN SYN2 UQCRC2 CLIP3 ARX PNMAL1 MAOB CISD1 RPS15 PRKAR1B POLR3H TLN2 TMOD2 PCBP1 NAPB TBCA PPIA FAM43B SMS MT-CYB BIRC5 PRDM1 RSPO3 RAB1A IDS NIPA1 GPX1 LANCL1 NAP1L5 GRIN3A NXPH1 TMX4 CRHBP LPPR4 CAMK2G MAF ATP6V1G2 NSF NUDT4 NGRN PCDHA10 PCDHA4 PCDHAC1 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SST RPL38 TUBA1B ATP1B1 GRIK1 TOMM7 CHN1 EIF4A2 ENO2 RPL35 RPL37A RAB6B RTN3 PITHD1 SLC6A1 ARL6IP1 MT-ND1 IDS AES SYT1 CKB TSPYL1 FTH1 RP11-111M22.2 MT-CO3 FXYD6 STX1A RPL41 MT-ND4 MTG1 NAPA BEX1 PPIA TMSB10 APP MT-ND2 ATP5B PNMA2 NGFRAP1 SOD1 RPS10 CNTNAP5 POMP ATP6V0E2 SEZ6L2 SNRPN UQCRB PHF11 TAC3 UBC ATP6V1B2 GNB1 CCK YWHAG OXR1 ATP5J BEX2 RPL8 TBCB PTPRN2 MT-CYB WASL RAB3A RAB7A MDH1 ZBTB20 DYNLL2 H2AFZ FAM127A GNG3 RPS19BP1 UBQLN2 GRIN1 PTMA ATP5E LMBR1 GAPDH ATP6AP1 QKI DYNLL1 RPL23A RASGRF2 CTSD CADM3 DLX1 SERF2 PTPRT ATP6V1F OLFM2 RPS12 PPP3CB SAMM50 PNOC EIF1AX TRHDE SLC12A5 COX6C SYT4 CALM2 CYB5R3 CAMK2D PARM1 C1ORF194 NDUFA8 RPL12 TSPAN7 RPL13A CDK17 ITM2B KLC1 NOP10 GPM6A PLD3 PPP2R2B HMP19 CYP2R1 SYNGR1 COX7A2L RTN1 OR6D1P KLHL5 CALM1 SLC25A22 CIAPIN1 SKP1 NAP1L3 BIRC5 COX7C RPL7 RPL15 COPS8 SLC38A1 DCN PKM VSTM2L COX5A DEXI SNAP25 PODXL RELL2 UCHL1 NREP SEPT4 POLR2L TERF2IP MT-CO2 COX6A1 PPDPF COX8A NDUFAF3 CNTN1 BLVRB COBLL1 NAP1L2 RTN4 RTDR1 MT-ND3 UQCR11 RPS3A PJA2 SLC22A17 ARPP19 SNCB RTBDN RHBDD2 OAZ1 PFN2 HSPA8 CAPNS1 UBE2M SOX11 PBX3 TMEM65 MRPL47 NCEH1 RPL31 C1D SUMO2 RPS6 ARPC4 MAPK8IP2 ATP9A COL25A1 PTPRS MAPRE3 MED10 CNR1 TMEM130 PRDX5 DRAP1 ARL6IP5 PI4KA NR2F2 SLC39A10 MRPL37 CAPZB NDUFA4 PLS3 GPX4 PFKP RAB3B SYTL2 PSMB3 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST TAC1 SNAP25 SYT1 RP11-111M22.2 GAD1 TMEM59L ATP1A3 CALM2 GHITM CREG2 NAPB GRIK1 FKBP8 MYPN RPS28 COX4I1 ATP5G3 RTN3 TM2D3 MT-CO1 GTF2B ATP5B MZT2B SPARCL1 FLT3 MRPS7 SNCG MT-CYB RPL37A HSP90AA1 FAM163B DCTN3 ELAVL2 TMEM14A AP2M1 UCHL1 PSMC3 SYT4 COL6A1 PNMA1 CAMK2D TAGLN3 RPL13 MRPL52 ATP6V1E1 TBC1D7 MAP1B EIF1B SCN1A PEX5L MPPED1 BRICD5 ATP5J ATP6V0E2 MPP1 SYNGR1 DYNC1I1 PPP2R2C BEX1 SUSD4 ATP6AP2 RRM2B BTBD11 MRPL20 TUBB4B BHLHE40 C6ORF1 PKM NGFRAP1 RPS3A CNTNAP3 GDE1 CNRIP1 GABRA5 BIRC5 THY1 KCNAB1 LYNX1 ATP5I MARCKSL1 PTCHD4 VSNL1 C19ORF43 HEY1 PNKD STMN4 MT-ND3 CD59 UQCR11 CCK EFHD2 MAL2 RPH3A RPL10A ELAVL4 HSPE1 MORF4L2 RPL41 TMSB10 MT-ATP6 ITM2B CRH MT-ND4 PRKACB PINK1 MT-ND2 SLC22A17 RGS4 SPTBN1 PPDPF RPL11 BCAP31 VDAC2 MDH2 RPL21 GRIK3 C7ORF50 KCNIP1 SCN3B PEBP1 RPS27A GNB1 PGK1 SLC6A1 ERBB3 MAGED2 DNM3 RTN4 EPB41L3 NPAS3 CTSD SSTR2 GDI1 ERH ACTG1 PNOC CAMK2G FAM134A GABARAPL1 TMEM11 KIF1A WDR4 GAPDH ENO2 ARL6IP1 CLU FAIM2 TMEM130 RPL26 RPL3 PRPS1 MYL6B AK3P3 PRDX2 SLC24A2 NRGN PSENEN UQCRH CAPZB SCOC KIF5A REEP5 TUBA1B ECEL1 SNAP91 APP SYNPR MTRNR2L12 CDC37 RPL7 ZBBX TPPP PPP2R1A RPS4X OLFM2 ATP6V0B SAP18 RBX1 ARPP19 YWHAB SYN1 RPL31 CKB UBA1 PSMD2 HSPA8 TCEB2 NCDN ATP1B1 BSCL2 GABARAP B2M CORT IDS ALDOA HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B CLSTN1 SPOCK2 MT-ND4 ARL6IP1 TIMP2 CDK5R1 EPHB6 BCL11B CDC42SE2 GPM6A MAP1B RPL35 MYL6B RPS27A EPS15 SYT1 RPS3A RP11-111M22.2 SNAP25 SEMA5A PGRMC1 VPS35 RAB3A RPL21 CERS6 ATP5F1 NXPH2 APLP2 SPOCK3 NPTXR CDKN2D CDH13 KCNC2 CSDE1 RTN4 MT-CO2 PPIA USMG5 SLC6A1 VGF LRP1B ATP1B1 NEGR1 RPS15 COX4I1 PLAUR RPL26 SLC1A2 TSPAN7 RPS19BP1 TENM1 CPLX1 PRNP YWHAH EID1 ATP6V1F UHMK1 CNTN1 GRIK3 SARAF COX7C ARL6IP5 GABRA1 FAM3C MAPK1 RBX1 PJA2 DKK3 SNX17 RPL13A STMN1 CYB5R3 BEX4 CLDND2 GPR158 RPL38 CPE CCND1 YWHAZ ANLN CLSTN2 FSCN1 CALM3 DYNLL2 BCAT1 PACSIN1 GRINA ACOT7 GNAQ PRKACB SYNGR1 FGF12 UCHL1 PEBP1 EIF1 SST MAP1A MT-CO3 OCIAD1 GAD1 SYT17 ATP5E RPL32 VSNL1 TUBA1B SERF2 RAP1GDS1 TRIM37 PRKCB RPL41 NRF1 CACNA2D2 PTPRN ATP6AP2 RPL17 SYNPR CHN1 RHOB ATP1A1 BAG4 RASGRF2 YWHAG SNRNP25 OXR1 PPP2CA CMAS RTN3 EDN1 CORO1B PREPL TSC22D4 SLC38A1 PTK2B MBP MAP2K1 RPL23A UQCRFS1 NAPB RAB6A ANKRD20A11P MPPED1 FXYD6 HMP19 ATP2B2 VSTM2L IDS NGRN B2M GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-CO2 MTRNR2L12 MT-ATP6 TBC1D15 MT-ND1 RAB3B APP SYT1 ATP1B1 ZNF385D SNAP25 ACTG1 SPOCK3 MT-ND2 MT-CYB SYNPR GAD1 MTRNR2L1 RTN3 HILPDA NCAM2 PPP2CB OXR1 CADM2 NMNAT2 CLTA NPAS3 MT-ND5 PPIA YWHAG RPS5 FAIM2 RND3 IDS CLSTN1 SYNJ1 ATP6V1C1 PCDHGA6 EIF4A2 FAM84A MTATP6P1 EPHA6 RPL37A GRIN1 PNMA2 TOMM7 CALM3 HSP90AB1 CAMK2G RPL38 MT-ND3 EXTL2 TMSB10 RASGRF2 CHL1 ATP5I HSPA4 PREPL CREG2 FXYD6 KIF1A SLC32A1 RAB3C PSD3 VDAC3 BCAP31 NPTN COX6B1 ITM2B SKP1 RPS3A TMEM150C ANXA6 RANBP1 GSTT1 SLC38A1 FAM19A2 SRM SARAF PDP1 CABP1 WFS1 RHEB RAB40B STMN2 PPA1 CDH8 ALCAM FBN2 MB21D2 PTPRN2 TSPYL4 NECAB1 OCIAD1 PCSK1N SCN3B BASP1 TRHDE ATP6V1A PRDM1 PRNP BAG4 ANK1 PRKACB MDH1 STXBP1 TTN NXPH2 TUBA1A CBLN4 TIMP2 CTNND2 KCNAB2 GUCY1B3 CNR1 WASF1 GDI1 RASGEF1B SCD5 STRAP SNRPE EGFL7 BEX1 MTCH1 SLC39A10 SELM ABHD14A RHOB PAM HDLBP STX1B SEC61G LGI2 UBE2QL1 RPS2 CDH7 RPL39 GPM6A PTPRT FIGF RPS15 