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[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 GLUL PTGDS MT2A ALDH1L1 ZNF385D CLU SPARCL1 RPL12 GFAP MT1X CST3 ANGPTL4 CPE TUBB2B MT-CO3 NRCAM GADD45B MRVI1 ATP1A2 NDRG2 CHI3L1 TBC1D15 MT-CO2 ZBTB20 GPR98 GSTP1 GPR56 SNAP25 METTL7A ACTB RPL37A EDNRB MT-ND2 MYBL1 GPM6A HSD17B14 COL5A3 GRIN2C IFITM3 MT-ND3 HMGCS1 CNTNAP3 MT3 PTPRZ1 HILPDA MT-CYB TSC22D4 TGOLN2 PLSCR1 PPP2R2C EFEMP1 PLIN2 TIMP3 PJA2 SERINC1 RRAGA DPF3 LDB2 SARAF MAP7D1 CBX3P5 MT-ATP6 APOE LCNL1 CAP2 NDFIP1 UBE2E3 PAMR1 SUMO2 CLDND1 PCDH17 CXCL2 UBE2D2 PBXIP1 ITM2C MYO10 FAM189A2 BASP1 TMEM123 FASN MLC1 CCL2 SELM SCD EID1 HIF3A VIP ENO1 WBP2 CORO2B ATP5C1 S100A6 CLTC STON2 WIF1 FKBP1A MT1A RTN4 ROBO3 AEBP1 RIT2 ITPR2 EPHB6 HSPA8 ZFAND5 STXBP1 TMEM258 MAST3 CLSTN1 ACTG1 PPP5D1 VWA1 TPI1 RPL13 BRK1 MRPL51 NDUFA13 CRIM1 TSPAN7 TPT1 NSDHL PREPL PREX2 RAB2A CADM2 SOX9 COX7A1 TMEM141 NTNG2 CHN1 WFS1 IQSEC1 UQCRC2 COX6B1 MT-ND4 FTH1 PAK1 FGFR3 GLIS3 USMG5 PDZD11 DMTN PITHD1 PHB GNAQ RP11-111M22.2 RAMP1 C1ORF95 RPS12 CPNE8 MORF4L2 NDUFA12 ZIC2 RPL39 ID2 PSMC5 ZFP36 BCL6 MTATP6P1 CLIP3 AKAP12 CKB CDC37 ARF5 S100A13 OLIG1 COX6A1 TRIP6 HK1 RPL35 ATP13A4 CYBRD1 GABARAPL2 MYEOV2 PAM APOL6 ASAP2 EIF4A2 SIRPA NDP NGFRAP1 RAB34 NFIA RORB MT-CO1 NDUFB8 FGF2 NPAS3 SKP1 GSTO1 F3 TMEM59L ADAMTS17 MYL6 PFKP FNDC4 MRFAP1 VAMP2 PARP14 FAM84A SLC25A4 B2M C19ORF10 GOLIM4 CD63 MRPL15 SLC39A12 COPE SDC4 SV2B GPR171 PGK1 RP11-219A15.1 IDS GABARAP AC244489.1 PCDHGA6 PCDHGA5 PCDHGA10 DNAJC21 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 ANGPTL4 GAPDH PTGDS SYT1 MT-ND2 ATP1B1 CLU SLC1A2 F3 ALDOA SPARCL1 RPL41 GPCPD1 ITM2C TBC1D15 ALDH1L1 SDC4 GADD45B MT-CO3 EIF4A2 MT-ND4 MT3 PGK1 NEGR1 PRNP PKM ATP5A1 MTRNR2L12 CALM1 LCNL1 PFN2 GPM6A HILPDA CPE RARRES2 VIM SLC1A3 FAM189A2 SLC9A6 NDUFAB1 ATP1A2 GAD1 RPL37A EIF4G2 VEGFA SNAP25 SEZ6L2 MORF4L2 PDGFRB TUBA1A TMSB4X PGAM1 ARFGAP2 TAC1 BST2 MTG1 MPPED1 ATP5J2 RASSF3 STUB1 PNMAL2 TMX4 NDUFB2 RPL36A LANCL1 SLC24A2 PARM1 CRIP2 TMEM144 MT-CO2 REEP5 RAB11FIP5 PIEZO1 SAP18 SLC22A17 DNAJC4 GPRC5B SLC6A17 SYT17 SPOCK3 CACNA2D2 RHEB CLIP3 ZMAT2 SLC25A48 NDFIP1 ATP6V0D1 HK1 GPX4 MAP2K2 STMN1 SOD1 TPGS2 OPCML CIAPIN1 SPCS2 ZFP36L2 SCD5 YBX3 ANAPC13 PREPL RRM2B QKI MFSD6 OLFM1 PRKACB CST3 CHI3L1 GNAQ PSD3 CTC-575D19.1 HEPH SNCG PLOD2 CDC37 EDNRB GNB1 FAM134A ITPR2 COX7B ATP6AP1 ADIRF MTATP6P1 CD63 GUK1 COPS8 CHCHD2 TMEM164 C1S SEC61G BANF1 ZFAND5 LGALS3 TMEM14A PGRMC1 TBCB HDLBP UQCRFS1 TCEA2 RPS5 FTH1 EXTL2 PMP2 RPL31 ATP1B2 GRIN2C MORF4L1 TMA7 RPL26 GSG1L C10ORF54 HSP90AA1 AGT MAP1A JUN NDRG4 EDF1 MAP1B APLP2 LPPR4 PFKP H2AFZ UQCRH RPL38 ATP1A1 TSC22D1 NRCAM PTPRZ1 MT1X GRIN2A C19ORF43 MT-ATP6 WASF1 TMTC1 GPR56 CACNG3 AEBP1 KCNAB2 ZBTB20 CLSTN1 MTCH1 PIN1 RPL35 NGFRAP1 NDUFB11 DNAJB6 COL6A1 ZCCHC17 TPI1 PAQR8 RAB6B ADD2 TAGLN3 RPS2 KCNC2 MT1G DNM3 PPP2R1A SRP14 APLP1 ASAP2 PNMA2 SARAF AP2M1 ATPAF1 UBE2QL1 PCDHB10 RP11-632C17__A.1 AKAP12 SYT11 VSNL1 GRIN1 NAT8L ARF5 FTL USP5 DPYSL2 SNCB ATP2A2 FOS GPR98 ISCU NDUFS5 SSBP3 ANK1 ZNF385D SYTL2 RAB3B RP11-20I23.1 OR6D1P NGRN C11ORF31 RPL13A TUBB3 ATP6V0C AC244489.1 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 GPR98 SLC1A2 PTGDS GLUL ADM VEGFA GAPDH NDRG2 RAB3B SYTL2 CALM2 PPAP2B NFIA MRVI1 FGFR3 MTRNR2L8 CLU PTPRZ1 BSG CAMK2G COL5A3 ATP6V0E2 GPRC5B ATP1B2 NPAS3 SLC6A1 MTRNR2L12 ARFGAP2 ATP5G2 PCDHGA5 UBE2V2 SDK2 UQCRHL MDH2 RORB ADAM33 GPR37L1 ENO2 UQCR10 RAB11A QKI UBC KLHL5 SRP14 PDE1C PFN1 ARHGAP42 PEBP1 NUAK1 ARF3 ITGB4 MT-CYB IL6R MYO10 PI4KA DPYSL2 RHOB BIRC5 SLCO1C1 SCD5 ATP5J AXL RPL31 MEGF10 SGCD NDUFB1 GOLIM4 APOE ARL4C CSDE1 RPS28 AGT FTL WFS1 RPL37A METTL7A PRNP ANGPTL4 MAP1B TSC22D4 SLC17A7 IGFBP7 SPI1 ZBTB20 UROD FBXW11 MAF LCN12 ID2 SPTBN1 ATP11C PPP2R2C SPARCL1 TMEM230 ATOX1 NACC2 MT1E PDLIM5 OLFM2 TIMP2 IGFBP5 HIF3A ATP1A2 CPE UQCRC2 GRINA UBL4A PGK1 RPL3 ALDOA RPL41 OR6D1P TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 ZBTB20 GPR98 MT2A SPARCL1 FTH1 CPE ATP2A2 WIF1 CHN1 SLC14A1 ACTG1 ATP1B2 UQCRC1 ATP11C ATP1A2 HGF PTN SLC9A3R1 F3 SARAF HSPA2 SOX2 BMPR1B COA4 ACACB MT-ND5 GLUL ZFHX4 NFIA HHATL MT-ND4L IGFBP6 PPAP2B MRPL20 CFL1 PSD3 PREX2 ATOX1 CYP2J2 SUCLA2 VDAC1 PAPLN PRDX1 SH3GL2 RHBDF1 ZCCHC24 CADM2 TIMP3 RPS27A CDC14A YWHAB EGFR USMG5 TMEM59L BSG EDNRB RPL35 GRM3 MT1G TSPAN7 TMOD2 MYEOV2 NECAB1 RP11-139K1.2 GPR56 MT1X TBC1D15 DKK3 SPOCK2 CNTN1 MT1F FBXL16 FAM198B RPS5 CLU SLC39A12 GPM6A RPS26 KCNJ10 SLCO1C1 SYT11 ATP13A4 PLCB1 PSAP NPTXR PTGDS MAL ENO1 CAMK4 ELFN1 DPYSL2 MT-CYB ERBB4 MGST1 PTPRZ1 SRD5A1 MRVI1 ATP2B4 VIM SAMM50 TBCA ARHGAP24 GPRC5B FTL NDUFA4 NDUFS6 SLC40A1 TMEM150C MT1E RPL13A GTF2H2C_2 ESCO2 SYTL2 ZNF385D RAB3B PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHI3L1 CLU ANGPTL4 GFAP MT-ATP6 MT2A HILPDA MT-ND3 MT-CYB MT-CO1 ACTG1 MAP1B MT-ND2 SLC1A2 MT-CO3 F3 MTATP6P1 HMGCR MT-ND4 PTPRZ1 APOL6 TUBB2B MTUS1 CST3 ENO2 GLUL PTGDS GAPDH CDC37 KCNJ10 RPL11 SNAP25 PAMR1 DPYSL2 NDUFB1 GPM6A NDRG4 GPR56 TUBB2A DGUOK PLD5 STMN1 RPS4X ZFP36 SLC1A3 EDIL3 PCDHGA6 RHOB MT1E SPARCL1 SERF2 SCD5 ATP6V0E2 OAT COX5B ONECUT1 AP2M1 GPR98 GPR37L1 HSPB1 KLC1 RAB6B MORF4L1 TPD52 DKK3 RPL10A ACTB BGN CRIM1 MLC1 ITFG1 ATP5G2 METTL7A FTL WIPF1 PHYHIP CRISPLD2 AQP4 RAB31 MT-CO2 RAN BAI2 COX4I1 DMTN LDB2 TSPYL4 TSC22D4 HNRNPH2 RPL41 UQCR10 HSPE1 CHL1 TMSB10 MDH2 CDKN1A SLC25A5 ATP5G3 ARL6IP5 PRKAR1A ID2 CALM1 CHN1 BHLHE40 FTH1 S100A16 NDUFB3 SMOC1 PDGFRA ERBB4 ZFHX4 BCL6 C7ORF50 WBP2 SUMO2 IQSEC1 TCEB1 STMN4 UROS NDUFAF3 ARL2BP FAT3 MT1X PREX2 DPP6 SLC7A5 C2ORF80 SLC38A3 COL4A5 NEK6 CAMK4 VDAC1 CYP26B1 SYT11 TOMM20 NGFRAP1 UBE2M SCD COX7A2 ALDH1L1 DIRAS1 NACC2 BTBD1 MAP4 QKI PRKCDBP ARFGAP2 SSTR2 JUNB ARL6IP1 HSP90AA1 HS6ST3 NRGN EDN1 WIF1 SLC17A7 ATP1A1 SELM VSNL1 RNF11 FBXW11 STRAP ATP6V1E1 CNP TMEM147 MAP2K4 ZFAND5 DNER GRIN2C RAB5C DPF3 NPTXR ATP2A2 ALDOC RHOC ACSL5 MPC2 LCNL1 DDR2 SEZ6L2 NDUFB11 C1QBP SYPL1 PSAP CCK CD63 CSDE1 TENM1 VCAN INPP5F CAP2 RASL12 ATP6AP1 NDUFA4 SLC25A22 UHMK1 PGK1 CLTA CPE SLC2A1 VEGFA PLSCR1 PSMD12 NAP1L3 FOS ZFP36L1 COL5A3 SLIT1 RBX1 PTN CYCS COL9A1 ANXA7 FIGN ALCAM CLTC EGR1 TUBA1B TUBA4A APLP2 LGI3 ATP6V1C1 ATP6AP2 CDH7 COPS8 CMAS MANBAL NFE2L1 MARCKS RAB3B ZNF385D SYTL2 TMEM130 IDS NSF B2M RPL7 ATP6V1G2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 CHI3L1 SLC1A3 FTH1 APOE GPM6A ID4 MT-ND4 SPARCL1 F3 ESCO2 ITM2C CLU GJA1 CST3 COX7B HTRA1 PTGDS SERPINE2 TUBA1A NDRG2 TUBB2A MLF2 PSAP CPE POLR2M NRCAM STMN3 HOMER1 PTPRZ1 MT-ND3 ATP1B2 RPL13A METTL7A ARHGAP29 ANGPTL4 RPS28 MTRNR2L1 GADD45B GFAP OCIAD1 TMSB4X TSC22D4 EPHB1 MRAS MRVI1 GADD45GIP1 DYNLL1 BIRC5 SERINC1 RGS16 FIS1 PREX2 MT1M ARX ZNF385A FGF2 TUBD1 IGFBP7 APOL6 MT-CO2 RPL3 NDUFS5 RPL23A RPL32 EFEMP1 JUNB CALM1 EPHX2 FOS FKBP4 TRIB2 ATP1A2 MT-CO1 SARAF C10ORF54 GPR98 MGST3 CDC37 C19ORF70 DNM3 SNCG MT2A ALDOC ACTR10 NDUFB7 NARS SCOC C6ORF1 COX7C C9ORF16 YAP1 PTN TSPAN7 SPOCK2 GAPDH GLUL ARL4C MT-ND4L SSTR2 YIPF1 ATRN