BTBD10 MAP1B SLC12A5 THY1 SCG2 RCAN2 SSBP3 SLC8A2 RAP2A ARF1 GABRG1 EPS15 TPD52 MTRNR2L8 SLC7A8 NAPA SPTBN1 FSTL5 SLC24A2 TMA7 WI2-1896O14.1 MAPRE3 KLHL5 NCDN ATP6V0E2 CD63 ELAVL4 ARL2BP EML3 RAB3A RTN4 ATP6V1F TENM1 TMX4 CDH13 FAT3 OLIG1 SYT11 MTRNR2L6 TSPAN7 DYNLL2 UCHL1 ATP1B2 SEPW1 SSTR2 MAGEH1 TMEM200C PRKCB SPARCL1 MBP ROBO2 RAB2A NDRG3 NGRN ATP6V0C RPL41 RP11-20I23.1 SYT5 RPL36A RPL26 SYTL2 HNRNPA1P40 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST SNAP25 SYNPR NGFRAP1 OXR1 SKP1 SRM PRKACB SARAF TMEM59L ATP6V0E2 UCHL1 GRIK1 RPL39 RPL32 CPLX1 CALM2 VAMP2 ATP1A3 SERINC1 GPM6A JUND MT-CO3 MT-CO1 SPARCL1 RPS15 SCN3B RPL35 HSP90AB1 SERPINI1 APLP1 RPL37A RPS6 RPL36A RPL41 PNOC PFN2 ZNF385D SYTL2 RAB3B BIRC5 DKK3 UQCR10 PI4KA PDP1 RPS4X CFH ITM2B FTL RPL8 PPP2R1A TPGS2 PTPRT TPD52 MTRNR2L1 HN1 EEF1A2 VSTM2L PPIA COX7B DLX1 NDUFB3 CDH8 BASP1 STMN2 MT-ND4 KIF21A GRIP2 YWHAG KIF1A UQCRQ MAF NDUFA13 OAT RTN1 PHPT1 FBXO2 RPS28 PCYT2 ATP6AP2 UQCRFS1 AQP7 UBA52 ROBO2 PEG10 CALM1 RPS3A SYT1 DSTN IDS MT-CO2 CHL1 FAIM2 C11ORF31 TSC22D1 AP2M1 COX7A2 SCN1B RTN3 SOX11 EPHB6 GDI1 RAPGEF5 PCSK1N TMEM132C ATP1B1 STRAP RTN4 LL0XNC01-16G2.1 FRMD4B TCEB2 SCAMP5 APLP2 CLU GRIN1 YWHAB CADM2 TOMM22 NHP2L1 NFE2L1 NDUFB2 SPOCK3 TAGLN3 ATG9B RAB6B TMSB4X C14ORF2 NR2F2 SH3GL2 CD99L2 SCN2B RP11-111M22.2 NDN ITFG1 STMN1 HPRT1 UROS ATP2A2 RPS12 MT-ND3 TMSB10 RPL21 CYFIP2 ATP5E LDHB CAPNS1 COX7C ARL8B EIF1AX ATP5B NAP1L3 RAB3IP FGF12 POMP TPT1 SERF2 DNM3 S100A6 MAPK1 SLC22A17 SLC24A2 PEBP1 CBX6 SLC26A10 PNKD AC244489.1 NSF ALDOA OR6D1P TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 SYT1 MT-ND4 MT-CO1 MT-CO3 SNAP25 MAP1B MT-ND3 MT-ATP6 CHN1 TSPAN7 MTATP6P1 VAMP2 CREG2 CPLX2 CADM2 SST MTRNR2L1 TENM3 FTL EFR3A APLP2 PIK3R1 SPARCL1 MT-ND2 KLC1 RCAN3 PDE1A ATP1B1 CPE ARL4C RAB3C STMN2 PLCB1 PJA2 GAP43 FXYD6 CTBP1 GPM6A STXBP1 MT-CYB APP RGS4 RLIM PRNP CFL1 SMIM13 SRP9 ATP6V0C PRKCE AZIN1 CRYM SLC22A17 TOLLIP RANBP1 NDRG3 FSCN1 CLTC CRKL PLCH1 ASAP1 TPT1 HSP90AB1 LMBRD2 SCD5 DYNLT3 GAD2 TMSB10 RAPGEF5 SOSTDC1 PAFAH1B2 CPLX1 TMEM14A DPP6 RPS15 PHYHIP CAPNS1 CHGB CNTN1 HPRT1 TCEAL7 SCOC QDPR ANKRD20A11P TPPP COX7A2 DIRAS1 MSMO1 PRDM1 RTN3 SULT4A1 SNAP91 SIRPA ELMO1 EIF1 IDS CCDC184 NDRG4 VSNL1 RAB3IP EID1 BAG4 PRKACB CDK5R1 GDI1 FBXO2 UQCR11 MRPS21 HSPBP1 MARCKS PTPRT ATP1A3 PPIA CAP2 THY1 PNMA1 RTN4 HSPB3 ATP2A2 SCAMP5 CHRM2 COX7C SPOCK2 OLFM2 NDUFA4 GOT1 BSG TMTC4 TXN BCAP31 SNX10 GRIK1 FAM219A PITHD1 EDNRA PPP2CB GAPDH TUBA1B MED10 NNAT TSPYL1 YWHAZ SEPW1 PTPRN2 NAP1L3 RP11-20I23.1 SCN3B MT-ND1 CYCS BTNL9 MLLT11 DPYSL2 MYL6B SOD1 EPDR1 VPS35 RND3 WBP2 CLTA PTCHD4 CHL1 PPP2R2C CDH7 WDR47 PPP3CA RAP2A SERPINI1 ARHGDIG NAPB JUND SYT5 NPTN ATP6AP2 RTN1 RPL12 MAF SARAF RNF208 ATP6V1B2 MAP1LC3B RPL36A MTRNR2L12 HDDC2 NBL1 ALDH5A1 PEX5L TOMM20 GRIK3 SUMO2 TAC1 ACTR10 TRHDE BSCL2 ALDOA MTRNR2L6 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 TMSB4X GAD1 ATP1B1 SST MT-CO3 MT-ND4 GRIK1 RPL23A SNAP25 CLU RTN3 MT-ATP6 SLC6A1 NDUFA1 CHN1 SCG2 MT-ND3 ATP6V1C1 KIF1A CNTN1 CALM2 THY1 ITM2C SYT1 HSP90AB1 ATP2B2 MAPK1 MTRNR2L1 MT-CO2 COX6C PRKCB TMA7 PTMA TOMM20 GAP43 GDI1 CLTA NRIP3 NAP1L2 ACTG1 MYL6 PRNP CAP2 NXPH2 SUB1 SPARCL1 CEND1 CALM3 TMEM130 MAP2K4 USMG5 RTN1 TMEM59L YIPF3 VSNL1 H2AFZ RPL31 BEX1 UQCRH SKP1 COX7C FAIM2 PTPRM EIF4A2 TENM3 SPCS2 MGST3 ATP5I MT-ND1 SARAF ITM2B PKM PCDHGA5 TBC1D15 EID1 TMTC1 TCEAL3 ZMAT2 ATP1A3 UQCR11 PTGES3 ATP5C1 PAQR8 PNMA1 UBE2E3 CAPNS1 SOD1 SYT4 DNER TBCA DRAP1 SYTL2 EPB41L3 GAPDH ACTR6 SLC9A6 RPL37A SYNPR C1QBP CADM3 KLHDC3 NDUFA5 PCDH17 RABAC1 OCIAD1 RPS6 TSC22D1 ATP5B LIN7B PPP3CA NDUFB8 MAP7D2 TPI1 FAM84A APP RBX1 DYNLL2 CERS6 NDUFS5 RAB11A TMEM14A BLOC1S1 CD99L2 CDKN2AIPNL SPOCK1 TOMM7 MAP1B NDUFA4 ATP6V0E2 ATXN10 TIMP2 ATP5E RPL26 UBE2D2 KLHL13 CSDE1 SEZ6L2 FTL MAGED1 CYSTM1 YWHAZ TUBB4B LAMTOR5 DCN CD24 TXN KCNH5 EIF1 TMEM51 SPRN PCDH18 ATP5G2 TMSB10 PFDN4 OPCML DNAJC6 KCNAB2 PTPRN2 ARHGAP29 PGM2L1 TSPYL1 PGAM1 PPIA RPS28 ATP2A2 ENOPH1 TMSB4XP4 UHMK1 GCHFR SUMO2 SLC12A5 PSMB7 TERF2IP RPL26L1 PCBP1 THYN1 RPL7 MTRNR2L12 LANCL1 SYT13 APBB1 RPL32 WBSCR17 RHEB KIF5A ATP5G1 IDS PCMT1 OR6D1P ATP1B2 RPS19BP1 RAB6A LMBR1 REPS2 PLD3 MORF4L1 MAF CHGB RAMP1 SNX3 APLP1 ARL2BP EPDR1 DEXI EFR3A NDUFA13 OXR1 ALDOC ZNF574 CAMK2N2 TAC1 RASGRF2 TKT ARL6IP1 EPS15 PGD FAM127A C2ORF80 NDUFB1 ELAVL4 PPA1 AP3S1 GTF3A RAN ATP5F1 RPL13A MAP2K2 NPTN ALDOA SNCA PPP1CB VGF AP1S1 SLC9A1 LPPR4 PHYHIP AK5 ENO1 VSTM2A PNMAL1 TMX4 TPT1 PSMC3 CLSTN1 NDUFB4 BSG SYN2 GRIN3A STX1B NAP1L5 NDUFV1 ARL4C PTPRT BANF1 B3GNT1 ALCAM STMN1 SLIT1 PACSIN1 DCTPP1 PITHD1 TUBB SPTBN1 CTXN1 ARPP19 SNRPN ATP6V1B2 GPM6A TDRD7 NSF RP11-20I23.1 ARF5 RPL41 ATP6V0C BIRC5 GTF2H2C_2 ATP6V1G2 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SYT1 SNAP25 SST MT-CO2 TSPAN7 MT-ND4 TRHDE ATP1B1 ARL6IP1 PPIA BASP1 MT-ATP6 SYNPR MT-ND2 PJA2 MT-ND3 PGRMC1 TSPYL1 RAB3B YWHAZ RTN3 MT-CYB CALM1 YWHAB TENM1 SEZ6L2 SOD1 GRIN1 ARL4C SLC38A1 WLS HMGCS1 GPM6A PREPL ITM2B GAPDH SCD5 OPA1 GNG2 NAPB SCN3B APLP2 CHN1 CNTN1 PLD3 RTN1 SCD TMOD2 GHITM ZNF385D KLHDC3 RBX1 RP11-632C17__A.1 TERF2IP RAB3C HK1 PHYHIP UBQLN2 TMEM59L TMEM258 NUDT21 GAD1 TCEB2 VAMP2 GLRA3 SLC17A7 SCN1B ARL8B SNAP91 GDI1 PRKCG GPX4 C16ORF13 USP5 TMSB4X RPL32 RPL37A NDUFA4 ARPP19 UCHL1 NDFIP1 SLC6A1 MTRNR2L1 UBE2E3 SLC6A17 SUMO2 CLPTM1 GCH1 GRIN2A DPYSL2 CAB39 MAP1LC3A SNX3 INPP5F EPB41L3 LHX6 HCN1 PNMA2 RPL23A HMGCR OXR1 ACTG1 NDUFB10 MDH1 CDK17 ZFAND5 NDUFA5 MAP4 JAKMIP1 NGFRAP1 SKP1 YWHAG MSMO1 PSMD12 ATP2B2 CREG2 PCMT1 CFL1 SELT ARHGAP29 PLCXD2 PRKACB SNCA MRAP2 COL6A1 ELAVL2 GLRA2 PEG10 STMN4 ARF1 CHL1 KCNC2 NPTXR FBXL16 NDRG2 ELFN1 NCAM2 SEC61G CERS6 CA11 RHEB SPARCL1 DRAP1 PSMD2 GABRG1 RPL21 WBP2 FAIM2 PPDPF GMFB LIMK1 CAMKK2 CKLF VSNL1 CDK5R2 PLCB1 MRPS7 PTMA PPP3CA GOT2 COQ10B RPH3A IMMP1L CAMK2N2 PLCH1 C2ORF47 MLLT11 CFH TUBB2A CAMK2G FGF12 CDH13 FLT3 CTSD SMS NREP TUBB4B MTRNR2L8 RPS27A SIRPA RPL13A STX1A SLC2A1 AK5 SGCZ RPL31 RND3 DNAJB6 INSIG1 COX6B1 CDKN2AIPNL ATP5I LYNX1 ATP5G1 ATP5C1 PGM2L1 PLS3 BCL11B MT-ND1 MAP1B BIRC3 PRKCB DMTN ABHD14A APP TOMM70A GAP43 NCALD MAF CCDC85B PSMD8 EIF4A2 KIF5A RPS3AP23 FXYD6 ACTR1A APLP1 PKM PAM PTPRM RAB6B UBA1 ZNF536 RAN CLIP3 HTR2A MTRNR2L12 GRIK1 RAB3A EIF1B VDAC1 MTX3 LHFPL3 CACNA2D2 RTN4 TMX4 DYNLRB1 SERF2 SERPINE2 RP11-20I23.1 RPL3 ATP6V0C MTRNR2L6 BIRC5 MIF MBOAT7 AC244489.1 TF ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 SNAP25 SPARCL1 GPM6A PRKACB SYT1 PRNP TENM3 CALM2 TRPA1 KIF1A SPOCK3 TIMP2 TUBB2A GRIK1 GAD1 TSPAN7 TF HNRNPA1P40 RNF152 UQCRB DNAJC6 FAM19A2 MT-CO1 SERINC1 BSG MT-CYB CHL1 ARL2BP PPM1A TOMM7 SRP9 TCEAL2 ZFAND5 PGM2L1 SYNPR TOMM20 THOC7 CLU ATP6V1B2 ARL4C FSTL5 MRPL20 PSAP EDIL3 MAPK1 SLC12A5 CLSTN1 MPPED1 SRP14 CALM3 RPL26 ADD2 ATP1A3 MT-CO3 DNM3 PREPL COX5A SNCG PNMAL1 SPHKAP HK1 SCD5 MAP1LC3B NR1I3 CALB1 JUN RAB3C NDUFB1 PRKCE NUPR1L THY1 KLC1 DYNLL1 SARAF PDE1C SYNGR3 MB21D2 SLC38A1 PI4KA RP11-195F19.5 POLR2I CLTC NAP1L5 EXTL2 ELAVL4 SLC8A2 NXPH2 UBQLN2 NCDN UQCRH ACTB SLC32A1 USMG5 GLIPR1 CKB HINT1 CTNND2 ACTR1A LUZP2 CBX6 MORF4L2 CAMK4 PRDX5 PLCB1 SCG2 GPR171 PCBP1 EID1 VWA5A GABRA1 NDUFA4 YWHAB TENM1 VEGFA KCTD12 GPX1 HRK PGRMC1 PEPD MT-CO2 TUBA1B STX1B ATP2A2 MAP2K1 FGF12 ARL6IP5 LMO3 AURKAIP1 SLC9A6 YWHAG ATP6AP2 SUMO3 FAM71E1 TESPA1 SLC22A17 DGUOK ATP6V1A CMAS MAPRE2 STK39 CISD1 SNRPN BRK1 SLC25A4 SCN1A PTMA SNX17 MT-ND1 NEFL MDH1 FAM43A NDRG3 ITM2B NDN FARSA RPL38 PPP3CA CDH8 CAMK2N2 OXR1 PMEPA1 SLC6A1 HS6ST2 TCEB2 MT-ND2 WASF1 BAG4 RTN3 MAPRE3 RCAN2 CYFIP2 CCK MZT2B REEP5 PGD TMSB10 CADM2 YAF2 SCD ATXN10 GOT1 CDC42SE2 COX7C HMP19 POLR2K NGFRAP1 AP2B1 RAB6B CHMP5 ITFG1 PJA2 RAD23B COA4 PKM CD99L2 TSPAN4 FKBP1A NPTXR KLHL5 CTNNA2 SHISA6 STMN1 MT-ATP6 MTRNR2L8 STMN4 LRRC59 SCN3B SERPINI1 CTU2 NDUFA5 MAF FLT3 SYT4 ATP5A1 CSDE1 TUBA1A FBN2 TSC22D1 NRIP3 MZT1 SPARC MAFB PPP2R1A HAPLN4 DNER STXBP1 RPS12 NDUFC1 PENK COPG1 TAGLN3 SPOCK2 MSMO1 CXXC4 THSD7A NDUFA13 NIPA1 HSPA4 ATP1B2 CNRIP1 SST RPL37A IDS SERF2 ARF5 APBB1 MRPS21 NDUFB3 SNX3 CMPK1 MTATP6P1 GPR158 MTRNR2L12 CNTNAP3 MT-ND4L DLD KCNF1 BTBD11 ARL8B KCNAB1 RPL8 ASPDH RTN1 KIF21A WSB2 DKK3 PACSIN1 SCAMP5 TGOLN2 FBXO2 TMEM14A MT2A SYTL2 ZNF385D RAB3B MYO5B RPL7 PSMC1 RP11-20I23.1 MIF NGRN CFH RPL17-C18ORF32 C18ORF32 ATP6V0C RPL18A RPL36A FTH1 AC244489.1 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ATP6 CADM2 ZNF385D RPL37A SNAP25 MT-CO2 MT-CO3 SUMO2 SPARCL1 EFR3A GNB1 CHN1 RPL32 ATP5J2 TMSB4X MMP24-AS1 MT-ND3 MTRNR2L12 MT-ND1 TUBB2A ARL6IP5 CALM2 TIMP2 APP TMEM14A SYT1 GPM6A MYL6B HNRNPA1P40 MT-CYB SOD1 SERINC1 TUBA1A FBXO2 PPP3CA SCG2 RPL41 VSNL1 PPP2R4 RPL35 RLIM NAP1L5 THY1 SLC39A10 GNG3 NELL2 SCAMP5 GAP43 CALM3 MRPL20 CPE BEX1 SST CLDND2 BRICD5 TSPYL4 MTRNR2L1 NDRG4 GRIK1 IPCEF1 TMEM65 MAPRE3 UBA52 HS6ST3 CHCHD2 PNMA2 MAGED1 NME1 ATP5A1 MTRNR2L8 RNF144B LINC00087 NDUFA13 SCD5 RTN1 TENM1 SERF2 COX6A1 TMOD2 PTMA RELN TMEM147 RPS28 RPS15 SEZ6L2 TSPYL1 HMGCS1 FRMD4B NFE2L1 ATP6V0C OCIAD1 GRIN3A RPS4X SCN3B JUND RPS3A BCL11B FTH1 TOMM22 SPOCK3 NDUFB8 MAGEH1 NEGR1 ARHGDIA CNIH3 WDR47 MT-ND2 NAT8L MTATP6P1 ATP6V1F MAP1B TSC22D1 SNAPC5 RPL23A FIS1 NDUFA1 IFT52 SLC25A5 CKB SYNPR FGF12 NDUFAF2 AP2B1 VAMP1 SYT3 MT-ND4 SNCB RFK RHBDD2 RP11-20I23.1 CDK14 STMN3 NRIP3 CAMK2G ATP2A2 GRIP2 PPP2R2C RPS12 ATP5E PLP1 GABARAPL2 UQCRH ATP6V1G1 MORF4L2 NCALD MMD POLR2I RPL38 PPP1CB PSAP PSMC1 PRKAR1B GPR126 TUBB3 IDS RP11-219A15.1 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 MT-CO1 MT-CO2 MTRNR2L1 SYT1 SST MTRNR2L12 MT-ND2 SERF2 MT-ND1 TMSB4X MT-ATP6 PTMA SPARCL1 TSPYL1 HSP90AA1 CLU PCSK1N ATP1A3 MAFB SNAP25 LMO3 DYNLL1 CAMK2D ATP1B1 CNTN1 TUBA1A TSC22D1 RSL24D1 RTN3 PNMA2 MTRNR2L6 IDS CPLX1 KCNC3 TRMT112 RPL11 PDCD5 SLC7A5 SERP2 STMN4 C12ORF49 MT-ND4L PPP2R2B