RPL13 XAF1 CPNE8 PRDX2 KIF1A NAT8L ETNPPL AQP4 GRM3 MT-CO3 IDS NDUFA11 COL5A3 OAZ1 KLHL5 ITPR2 NDRG4 NEFL DNER LZTS1 IFITM3 C6ORF141 CKB MT3 GPR37L1 ERBB4 CTC-575D19.1 DDAH1 SELM MTG1 PINK1 S100A6 MGST1 VDAC3 CADM2 RPL15 CALM2 CMAS RPL37A MTRNR2L6 EMX2 HSP90AB1 SLC6A1 DPYSL2 PPM1A RPS15 SMS RHBDD2 ZFHX4 DNAJC5 DPY19L1 NDUFB2 RAB1A GFRA2 BASP1 ACTG1 RTN1 CAMK2G MDH1 TIMP2 PPAP2B DNAJC21 TBC1D15 SLC26A10 GABARAP ATP6V0C RPL17-C18ORF32 RP11-20I23.1 RPL17 GTF2H2C_2 PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 MT2A CLU SPARCL1 RAB3B RTN4 SNAP25 PTGDS SCD5 SNAP91 CST3 NRGN BIRC5 MT1X FTH1 TBC1D15 PSMA7 ACTG1 WIF1 CHI3L1 MT-CYB SIGIRR MAP1B CPE DPYSL2 MYEOV2 GFAP SLC9A9 HINT1 IFITM3 GPM6A ANGPTL4 MT-CO1 GJA1 MGST1 PTPRZ1 GAPDH ATP1B2 NDRG2 PSD3 GLUL ITM2C TPT1 CDC37 NAT8L UQCRQ CLPTM1 SLC12A5 SYT11 MLC1 ARPP19 PPAP2B PPP2CB AQP4 MYO1B CCL2 TSPAN7 APP ATP5G3 OLFM1 COX7C EPS15 HMGCR YWHAB WASF1 PRKCB APOE ZBTB20 ITGB4 QKI ARF1 CTNNB1 SMS MTRNR2L8 TIMP3 MRPL55 EXTL2 RPL13 LGALS1 GYG1 GPR98 ATP5G1 S100A1 MT-ND2 WLS CRIM1 SNCG ZFP36L1 TSC22D4 CPLX1 COL6A1 ATP1A2 ID4 PKM HSP90AA1 MTRNR2L12 CTSD ATP5I GADD45B F3 CNTNAP3 MT3 SNX3 FAIM2 CCK MAP4 PPP1CB MORF4L1 EPHX2 TCEAL2 RPL23A KCNJ10 RTN3 PMP2 RSL24D1 APLP2 NDUFA11 SLCO1C1 NCDN DPY19L1 LRP4 EIF1AX SULT4A1 MT-CO3 NDUFB11 BSG C6ORF1 ENO2 PPDPF HSPB1 PFKP CACNB1 DNAJC5 SEPW1 SUMO1 C9ORF16 POMP TBCB NKAIN4 SPCS2 GJB6 SCOC NACC2 DLC1 MAP1LC3A PDCD5 YWHAQ SOX9 ATP6V1B2 COX4I1 PAQR8 HIGD1A NPTN SPTBN1 VAPB GOLIM4 MAP1A TSC22D1 RPL11 AHNAK PTN MT-ND5 ATP5A1 NUDT21 RPL21 IDS TUBB3 NGRN SERPINA3 SYTL2 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT1E SLC1A3 MT-ND4 NACC2 ATP1A2 MT-ND3 MT-ND2 GPR98 GPR37L1 MT-CO3 SLC14A1 MTRNR2L12 CALM1 QKI HIF3A PRNP NAT8L EPS15 CPE PTPRZ1 ZBTB20 ACTB MT2A MT-CO2 LRP4 SYT17 EFR3A STMN3 PDLIM5 UBL5 C6ORF1 GAPDH SCD NFIA SEC61G MT1X SCD5 CDC37 LMBRD2 SPON1 AQP4 COX6A1 F3 COL5A3 INHBB RP11-111M22.2 MRVI1 VEGFA MRPL37 THY1 ATP5E TMOD2 EDIL3 C14ORF2 IFITM3 PPP2R1A MBP MYO10 TMEM144 MT-ATP6 RBX1 FTH1 PCDHGA5 UQCRB EDNRB MT3 GTF2B SLC22A17 GPR56 UQCRFS1 PIFO FKBP4 ACSS1 COPE RPL10A SLC1A2 GNAQ KCNA2 ZFAND5 KIFAP3 JUND AGT PLP1 AKAP12 GPM6A RPL11 OLIG1 MARCKSL1 SERINC1 GJA1 MT-ND1 KCNJ10 SEMA3A GABRG1 FTL VPS35 ARL6IP5 GLIS3 RPL32 NDRG2 UTRN PPAP2B ERBB3 GLUL METTL7A OPALIN AHNAK2 ATP5J2 ITGB4 HTRA1 APOLD1 PTGDS HSPB1 ARL6IP1 SLC9A9 RP11-20I23.1 MIR6723 MT-CO1 ATP6V0C RAB3B SYTL2 ZNF385D PFKP TUBD1 HNRNPA1P40 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 AQP4 S100A1 GJA1 RAB3B NFIA GPR56 FTL CKB ATP1A2 KIF21A GAPDH COX17 SNAP25 ATP1B2 HIF3A ATP13A4 CTNND2 GLUL NAT8L MT1E APOE GPM6A MRPL47 STON2 ARSE TMOD2 SPARCL1 RPL41 SAP18 ACACB PRNP MBP LMO3 MT-CO3 MAST3 EGFR NDUFA2 CLU MT1G METTL7A ENKUR GABARAPL2 PSAP ANGPTL4 MIR3916 NGFRAP1 ATP6V1B2 FAM69C KCNA2 ATP1A1 OXCT1 TIMP3 GPRC5B MTRNR2L12 MT2A CAMK2G MT-CYB PPIH COL5A3 SLC14A1 RTN3 FAM189A2 INHBB MT-ND4 BAALC SPTBN1 KLF10 NDRG2 FOXO1 PRDX1 CPE ARPP19 HILPDA MORF4L1 PON2 CYP27A1 GLIS3 PLCB1 SELT WIF1 FLOT2 ACSS1 VPS35 CNTNAP3 GPR98 GTF2H2C_2 PCDHGA10 PCDHGA5 PCDHGA6 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 CLU PTPRZ1 GJA1 NFIA SLC1A3 MT3 RAB3B FGFR3 RPL21 MT2A PAQR8 HEPN1 AGT MTRNR2L1 APOE FBXW11 ATP1A2 ATP1B2 PLEKHG1 TBC1D15 CD63 GOLIM4 SLC14A1 MEGF10 TSPAN7 RHOB ITM2B RPL26 NDUFA5 CHL1 CADM3 TF TMEM100 ZFHX4 GPR98 CKB FGF12 KCNA2 COL5A3 EFEMP1 RPL37A CAMK2D THBS2 MFGE8 DIO2 SDC4 HHATL KIAA1755 ITM2C VPS35 AHNAK CD99 C11ORF84 RPS27A EIF4A2 EIF4G2 ZBTB20 B3GNT1 RTN3 TUBB2A PFDN1 TENM3 HEPACAM FIS1 SPTBN1 CADM2 SOX2 SARAF RAB6A HK1 EIF1 TRIL GPRC5B RAB31 BNIP3 MT-ND1 FAM69C PLD3 SPARCL1 GFAP ATP6V1A NAT8L GLUL ZFP36L1 RPS2 MT-CO3 CALM1 ATP1A3 KIF21A PDCD5 BMPR1B NKX2-2 CTNND2 PDK4 SERINC1 RHEB SCD RPL38 BCL6 MYL6B TUBB2B MAPK1 MTRNR2L6 HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 SPARCL1 CLU MT3 MT2A NFIA RPL41 ATP1A2 ARHGAP35 ITM2C ZBTB20 PTGDS GPM6A MT1E RAB31 RPL13 AQP4 VDAC3 RPL11 GPR37L1 FTL ESCO2 SLC14A1 PEBP1 MYO10 COX17 MT-ATP6 ATP1B2 ACTL6A GUK1 STAG3L5P GPR143 NOTCH1 PPAP2B ACACB GOT2 ACSS1 ANGPTL4 MRPS21 MT-CO3 DKK3 PCDHA10 SSPN AGT HSP90AA1 UQCRQ TLE4 PIK3R1 VEGFA MGST1 HTRA1 RTN3 FTH1 SPTBN1 RP11-111M22.2 WDR4 SYPL1 DGKG MAGED1 RPS4X NAT8L GLUL SNAP25 COPE MT-CO1 RPL23A JAKMIP1 ATP5H TERF2IP HOMER1 TOPORS-AS1 ARL6IP1 ATP5B SOX2 IGHG3 RPS2 MT-ND4 PLOD2 ACTB COX4I1 DNAJC4 PADI2 GPX4 C14ORF132 CSDE1 INSIG1 PTN S1PR1 WLS GRIN2C TXNIP NAPA GPR98 PDCD5 HSPE1 MTUS1 CYCS ATP2A2 PSAP CYFIP2 MTRNR2L12 GNAQ PAX6 QKI UBC CD59 MLC1 APOE CPE VIM TUBB4A MT-CYB PAK1 METTL7A ATP5A1 TRIB2 TKT SPOCK2 FOXO1 IGHG1 CLTC ITFG1 C1S SLC25A4 CTNND2 JUND RAB3B ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 GPR98 ZBTB20 TBC1D15 SPARCL1 MT-ND4 MT-CO1 ATP1A2 MTRNR2L1 PTGDS COL5A3 RAB3B CKB SERPINE2 WIF1 SNAP25 KIF1A ETNPPL CTNND2 AQP4 PPAP2B GPM6A SLC6A1 CST3 EDNRB SCD5 MT-ND3 FGFR3 PON2 ZMAT2 SLC7A10 BSG PDE9A PTPRZ1 TUBB2B SPCS2 GRAMD3 SARAF MT-ND2 ARF5 PLOD2 MTUS1 HIF3A GAPDH TUBA1B MTRNR2L12 UBE2L6 ID4 CAMK2G PREX2 HEPN1 GLUL MT1G CLU SPOCK1 SDF2L1 MAP4 SPOCK2 C11ORF31 ID2 ATP5H ARL8A MTCH1 CTSD EPS15 KCNJ10 TTPA MT-ATP6 ZCCHC24 PTN APOE GJA1 RORB GPX1 MT-CO2 CHMP5 MT2A OLIG2 CTNNA2 ITM2B SIRPA RAB4A PRNP GLIS3 ALDH5A1 ITGA6 GPR37L1 AES ZBTB18 MAL ANXA4 HNRNPH2 GPRC5B RTN4 TMEM63A XAF1 MDH1 MRVI1 TMX4 SYPL1 PFN2 PFKP ITPR2 AP1S2 ETV1 ATP6V0E2 CFH NDRG2 PEA15 MT-CYB NACC2 DPYSL2 PLTP PAPLN DPY19L1 MRAS ZFAND5 CNTN1 MAP2K1 GJB6 MDGA1 GNG5 SLCO1C1 PGM2L1 IFITM3 YBEY RANBP3L IDI1 CDC42SE2 RNF182 CPE SERINC3 PPP2CB PDLIM5 NFIA EML3 ITGB5 QKI RPL3 IDS GPNMB RELN RPL17-C18ORF32 RPL17 SYTL2 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 FTH1 CLU GPM6A CHI3L1 ANGPTL4 MT3 F3 SPARCL1 SLC25A6 ZFP36L1 C12ORF49 FGFR3 ARL6IP1 TSPYL1 GFAP ZNF385D TUBA1B ZFP36 PTGDS GPX3 YWHAB RAB3B SYTL2 ARFGAP2 QKI UQCRC2 MT-ND4 PTMA GPR98 SLC1A2 GLUL GABRA1 SNX3 PNKP NGFRAP1 ACSS1 SYN1 NSF CAB39 HILPDA MAP1B RPL3 RPS28 TMSB10 PPAP2B UBC APOE ATP1A3 KAL1 GPRC5B PDYN ENO2 GJB6 ATP5B PSMC1 TCEA2 GPCPD1 HS6ST2 SHE SEZ6 RPS15 ALDOC CNP YBX3 GADD45B RPL8 GHITM ANAPC11 SYT11 SYT5 ATP6V1A COX5B UBQLN2 FTL VIM VDAC3 DHCR24 CALM1 ATP9A APP PPIA ARHGAP42 AES VAMP2 AQP4 RTN4 COX7C RPL18A HSPE1 MT-CO3 YWHAG SDC4 NRCAM TMEM258 SH3BGRL3 ACTG1 PTPRN HINT1 ARL6IP5 PTPRS AGT PAQR8 PRNP NDUFS5 CAPZB INPP5F MT1X SOCS3 SLC9A3R1 ZNF365 SPOCK2 RAB6B COX6A1 HSP90AA1 NAT8L XAF1 RPL10A BRK1 ACTB FAM3C CAMKK2 DPYSL2 NOTCH1 TCEB2 RTN3 COMMD6 SNRNP25 SSTR2 NUDT21 CAPZA2 TOMM7 NDRG3 BST2 TMOD2 CDC37 TMEM130 UQCRFS1 CHL1 PLCB1 NDUFAB1 MT2A SARAF PSD3 FASN TLR4 SDS HEPACAM CYCS PSAP PBXIP1 WSB2 UQCRQ CST3 CARTPT RAMP1 PAK1 SKP1 SUMO1 NECAB1 GAPDH ATP13A4 NEK6 GPR171 TUBB2B IFITM1 CCK EFEMP1 CDH13 TUBA4A KLC1 CADM2 EIF1AX C12ORF57 NDUFB4 ALDH1L1 ATHL1 B3GNT1 ATP6V0E2 TBC1D15 TUBB3 NGRN PCDHGA6 PCDHGA10 PCDHGA5 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 PTGDS PCDHGA5 GPR37L1 GLUL CLU MT2A FTH1 CST3 MT1E SYTL2 ZNF385D RAB3B BSG DPYSL2 