NPAS3 TUBA1B PRDX1 VSNL1 HTRA1 PSMB5 CMPK1 YWHAB DNER SPCS2 MRPS28 TOMM7 RP11-195F19.5 EPAS1 SLC39A10 KIF5A S100A10 WDR47 ZFAND5 SPOCK2 UQCRFS1 PEA15 MAP4 SUMO2 VEGFA SCAMP5 NGEF QKI COX17 DPP6 HMGCR GRIK3 ELAVL2 RPL7 EPS15 RAB3C CALM3 BEX1 SNRPN KIF1A FGF12 INPP5F SUCLA2 CDH13 MIF PPP2R2C H2AFZ NAP1L3 RPL12 PLCB1 STXBP1 SERINC3 GLUL INA STXBP6 PLD3 LHX6 RCAN2 JUN UBA1 FAIM2 NGFRAP1 FAM96B PRNP UCHL1 MLLT11 SCN1A TMEM35 RBX1 ACTB FASN CADM2 REPS2 OPA1 ACTR1A PDE1C CD24 MT-ND3 CREG2 BSG CALM2 CDH8 OCIAD1 MYO1B HPRT1 JUND C12ORF57 HNRNPH2 SNCG OXR1 MYL12B RTN1 BEX2 NDUFC2 HSD17B14 RPS15 PREPL TSPAN7 ATP1A1 CLTA DYNLL2 FTH1 MTND1P23 COX7A2 DLX1 CRYAB NDRG4 GRIN1 GNB1 CHMP5 VAMP2 RPL32 STMN1 RPS6 WSB2 GNAQ ARX APLP2 ITM2B NPTN CYP26A1 CISD1 ATP6V1G1 RFK RPL15 PNMAL2 CLSTN1 GPM6A RPL36A CALM1 MTRNR2L8 NRGN ALDOC PTPRN2 MT-CYB CTC-575D19.1 SSBP3 YWHAH ATP6V0C GABARAP IFI27 CFH RP11-20I23.1 TF RPL21 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO2 MTRNR2L12 CHN1 MT-ND4 GRIK1 MTRNR2L6 RTN1 SST ATP1B1 MTRNR2L8 MT-CO1 CLDN11 VSNL1 NPTXR CREB5 PCDHA4 PLP1 SYT1 TMSB4X ACTB RPL38 MAP7D2 SLC25A22 GPM6A SYNPR PTGDS MT-ND3 ZFAND5 RTN4 MAP2K1 TLN2 ATP6AP1 CKB MAL MZT1 ATP1A3 DGUOK RPL11 UHMK1 LIMK1 RPS15 CALM2 UQCR11 EDIL3 UBA52 RTN3 IDS ATP1B2 TRIM37 PCSK5 PDE1C TM6SF1 EPHB6 ELAVL2 CALM3 SLC22A17 PIK3R1 ARL6IP5 GRM3 NDFIP1 TUBA1A MRPS21 ISCA1 BCAS1 GAPDH TSPYL1 COX7B MLLT11 SKP1 TPT1 COX5A PDCD5 DIRAS2 OCIAD1 RABAC1 TPI1 ITFG1 ZCCHC24 SOD1 SLC25A4 RPL8 ETS2 ZNF536 RPS28 TMSB10 PCSK1N GPR158 VAMP2 PRNP GABARAPL2 PPP2R1A SCD5 TBCB NSDHL TMEM88B NAPB APP SLC9A6 SCN2B MT-CO3 SPOCK2 SHARPIN RPL26 FAM3C KCNIP1 CSDE1 CISD1 VDAC1 PNMA2 UBE2E3 CSRP1 RPL37A UQCRH SALL2 SPOCK3 CALM1 VEGFA TSPAN7 RIN3 NKX6-2 APLP1 SLC6A1 HPCA KCNAB1 DNAJB6 PPP3CB ISCU ESYT1 PLAUR TUBB4A PPP2CB FKBP4 RPL32 PLOD2 ITM2C PTPRT CLU SEPP1 SCN3B PDE9A SNAP25 RPL31 MT2A CHMP4B NAP1L5 FAM84A ATP6V1B2 CA2 OXR1 RAB11A GJA1 DPYSL2 ATP6V0C RAB3B GABARAP RP11-20I23.1 RPL13A HNRNPA1P40 PLEKHD1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B HNRNPA1P40 OXR1 SYT1 SST GRIN3A GAD1 SNAP25 FAIM2 GRIK1 CHN1 EIF1AX CALM2 PSAP RTN3 VGF FXYD6 ATP1A1 OCIAD1 MAP1B GPM6A TSPAN7 RPL13 CLTC PRNP RPS27A SYNPR NDUFB2 SLC39A10 NAPB ARL8B MYL6 VSNL1 LANCL1 SEZ6L2 WLS MT-ND3 DPYSL2 RPL17 TUBD1 ACTB DCN TCEAL2 PCDHGA5 TPI1 KCNAB2 ITM2B PRKAR1B NDUFB5 CYFIP2 ATP1B1 RPL41 KIF1A PSMD8 CALM1 SYNGR3 ATP5G1 SPP1 FTH1 ATP6AP1 MT-ND4 GDI1 MT-CO2 PFN2 CAP2 RELN GAPDH SYT17 MPPED1 SKP1 MAPK1 TMSB10 HSP90AB1 RPL37A RPL21 UCHL1 RP11-111M22.2 RPL10A PRKACB GRIK3 VAMP2 NR1I3 NGRN TBC1D15 UBE2M CYB5R3 DIRAS1 ARHGDIG DYNLL1 MOXD1 SCN1A USP5 YWHAB NARS RPH3A PRUNE2 RAB6A ENSA MAP1LC3A COX7A1 KCNK2 TMTC4 SYNGR1 SSBP3 VPS35 TUSC2 ATP5I ACTR1A MAPKAPK2 SEPW1 HINT1 COPS7A GNAQ TMX4 USMG5 MYL6B SHISA6 ATP6V0B STK31 PNMA2 GABARAPL1 RPL8 GRPEL1 MT-CO3 APLP2 TCEAL3 DIRAS3 GSTT1 SLC1A2 NHP2L1 NDUFB1 TIMP2 GDA CPE CIAPIN1 MAST3 KIF5A GAD2 ENO2 CAB39 RPS10 RPL31 RPS15 CRHBP RTN1 PPP3CB PRKCG PI4KA CEND1 QDPR SYNJ1 ATP5J2 DCAF12L2 ATP5H SULT4A1 HSP90AA1 UQCRB RCAN3 WASL WASF1 PTPRM UBB PGM2L1 CADM3 TMA7 PAM NDRG4 EXTL2 TRHDE PPP2R1A COL6A1 REEP5 EIF1 TMSB4X ATP6V0E2 CHL1 SCD5 VWA1 EFHD2 PPP1R9B RPL26 RAPGEF5 NPTN SYT4 ATP6V1F DCC RPL11 BNIP3 SCN3B GRINA PITHD1 THYN1 TOMM20 CLU PHYHIPL NCALD C1ORF52 RPL39 TPT1 CALM3 CPLX2 NPY TRAPPC1 STUB1 VDAC3 CHMP4B TSC22D4 ENO1 UQCRC1 CAMK2G CBX6 PLP1 DPY30 PCDHA4 NDUFB10 CDH22 ATP9A TERF2IP RPS3A H2AFZ HMP19 DMTN ACTR10 SLC12A5 NREP PRKCE RTN4 SLC6A17 OAZ1 ARPP19 AP1S1 DGUOK NME1 RPS5 RPS2 NDUFB8 FBXL16 PREPL FGF12 PDE1A TOX3 NHP2 TEX2 RAB3C LHX6 ARL6IP1 KIF21A ATP6V1E1 HCN1 FTL COPS8 BASP1 PRKCB TPPP ITFG1 STMN2 RPL3 POMP TMEM59L CACNG3 SPTBN1 TUBA1A VCAN ARL6IP5 ATP6V1A ACTR6 NPTXR RPL35 FAM89A NFE2L1 RSPO3 LYSMD2 DYNC1I1 PIK3R1 ATP6AP2 HMGCR UBQLN2 ATP2B2 ASAP1 TUBA1B ALDH5A1 S100A6 ATP5J APLP1 RPL32 SYN2 EGR1 PNKP INSIG1 NDUFA13 BSCL2 ARF5 RP11-20I23.1 ATP6V0C SERF2 GPR78\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L12 ATP1B1 RAB3IP MTRNR2L1 RELN SYT1 THY1 ROBO2 HSP90AA1 SPARCL1 CFH OPCML DMTN CHN1 ATP1A1 ACTG1 MAF PDE1A RNA5-8SP6 PPP3CB GRM3 MT-ND1 SNAP25 ATP1B2 HSP90AB1 SRP14 CD24 BRK1 GAD1 SCN1B MAPRE2 PRDX5 RSPO3 KCNC2 CNTN1 CRIM1 SARAF MRPL52 RPH3A MOXD1 SCN1A MORF4L2 ITM2B MT-CO1 MAL2 CAMK2G MAP1B SLC7A8 SMIM12 NR2F2 ALDOC SPCS2 SLC25A4 SPOCK3 FAT3 RPL35 POLR2L TSPYL4 RTN3 JOSD2 CALM1 NAPB NPAS3 KLHL5 TAC1 CAMK4 CD99L2 BSG CPLX2 NDUFB10 MT-ND4 HNRNPA1P40 ZNF385D RAB3B SYTL2 TBC1D15 DNAJC21 MTRNR2L6 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 SNAP25 MT-ND2 NCAM2 MT-CO3 TSPAN7 RTN4 PLCB1 TERF2IP NDFIP2 SYT1 GDI1 MT-ND1 ATP6V0B PAM ELAVL4 MT-CYB DPYSL2 SLC9A6 CALM3 CYFIP2 CHN1 RAB6A KRAS SPOCK1 TMSB4X ATP1B1 RTN3 SYT13 STMN4 UBC TLN2 CA11 TUBB4A PENK CLPTM1 WDR47 SLITRK1 CHL1 JAKMIP1 TMSB10 SPON1 SCAMP5 YWHAG MT-ATP6 KIAA1024 RAB3C NPAS3 RAP1GAP2 FAM163B TRHDE PARM1 UCHL1 QKI RTN1 TSPAN33 RLIM DNAJC5 SLC24A2 ARL6IP1 GAPDH WBSCR17 PPP3CA APBB1 RPL35 MORF4L1 PI4KA PSD3 DNAJC6 MT-CO2 SPOCK2 SLC12A5 MTCH1 VAMP2 ARHGAP35 RP11-111M22.2 PKM FAM149B1 GCHFR PEBP1 ATP1A3 IMMP1L YWHAB REEP2 ATP1B2 PNMA2 FAM3C CCDC184 INPP5F SPOCK3 FXYD6 KIFAP3 SNCB NDFIP1 HSP90AB1 MTRNR2L1 PRKCG FAIM2 PCDHA4 PJA2 ATP6V1B2 RAB7A LAP3 PSAP ERBB4 SERPINI1 SYT5 ASAP1 PAFAH1B2 PRNP HSP90AA1 SST SNRPN OPCML CALM1 DNAJA1 MYL12B ATP2B4 SLC6A1 CADM2 ARFGAP2 PREPL PLD3 NPTX1 GRIN2A MAP1A KIAA1211 CLIP3 RPS12 SARAF PTMA SNCAIP ZBTB18 ITM2B RPL15 SUSD4 KCNC2 ARL4C SIRPA BANF1 MAFB PTPRN2 MAP7D2 RPL39 NAPB LSM4 TMCC3 UQCRC2 SMS RPL32 PCDH19 TSPYL1 NCOA4 KIF3C SYN1 TMOD2 SPARCL1 ATP6V0E2 PINK1 CD9 LGI3 FGF12 DKK3 PTPRM TCEB1 RPL6 FBXL16 HSPA8 YWHAZ LPPR4 ACTB RAB3B ZNF385D SYTL2 NGRN ALDOA ARF5 RPL41 RPL26 RNASEK-C17ORF49 TBC1D15 RPL13A PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 MT-ND4 SST SYT1 MT-CO1 KCNC2 SYNPR MT-CO3 EPHB6 RPL36A MAP4 RPS15 MAF HDDC2 GABARAPL1 OLFM1 MT-CO2 VAMP2 CADM2 CHL1 BEX2 SOX6 CALM1 GRIK1 PAFAH1B2 UBC SNAP25 VSNL1 PREPL RAB3B RPS4X RPL13A RPL31 PLOD2 TF BIRC5 RTN3 SYT11 ACTB PGK1 RANBP1 PCDH19 SLC22A17 NGFRAP1 PPARGC1A PKM MORF4L1 NFE2L1 RPL39 MT-ND1 CHN1 RPL12 RASGRF2 COPS8 NDUFC2 HRH3 HMP19 ACTR1A OXR1 RPS10 TLE4 ATP5I CDC37 KCNAB3 RPL7 FXYD6 MAP1B NRIP3 RAB3IP CLTA NPTXR C1ORF56 ZCCHC12 PLCB1 SNAP91 SELM NTNG2 PDE1C COX6A1 SRP9 MT-ND2 DCTN3 GAD1 ATP5A1 OR6D1P PFKP ATP6V1A SLC6A1 VPS35 DCTN1 RTN4 WFS1 SLC38A1 TMSB10 GAD2 ISCU CLEC2L TGOLN2 SPOCK3 TRIM37 TIMP2 TSPAN7 NDFIP1 PTMA SRP14 MT-ND3 RPS28 MTRNR2L1 TPPP GUK1 ATP1A3 NAP1L3 RPL37A SERPINE2 MT-CYB TMEM130 SNX17 PPP3CA ATP6V1B2 HSP90AB1 SAMM50 GNB1 TMSB4X JUNB AC244489.1 APLP1 NRGN CITED2 REEP2 RAB27B MT-ATP6 KIF5A CTSD DNER YAF2 SERP2 PJA2 CLSTN1 CYCS IDS OAT NCEH1 RPL11 MAFB TUBB4B SPARCL1 CDKN2AIPNL SLCO4A1 RELN SPCS2 TCEB2 ATP6V0B RPL35 RRAGA GAP43 ROBO2 RPL3 AES BASP1 APP COX7C TMTC4 RPL10A COX14 NAT8L RP11-219A15.1 CFH NSF NR1I3 RPL6 ALDOA HNRNPA1P40 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST GRIK1 MT-CO1 SARAF RTN1 SNAP25 ELAVL2 MAF RTN3 FXYD6 TBC1D15 KLHL5 INSIG1 TMSB4X GPM6A TMEM258 EIF4A2 CAMK2G OPCML OAZ1 SSBP3 EIF1 TUBB2A PSAP FAIM2 PPP2R1A TRHDE RPL36A GRIK3 LL0XNC01-16G2.1 MT-CO3 CDC37 SERINC1 INPP5F CADM2 UCHL1 SYTL2 RAB3B LDHB PTPRN PSMC3 TMA7 BEX4 PLOD2 RPL31 ELAVL4 SLC30A3 RPL38 GDA DNAJA1 C9ORF16 CORO2B PRKACB HSP90AB1 YWHAG MT-CYB TPPP RAB31 APLP2 PEBP1 THY1 LRRIQ3 CLIP2 C19ORF53 ATP6V1E2 TMEM59L PPP3CB RPS4X GRIN3A ARF5 STMN1 SCN3B BSCL2 CTNNB1 EIF1B PSMD12 CREG2 ATP6AP1 RAB3C GAD2 MT3 BEX1 MTRNR2L1 PACSIN1 SYT1 ASB13 BEX2 CKB FBXL16 NGRN MT-CO2 SLC26A10 SERINC3 ATP5G1 CDS1 YWHAQ MANBAL ATP5G2 ROBO2 COX4I1 AP3S1 DYNLL2 BEX5 FAM84A GAP43 ACOT7 ACTG1 STXBP1 PCMT1 ANXA7 ATP1B1 SEPT4 MRFAP1 ATP1A3 APEH SLC25A5 KIF5A PNOC ARL6IP5 SLC7A1 RAB3IP NAPB CNTNAP3 PCBP1 LCNL1 NDUFV1 MT-ATP6 RPS15 ENO2 SYN2 CALM2 PRKAR1B SPARCL1 OXR1 CLU BCAP31 VSNL1 EID1 ATP1A1 GAD1 RHEB RP11-454L9.2 ETFB SPTBN1 ZFAND5 PSMA7 BIRC5 CALB1 RAB6B TERF2IP CALM1 SCD5 ARL4C NRSN2 VAMP2 TOMM7 EPS15 DYNC1I1 SCG2 RTN4 RPL11 CNDP1 ARF1 PPP2CB SLC12A5 DNER NDN NMU STX1A PGRMC1 FAM219A RPL37A NR1I3 PCDH19 MAP1LC3A PKM ARL8A NPTN ITM2B TMSB10 FRMD4B RPS10 PVRL2 NDUFA4 ESYT1 C8ORF4 CNRIP1 PHYHIP GHITM RP11-111M22.2 DPYSL2 NDRG4 CETN2 EGFL7 NMNAT2 RPS2 LMO4 MTCH1 IDS AC244489.1 RPL21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 SST MT-CO1 MT-CO3 SYT1 SNAP25 MT-ND1 NPAS3 GPM6A SLC6A1 EIF4A2 FTL MT-ND3 MT-CYB SPARCL1 HSP90AA1 PRKAR1B MT-ND5 PTMA GAD1 CALM1 MT-CO2 TUBA1B CLTC NAP1L3 YWHAH GAPDH SYNPR RAB3C SARAF EDNRA RTN3 PFDN1 RPL31 COX4I1 VDAC1 MT-ND4 NTN4 TRHDE TSPAN7 ATP1B1 TMSB4X STMN2 CALM2 CDH13 FTH1 ESCO2 FAIM2 ROBO2 PRKCG RPL6 GNB1 EFHD2 SLC35B1 UBE2N UQCRB GRIN3A NDUFA13 PRNP EDF1 ENO2 NPTN BEX1 ACTB EPHB6 PIK3R1 CKB PPIA S100A6 PEG10 RAB6B RPL37A MAF ARX GNG3 COX7A2L UBE2QL1 TPT1 LDHB MAFB CEND1 TSPYL1 PPP1CB RTN1 PJA2 ARF1 PPP2R2B OXR1 SERPINI1 FXYD6 CDC37 NDRG4 TSC22D1 CADM2 RPS28 RPL38 IDS SERF2 TUBB3 UBL5 GRIK1 WBP11 STXBP1 TPGS2 BANF1 QKI RPL26 ZCCHC17 RPL13 NDUFC2 CAB39 RPL10A DUSP1 OLA1 TCEB2 SLC24A2 MAP1LC3B RPS15 ATOX1 RPL35 SMIM1 CXXC4 FKBP8 APLP2 EFR3A LAMTOR1 PRIM1 ELMO1 MIF DYNLRB1 BEX4 NELL2 GRIK3 NCALD MORF4L1 KRAS ARPC4 DYNLL1 PRKCB MAPK1 COX6C DIRAS1 COPS7A ITM2C PEBP1 NELL1 CNR1 ATP6V1G1 C2ORF80 MTX3 ARL4C TOX3 THY1 RPL15 PPP2CB SCN1A MARCKS CAP2 SYT13 MTATP6P1 MFN2 MORF4L2 BAD UBC GAP43 TMEM11 RPS4X NXPH3 RP11-195F19.5 GABARAPL2 NDUFA5 CYP26B1 NDUFA4 RAN DIRAS2 RCAN3 PRKAR1A SLC12A5 UQCRQ AP3S1 COX5B CHN1 H2AFZ POMP RPL13A DMKN SNRPN RTN4 CHP1 TUBB2A ATP6V1C1 LANCL1 TCEAL7 GDI1 ABHD14A NCAM2 NGFRAP1 MAP1B GPRC5B CSDE1 CALM3 NAA38 CORO2B RELN ACP1 PRKCE GLUL TIMP2 NDUFB11 SEPW1 PNMA2 TTN ATP5B SYNGR3 RPS27A MGST3 SCN3B MYO1B TUBB4B VSNL1 ATP1A3 PIN1 GPCPD1 NHP2 FAM134A