ACSS1 PSD3 PAQR8 GPR98 MT-CO3 CD58 C14ORF2 GHITM PAX6 CPE STON2 FGFR3 SLC6A1 PTPRZ1 GPM6A KLC1 PPP2R2B SPARCL1 EFR3A GJA1 DGKG NR1I3 PIEZO1 COX7A2L MAP2K4 UTRN HMP19 HSP90AA1 MT1X MT3 PSAP CALM1 CYB5R3 CCK STMND1 RPS3A SPTBN1 ENO1 PEG10 TMEM164 RPL23A TCEA2 TMEM63A ATP5B PDE3A CAMK2G GPR56 MTATP6P1 GRM3 EPS8 RPL21 COL11A1 TCEB2 LPAR6 GFAP NDRG2 UQCRC1 TSPAN12 CTSD DSTN CAPZA2 TSPAN7 CLIP3 GPRC5B ACACB MRAS CACNB1 ZCCHC24 FBLN1 CFL2 HSP90AB1 ATP1B2 SYPL1 PJA2 KIF21A PLTP METTL7A PLCB1 PFKP CYFIP2 MT-ND1 COL5A3 PPDPF CCDC85B DNAJC5 EZR VEGFA LIG1 RORB PPAP2B NIPA1 RPS15 KRAS UQCRC2 ATP6V0E2 PARP14 CADM2 MYBPC1 RASSF8 RTN4 HSPA2 GYG1 PCBP1 MAGED1 RPS28 MEGF10 SLC19A1 TRIM47 LMO3 IDH3A PPM1A PPP3CA CNTN1 SARAF NPTN RAB9A CLSTN1 GLIS3 GAPDH MT-ATP6 MTRNR2L1 YAP1 LCNL1 ZFAND5 PMP2 RPL35 CD99L2 TPD52 PEBP1 APOE C19ORF70 RP11-219A15.1 RNASEK-C17ORF49 MTND2P28 MT-ND2 IDS RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 CLU GPR98 MT-CO3 SPARCL1 AQP4 PTPRZ1 METTL7A MT3 ITPR2 GPM6A COL5A3 PELI2 GJA1 NPTN CST3 PPAP2B ITM2C YAP1 SNAP25 MT-ND3 NDUFA11 EFNB1 MTRNR2L1 QDPR MEGF10 ATP1B2 RAB9A TUBB2B ZFAND4 LIMK1 OSMR QKI GPR56 RAB40B GLUL RAB3B CSRP1 NDUFB2 MAPK1 SPTBN1 ACTR10 RPS28 ATP1A2 PEA15 CPE VCAN SCD5 RORB ROBO3 NDUFB7 SDC4 ARL8A ID2 MT2A MYO10 LMO3 FOXO1 NPAS3 CRIM1 DLD HTRA1 ZBTB20 RAB5C USP5 SIRPA ATP5H PANX1 GFAP CAMK2G SYT11 NDRG2 PPP3CA MT-ATP6 AEBP1 FGFR3 FRMPD2 TMOD2 LGALS1 TTYH2 MT-ND4 ACTB RAB4A PLD3 CKB MAP4 F3 PADI2 AGT RPL41 CXCL14 TIMP3 HEPH FTH1 KCNJ10 LDB2 ACSS1 RPL23A SLC2A1 FTL COX7C ATP6AP2 GRIN2C PIK3R1 RP11-111M22.2 RASSF8 EMX2 RHEB SYTL2 ID4 WIF1 SYT1 TSC22D4 RP11-195F19.5 ALDOC ATP5G2 CHP1 MT-ND1 MTRNR2L6 MTND1P23 RPL36A PCDHAC1 PCDHA10 PCDHA4 PCDHA9 TBC1D15 DNAJC21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 PTGDS ANGPTL4 SLC1A2 CLU HILPDA SOX9 PTN GFAP RAB3B VEGFA APOE PRNP ATP1A2 CST3 CPE MT-CO3 NAT8L GAPDH MT-ND4 PSAP ITM2C AQP4 ZIC1 TKT MT-ND3 TMSB4X MT-ND2 APP ARL6IP5 IDI1 CHI3L1 CALM2 HTRA1 FAM189A2 FTL OLFM2 PLOD2 SDC4 MYO10 CD59 TRIL SNAP25 COL5A3 SPARCL1 ATP1B1 SMAP2 ZBTB20 MAP1LC3A SCN3B WLS MTRNR2L1 SPATA13 PCDHA4 NOTCH1 GRIN2C MT-CO2 NDUFS5 OCIAD1 GABRG1 RAD23B UQCR11 OAZ1 HDAC1 NDFIP2 TMSB10 SLC6A1 GLIS3 DNAJB6 RPS19BP1 DYNLL1 BNIP3 METTL7A FIGN RHOB RPL23A DPYSL2 ETNPPL PTK2B ATP2A2 ATP6AP2 KCNMB4 PGK1 PFKP KCNK1 PDCD5 ENO2 CLTC PAPLN PIEZO1 JUN MYL6B GLUL PAQR8 LAMTOR5 CRYZ WSB2 MGST1 FKBP8 SH3BGRL3 CAP2 THY1 COPRS HPCA PCYT2 SERPINE2 ZCCHC24 HIC1 RPL31 ZNF365 SLCO1C1 CTSD HIF3A ATXN10 F3 C14ORF2 KCNAB2 SCD5 CHN1 MTX3 IDH3A TPI1 C14ORF132 PKM HSPB1 CDCA3 APLP2 MAP4 TOMM20 TRIM37 TEX2 GPR98 PPP2R4 ACOT7 SEPT4 NPTXR ALDOC MT-ND5 BAALC NDRG2 RPL10A KCNJ10 HSPE1 MAOB APLN RHBDD2 HOPX GADD45GIP1 SNN WASF1 RPL3 SYNPO VWA1 RPS2 SOCS3 DGUOK NEUROD2 VDAC1 ETFB ITGB5 PMEPA1 COX6A1 ARL8B CKB MT-CYB PTPRZ1 FTH1 GRM3 MT-CO1 PSMB7 LAGE3 FAM131C BCL6 PTMA S100A13 PMP2 CYP2J2 ACTG1 CCL2 CSDE1 NDUFA2 ARHGAP29 ATP5J2 MRVI1 PARM1 ACSS1 SUMO2 SPON1 GHITM RAN LINC00087 ATP1A3 JAKMIP1 ZFP36L2 FAIM2 CADM2 PRKCB SYT17 AGT NCBP2-AS2 C19ORF43 TERF2IP NEFL RPL11 HSPA8 SLC2A1 TMEM70 NFIA YBX3 GPR158 RPL38 FAM96B SUMO3 ATP6V0B GOT1 EIF4A2 CLDN10 RPS10 MRPL51 DIO2 NAP1L3 S100A16 RHOC FGFR3 CALM1 S100A1 CXCL14 WFS1 SCN1A WBP2 ZNF703 GNB1 SLC7A10 MTRNR2L6 KLC1 CFH PPIA PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANGPTL4 F3 FAM189A2 SLC1A3 SLC1A2 CHI3L1 GADD45B GFAP MT1X VEGFA CLU PTGDS PFKP APOE CDKN1A PLOD2 CALM2 MT-ND3 SELM GLUL MRVI1 SERPINE2 GAPDH BCL6 ARPP19 CYP27A1 BSN HILPDA KIAA1755 GPR56 RPL32 CCL2 HSP90AB1 CPE SIGIRR CDC37 MTRNR2L1 MT3 CD63 ADM NEGR1 SNAP25 CAMK2D APOL6 OLFM2 TGFBI NDUFA13 WFS1 TMEM147 MT-CO3 ITPR2 BST2 FTL MT-CYB ACLY NDRG2 LDHB ZFP36L2 SIRPA AP2M1 TCEA2 PGK1 GPRC5B CLIP3 ZFP36 BNIP3 MLF2 ITGA6 TUBB2B VDAC2 MORF4L2 AQP4 CDK5R1 MT-CO2 RPL13 ZFP36L1 IFI35 UQCR11 ALDOC EZR CALM3 HEY1 LDOC1L ITM2B HSP90AA1 HSPE1 ITFG1 PKM MT1F S100A1 DPF3 RELN RFK RHOB LHX6 SSPN EBF4 POLR2M TTYH2 SERPINA3 UCHL1 CAPZA2 NDUFB4 THY1 PTPRZ1 ZCCHC24 SYT11 ITM2C MT2A CTC-575D19.1 IGFN1 PFN2 YWHAH ATP5E GPM6A MTX3 GNAQ SDC4 PCDHGA6 HEPH XAF1 ATP6V1G1 PCP4 MTPN PCDHGA10 WIF1 ATP1B2 STMN4 GPX1 RRAGA SLC7A2 EIF4A2 TUBA1B PON2 GRIN2C PCBP1 MAP4 DGKG SPARCL1 RNF181 ZCCHC17 LGALS3 RAB40B MAPRE2 MT1M CALM1 MTUS1 MTRNR2L6 BLOC1S1 RP11-20I23.1 ATP6V0C RPL41 SYTL2 DNAJC21 ZNF385D RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 GPR56 PTGDS SYTL2 SERPINE2 KCNJ10 HOMER1 AP2M1 MT2A NCAM2 FGF2 RAB6B METTL7A ATP13A4 CALM2 APOE MT3 TNNT1 GABARAPL2 MT1X OR6D1P MAP2K2 STK24 RPS28 DNAJC4 OCIAD1 PGM2L1 SNAP25 MYBPC1 BIRC5 ARL8B GTF3A RP11-111M22.2 SYT17 PIEZO1 KIF21A PSMB7 CTSD PPAP2B HEPN1 ALDOC PBXIP1 HSP90AA1 TMEM144 TRIM47 GPM6A ACACB MT-CO1 VDAC1 CDC37 CFH CSRP1 ZBTB20 PEBP1 PAX6 ZFP36L1 AIMP2 ZFP36L2 SNRPN PXDC1 RORB ATP1A2 MAPRE2 MTRNR2L12 ALDH1L1 SDC4 ACTB PTPRZ1 GPR98 FGFR3 SPOCK1 SAP18 CALM1 GPR37L1 NDUFB8 CYCS MT-CO2 ID4 BSG FTH1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 GPR98 CPE CLU MT3 PTGDS GPR56 CST3 KCNJ10 SLCO1C1 PBXIP1 SLC7A2 FTL PTPRZ1 NDRG2 AQP4 FTH1 NFIA ARL6IP5 UQCR10 CHI3L1 FGFR3 SPARCL1 PDGFRB DPYSL2 PMP2 MT-ATP6 RANBP3L SAMM50 ACACB MTATP6P1 GRIN2C HGF PLCD1 PRNP TMA7 SDC2 EYA1 ANGPTL4 MT2A CHAC2 MLC1 LINC01085 MAP4 SNRNP25 SERF2 RPL39 ZBTB20 CDS1 PDE1A CHN1 TMEM258 FAT3 NKX2-2 HSPB1 CPNE8 LMO4 THSD7A TLR4 EXTL2 PCDHGA6 PAX6 ALCAM OXCT1 TMEM132C RHEB PHKG1 MAF BMPR1B CORO2B CTSD COX4I1 GUK1 MRPS28 FIGN RPS28 MEGF10 MT1E CRYAB NHP2L1 CNTNAP3 EIF1AX RPL26 MPZL3 CHRDL1 IL6R GJB6 LRRC69 PROCA1 RPL8 ATP1B2 ACTG1 MTRNR2L12 PPAP2B FAM134A LMO3 DPF3 ASAP1 MGST1 TSPAN7 ADAM33 TGOLN2 ITGB5 KAL1 MFN2 TCEB1 S1PR1 KLHL5 SERPINE2 ZFP36L1 ETNPPL PSMD12 MT-ND4 PFKP ATP2B2 FAM19A2 COX5B PLCB1 PALD1 SLC35B1 CYFIP2 UQCRC2 SLC25A48 SYT17 PPP3CB CA8 SLC39A12 SELENBP1 IGFBP7 GPM6A DIO2 GDI1 CKB SPTBN1 PAPLN POLR3H ZFHX4 RPL38 MAPK1 TRIL COL5A3 GHITM MIR6723 RP11-219A15.1 MT-CO1 ZNF385D ESCO2 RAB3B SYTL2 SUCLA2 GTF2H2C_2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 RAB3B MT-CO1 CLU CKB NFIA CALM2 FGFR3 NDRG2 LCN12 PTGDS SCD5 NAT8L MT-ND4 MT2A LCNL1 SLCO1C1 NUDT4 COL5A3 SLC9A9 SPARCL1 LRP4 RPL31 HSPE1 MT1G SNAP25 ETNPPL AURKAIP1 RASSF8 HILPDA ARHGAP35 MAP4 MT-ND1 TLR4 AHNAK PLOD2 OLFM2 ZFAND5 RTN3 TMEM179B NPAS3 MORF4L2 ATP1A2 VEGFA CD24 PPP2R1A ETV5 RP11-111M22.2 RORB GOT1 STON2 PARP9 ZBTB20 HSPB1 HSP90AA1 TUBB2B FAIM2 RAB31 ARPC5L SLC7A2 ANGPTL4 COX7C TPI1 ARL2BP PPP1CB LDB2 RAB6A FGL1 BCAP31 LRFN3 DPF3 ATP2B2 CPE TALDO1 SLC24A2 SLC1A3 PCDH17 TMSB4X OAT MFGE8 RPS6 BMPR1B ATP5E PPP3CA HEPN1 GPR98 ENO2 HEPACAM COX6B1 HHATL FAM189A2 ITM2B ATP13A4 CLDN10 GOLIM4 IDS RPL21 SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 CLU ZBTB20 GPR98 DPYSL2 NDRG2 HOMER1 MT3 GRAMD3 ATP1B2 APOE VAMP2 NFIA TRIB2 PTPRZ1 COL5A3 FTH1 SLC1A3 KIF1A SSPN CFH SYTL2 RAB3B ZNF385D HIF3A COL9A1 MLC1 SOX9 PRNP WLS MRPL55 CEND1 TTYH2 ATP6V0E2 ALDH1A1 SYT11 ACTG1 CAMK2G SDC4 TKT SLCO1C1 SH3BGRL3 GNAQ ATP2B2 TMX4 COX7C TMSB10 CKB VSNL1 UBA52 ID4 RPS28 LINC00116 PON2 GFAP FGFR3 CPE AC011043.1 GPM6A MTRNR2L12 FIGN PAPLN WDR47 ATP6V1G1 NAT8L HSP90AA1 MAP2K4 DKK3 HEPACAM PELI2 MTRNR2L1 LCNL1 MT-CO1 RAP1GDS1 PSAP TUBB2A ITM2C FBXW11 PTGES3 SPARCL1 RPL13 YWHAH ZFP36L1 GNB1 TMOD2 CTBP1 ZFAND5 VWA5A FAM111A COL11A1 MT-ND1 BANF1 MAP4 GOLIM4 EFEMP1 CXCL14 EGFR RAB31 SERPINE2 QKI HMGCR VPS35 NAPB WIF1 PKM MTRNR2L6 IDS GHITM RPL17-C18ORF32 RPL17 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPARCL1 CLU SLC1A3 F3 GFAP GAPDH ANGPTL4 ZNF385D FTH1 MT1X SLC1A2 EIF1 RPL37A TOMM7 CALM1 GPRC5B PRKACB ACTB ZFAND5 AEBP1 AQP4 SOX9 MT2A RPL31 RPS28 GLUL WBP2 FAM189A2 NRGN FAM134A UBC GPR98 DYNLL1 GABARAPL2 RELL1 CPE ADM QKI GADD45B SNAP25 AKAP12 GEM MAPK1 ATP2B2 C4ORF3 TMSB4X RPS3A MT-CO1 SLC6A1 ATP1A2 PTMA GDI1 SLC9A9 PCBP1 TXNDC17 MASP1 S100A13 DCN COMMD6 PRNP ETV5 GPR37L1 VEGFA OSMR BCL6 GABRG1 AP3S1 COX6C ZIC1 PTGDS ACLY MFGE8 UCHL1 HEY1 PLEKHD1 CST3 DRAP1 PLSCR1 MT-ND2 RPL7 MT1M SPATA13 INPP5F PAMR1 CALM2 DHCR24 RPL41 PFKP EPDR1 CCL2 AGT PSAP TMEM117 PPAP2B RPS27A IFITM2 HSPE1 CPNE8 ATP5I FABP7 MT-ND1 RAB34 CD44 CRYAB CADM2 ACSS1 RPL18A MYEOV2 TMSB10 NCOA4 FGFR3 COX7C CD59 HSP90AA1 WWTR1 POMP COPE RPS26 PIP4K2A FNDC4 CSRP1 DPY19L1 ACTG1 COPS7A PTN LGALS3 DCTN3 GLIS3 MSMO1 ZBTB20 LDHB NAT8L STMN1 RAB1A JUN ZIC4 RPL32 GPM6A FTL HILPDA GPR56 SPTBN1 UQCRC1 DLC1 UBA52 SCD5 NFIA MT1G NPTN DPYSL2 NR1I3 PRUNE2 SSTR2 CFH CKLF ARL6IP1 RPL26 RPL13A TBC1D15 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 ZFHX4 PTPRZ1 PLCB1 PCDHGA10 MGST1 AGT ATP13A4 ATP1A2 CHN1 SPARCL1 RANBP3L GPR98 APOE ZFP36L1 CLU WIF1 OR6D1P TBC1D15 RP11-111M22.2 MT1F ZBTB20 QKI PSD3 USP5 RAB3B PRKD2 MBP HINT1 PPP2R2B AQP4 PRKACB SLC39A12 XAF1 NFIA MTRNR2L12 FKBP1A ID2 OXR1 RNF181 MT1G PJA2 CSRP1 COL11A1 HIF3A SLC6A1 MAPK1 NECAB1 MIEN1 HEPACAM SLC35B1 SLC14A1 MT-ND3 CST3 DKK3 ACTR1A MT-ND1 ITFG1 GPRC5B VAMP2 COMMD6 MRVI1 PTGDS CDK17 NKX2-2 TMTC4 IGFBP7 SYTL2 TOMM34 PCDH17 EIF4A2 EDNRB POLR2K GJB6 SH3BGRL2 DPYSL2 ACTB ERBB4 SDC4 MYBPC1 NACC2 VEGFA C11ORF65 NPAS3 LMBRD2 RORB RHEB TSC22D4 TUBB2B TRIB1 NAT8L RPL37A ITPR2 GLUL MTRNR2L8 KLC1 ALDOC MT-CO3 HDDC2 SERPINE2 ATXN10 HN1 MT-ATP6 PPP3CA RAMP1 GPM6A ACSS1 MT3 RLIM UCHL1 PRKAR1A NARS EPS15 GJA1 NDUFB4 RAB3IP TMOD2 PARP14 FGFR3 PPIA RP11-219A15.1 NR1I3 RPL21 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHI3L1 SLC1A3 SNAP25 ANGPTL4 CLU GLUL ZFP36 SYT1 MAP1B MT-CO3 FTL PTGDS PGM2L1 CLTC GFAP WARS MT2A CALM3 F3 VDAC1 MT3 PLSCR1 CST3 UQCRB GHITM EPDR1 PFKP ARPC4 HMGCS1 RTN4 SCN3B OCIAD1 FTH1 PPIA HSP90AB1 COX5B C14ORF2 GJA1 BCL6 APOL6 COX6B1 STUB1 RAB34 RSL24D1 RELN CPE RGS16 BEX2 PCDHGA5 MRVI1 APLP1 PDGFRB ADM GPCPD1 ATP1B1 DNAJC21 TBC1D15 NDRG2 DNM3 SLCO1C1 VSNL1 RPL8 ATP6V0E2 KIF5A PREPL S100A1 ARHGDIA NDUFV1 MT-CYB PCMT1 CHN1 CD63 PRDM16 FAIM2 ITPR2 CALM2 SYT5 RHEB COX4I1 TUBA1A SAMD9L UBC NEUROD2 GUK1 HOMER1 SPP1 ATP6V1B2 PGAM1 ATP5G1 EIF4A2 ALDOC C12ORF57 STMN1 HMP19 LINC00086 UBE2E3 ITM2C C1ORF233 PAQR8 PREX2 C11ORF96 AEBP1 AP1S2 RLIM BAALC ATP2A2 ATP5I MORF4L1 UQCRQ NUDT4 SLC6A1 CKB FAM127A CNP MAPKAPK2 CDH8 FIBP PMEPA1 TM2D3 XAF1 HMGCR CAMK2G ANXA6 RPL13 SNCA SPOCK2 KLHL5 DPYSL2 ARL6IP1 PPP2CB CSDE1 NDUFA12 APP MGST1 CHMP4B SNN FGFR3 TUBB4A CLPTM1 ZBTB18 NAA38 OLFM1 RORB MT1E CLSTN1 GPM6A ATP6AP1 NDFIP1 MYL12B UHMK1 RP11-20I23.1 PEBP1 COL5A3 GRIN2C QKI PGRMC1 TXN HILPDA TSC22D1 CAPZB KIF1A YWHAH PI4KA NAT8L EPS8 TPRG1L MFGE8 BRK1 PNMA2 C1S ALKBH7 KLHDC3 C1QBP BCAS2 EIF1 SLC12A5 PSAP APOE CADM2 EDNRB SV2B NRCAM ELAVL4 DGUOK ATP6V0C RREB1 CAV1 CADM3 TUBB2B OAZ1 ACLY SPARCL1 SYT11 RPL10A BAD ENC1 CAMKK2 NGFRAP1 TGOLN2 EMX2 CHL1 SERPINI1 IDI1 KIFAP3 SNRPN KIAA1755 CCL2 TMEM155 HES1 NECAB1 SERP2 SYNJ1 EFR3A CYCS NRGN LDHB AZIN1 PRKAR1B FASN DYNLL2 FAM131B ATP5B ATP1B2 AP2M1 TMSB4X BHLHE40 OAT ATP5J2 DCLK1 PTMA PEX5L STMN2 COPE PTPRZ1 COPS7A MPI MLF2 NNAT USMG5 TSPAN7 ACTB RAB3B SYTL2 ALDOA MIF RPL36A HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 F3 SLC1A2 CLU FTH1 RPS15 MT2A GFAP GLUL PTGDS HILPDA ACTB NFIA MSMO1 ENO2 ATP13A4 HDDC2 RAB3B MT1E YBX3 SLC6A1 WFS1 CYCS AQP4 VIM QKI ZBTB20 CKB MT-ND4 GPRC5B TOPORS-AS1 PDP1 CPE RPL37A GPR98 USMG5 TSC22D1 ITPR2 TMA7 APOE VEGFA FTL DGUOK CNIH3 NDUFB2 CST3 BEX2 PEA15 TMEM132C GPR56 ATP6V1F C14ORF2 GNG5 TMSB4X GUK1 ZFHX4 SYT11 RPL38 PRNP ALDH5A1 RAMP1 CLIP3 RELL1 ATP5I ZBTB39 LAP3 FGFR3 PREPL FGF2 SEPT1 ANGPTL4 CD9 MT-CO3 MYEOV2 PRDX1 MAL TOLLIP GOLIM4 ATP1B1 NUAK1 ATPAF1 ZNF423 ENO1 S100A13 IFI35 BEX1 ZFP36L1 ATP1A2 PPP2R1A DPY19L1 RHOB MAGED1 PDCD5 DSTN MGST1 NDN UQCRC2 PRDX5 WBP2 GPM6A TUBB2B SLCO1C1 ZIC4 RPL32 RTN3 FAIM2 SOD1 GRIN2C PTPRZ1 SIRPA COPE LGALS1 HTRA1 CLIC4 EDF1 SCD5 ARF5 C16ORF13 RAB34 PKM S1PR1 FABP7 RPS28 OLFM2 GAPDH PRKCG ZCCHC24 PEG10 FBXL16 MRFAP1 ALDH1L1 ADAMTS1 CSRP1 EIF4G2 RAN SPATA13 SMAD6 COX7A2 TENM3 WBSCR17 LAGE3 UQCR11 ZFAND5 FRMD4B MRPS7 ETS1 YWHAG KIF3C ATP6V1G1 ATP1B2 WIF1 ATP2B2 PLEKHF1 AEBP1 GJA1 MT1M RPL41 ATP6V1B2 TMEM258 S100A16 SOX6 COX7C ITGA6 OST4 PLSCR1 MRPL33 PAX6 SNAP25 DPF3 EIF4A2 ACTG1 JUN ITM2C GPR37 NEFL C1ORF52 FAM69C PFDN4 SPARCL1 RPL11 MT1X FARSA ALDOA RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANGPTL4 SLC1A2 VEGFA MT3 PTGDS RAB3B GFAP F3 FTH1 ATP1B2 MT-ND2 CTU2 SLC1A3 HILPDA GJA1 PSAP CLU MT2A ARHGAP29 AGT VAMP2 GLUL HIF3A CTNND2 COX6C MT-CO1 ITM2C TMEM147 KIF21A GPM6A ZFP36 YWHAQ APP SIRPA SNX10 YBX3 ATP1A2 ATP5I CD63 SOX2 SPARCL1 ANAPC13 RPS15 ETFB UQCRH MTRNR2L12 WLS NFE2L1 CDC37 NCEH1 IFITM3 TEX2 FTL GPR98 MT-CO2 SLC25A48 PFKP TMOD2 RHOB PRDX2 NUDT21 RNF181 SNAP91 NAT8L ENO2 CPLX1 TMEM155 ATP6AP2 TMEM123 MT-CYB GABARAPL2 BMPR1B ENSA TMEM120A SERINC1 SDC4 PIEZO1 RTN3 SCD RPL41 SCD5 GNG2 SLC22A17 GABARAPL1 TMEM179B MT1X CHL1 NACC2 NCBP2-AS2 RPL23A ATP2B2 COA4 NEGR1 COX8A NRSN2 ENO1 LAP3 PGM2L1 UQCR10 EIF4A2 PNKD WBP2 COX4I1 CPE NFIA OSMR ID2 PSD3 ACLY AQP4 TMSB10 OST4 CYB5R3 NDUFA11 STOM SNCG GABRA5 PPP1CB CRIM1 TMEM144 SNAPC5 RPL15 MT-ND3 ARHGAP24 GPR37L1 C14ORF132 PBXIP1 CTSD PRKACB FXYD6 CLSTN1 AHNAK S100B LMBRD2 ARF1 PFDN4 QKI PTMA GAPDH PXDC1 SKP1 MT1E CA2 CKB SERPINA3 GABARAP ELMO1 HNRNPA1P40 RELN SNAP25 PCDHAC1 PCDHA10 PCDHA4 PCDHA9 SYTL2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANGPTL4 SLC1A2 MT3 TBC1D15 GLUL QKI MT2A CLU CST3 CHI3L1 SYT1 F3 CCK MAP1B FTH1 ACACB GFAP MRVI1 ITM2C ZBTB20 APOE EDNRB GJA1 GRIN2C PTPRZ1 DPF3 DKK3 PSD3 SLC1A3 ATP1A2 ATP1B2 CKB ITGB4 PTGDS HEPACAM NR1I3 OLFM1 UQCRQ FAM127A PREPL ATP5J RREB1 CADM2 GRAMD3 NDFIP1 FKBP1A PKM AP2M1 GPR37L1 RPL37A IL6R MT-ND3 EIF5A2 RPL32 RAB34 RARRES2 PSMB5 MSMO1 PIN1 BSG HK1 VEGFA C10ORF54 CPE SPARCL1 SLC24A2 PSAP ISCU SNAP91 TMSB4X PEA15 NHP2L1 FAM69C EXTL2 SIRPA EML3 CCL2 AQP4 SLC22A17 HSPA8 METTL7A MAP1A PPP3CA YWHAZ SERPINE2 RHOB HES1 DDR2 KIFAP3 SCAND1 CSDE1 SEPT4 NDUFB1 MT-CYB ACSS1 ATP5J2 TSC22D4 C6ORF1 THBS4 SLC38A3 PPIA GAPDH SLC6A1 UQCR10 OPA1 SDC2 BHLHE40 ALDH1L1 TUBA1A DPYSL2 SCD RPS12 GPR98 PAPLN GOLIM4 ZFAND5 SLC7A10 ACTR10 MBP ENO2 FTL