YJEFN3 MAP2K1 STMN3 ARL6IP1 MBOAT7 RP11-697E2.12 MAPRE3 CADM3 SUMO3 FAM89A SMIM13 SOX6 DYNC1I1 RPL32 ATP5E C10ORF10 JUN COA4 ATP5G1 NDUFB8 KLHL5 STXBP6 CCT5 CPE BCKDK GNAQ TCEAL5 SPOCK2 SOD1 NEFL SYT11 JUND SNTB1 COX7A1 HILPDA PGK1 COX6B1 RAB3A ITFG1 NSF RPL39 TPI1 NAP1L2 RANBP1 CLTA CAMK2D ZNF880 SCD5 BASP1 PRUNE2 INA ALDOC PNOC C14ORF132 RPL8 SLC9A6 PKM UCHL1 APP ATP6AP2 ELAVL2 SLC6A17 DYNLT3 DLX1 C19ORF53 USP5 DPYSL2 CLSTN1 THOC7 EIF1AX ZFAND5 NDUFB2 SERINC1 PRDX3 TMA7 SYN2 PRKACB RAP2A RASGRF2 RPL11 GADD45GIP1 C9ORF16 SUB1 MAGEH1 FAT3 EID1 MT-ATP6 CAPZA2 UBB PACSIN1 FIBP RPL23A OCIAD1 DCLK1 PREPL ENC1 SYTL2 RAB3B ZNF385D HNRNPA1P40 GABARAP C19ORF33 AC011043.1 DNAJC21 TBC1D15 ATP6V1G2 RPL21 TUBB RPL7 CYB5R3 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 RAB3B SNAP25 MT-CO1 MT-ND2 PREPL SPARCL1 MT-ND4 RPL32 RELN TMEM130 TSPAN7 GAD1 ATP6V1B2 RTN4 TRHDE PCDH15 RTN1 RPS15 YWHAB ITM2B MRAS OXR1 IDS EFR3A RPL13A CTNNA2 SYT13 CNTN1 PLCB1 PPP3CB FXYD6 TMEM59L MARCKS RTN3 PSAP UCHL1 CLSTN1 SLC12A5 ACTB PNMA2 ELAVL2 MT-ATP6 SCN1A APP DNER GPM6A PIK3R1 GAPDH TBC1D15 PSMC3 PITPNA ATP6AP1 CDH8 TIMP2 NFE2L1 PTPRN CACNB1 CNR1 BCL11B CACNG3 PRKCB TSPYL5 RPS5 PCSK1N DPY19L1 RPL39 TMSB10 UQCRH ISCU FKBP4 SUMO2 PPP2R1A OLA1 STXBP1 DMTN TCEAL2 SYNGR1 PKM FKBP8 SYT1 ATP1B2 NARS STUB1 DCC NAP1L5 ZNF503 YWHAQ TUBA1A KCNC2 HMP19 PCDH8 ENO1 RPS6 RAB31 KIF5A MAPRE3 ATP1A1 EIF1 RPL38 KIF1A RPL37A RPL17 HMGCR MT-ND4L MAP2K4 RAB6A RPL36A RPS28 GAPDHP33 RPL8 AURKAIP1 CALM3 RPL12 NREP ATP6V1A CXXC4 PACSIN1 PAFAH1B2 TOMM7 NUDT21 NELL2 VAMP2 EIF4G2 TSPYL1 UQCRQ SPATA13 POMP TUBB2B NRGN CYFIP2 MT-ND3 RAB4A COA3 PLD3 APLP2 BSN C11ORF31 TPD52 ATP2B2 MARCKSL1 GSTP1 NAP1L3 ACTR6 CTBP1 DRAP1 SEPT4 RP11-111M22.2 VAPB SYT11 PARM1 RCAN3 ATP6V1C1 TRIM37 STMN1 RPL13 RP1-152L7.5 LMO4 ELMO1 PNMAL1 RPS27A PTGES3 SLC6A1 PRKCG MYL12B PPP3CA TGOLN2 OR6D1P NGFRAP1 HSP90AB1 UBC SLC1A3 CHL1 TUBB2A TBCA TCEAL7 ENOPH1 BEX1 PLCH1 MAPRE2 COX8A ENO2 KIF21A NDUFA11 RPL17-C18ORF32 CREG2 DPYSL2 SEPW1 NAPA NCALD CKB RAB3C C19ORF70 PHPT1 RPL11 APLP1 RPL6 EFHD2 C14ORF2 SNX10 ARHGAP35 SUB1 SLC25A6 SERINC1 MTRNR2L12 FAM43A CCK C1D STXBP6 COX7C RHEB NHP2L1 YWHAG SLC25A5 TMA7 PRNP CALM2 PCDH18 OPA1 ATP9A PPP2R2B NEFL FAM43B NDUFB4 CAPZB VDAC1 UBE2L6 EDNRA TF ALDOA CKLF MAP1LC3B RP11-20I23.1 ATP6V0C RNASEK-C17ORF49 EPHB6 RPS3A RPL41 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND3 MT-CO3 MT-CO1 MT-CYB MT-ND2 MT-CO2 MT-ATP6 MT-ND1 MT-ND4 SYT1 HSP90AA1 MTRNR2L12 CDH13 SNAP25 VAMP2 MAP1B CHN1 TBC1D15 CADM2 SPOCK3 GPM6A CLIP3 SYNPR CSDE1 SPOCK1 MT-ND4L SPARCL1 TRHDE RTN4 RAB6A SERPINI1 GREM2 ENO2 RAB3B CREG2 ATP1B1 ATP6AP2 STXBP1 TMA7 LRP1B TMEM200C PPIA ATP6AP1 SLC24A2 COX6A1 MTATP6P1 CITED2 INA RAB3C TMIGD2 FXYD6 SERINC1 PREPL NFE2L1 ARX TSPYL1 CNTN1 EPHB6 RTN1 MTRNR2L1 SLC12A5 PSMD2 GAD2 SARAF TOMM20 OXR1 MTCH1 NHP2L1 CLSTN1 RAP1GDS1 REEP5 PLCB1 TMSB4X SPARC CALM2 IDS HINT1 TUBB3 EPHA6 EFR3A APP DNAJC6 MAP2K4 PRPS1 KCNC2 GAD1 CALM1 RTN3 BIRC5 CFH SYTL2 NR1I3 RPL12 RPL6 STMN2 UBE2M SRM CNTNAP5 GRIN1 ARL6IP5 UBA52 TMEM65 FAIM2 MDH1 GABRG1 TOMM22 FXYD7 YWHAG RP11-111M22.2 ATP5G3 MAPRE2 BRINP3 ZNF174 COX8A SLC6A17 MRPL47 RAB3A ITM2B SCN1A SNX3 CD59 NDRG4 SST PNMAL1 GNG2 NDUFA8 PFDN1 VPS35 ATP1B2 UQCRFS1 ROBO2 RRAGA ENO1 UCHL1 FABP5 SKP1 POLR2K MARCKSL1 TRMT112 ATP1A1 ATP6V1B2 NBL1 TMEM150C LHFPL3 CMAS SKAP2 GNAQ DKK2 ELMO1 INSIG1 RNA5-8SP6 SOD1 SELM ARF3 PCDH17 NDFIP1 KCNAB2 ATP5F1 DCN WSB2 TSPAN7 NAP1L2 DPYSL2 ATP5G2 FSTL5 C19ORF70 RPL13 SCN3B BCAP31 TUBB4A RAB3IP KIF1A WARS CDK5 ASCL1 PGRMC1 PDZD11 ARL4C TPRG1L ATP5J TMEM230 PEG10 ELAVL2 CYCS RPL35 APBB1 MAF CDK17 CALM3 ALDOC PTPRM SPTBN1 MGST3 PGK1 COX5B TUBA1A ACTG1 NAP1L3 TIMP2 IQSEC1 BASP1 AZIN1 CNP STK24 ATP6V0E2 NPAS3 QKI RPL15 DIRAS1 ATP5A1 CX3CL1 FAM84A VSNL1 NAP1L5 VSTM2L NTHL1 PAK1 ATP2A2 WASL PRNP LOX MTND2P28 ACTB MAFB DPP6 RPL32 ATP6V1E2 HNRNPH2 PFN2 TMEM117 NCDN GRINA DKK3 ATP6V1G1 SNRPN PTMA NTN4 STMN4 LMBRD2 RPL37A HSP90AB1 OR6D1P MTRNR2L8 HPRT1 ELOVL7 FTH1 GHITM PIN1 DSTN ITFG1 SOX2 STUB1 RAB11A KLC1 CYFIP2 MAP7D1 PSAP PAM SYNPO CAB39 FSCN1 SYN1 GRIN3A SLC17A8 LIN7B DDAH1 TUBB2A CA11 SUB1 TMEM59L LYNX1 POLR2I RPL41 PIEZO2 RAB1A ARL6IP1 CAPNS1 SLC6A1 PPP2R2B TMEM35 RGS12 ATP6V0C NDUFC2 MTRNR2L6 UQCRC2 RP11-20I23.1 ATP6V1G2 CYB5R3 PCDHA9 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NPY RAB3B SST CORT SNAP25 TBC1D15 NOS1 RPL32 ATP1B1 RPL38 CTBP1 ELAVL2 GRIK1 CALM2 FAIM2 RPL31 TMSB10 RPL13 CRHBP ATP1A1 RPL15 GAPDH SYT1 MAP1B ZNF385D NDUFA1 SPOCK2 PTMA RPL41 NGFRAP1 DHCR24 ATP9A DSTN EIF4A2 ARPP19 CLDND2 UBQLN2 CHN1 ACTG1 DNAJB6 CPE GUCY1A3 HSP90AB1 RPL35 GDI1 RAB3IP SKP1 FAM43A EPB41L3 ATP6V0D1 GPM6A RPS15 ITM2B HMGCR MT-CO1 PCDHGA6 SCOC TMSB4X EPHB6 MORF4L1 TMX4 SOX2 FSCN1 KLC1 RPL17 RPL17-C18ORF32 IDS SNCA ANKRD34B TSPAN7 GHITM REPS2 SERPINI1 PGRMC1 EPS15 KIF21A VGF MLLT11 ARHGAP35 UQCRB