COL5A3 SKP1 OSMR CALM2 RAB4A RNF181 TSC22D1 S1PR1 MAOB UBL5 USP5 SDC4 DGUOK RAB31 SERINC1 GPM6A CXCL14 MYL6B MIF HNRNPA1P40 PLEKHD1 RPL17 UQCR11 RPL17-C18ORF32 IDS RPL13A PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 MT-ND4 SLC1A3 MYO10 FTH1 MT-ATP6 NFIA GNAQ ZBTB20 TRIL GJA1 SYTL2 SAMD11 GLUL CALM2 ATP1A2 QKI MT1E RAB3B MT-ND3 KLHL12 RPS4X CHN1 SDC4 MT2A PAPLN MTRNR2L1 MT-ND2 SPON1 TLR4 BMPR1B RRM2B ETV1 CERS6 THY1 ATP1B2 NEK6 AKAP12 RAB11A FGFR3 ASAP2 CHRDL1 COX7C STOM PSAP MT-CYB VEGFA ARL4C PLD3 CEND1 SLC14A1 TERF2IP MAP1B NCEH1 YWHAB ETNPPL PPP1CB LRP4 MT-CO2 ARPC5L ATP6V0E2 MTATP6P1 RPL38 PCMT1 MT1G NPAS3 HSPA8 ATP13A4 TMEM150C CKB SLC6A12 ENO1 RP11-631M6.3 DPY19L1 DYNLL2 RELN WLS RP11-111M22.2 GJB6 NDRG2 SLC39A12 NUDT21 FJX1 NFE2L1 JUN WASL APOE NDUFB4 UBA52 HEPACAM RPS15 ATP5I INSIG1 INHBB RNF182 TMOD2 ARHGAP24 CRIM1 OCIAD1 CLU MT-CO3 BHLHE40 TOX CALM1 MTX3 IGFBP7 EIF1 MORF4L2 MT1F EPS15 TSPAN7 PAX6 ATP5J2 FAT1 AP3S1 MT3 HGF RRAGA MTRNR2L12 HMGCR TBC1D15 ATP1A3 RPL41 MTRNR2L6 GTF2H2C_2 ETFB PCDHGA10 PCDHGA6 PCDHGA5 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 NFIA CLU CPE SLC1A3 RAB3B MTRNR2L1 SPARCL1 ATP1B2 GLUL APOE GPR98 CHN1 NAT8L RANBP3L ITM2B PTGDS CFH SARAF COL5A3 GJA1 MT-CO2 ARHGAP29 ATP13A4 RPS27A UROD ANGPTL4 ATP5G2 FGF2 EZR GPM6A EFEMP1 ITM2C MLC1 FTL SNAP25 ITGB5 TNNT1 ATP6AP2 ZFP36L2 AGT TCN2 ADAM33 MT-ND5 MYO10 EPHB1 RARRES2 EDNRB DLC1 FGFR3 SLC25A6 MAP1A DNM3 CKB TPT1 AQP4 NACC2 CHMP4B GAPDH ACSS1 MGST3 RP11-111M22.2 ACTL6A GRIN1 RTN4 UROS YAF2 NRCAM PTN FAM198B MEGF10 HSP90AA1 STON2 MT2A TSC22D4 NCAM2 GOLIM4 MT-CO3 GDI1 F3 CADM2 HSPA2 QKI USMG5 LDHB SDC4 ZFHX4 SLC6A1 ATP5A1 WIF1 PRDX1 SPON1 ZFAND5 PRKAR1A SHARPIN NDRG2 ITGA6 ALDH1L1 SLC22A17 MTRNR2L6 TBC1D15 ZNF385D SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 NDRG2 GLUL GPR98 CLU CST3 SERPINE2 NAT8L TBC1D15 ATP1B2 MT3 ZBTB20 ATP1A1 QKI TPT1 NFIA COL5A3 INHBB ITPR2 AQP4 SLC6A1 CPE PDK4 ACACB VEGFA RORB DNM3 RPS28 DNAJC6 TERF2IP PLCB1 ATP6V0E2 PLD3 MT-CO3 PET100 RTN3 ARF1 ENC1 OAZ1 MT1F CD59 SPRTN DSTN PDGFRB SPON1 RAMP1 ATP6V1A LAMTOR1 METTL7A TOMM20 FAT1 IGFBP7 SYT11 BAALC RPL8 MT-CO2 HK1 NAPB UBE2M ACTB RPL23A TGOLN2 KIF1A SOX9 NPAS3 LMBR1 SPARCL1 SLC25A6 BLOC1S1 C16ORF13 MT-ND2 VAMP2 MAPK1 SOX6 MT1X TXNIP ACSS1 ATP1A2 ITM2B MTRNR2L1 SLC7A10 FTH1 F3 HMGB1P35 RPS27A RPL39 RHOJ PSD3 PTPRZ1 GPR56 CALM1 TRIL CDS1 WLS CHADL PTGDS CALM2 EGFR NPTN SYTL2 FAM149B1 ZIC1 RTKN TALDO1 PPP1CB RAB3B IDS MTRNR2L6 RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 GLUL SPARCL1 SLC1A2 CLU F3 GPR98 GPRC5B AQP4 APOE FAM189A2 CHI3L1 VEGFA GPM6A ATP1B2 LGALS3 PTGDS HSPB1 RP11-111M22.2 MRVI1 INA HHATL SERPINE2 GPR56 SLC7A10 MT-ND4 ATP2A2 HILPDA CST3 MT-ND3 BMPR1B KIAA1755 S1PR1 SYPL1 NDUFS5 FASN NDRG4 CLSTN1 CXCL14 GADD45B MT1X HSP90AA1 NPAS3 CALM2 GFAP DPYSL2 PON2 LRRIQ1 REEP5 TBCB TUBB2B HOPX SNAP25 SMS SOCS3 PMP2 MDGA1 CTC-575D19.1 WFS1 ZFP36 EFR3A MAP1B EIF4A2 TRMT112 IFITM3 PTPRM PNKD RPS27A PPP2CA RTN4 FAM96B ARL6IP5 GPR37L1 MT-ND2 SNRPN ALDH1L1 CLDN10 MT-ATP6 AP2B1 HEPACAM RASSF8 IDI1 MEGF10 ZBTB20 MGST1 ACTG1 ATP1A3 RORB ATP1A2 JUND COL5A3 RHOJ TRIM47 CD44 NFE2L1 ASAP2 ARHGDIA ATP5J2 FARSA TERF2IP PTPRS NDP PREX2 OAZ1 MTCH1 PPP3CB AP3S1 ATXN10 TMEM120A VSNL1 PIK3R1 RPL15 ID4 ANGPTL4 RPL38 SKP1 OXR1 FAM149A ALDOC ATP5O BCL6 NAPB NCKAP5 OR6D1P TMSB10 CD59 TUBA1A ITGB4 SHC4 DYNLL1 SLC6A1 GRIN2C TUBA1B TOMM7 RHOB MAP1LC3A SYT17 UBC HOMER1 RPS3A RNF208 TUBB4B BNIP3 HDAC1 PTN RPL13A TUBB2A COX7C TMEM59L ARHGAP29 CSRP1 PPM1A SLC9A3R1 ADAMTS17 LRRC59 METTL7A TMSB4X HIGD1A AEBP1 NDFIP1 SLC35B1 SPTBN1 MLC1 SOD1 HEPH CYFIP2 PARP9 RTN3 CKB TUBA1C CPLX1 CAB39 NDUFC2 SCD5 FSTL5 SLIT1 CD9 ITM2C FGFR3 VAMP2 FTH1 GLIS3 ATP5H MORF4L2 HPCA C12ORF49 BSG ADORA1 SUMO2 MED31 MT2A UHMK1 MFGE8 MT1M CALM1 GJA1 INPP5F BCKDK CPE PRNP MLLT11 RPS28 BEX1 S100B GADD45GIP1 USMG5 MBP KCNA2 FTL QKI AIF1L FNDC4 FABP5 PLEKHG1 ATP5G3 SYTL2 RAB3B EPHB6 HBA1 ATP6V0C RPL6 RPL41 HBA2 B2M RP11-20I23.1 SERPINA3 ARF5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 CST3 SYTL2 ZBTB20 FTH1 APOE NFIA F3 TBC1D15 CLU ANGPTL4 ATP1B2 MT2A GPR56 GOLIM4 QKI FTL HTRA1 PTN PTGDS SPARCL1 AQP4 GJA1 MTRNR2L1 GPR98 SLCO1C1 NDRG2 RORB NPAS3 LYN TSPAN7 LCNL1 NQO1 PPAP2B FGFR3 ITPR2 ZFHX4 AP3S1 HEPACAM ATP1A2 PAX6 CPE NTNG2 B3GNT1 PON2 FASN CKB MT3 VAMP2 KCNJ10 PREX2 MT1E FAM189A2 TMEM132C ZFP36L1 CLDN11 ALDOC CSDE1 MYO10 NR1I3 AGT NXPH1 MORF4L1 TSC22D4 PAPLN SUB1 MLC1 MYBPC1 DNAJB6 DLC1 UQCRC1 PTPRS CLSTN1 FAM198B GLUL CNTN1 RANBP3L MAP4 CTSD DPY19L1 PADI2 CLMN CRIM1 ITM2B RPS27A WASF1 GRAMD3 TLE4 SLC6A1 PDK4 TIMP3 MGST3 PAQR8 ARL1 PSMD12 STON2 YWHAH EDNRB RHOJ TMEM164 C9ORF24 MTCH1 PGK1 RPL39 GABRA1 GDE1 MT-ATP6 TSPYL1 RAB2A IFITM2 AES GAPDH PHYHIPL RELN ALDH1L1 GSTP1 PPP3CA SNAP25 COPE CNTNAP3 SLC24A3 HS3ST3A1 LRP4 HES1 MT-ND1 INHBB WIF1 MFGE8 AP1S2 RPS4X SERPINE2 GTF2H2C_2 TMEM63A NRCAM ETNPPL HGF HIF3A PRELID1 ATP5J2 MT-CO1 MT1F ZFAND5 ITM2C RPL23A CLTC RTN4 KIF21A PIK3R1 NDUFB1 CAMK2G BAALC PLOD2 SDC2 GSG1L SDC4 TMEM120A OAT TDRD7 TRIM47 SLC38A1 PLEKHG3 TMOD2 ATP5F1 TKT EXTL2 COL4A5 NDFIP1 BIRC5 RPS3A S100B KLC1 ID4 PRNP RARRES2 DACH1 CALM1 VEGFA EZR CSRP1 TTYH2 ETFB ACTG1 ITGB4 SOX9 BCL6 MTRNR2L6 PLEKHG1 ACSS1 RP11-20I23.1 CFH ATP6V0C IDS TUBB RPL21 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 CLU ZBTB20 ID2 PTGDS GPR98 COL5A3 CAMK2G NDRG2 SYT11 RNF144B HPSE2 AQP4 EID1 SLC39A10 CPE KLC1 CALM1 ATP1A2 DNAJC21 TBC1D15 SYTL2 RAB3B TMSB10 HTRA1 LMO3 RPL35 PMP2 COL6A1 ERBB4 MAST3 ROBO3 ZFAND5 MT1G ATP1B1 SCN1B ADAMTS9 FGFR3 RHOJ MYO10 PSAP UBE2V2 ITM2C PLCB1 NDFIP1 NAPB AGT PTN FTL GAPDH NDRG4 ALCAM TMOD2 RPS27A RHOB PREX2 UQCRB ATP5O PPAP2B SUMO2 FREM2 RPL15 CCDC115 ARL6IP1 SYN2 CKB MT-ATP6 SLC2A1 HEPH PAPLN SYT1 MT1M NFIA SERPINE2 SLC35B1 GPR37L1 SLC6A1 TRIB2 MDH1 MRVI1 WIF1 RTN1 CBX6 GRAMD3 CADM2 ZFHX4 VPS35 APOE NRF1 SYPL1 DYNLL1 KIF21A OLFM2 SLC14A1 AKAP12 COX7B MT-CO3 TUBA1A SPARCL1 ALDOC ADAM23 ID4 S1PR1 OXR1 TSPAN7 ATP1B2 MT-ND1 MTND1P23 GHITM\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU SLC1A3 PTGDS HILPDA ANGPTL4 MT1X SLC1A2 GPR56 GFAP STOX1 ITM2C PTN PLSCR1 FAIM2 CD9 CST3 GADD45B MT-ND2 HMGCR SSTR2 RPL32 ECEL1 COPE FGFR3 PGK1 ATP5J2 ATP1B2 MGST1 ARL8B SERPINE2 SPARCL1 RGS16 RAB3B SYTL2 OR6D1P RAB6B EPS15 TSPAN7 DLC1 FNDC4 STK24 MRFAP1 LGALS3 ATP1A3 TANC1 GSK3A RPL35 EPAS1 STMND1 FAM189A2 TUBB2B CHI3L1 SUMO2 UQCR10 NDUFA4 GLUL ITPR2 C14ORF132 IFITM2 CAMK2G GJA1 NDUFB8 ELAVL2 GJB6 S100B CTSD PHYHIPL MT1E SOX2 MARCKSL1 DNAJC5 MTPN ARHGDIA TALDO1 MRPS28 GADD45GIP1 AC011043.1 RPL37A NFIA PSMB7 HDLBP METTL7A RPL8 TIMP3 DDR2 MT1M COQ10B TUBB4A IDH3A VEGFA RANBP3L PNMAL1 STUB1 PPP2R1A RABAC1 RTN1 PPIA RPL39 BSG PFKFB4 C2ORF80 RPL3 KAL1 SPON1 INSIG1 FAM131C ATP6AP2 UBB SYT11 CHGB PFN2 BIRC5 ATP6V1A ALDH1L1 SPRYD3 NHP2L1 HNRNPA1P40 MAL SIRPA BHLHE40 CYCS IFITM3 INPP5F NCKAP5 GRM3 NDUFA12 SELM SCN3B SLC24A2 APLP2 C14ORF2 SDS ZBTB20 NDRG4 XAF1 NDUFB11 MRVI1 CLDND1 ATP6V0B NRGN ATG101 HOPX CTBP1 SOCS3 BSCL2 PLEKHD1 GABARAP SERPINA3 PCDHA9 PCDHA4 PCDHA10 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 MT1X SLC1A3 LCN12 HILPDA CADM2 QKI CPE SEMA3B C1S MT-ND2 OAZ1 PFKP MT3 TMSB10 SPARCL1 SPTBN1 GPRC5B SOCS3 ANGPTL4 LCNL1 SLCO1C1 ZNF385D RAB3B SYTL2 METTL7A ZMAT2 MTRNR2L1 GAPDH MORF4L2 PPP2R4 RPS12 ZFAND5 FGFR3 LINGO1 ACSS1 COX5B HOPX CST3 KIF5A RPL3 UQCRB HMGCS1 PADI2 CLPTM1 MRVI1 ZBTB18 GUK1 RGS4 GPR56 PHKG1 RPL26 GRAMD3 BHLHE40 PTGDS COPE RTN4 KLHDC3 PTPRZ1 ENO2 HSD17B6 PRKCE CDC37 CLU NDUFS6 BSG PREX2 DKK3 HEPH TRIP6 RPS27A RHOB MT-ND4 ALDOC MT-ND3 C12ORF49 PPP3CA WDR47 USMG5 APP ATP5A1 NACC2 TUBB3 AHNAK ARF1 NDUFA4 SLC35B1 SUCLA2 HGF INPP5F IFI35 MAST3 AQP4 LGALS3 EGFR EDNRB GPX4 PTN EIF4A2 GJA1 TMEM258 NDUFB5 HEY1 NARS CHST11 GRIN2A TSPAN7 ITM2B FTH1 VWA1 ATP1B2 WIF1 COX4I1 SAMM50 COL5A3 ZFP36L1 LDHB RPL10A GRINA ATP5J2 CDK17 ATP2B2 CAMK2D TMSB4X MRPL47 WLS SLC25A4 NDUFA13 TBC1D15 DNAJC21 SERPINA3 MTRNR2L6 RPL36A RP11-219A15.1 GTF2H2C_2 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 FTL SLC1A3 PTGDS ATP1A2 GLUL KIF21A NDRG2 SPARCL1 GPR98 CIAPIN1 MT3 WIF1 ATP1B2 PRKAR1A CPE PRNP RTN4 TUBB2B ATP10A APOE PLTP GPM6A SNAP25 CHRDL1 PSD3 CLU SCD5 CFH CNP MOXD1 UBA1 MT-CYB NOTCH1 NCKAP5 PIK3R1 MT2A NRCAM DRAP1 AGT JUNB CLTA PGD ADM CD99L2 PLEKHG3 MTCH1 FGFR3 PON2 WBP2 AQP4 RPL39 ARX ACACB USMG5 NAA38 EZR HHATL CSRP1 HS6ST3 S100A1 LYN PSAP MTRNR2L12 SOX9 METTL7A PADI2 ATP6V1A SYT11 CNIH3 ZBTB18 ACTG1 ITPR2 RP11-111M22.2 C10ORF54 PI4KA SOX6 GJA1 ZBTB20 RHOJ FTH1 CAMK2G CST3 RAB6B IQSEC1 EIF4A2 MAF TRIL RPL13 GRIN2C SERPINE2 ALCAM CLDN10 HSP90AA1 APLN RNGTTP1 PTK2B HIF3A TPI1 SPRYD3 ZFP36L2 GPR56 STUB1 PGAM1 ISCA1 TMOD2 MLC1 ANGPTL4 IDS CHGB TBC1D15 DNAJC21 PLEKHD1 NR1I3 HNRNPA1P40 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 CHI3L1 MT2A MT1X F3 GFAP CLU MT-CO3 ANGPTL4 FTH1 MT-ND4 APOE PTGDS SPARCL1 VEGFA ZFP36 GPM6A SERPINE2 ATP1A2 ZFP36L1 HILPDA CST3 IDS FTL MTRNR2L1 TSC22D4 GJA1 BMPR1B UBC GADD45B COX6B1 KCNJ10 PRDX2 CDKN1A RHOB FGFR3 SCAMP5 TUBB2B SST MT-CO2 MBP SIGIRR CTSD DPYSL2 AQP4 ZBTB45 LMO4 NPAS3 TUBB2A CPE MT-ND2 ITM2C UBA52 RELN SYTL2 RAB3B ZNF385D RPS28 RPL13 CLSTN1 ID2 HMGCR TENM1 C6ORF1 POLR2L BST2 MORF4L1 ADM TSPAN7 NAP1L5 SELT RAB11A TSC22D1 COL6A1 CD59 MT-ATP6 ATP6V0B GRAMD3 ZFAND5 RTN1 GRIN2C ALDOC RAMP1 PTMA TERF2IP CLTC RPS5 SLC30A3 NDFIP1 NAPB CD63 GUK1 MT-CYB HSPA8 PLD3 MRPL20 CXCL14 GNG2 PTN MT-ND3 RRAGA DNER TUBA1A CCL2 IGFBP7 AURKAIP1 SLCO1C1 JUND ZFP36L2 ACSS1 BEX2 MGST1 VWA1 COX7C EIF4G2 USMG5 SLC40A1 MSMO1 SNRPN NKAIN4 RPL37A SKP1 NRGN LDHB ATP1B1 ATP6V1G1 SCN1B NDUFS6 IL33 LSM4 PSD3 PGAM1 FAM219A TRIL MTRNR2L6 AEBP1 RPL15 ATP5A1 CD58 CD44 GPR56 SOX9 JUN PFKP ITFG1 PPP2R4 PGRMC1 TUBA1B VSNL1 CSDE1 RPL3 TMEM164 HSPB8 NARS AXL FAM96B MAP1LC3B TMSB4X LMBRD2 RNF11 PEBP1 MT-ND1 YWHAZ MORF4L2 PHPT1 RTN3 SDS QKI GPRC5B NRCAM MAPK1 RPL39 PPAP2B HEPACAM ITM2B PPP3CA MTATP6P1 EML3 VAMP2 SOCS3 KIF21A STMN2 MTRNR2L12 CLIP3 RTN4 SLC39A12 ATP5I FKBP8 GPCPD1 GPR37 PTPRZ1 STXBP1 ACTG1 SPTBN1 GAPDH PBXIP1 RPS27A PLCB1 CNTN1 COX4I1 SGCD PIK3R1 OXR1 DDN CCK HSD17B6 ACTB ZBTB20 ATP2B4 OPA1 ALDH5A1 SLC38A1 ATP1A1 GNAQ UQCRC2 TRIM47 CHL1 MCM5 TF RPL17-C18ORF32 RP11-20I23.1 ATP6V0C RPL17 RPL41 RP11-111M22.2 PLEKHD1 HNRNPA1P40 RP11-219A15.1 TBC1D15 DNAJC21 ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: F3 SLC1A2 CHI3L1 SLC1A3 GLUL ANGPTL4 PTPRZ1 ARFGAP2 CLU GPR98 SERPINE2 VWA1 SPARCL1 MT3 MYEOV2 NFIA PBXIP1 IGFBP7 IFITM3 PREPL PTGDS FTH1 AXL C19ORF53 TSC22D4 PSD3 NKAIN4 UBC TSC22D1 MLC1 ITGB5 GAPDH ATP6V0E2 PCYT2 NPAS3 MAP1LC3A SDC4 TUBB2B H2AFZ NRSN2 SYT11 EIF4G2 PCMT1 TSPAN7 ABCA8 CHL1 EIF1 WIF1 PLIN3 USMG5 TMA7 PTN ATP1A2 ATP5I CTNNA2 MAPRE2 DYNLRB1 RAB3A SELENBP1 CASP7 ATP6V1B2 RPS4X GPR37L1 MTCH1 AGA ZBTB20 HCN1 DSTN ATP5E CYCS CTSD APOE GNB1 CHN1 TMEM151A TRIM47 RPL32 HOPX HFM1 GJA1 TUBB4B CCK PMP2 TIMP2 FBXW11 ACTB MT-CYB NAPB SLC25A11 PRKCB NCDN HILPDA TCEAL2 HSP90AB1 UQCR11 AP2B1 RPS19BP1 PGK1 ATP1B2 FXYD6 RELN HTRA1 TSPYL4 BAI2 KIF21A HES1 PRDM16 STMN1 ADM AGT MT-ND4 HEPACAM SMAP2 TKT RHEB ALCAM PDE3A AKAP12 CPE CST3 NRCAM GJB6 PCDHA10 B2M CCL2 RAB40B TMEM144 COX4I1 NIPA1 ALDH1L1 PSMA7 RPL11 ASAP2 MTRNR2L12 SNAP25 PJA2 CYC1 UBB CHRDL1 NPTXR GOT1 NFE2L1 ZFP36L2 GPM6A MT-CO1 GPR56 MT-CO2 PLOD2 NDRG2 NEFL PSMC3 SERF2 RAMP1 TBC1D15 NR1I3 RPL7 RPL36A ALDOA RPS28 ESCO2 ZNF385D SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 BMPR1B GPR37L1 FGFR3 NR1I3 DPYSL2 RPS15 ZFAND5 CLU GJB6 ITM2B MT-CO1 CKB CPE FTL BSG SIRPA NDRG2 ZBTB20 ZFP36L1 MT-ND4 ACTR10 WIF1 MLC1 RPL17 STXBP6 GPM6A RP11-111M22.2 CCDC124 HSPA4 APOE CRIM1 ATP1A1 ALDH1L1 TSPYL4 PLCB1 HILPDA PTPRS PREPL COX6C GRIN2C UHMK1 ATP5F1 COL11A1 IGFN1 ATP5B VEGFA WFS1 EDF1 CYBRD1 RPL17-C18ORF32 BRICD5 FAM189A2 HSP90AA1 MT-ATP6 B2M EZR S100B MTATP6P1 CST3 EDNRB MGST1 CTNNA2 BIRC5 MTCH1 MRAS MTRNR2L1 RANBP3L ID4 PFKP SLC25A5 CALM2 COL5A3 CTSD AURKAIP1 CLSTN1 CLTC PTGDS MT2A RAB5C EIF1AX ASAP2 GLUL PLTP NHP2 ATP6AP2 HIF3A UBE2F GPR98 ACSS1 UBA1 JUND RRAGA STON2 TUBB2B MT3 XAF1 ATP5I ITPR2 IDH3A CLTA HNRNPA1P40 SPCS2 MTRNR2L6 RPL3 LDHB SYTL2 ZNF385D RAB3B DNAJC21 GTF2H2C_2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 PTGDS RPL37A CLU ANGPTL4 HILPDA RAB3B RPL13A SLC1A3 MT-ND1 RPL38 MT-CYB NACC2 GPR37L1 PPP3CA MT-ND2 CNR1 RAB34 CHI3L1 B3GNT1 MAP1A RGS16 LANCL1 NDUFB8 RP11-111M22.2 RTN1 YWHAH ARPP19 VEGFA MT-CO2 NPAS3 SERINC1 SYN2 MAP4 SNAP25 CD63 SPARCL1 SARAF SLC1A2 PSMA7 CTNNB1 SYNJ1 FIGN C12ORF49 KLC1 NCDN POLR2I WSCD1 TXNDC17 HSP90AA1 S100A6 MAP1B CLTC RPS15 PLD3 TEX2 FAM134A NPTX1 ZBTB20 CDCA8 FLOT2 YWHAG LYNX1 MT3 ATP5A1 SYNPO BEX1 YWHAB MRVI1 SDS MAP1LC3B SCAND1 PTPRZ1 SEPT4 OAT EIF1B ADAM23 C18ORF61 CBX6 NMNAT2 RHOB MGST1 TRIM47 FAT3 RPL7 SCD5 BSN PRKAR1A ITFG1 ACTB FAM111A ATP5I MT2A NPTXR ATP5G3 CHN1 MAP7D2 C19ORF70 PLSCR1 RAB3IP LMO3 RGS12 HK1 WBP2 BCAS2 STMND1 BCAP31 DEXI CACNB1 HPSE2 TUBB2B DPYSL2 MED10 C19ORF53 ATP1B1 YBX3 ATP5E LMBRD2 MT-ND4L PNMAL2 MAST3 CRIM1 ASAP2 H2AFZ PSAP PPDPF SEZ6L CPLX1 PRKAR1B MT-ND3 PTPRN ERBB4 GLUL RAMP1 CDC42SE2 PLOD2 ATP2B4 SOCS3 C14ORF2 PBXIP1 RPS19BP1 WARS SERINC3 NFIA ARHGAP35 ZFP36 HDLBP MTRNR2L1 CABP1 SLC25A11 CLPTM1 COPG1 ATP5O PSMB5 PCP4 EHD3 VSNL1 NCALD CCK GFAP WSB2 RAN GPM6A BHLHE40 RTN3 HNRNPH2 GAPDH ATP6V1B2 MT-CO3 MEGF10 TUBB4A TUSC2 FAM3C PRKACB FBXO2 RPS2 ZFP36L1 APOE TMSB10 UBB RPL32 HSPB1 CALM1 ATP5J2 IFITM2 GTF3A APLP1 TSPAN7 CDKN1A ATP5B S100A1 CALM2 C1ORF115 TLN2 SLC7A10 SCAMP5 EDF1 C1ORF56 DKK3 AKAP12 RPL21 CMAS CFL1 ENC1 QKI RPL13 NRGN RTN4 GPR98 HEPACAM NAT8L HMGCR RP11-20I23.1 SPCS2 RNASEK-C17ORF49 SERF2 NSF MTRNR2L6 ATP6V0C HNRNPA1P40 PCDHA9 PCDHAC1 PCDHA4 PCDHA10 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU ANGPTL4 PTGDS CHI3L1 SLC1A2 MT2A CCL2 CPE GLUL MT-ND2 TUBB2B GAPDH SERPINA3 SPARCL1 BEX4 NFIA F3 MT-CYB SLC1A3 CST3 ATP1B2 MT-ND4 ATP1A2 PKM LGALS3 GNAQ GADD45B FTL ZIC1 C1QL2 MZT1 FAM96B DRAP1 H2AFZ RPL10A FAT1 SOD1 JUNB