UTRN VPS35 TSC22D1 GNG3 ENO2 MPC2 YWHAB PGM2L1 C12ORF57 SOX6 TUBB4B SPARC NDUFB2 SYT4 MT-ATP6 BEX4 OR6D1P CHMP4B MSMO1 PDE1C TMEM14A SELT BCL11B RPS6 HEY1 AP2M1 GTF3A COPG1 NPY2R TENM1 RELL2 RHBDD2 THOC7 AK5 PTPRS STMN2 COL24A1 MAP7D1 NAP1L5 MAFB VSTM2A SLC9A6 ATP2A2 ARL6IP1 ATXN10 PSAP UHMK1 LHX6 C19ORF70 PTPRM SCN1A MAP7D2 TMA7 EDF1 RPL39 NDUFB5 TMOD2 SYN1 ALDOC TERF2IP PPIA THY1 FBXW11 TGOLN2 CYCS RPS4X RPL7 PSMC1 GUCY1B3 APLF RPL26 NDRG4 NDFIP2 TUBA1A BEX2 APP PDZD11 C14ORF2 TPGS2 CADM2 UQCRQ ZFAND5 NUP37 ATP5J2 FAM174A SMIM12 OPCML RFK DPYSL2 TMEM130 TSPYL4 CREG2 NXPH2 RPS28 BCAT1 ADORA1 RPL3 EID1 ASAP1 UBE2L6 MTHFS CISD1 RSPO3 INPP5F RTN1 HSP90AA1 CLU PET100 GRIN1 ATP5F1 GABRG1 KCNK1 FASN PPP1CB SARAF ATP5G2 MAP1LC3A SYT3 NUAK1 ACTB CHRNA6 MGST3 PSD3 SYN2 LAMTOR1 PCSK1N MRAS BRICD5 OCIAD1 PRKCG CDK5R2 FAT3 ATP6V1A ISCU UBC DCTN1 TRMT112 SPOCK1 RTN4 PEBP1 TBCB ATP5E POMP FRMPD2 SLC38A1 HILPDA GNAQ RNF11 FTH1 RHEB PAFAH1B2 PCBP1 RPS12 SYNJ1 CAPZA2 TENM3 C1ORF56 FNDC4 OLFM1 UBA1 GABARAPL1 MRPL12 MOBP GPR88 SCAND1 RTN3 ATP5B SULF2 NDRG3 ESCO2 RPL36A SERF2 RP11-20I23.1 ATP6V0C BSCL2 NGRN MIF RPS3A AC244489.1 BIRC5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST SYT1 RPL35 RAB3B MT-CO1 RPS28 SNAP25 HSP90AA1 MT-CO3 RPL39 MTRNR2L12 ELAVL2 STXBP1 EIF1 TMSB4X RPL21 NRCAM SYT4 PPIA THY1 RPL36A SERINC1 GRIK1 GPM6A PEBP1 SERF2 SLC6A1 RPS12 PRKCG SCAMP5 RPS10 SLC12A5 UQCRQ MTRNR2L1 NEGR1 TMEM130 TMSB10 CTBP1 GAD1 ATP9A MT-ND3 CHCHD2 FAIM2 YWHAG CNTN1 ATP1B1 RPL11 HSP90AB1 CALM3 DCLK1 JUND DYNLL1 CHL1 TUBA1B SPOCK2 RELN PRNP MT-ND4 EPHB6 RHEB FTH1 WLS NGFRAP1 ELFN1 PEG10 LHX6 CORT SPARCL1 RPS27A MT-ND1 ITM2C CALM2 KIF1A TF ARFGAP2 SPOCK3 PSMA7 PEA15 ALCAM ADAMTS6 GABARAPL2 KLC1 CD99L2 MTX3 GUCY1B3 RP11-195F19.5 RAB7A SELM DNM3 BNIP3 ATP1A3 NDUFB2 VDAC2 SNRNP25 CACNA2D2 PSMC5 TRIM36 C14ORF2 MAPK1 ANXA6 PPP3R1 DYNLT3 RPL32 SARAF NCDN MAGED2 TMTC4 RTN4 MT-CO2 PARM1 FXYD6 POMP EIF4A2 ASPDH TSPAN7 TMEM14A NAP1L3 SYNPR CTSD RP11-111M22.2 GNG3 CADM3 CDK5R2 DKK3 DLX1 MAPK8IP2 UROS CYP26A1 HSD17B14 CTNNB1 NDUFA12 TAC3 NDFIP1 STMN4 TMTC1 DNAJC5 ATP6V1B2 OXR1 BEX2 RPS2P45 ARPP19 CHN1 MAPRE2 CYC1 UBE2N HSPA8 RPL17 LPPR4 BCAP31 STMN1 SLC24A2 RGS12 CMAS DMTN CORO2B NFE2L1 C1D SKP1 RPL7 INSIG1 DNAJC6 CD63 SNCA STX1B RPS26 MBP TPT1 GPRC5B EDIL3 NDUFA4 NDUFA8 GRIK3 RTN3 NDUFS5 ACOT7 RPL38 TSPYL4 MTCH1 HINT1 PPIH SLC35B1 MAP1B RGS4 JAKMIP1 PTPRM NDUFB1 UHMK1 PRPS1 ITM2A ISCU PPP2CB RPS3A ATP5E SLC24A3 PINK1 GJD2 ANAPC11 MIR6723 ATP6V0B INPP5F NHP2L1 D4S234E RTN1 ENOPH1 TMEM35 KLHL12 HMP19 RAB4A SPTBN1 ATRN ARPC4 MORF4L2 CRYAB CADM2 ALDH1A3 SAP18 BSG BASP1 APP TMEM65 ATP2A2 COX7C PCP4L1 TMA7 NXPH3 ATP1A1 TXN CDH22 NPY AP2M1 PRDX3 OLFM1 NDUFA2 MTRNR2L8 NHP2 MRFAP1 FSCN1 NRIP3 TLE4 PSAP KLHDC3 RPL18A MRPL51 C19ORF10 RPS4X TPI1 SPAG17 SNRPN STMN3 TMOD2 SRP14 NPAS3 TMEM258 BEX5 ZFAND5 COA3 USMG5 STXBP6 VPS35 OAZ1 CA11 PDE1A IRS4 HPS6 ATP6V1G1 MRPS21 AES ATP6V1F GPX4 EEF1A2 RPL41 SLC1A2 CXXC4 RPS6 MPC2 AIMP2 CALM1 UQCR11 HSPA4 COL25A1 CYFIP2 CISD1 NBL1 VSTM2L CNTNAP3 TRHDE B3GNT1 DYNLRB1 RPS15 MIF ESCO2 ATP6V0C BSCL2 RNASEK-C17ORF49 IDS MTRNR2L6 RP11-20I23.1 GTF2H2C_2 PCDHA4 PCDHA9 PCDHA10 PCDHAC1 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B MT-ND4 MT-CYB MT-CO3 MT-ND3 SYT11 SST SYT1 DKK3 ARL8B SLC22A17 CD63 RPL37A MAF RPL41 CPLX2 DRAP1 SCN3B BCAP31 COX7C CPE SPCS2 NEFH ATP1B1 CYP26A1 RTN3 EFR3A CADM2 NGFRAP1 UBE2M ARL6IP5 KCNC2 MT-CO2 ITM2B RPL35 MT-ND2 SYTL2 NR1I3 RPL6 NUAK1 RABAC1 NOS1 TTN CPNE2 AURKAIP1 RPL36A RPS28 ATPAF1 MTRNR2L8 SLC24A2 SKAP2 AK5 GDI1 SRP14 RPL8 TSPAN7 CLU COX4I1 PRNP PREPL KCNA2 TMEM141 PLD3 APLP1 CLTA ENO2 TUBB4B PDP1 YWHAH SRP9 PDCD5 COX7A2 KCNA3 PKM RPS15 TMSB4X CDKN2D NCOA4 GPM6A CDK14 CLTC RPL32 REEP5 LGI3 LYSMD2 PRKAR1A SYT4 BSN MTRNR2L12 DUSP1 RPL18A NRCAM NPTN GRIK1 ATP6V0B CAMKK2 GLRA3 SARAF SUMO2 OXR1 BCL11B YWHAZ TMEM35 IQSEC1 RPS3A SOD1 CRHBP AES VSNL1 MT-ATP6 STMN4 RPL10A DYNLL2 WSB2 CHL1 RCAN2 POMP SEPW1 ATP5H MRPL52 AP3S1 FXYD6 GOT1 SLC39A10 SUB1 WASF1 UBB PITHD1 RAP1GDS1 PAM PGAM1 SPARCL1 VSTM2L COL9A1 SPOCK3 RAB3A PSMC5 NDFIP1 ATP5E YWHAG DNER CDK5R2 NAT8L VAX1 LL0XNC01-16G2.1 TUBA1B KLHL5 RHOA NDUFA8 ATP1A1 FKBP4 SMIM12 PTGES3 ARF3 HMP19 PNMA1 ALDOC ERH SNRPN ARF1 COL21A1 RAB34 NHP2 MORF4L1 RP11-20I23.1 ATP6V0C ALDOA B2M SERF2 AC244489.1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 GPM6A SYT1 ZNF385D DNAJB6 CADM2 VAMP2 RPL21 GDI1 RTN4 CDH13 RPL37A NGRN SYNPR PRKACB CALM1 UCHL1 RPL36A C18ORF32 HNRNPA1P40 TSPYL4 FXYD6 DPYSL2 SLC24A2 RAB4A CNTN1 PIK3R1 SPARCL1 TMSB10 DPP6 INPP5F RPL3 BRK1 WLS KLC1 MORF4L1 TCEB2 MARCKS NOP10 SUMO2 B3GNT1 ATP5I CSDE1 ATP5E SERPINI1 SYT11 HSP90AA1 ATP2A2 PLCB1 UBL5 UQCRH SNCG PTPRM HTRA1 MT-CO1 PPP2CB MT-CO3 AES BEX1 TUBA1B SERINC3 HSP90AB1 RTN3 STXBP6 RP11-111M22.2 EPHA6 GNG3 CLSTN1 TRHDE GRINA FAT3 ENO2 RPL41 RPL13A EFR3A RPL17 OR6D1P NR1I3 