BGN PLTP GFAP NDUFA4 CHCHD2 CORO1B CALM3 VAMP2 NKAIN4 TMEM164 CALM2 VEGFA MT1X SIRPA ARSJ DNM3 PREX2 NCEH1 WIF1 PIN1 TRPT1 TUBB2A EDF1 SEPT4 EMX2 GPR56 ATP6V0B ATP1B1 SDS GEM PIEZO1 FGFR3 COL5A3 C10ORF10 RPS4X EFHD2 COX5B TMA7 MYEOV2 SELT RAB31 BAD LCNL1 SYT1 RNF182 MAPKAPK2 C4ORF3 ITPR2 BCKDK SCOC EIF1 PARP4 IFITM3 PFKP MAPK1 PSMB5 SELENBP1 AGT COX6C TRIM47 TIMP2 YWHAZ ZFP36 HTRA1 ADAMTS9 TMEM160 PMP2 ATP6AP2 GPX1 C11ORF31 RPS2 OAT ATP5J2 COX6B1 MSMO1 CD9 CHMP4B PSAP ZNF385A MT-CO2 RPL41 PDLIM5 MAP1LC3A TSC22D4 DPYSL2 HSPE1 CCK NHP2 HMGCR EDNRB SAP18 CADM2 NDRG2 CTXN3 OPA1 UQCRQ HILPDA PINK1 PTN GPM6A TBC1D15 ZNF385D RAB3B SYTL2 NUDT4 RNASEK-C17ORF49 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 CLU MT-CO1 CPE MT3 GLUL PLOD2 RP11-111M22.2 CST3 GPR98 CADM2 CKB METTL7A SERPINE2 CLPTM1 MT-ND2 HTRA1 ACSS1 HHATL MT-CO3 APOE CD63 SPARCL1 PTN FGFR3 PMP2 EFEMP1 SCD MTRNR2L8 PAMR1 WLS THSD7A LCNL1 AHNAK ITM2B STMN1 ZBTB18 PCDH17 STOM MFGE8 COL5A3 NFIA C1ORF233 AQP4 MT-ND1 PRNP DNM3 LCN12 CLDN10 ARL1 RGS12 WIF1 SCD5 OLFM2 NDRG2 ACP1 ASAP1 ALDH5A1 NCBP2-AS2 MTCH1 GJA1 ZBTB20 PSAP INHBA CYP2J2 PTMA S1PR1 AGT MAP7D1 FTH1 SNAP25 LRP1B MTRNR2L12 NPAS3 GAPDH ACACB ITM2C SUB1 ATP13A4 ALDH1L1 GRAMD3 SIRPA ITPR2 UBC SLC22A17 PAQR8 MT-ND4 TSPAN7 RTN4 SLC35B1 SYNGR1 SLC6A1 BEX4 CORO2B SOX21 THBS4 GNAQ YWHAB F3 CHL1 NBL1 DIO2 PRRX1 MAP4 TIMP3 MTG1 SLC14A1 ADORA1 ARFGAP2 ALDOA RPL13A RAB3B SYTL2 ZNF385D PCDHGA6 PCDHGA5 PCDHGA10 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 F3 ANGPTL4 CHI3L1 SLC1A3 GLUL RAB3B HILPDA FTH1 CLU MT2A PTGDS GPR37L1 MRVI1 CST3 NFIA MAP1B C1S THYN1 AEBP1 RTN3 MT-ND4 MT-CO3 ENO2 ITM2B SPARCL1 CPE GAPDH ITM2C NDRG2 ATP6V0E2 GFAP YBX3 MT-CYB PPIH MT-ND3 CADPS2 LDOC1 TCEAL2 COX4I1 SNAP25 C18ORF32 AGT ARL8B MFN2 RPL32 NDUFC1 C9ORF16 ATP6AP1 ACACB MLC1 PTPRS IGFN1 PFKP TMEM63A SCD NPTX1 FAM219A NDUFA2 STMN4 ATP1A2 METTL7A PITHD1 MTRNR2L12 RPS15 STRAP EML3 SLC25A5 GOLIM4 PPP3CA NEUROD6 CD63 GPR56 PKM RPL35 DYNLL1 SDC2 PFDN4 AKAP12 CALM3 PRKCB MT-CO1 ADORA2B TMEM130 HSPA8 HOMER1 MT1X SOD1 PHKG1 ATP1B2 RPL23A MT-ATP6 ALDH1L1 HLA-B SLC25A53 RPL31 SERPINI1 SRP54-AS1 OSMR HN1 IGFBP7 SSBP3 TMTC1 SERPINA3 RPL41 WARS PFN1 APLP2 CRIM1 MRPS21 PIEZO1 ATP6V1B2 EDNRB ATP6V1A COX7A2 WSB2 HPSE2 PAMR1 PSAP SLCO1C1 PSMA7 RAB34 D4S234E ACSS1 CDC37 AQP4 TSPO DKK3 PRDX5 RTN4 PPARGC1A SOX2 NGEF SLC6A1 NKAIN4 MAPRE2 PRDX2 TMSB10 ZFP36 ADM ADORA1 MT-ND1 CAPZB SHE TRIL TUSC2 PSMC5 DNAJC4 GJA1 CD59 MT3 CDK5R2 VWA1 TBC1D15 FAM3C TUBB3 RP11-219A15.1 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC14A1 TLE4 GPR98 GJA1 FGFR3 MRVI1 RPL26 NFE2L1 SERPINE2 MT-ND4 SLC1A3 PIK3R1 GLUL SPTBN1 METTL7A MT2A PAQR8 MT3 LHFP NAT8L SPARCL1 MT-CO2 SOX2 RANBP3L CHCHD2 RPL8 HSP90AA1 MYBPC1 SLC9A6 TSPAN7 PMP2 NFIA GPM6A AQP4 SERF2 ATP1A2 EDNRB SPON1 RP11-111M22.2 RPL37A NDRG2 GRIN2C STRAP TRIL APOE RHOB TMEM120A SLC22A17 RPS27A ATP1B2 RELN CAMK2G KAL1 FTL LANCL1 SIRPA ZBTB20 SLC39A12 LMBRD2 VEGFA MT-ND1 KRT8P3 HTRA1 SLC39A10 RAB34 NPAS3 SDC4 MT1E ENO1 FGF2 SCD5 CADM3 CASP7 PPAP2B KIF21A TOMM7 BMPR1B SLC6A1 SLC12A5 WSB2 TSPYL1 PTGDS UTRN BSG CLDND2 HIF3A BAALC CORO2B RAB5C ACTG1 PFDN1 GFRA1 CALM2 PDK4 ACSS1 ID4 COL5A3 PREX2 ITPR2 ARHGAP24 ZFAND5 S1PR1 ZNF385D SYTL2 RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 ZBTB20 RAB3B FTH1 LMO3 COL5A3 QKI SERPINE2 CLU ARFGAP2 MT2A MT3 HEPH NFIA RPL41 PHF11 GPR37L1 GLUL KIF1A PPAP2B CKB CPE SLC35B1 ITPR2 ATP1B2 MTRNR2L12 APOE PREPL MT-ND4 CFH ATP6V0E2 PLCB1 CHL1 SEPP1 RTN4 EPHB1 RP11-146N23.1 FTL AQP4 RHOB BHLHE40 AP2B1 GFAP ZFAND5 SNCB SKP1 RPL38 RPS2 CA11 GADD45GIP1 CCT5 WIF1 NCOA4 MTRNR2L6 STOX1 CRIM1 DDR2 GPR98 TM2D3 CRIP2 FGFR3 EIF4A2 TCEAL3 PTGDS EDNRB OLIG2 PDK4 PEBP1 GJA1 PKM MLC1 METTL7A CLSTN1 FKBP8 PGK1 SPARCL1 KLHL5 RAB4A LMBRD2 CA8 SH3BGRL2 RPS5 CLTC HMGB1P35 RORB ATP1A3 AEBP1 NDUFA2 KIAA1755 LPAR6 SRP14 RPS27A PCSK5 TRIM37 FOXO1 PEA15 MYO10 CALM1 TUBB2B DPF3 KIF21A PPP3CA DNAJC4 CHN1 PTPRZ1 MTRNR2L1 EFR3A HEPACAM TF CNTNAP3 MTND2P28 ALDOA MT-ND2 CALM2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 CHI3L1 CLU SLC1A2 CST3 F3 MT-ATP6 GLUL RAB3B EIF4A2 ZNF385D DIO2 CPE PTPRZ1 MT2A SIGIRR MT-CO3 MT3 APOE SERPINE2 GAPDH MT-ND3 HEPACAM PON2 SERPINA3 UQCR10 FTH1 MYL6 RHOB ZFP36 CADM2 TRIM47 MTATP6P1 JUN TBC1D15 HBB TUBB4B COTL1 GABRA5 DNER GPR98 SEC61G SUMO1 GPR56 NME1 DNAJC21 ETV5 IL12A ATP6V0E2 EPS15 ATP1B2 GJA1 APLP2 SPARCL1 HPSE2 PSMB3 NDP MAPK1 NAT8L NDUFB4 XAF1 PDK4 PAMR1 NPAS3 AQP4 GPCPD1 MGST1 NHP2L1 YWHAB CD63 SELENBP1 AP1S1 MT-ND2 MT-CO2 PRKCB EIF1B LRP1B COMMD6 LDHB KIF21A SCN1B APOL6 PLTP MTRNR2L1 OSMR D4S234E NPTXR RHEB VDAC2 GNG3 CHN1 GDI1 MT1X TSC22D4 MYEOV2 PTGDS DDAH1 SRR MRAS FGFR3 PLOD2 ZBTB20 CX3CL1 SLC38A1 COX14 SPOCK2 SDC2 TIMP3 PI16 TUBB2B RAMP1 YBX3 LAP3 NDUFA2 ETV1 PSAP DYNLL1 GPM6A NRF1 NIPA1 CKB H2AFZ ALDH1L1 ANGPTL4 EFR3A NACC2 CXCL14 CALM2 PSD3 TMEM120A ITM2B UBC EDNRB ARPP19 METTL7A SLC9A1 MRPS7 VEGFA SOX6 FAM189A2 MTRNR2L6 RPL21 RNASEK-C17ORF49 RPS10 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 MT1E SLC1A3 APOE MLC1 GLUL SPARCL1 MT1X MT2A WIF1 TBC1D15 UQCRC1 MTRNR2L12 F3 SIRPA DNER ZFHX4 PTGDS ITM2B GJA1 CST3 METTL7A FTH1 MT3 SLC6A1 ID4 FGFR3 ZNF385D RAB3B SYTL2 VAV3 MT-ND4 SERPINE2 SOX9 CKB ARHGAP29 KIF1A COPE SLC25A48 UBC CNP ZFAND5 RPL41 FTL COL5A3 MTRNR2L8 SLCO1C1 EDNRB CETN2 COX7B MTG1 RAB5C CLU ACOT7 TALDO1 MASP1 TXNIP HSP90AA1 CAPZB TIMP3 UTRN YJEFN3 GPR37L1 PEA15 LAMA2 MT-ND2 VEGFA PKM ADAMTS1 NDUFA4 TUBB4B CLTC CPE RTN4 LINC01296 LRRIQ3 ARL8A CCDC69 UBE2N NDRG2 RANBP3L RAB7A DIO2 GAPDH ATP6V1A CHI3L1 CHRDL1 AGT C1S CRIM1 H2AFZ CADM2 NCKAP5 RPL11 PPAP2B EMX2 HHATL PTPRZ1 NDRG4 AQP4 SCD5 PLD3 CTNNB1 GPR98 RHOJ ZBTB20 DYNLRB1 CYBRD1 PON2 PAQR8 RPL13A NFIA CFH ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 RAB3B SLC1A3 ATP1A2 MT3 PTGDS PTPRZ1 GPR98 PTN GLUL S100A13 ATP5I GJA1 SPARCL1 MT1X GPM6A ITPR2 CPE ZBTB20 ITM2C TSC22D1 ATP5E GNAQ FTL C10ORF54 AGT CALM2 CTSD FTH1 GABRG1 ACSS1 TLR4 NPAS3 CLU GJB6 SOX6 CYCS MT-CO2 CADM2 USMG5 QKI RPL35 ZIC2 ARHGAP24 F3 LMO3 RHOJ PREPL FAM219A ASAP2 ROBO3 LYPD6 ZFHX4 PDLIM5 PCDH17 TBC1D7 VAPB ARHGAP35 UBA1 RPL7 TMEM120A SLC14A1 PBXIP1 SEPW1 CLSTN1 MT1F COX7C TM2D3 SPTBN1 POU3F1 PIP4K2A DDAH1 SDC4 EDNRB ERBB4 CAMK2G DDR2 CETN2 ALDH1L1 C5ORF47 UBQLN2 SOX9 ATP5O S100B COX17 SLC2A1 MGST3 UQCRB MT-CO1 DPYSL2 COX7B MAGED2 ARL6IP5 HSPA8 GLIS3 RHEB CYP2J2 NAPB RPL21 MT1E RANBP3L INPP5F PRDX1 COX7A2L TMEM123 UQCR10 KLHL5 ZFP36L1 SLC39A12 ARF1 ACACB CHN1 COL5A3 SERF2 MTUS1 VAV3 C8ORF48 TBC1D15 FARSA SERPINE2 ISCU ASCL1 NDRG2 ITGA6 HIF3A CST3 ENO1 PAQR8 RRM2B SDC2 DKK3 MRPL33 KIAA1755 EPS15 KCNJ10 GFAP OST4 PRNP TMEM132C GRINA FOXO1 NREP NCEH1 TSPAN7 BIRC5 UBE2N CADM3 NDUFA4 CTNNA2 MRVI1 SIRPA CNTNAP3 PHYHIPL TMA7 MTPN WIF1 TPT1 PSD3 PLOD2 COX5A GOT1 ITGB5 WBP2 MAP1B LMBRD2 S1PR1 HNRNPA1P40 RPL3 MTATP6P1 NGRN MT-ATP6 RPS3A ARF5 CFH RPL41 RPS26 PCDHGA6 PCDHGA10 PCDHGA5 ARFGAP2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 