SLC22A17 TSPAN7 NEFH PGRMC1 MAPRE2 TMEM164 GNB1 UQCR11 ABHD8 UROS C19ORF53 NMU VSNL1 SLC6A1 MAGED1 PCYT2 TOLLIP PEBP1 SYNGR3 RPS6 SULT4A1 PPP3CA PPP1CB PPP3CB MT-ATP6 SNAP91 C2ORF80 INSIG1 FKBP1A CHN1 PREPL BRICD5 RPL26 SEPW1 OPCML CLTA GHITM TPGS2 OST4 MAL2 PRKCG NFE2L1 SCN3B LZTS1 SLC1A2 UBE2M PJA2 DPY30 APP RPL12 SYN2 PPP2R2B ATP5J2 TMEM258 CTNND2 ALDH5A1 NRIP3 IFI6 GUK1 SLC40A1 TMSB4X TMA7 CDC42SE2 PRDX2 PLS3 PTPRS TMEM65 SLITRK1 YWHAH CDH8 FLOT2 VDAC1 GOT2 PCP4 IGFBP6 PSMD2 EPB41L3 KCNIP1 DCTN1 MRPL20 CPLX1 FTH1 ACTB SEPT4 ACTG1 NXPH1 NDUFB8 ARL6IP1 LAMTOR1 CAP2 TUBB4B CHL1 CPE FRZB RAB40B TMEM35 PRKCB VSTM2L CYFIP2 NRGN SARAF PARM1 DLD SPOCK2 FKBP8 POLR2I YWHAQ ALDOC PTPRT THY1 ATP6V1F ITM2B SKP1 NDUFA5 STMN1 C11ORF31 LANCL1 ATP6V0E2 DKK3 FAM84A PAFAH1B2 CALM3 PNKD ATP1B1 TSC22D1 GPX4 COX4I1 TERF2IP AURKAIP1 YWHAG ARPP19 NECAB1 FIGN CLIP3 BEX4 C14ORF2 PKM ATP6V0D1 SNCB CRIP2 STMN3 KIF1A NDUFS5 TMX4 BSCL2 SLC17A8 MRPS21 RHOA COX7A2L ELAVL4 COX6B1 ATP1A3 ATP2B2 HSPA8 ATP6AP2 FNDC4 COX7B MAPK1 RPS28 PGM2L1 UQCRC1 PNMA2 RRM2B NDUFA4 PSAP PDP1 OXR1 NPAS3 GNG2 SERINC1 DLX6 RPL11 PEA15 PIN1 PGAM1 LL0XNC01-16G2.1 SNN DPY19L1 MT-CO2 COX5B NAP1L5 GABARAPL1 NDUFA1 RPS15 SLC8A2 KIF21A NAP1L2 KIF5A ISCU PAM MTRNR2L12 COX14 MTRNR2L1 SPCS2 EIF4A2 TCEB1 SLC25A11 IQCK RPL10A GABARAPL2 RPL32 TMEM130 CREB3L3 SST HK1 ATP6V0C RP11-219A15.1 RP11-20I23.1 SERF2 RNASEK-C17ORF49 PCDHGA6 PCDHGA5 PCDHGA10 RPL17-C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ATP6 MT-CO2 MTRNR2L12 MT-ND2 MT-ND1 MT-CYB SST MT-ND4 MTRNR2L1 SNAP25 MT-ND3 MTRNR2L8 RAB3B MAP1B SYT1 TBC1D15 MT-ND5 GAD1 SLC9A6 GRIK1 SERINC1 ALCAM SPOCK3 CFH MTATP6P1 KCNC2 EFR3A TRHDE CPE FAM84A APP RTN4 SCAMP5 PTPRN SYT11 SYNPR TMSB4X FLT3 MTRNR2L6 PEBP1 CADM3 GRIN1 PSD3 CBLN4 RAB3IP VSTM2L PJA2 DNAJC6 PLCB1 CHL1 PAM RPL35 TMX4 ATP5E COL6A4P2 CALM2 ATP5O STXBP6 CDK14 SNRPE SPARCL1 SERINC3 SCN3B PKM NPAS3 SOX2 SPOCK1 GAD2 TMEM59L TUBA1A OLFM2 DPYSL2 KIF1A RAB6A ARL6IP5 THY1 MT-ND4L OCIAD1 NRCAM MYL6B NAP1L3 TSPYL4 BIRC5 CKB MGST3 YWHAG ITFG1 KCNAB2 PRKCG CALM3 GPM6A RPL37A RNF11 KLHL5 PRKACB HSP90AA1 ISCU SERPINI1 OXR1 TENM3 CLSTN1 HMP19 OR6D1P TF PTMA INPP5F NAPB FBXL16 TCEA2 ATP5B TPI1 NCAM2 KIF21A PEG10 WLS FTL NCALD DLX1 RPS28 LRFN3 PAFAH1B2 TCEAL2 FAM96B RASGRF2 ARL6IP1 SYN2 ITM2C HSP90AB1 CBX6 ARF1 PIK3R1 RAB40B MIEN1 ARL8B HIST1H1E POMP HDDC2 HINT1 RHEB ATP5G1 RPS3A RILPL2 ATP6AP1 SNRPN SCD5 BASP1 ATP6V1C1 IDS NAPA NUDT21 CREG2 YWHAQ CALM1 CORO1B PCSK1N TOMM20 NIPA1 SUB1 USMG5 SRD5A1 LAMTOR5 ACTB WBP2 ATP1B2 AP2B1 MAP1A PRKCB CYFIP2 SPCS2 IGSF21 TERF2IP KCNA2 RAB3C TIGD4 LINC00116 RP11-111M22.2 SSTR2 BCAT1 FAIM2 HNRNPH2 CADM2 RPL6 CACNA2D2 ZNF343 ACTG1 NSF TMSB10 PRDM1 NDRG4 RGS4 RNF144B VAMP2 SPOCK2 ITM2B PPP2R2C NDUFA5 OAT SEZ6L2 EIF1AX RAB6B CHMP4B PIP5K1B RP11-98D18.7 ARF5 TMEM120A D4S234E ATP2B2 RAP2A CHCHD2 ARX KLHDC3 YWHAB ATP6V0B PDP1 PPP3CA ELAVL2 SKP1 ATOX1 YAF2 KCNIP1 NRIP3 ATP6V1A SARAF PRKAR1A ACLY PCBP1 WASL PTPRM TCEAL5 COX5B CHP1 FGF12 PTPRT B3GALT2 CLIP2 TPPP LGI2 SCN1A NDUFV1 C4ORF3 PCDHB10 SLC32A1 RTN3 FTH1 AP2M1 ENO1 RPL38 KLC1 PREPL KIF5A TUBA1B GRIK3 DNAJC5 PPP2CA STXBP1 RELN RPL13 PPM1A TUBB4A PRKCE ARHGDIA PEX5L ATP1B1 DPP6 TOMM70A BEX1 PPP3R1 PRKAR1B UQCRB TOLLIP ATP5J2 UCHL1 SELT MTPN NREP RCAN2 RPL31 GTF3A ARL1 PPP1CB CDK5R1 PHYHIPL BAI2 BEND4 NPTN DNER RPL10A NDUFC2 COX6C MAP1LC3A REPS2 MRFAP1 PFKP EIF4A2 GRIN3A LMO4 CHN1 TM2D3 C1ORF95 PPP2R1A ZNF365 PTCHD4 GABARAP RPL26 TUBD1 RPL13A RPL21 RPL36A RPL7 RPL17 RPL17-C18ORF32 AC244489.1 CYB5R3 PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 GRIN1 RPL38 MT-CO2 RTN3 ARL6IP5 MT-CO1 FAIM2 TRIM37 ELAVL2 EIF4A2 ROBO2 NEFL VAMP1 VSTM2A GDI1 MT-ND3 GAD1 ARPP19 NPTN MAP1B HMGCR PSD3 ATP2A2 SPCS2 PRKCG MTRNR2L12 RAB6B YWHAG RTDR1 RHOA YWHAQ NPAS3 SLC6A1 CPNE4 SYN1 VDAC3 PRKAR1B CTNND2 RPL35 INSIG1 SGCD JUND CCDC74A VSNL1 DSTN MLLT11 SPOCK3 PKM MTRNR2L8 RBX1 HMP19 MYRIP TMEM65 PREPL ATP2B2 D4S234E PGRMC1 ADD2 PLD3 SERINC1 DRAP1 MT-ND4 VSTM2L RPS27A MAP7D1 RAD23B ATP9A BEX2 SEZ6L2 SLC25A6 SLIT1 PPP2R1A FGF12 BNIP3 STMN4 DPP6 HSP90AB1 CISD1 EDF1 ATP1A1 FAM19A2 HSP90AA1 RAB3B EFHD2 TIMP3 KLHL5 RPL15 C16ORF13 TIMP2 GNG3 KIFAP3 MT-CO3 ATP1B1 FTH1 RPS28 TMTC1 SRP14 NDUFC2 GUCY1B3 UQCRH NXPH3 TUBB4B MYL6B FAM96B SALL2 MMD MAGEH1 PSMB7 F8 C12ORF57 RPL13 GABARAPL1 WLS MT-CYB GAP43 DCN RPS15 CD59 COX5A PRKACB TMX4 PRNP ARF3 PRPS1 SLC10A4 MDH2 MTATP6P1 USP5 GRIN3A SERF2 DYNLRB1 SCD5 FAM84A FABP5 TSPYL1 COX6A1 PITHD1 ITM2B PGAM1 ATP6V0B SLC17A6 SKP1 SCN1A RNF208 UBQLN2 RTN4 CALM2 DCLK1 SST NDRG4 MRFAP1 TRHDE ENO1 COX4I1 ALDOA KIAA1024 ISCU NFE2L1 SULT4A1 PPP3CA SARAF NDRG3 SCAMP5 SOX6 DNER TOLLIP TPT1 HN1 EGFL7 RPL21 ATP6V0C NGRN RP11-20I23.1 TUBD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "SST-expressing interneuron", "role": "assistant" } ]

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