SERPINE2 ZBTB20 NFIA MT-ND4 GPM6A CPE MTRNR2L1 MT-CO2 C1S GLUL AGT UQCRB CD63 PTGDS PSAP GJB6 CLTC MT-ND3 PRDM16 PBXIP1 CREB5 CLU FTL GPRC5B DLC1 NDRG2 CKB GJA1 MT-ND2 CLDN10 MT2A SNAP25 GPR56 GLIS3 ID4 MT-CO3 B3GNT1 CSRP2 GNAQ PMP2 UBC ASAP1 TOMM7 ETNPPL PAQR8 ARFGAP2 TMEM63A GDI1 PGM2L1 TMEM164 UQCR11 COL5A3 HEY1 SH3RF1 GNG5 ASAP2 HSP90AA1 STXBP1 MT3 RPL23A ALDH1L1 FBXW11 SDC4 NDP MT-CO1 RHOJ PREX2 SSBP3 ATP5E DIO2 LGALS1 FAM69C RORB GPR37L1 MYL6 RPL12 PTN PLEKHG1 PCDH17 TMEM123 FGFR3 ATP1A2 SOX21 WIF1 TRIB2 PET100 MT-ND1 CNP RPL31 ETV1 AQP4 COL21A1 SEMA3B FIGN RHBDD2 DPYSL2 PCSK5 RAB6A QKI HIF3A ACTG1 PRKD2 DNM3 ACOT7 F3 PTPRZ1 TIMP3 CADM2 UQCRC2 ARL6IP1 UQCR10 HEPH ARPP19 ERBB4 UBE2E3 RANBP3L ITM2C ARHGAP42 PRNP NOTCH1 NKAIN4 SEPW1 TSC22D4 MAPKAPK2 LAMA4 ATP1B2 SKP1 RPL32 SCD5 RELN VDAC3 RP11-631M6.3 IDS RPL41 CFH GABARAP RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B GLUL MT-CO2 SLC1A2 SLCO1C1 CLU PTGDS CKB COL5A3 GPR98 SLC1A3 NFIA METTL7A MT-CO3 DDR2 CTSD MT-ND2 BAG4 MT-ATP6 QKI TTYH2 ARFGAP2 SCD5 HIF3A PREX2 UQCRC2 BIRC5 LRP1B WLS VEGFA DKK3 SOX6 COMMD6 LIMK1 BOC MAPK1 COX7B UBC MT3 MT1E CHL1 ENKUR F3 BTBD1 TSPAN7 NDUFB2 NDRG2 TUBA1B FAM89A ATP1B2 PTPRS NPAS3 MAST3 MYO10 SPR C1ORF56 MAPKAPK2 RPL31 FGFR3 CALM2 TSC22D4 MRVI1 MT2A FGF2 HSPB1 HILPDA SLC22A17 TNS1 GABPB1 MRAS CERS6 RPL23A GFAP CLSTN1 C10ORF54 ATP1A3 PFKFB4 SNAP25 MT-ND4 MT-CO1 AQP4 ATHL1 PHB BCL6 KLHDC3 CACNB1 MT-CYB RPS26 RGCC OPCML RNA5-8SP6 PON2 GJA1 DNM3 ZBTB20 MLC1 MT-ND1 FAT1 DPYSL2 TOPORS-AS1 CSRP1 MT-ND3 NKX2-2 SLC39A12 TPT1 PSAP TUBB2B THY1 CTNND2 HSPA4 SERPINE2 S100B CFH SERPINA3 AC244489.1 EIF5A2 HNRNPA1P40 SYTL2 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "astrocyte", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 MT-ATP6 MT-CO2 MT-CO1 MTRNR2L12 MTRNR2L1 SYTL2 RAB3B SYT1 SNAP25 CHN1 MT-ND3 MT-CYB MAP1B MT-ND1 CALM1 COL6A1 NDUFB5 MT-ND2 INPP5F SYN1 GABRA1 PPP3R1 EPS15 SLC17A7 LMO4 ATP1B1 GAPDH MTATP6P1 NEGR1 DNAJC21 TF SLC1A2 PRDM8 UBE2E3 ARL8B KITLG TUBA1B PNMA2 RAB6B ATP5O SQLE PRKACB ANKRD18A FAIM2 SERINC3 GSTO1 TSPYL1 SPOCK1 TSPAN7 PPP3CA TSPYL4 BAALC PRNP TMSB10 PEBP1 MT-ND4L PCBP1 HSP90AA1 CAMKK2 CNTN1 SCN1A SPARCL1 BASP1 ACTB RPL12 VAMP2 STMN2 VSNL1 TMOD2 STXBP1 NDRG4 CPLX2 CADM2 SSBP3 DPYSL2 MAP1A NRGN UBQLN2 MGST3 NR1I3 MTRNR2L6 IDS ARFGAP2 OR6D1P SYT17 ROBO3 SNCG POLD1 ARHGAP35 SLC38A1 RPL39 CTBP1 RHEB MLLT11 OLFM1 SEMA3A RPL41 PRKAR1A PGK1 HSPA4 TMEM59L TAGLN3 COX8A PPP2CB MDH1 OCIAD1 CISD1 ONECUT2 PRKCE EPB41L3 IGFBP5 PIK3R1 NCEH1 DYNLL2 TUBD1 IPCEF1 SERINC1 GBE1 STK39 CALM2 FKBP4 SARAF PSD3 RGS4 FTL RAB6A TOMM20 YWHAB AP2S1 ALDOC GPM6A SPAG17 CAMK2D YWHAZ MTCH1 SGK223 RTN4R GUCY1B3 ANKRD20A11P PLCB1 SEPW1 SLC6A13 TSC22D4 GPR98 KIF21A CADPS2 SKP1 CLIP2 ATP5H SLC6A17 APLP1 GNB1 CD99L2 AZIN1 CPNE8 SAP18 TPI1 CAMK2G THY1 CAPZA2 APBB1 EIF4A2 RAB40B TPPP TENM1 HSP90AB1 EXTL2 PPIA PSAP ECM1 SNRPN TOMM7 CNR1 ETV5 CKB NAPA CDH7 BEX4 MTRNR2L8 AES PSMC1 ATP6V1C1 HCN1 UQCRH MBP EID1 PREPL PHYHIP C1ORF115 UBE2V2 RAP1GDS1 DDAH1 CTNND2 WSB2 COL24A1 OPA1 EIF1B RASGRF2 LMBRD2 BIRC5 FAM174A SLC7A8 ATP5B FTH1 RAB3IP APP PFN2 ATP6V0E2 SLC12A5 TCEB2 ARF3 GFRA1 CREG2 SYNPR TRAPPC1 NECAB1 C6ORF1 DNAJC5 PLEKHH2 RTN3 CBX6 YWHAG SIRPA PIP4K2A PRSS3 PPP1CB MTND2P28 PRUNE2 MAP7D2 NR2F2 ENC1 GLIS3 SLC22A17 OAZ1 LINC01296 KLC1 OPRK1 GFRA2 GNG5 ITPR2 ABHD14A MORF4L1 TUBA1A FXYD6 ADAM23 RPL13 FAM127A PRKAR1B SLC25A22 TALDO1 GDI1 NPTX1 ATP1A1 BNIP3 CFL2 TMEM150C ATXN10 AP2M1 RP11-111M22.2 RPL38 LGI3 GPX4 CAMK4 NPTN NWD2 MORF4L2 C1ORF52 IDI1 NEFL GAP43 UBE2M SLITRK1 EIF1 GRIN2A RPS27A RPL37A DSTN DISC1 BRINP3 PCSK1N CAP2 PTPRN HMP19 TPD52 NUAK1 ACTR6 TCEA2 APOL6 ATP6V1G1 PTCHD4 TSC22D1 KCNH5 CCDC124 RPL6 WBP2 NTNG2 SCN3B CALM3 ESYT1 PITHD1 YWHAH ENO2 C14ORF2 VDAC3 RPS2 CABP1 ARF1 FSCN1 RTN4 NELL2 NHP2 YBX3 SLC38A11 MAGED2 GNAQ TMEM35 PEF1 OAT UQCRC1 ELAVL2 COX4I1 PI4KA ATP5I ARL4C EIF4G2 LDHB RPS15 TRIM59 ATP6V0C RP11-20I23.1 RPL17-C18ORF32 JAKMIP1 RPL17 MIF TUBB AC244489.1 PCDHGA6 PCDHGA10 PCDHGA5 GTF2H2C_2 ZNF385D CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-ND2 RAB3B MT-ATP6 RTN4 GRIN1 MT-CO2 GNAQ SERPINE2 ZNF385D MTRNR2L12 CCK PREPL ENC1 HPCA LMO3 MT-ND1 CALM1 GRIN2A MTRNR2L1 DNAJC21 RP11-219A15.1 CHN1 HSP90AA1 ATP6AP2 CHL1 MAP1A SYT4 SYT1 DKK3 RP11-111M22.2 MTATP6P1 SCN1B JUND PPP2R2C RTN3 MT-CYB PITHD1 NECAB1 SPARCL1 TOMM20 MT-ND4 MT-ND3 PSD3 HTR2A LPPR4 GNB1 KCNAB2 CABP1 CALM2 MT-CO1 HMP19 CNTN1 YWHAG TF PCMT1 PPP2CB ARPP19 TMA7 RNF212 CA11 PSMD12 TMSB4X ATP5E RPL7 THY1 NPTXR CERS6 ATP6V1A SV2B TMOD2 VPS35 AP2B1 RPL36A COX6C NDFIP2 MRFAP1 CNTROB HEY1 BSG FGF12 NEGR1 HMGCR PRKACB KIF3C PNMA1 PEX5L PTGES3 TSC22D1 FAM150B MAP4 ANO3 SPDL1 SCN1A PRKCB RPL39 MT-CO3 PPP2R2B MAPRE3 TPT1 NDUFB1 LRRIQ1 SNN CX3CL1 LIG1 BHLHE22 CRIP2 CAPZA2 C1ORF52 SYT11 CAMK2G DGKG ATP9A PEG10 SEZ6L CKB KCNA1 MBP TSC22D4 SYNJ1 RP11-195F19.5 RGS12 AURKAIP1 MTRNR2L6 CALM3 WARS AP2S1 RPL35 CCDC25 CACNA2D2 TUBB2A CADM2 ROBO2 HOMER1 CREB5 S100A6 COX4I1 MAP1B RNF152 LMO4 SHISA8 YWHAQ TMEM59L SLC12A5 NRGN MDH2 PDP1 JUN PTMA PGM2L1 WBP11 SDCBP PLD3 GAP43 ATP5C1 SNX3 CDK5R1 LMBR1 RPL37A SMIM13 NAPB TMEM65 FKBP1B ITM2B RPS15 TAGLN3 UBE2QL1 OCIAD1 EPHA6 SLC17A7 OPN3 APBB1 TENM3 WBP2 BEX4 PRNP KIFAP3 MAPRE2 MAP2K4 SCAMP5 MRPL33 ETS2 UBB MTRNR2L8 KCNV1 ATP1A1 ACTB PNKD FAM149B1 BCL6 LINGO1 FAM84A SOD1 SCG2 CDH8 GPM6A KLHDC3 ID2 APP RPL17 RPL17-C18ORF32 SERF2 ATP6V0C IDS RPS26 RPL17P50 RP11-20I23.1 GABARAP GTF2H2C_2 TUBB SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MTRNR2L12 RAB3B SYTL2 MT-CO2 MT-ND1 SNAP25 PIK3R1 MT-ND4 PRKCB ZFAND5 GPM6A CALM1 SERPINE2 NRCAM KCNAB2 SLC39A10 SYT1 RTN3 CREG2 ETV5 CKB PRKACB ATP1A3 TBCA RP11-219A15.1 RAB40B PSD3 RPL37A HNRNPA1P40 ATP1A1 LRRIQ1 KIF1A APLP2 PCDH19 MT-CO3 FTH1 MPP1 SMIM13 RP11-111M22.2 NCEH1 CDK5R1 MRFAP1 MARCKS CLIP3 BSN TUSC2 KCNA1 SNX17 DLD CDH7 CABP1 MARCKSL1 SERINC1 PPP3CA SLIT1 SCN1A SLC8A2 VSNL1 POU3F1 TMEM130 BAALC USP5 TENM3 PTPRN NGFRAP1 TUBD1 NFIA SERF2 RASGRF2 ARF1 BCL11B CHN1 CDHR1 PEBP1 OAZ1 PRKAR1B GNAQ BASP1 NDUFB1 PREPL SLC12A5 CADM2 FGF12 C18ORF32 IGSF21 MRPL55 PGRMC1 SYT4 ATP1B1 BIRC5 EIF1 KIF5A JAKMIP1 TSPYL1 PNMA2 ENC1 LGI3 NAP1L3 EGR3 MTRNR2L8 FBXW11 NDUFC2 EGR4 MTRNR2L1 MAPK1 CRKL NECAB1 ZBTB20 MRPL20 SLC17A7 MT-ATP6 MAST3 RAB27B PTPRS AP3S1 IQSEC1 GSK3A SPON2 ZNF804A RNF208 MT-ND3 APOE CHMP5 DPYSL2 EDIL3 NAT8L TMEM59L CDK17 APP FAIM2 ARL6IP5 SOD1 GSTP1 CAP2 ATP2A2 LZTS1 CDH8 UBE2N STAG3L5P RPS27A HSP90AB1 GRIN1 PNKD CDH22 PCBP1 MAP1B CACNG3 RAB6A RTN4 RPL31 MTRNR2L6 RELN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 SYTL2 MT-ND4 MT-ATP6 SNAP25 MT-ND2 MTRNR2L12 NECAB1 MT-ND3 RP11-111M22.2 RAB3B ATP1B1 ENC1 CHN1 GRIN1 RTN1 ATP2B2 EIF4A2 OXR1 PRNP VSNL1 CCDC25 MTRNR2L1 PGM2L1 CADM2 PIK3R1 YWHAG TSPAN7 MT-CYB TSC22D1 EIF1AX PNMA2 ATP1A1 LINC01296 FAT3 RASGRF2 CKB LMO4 LDB2 PPP3CA CERS6 CLU NAPB MBP INPP5F PSAP APLP1 ELAVL4 SYT1 SYT4 NRCAM TLN2 SLC22A17 KIF5A MT-ND1 RAB3A SLC12A5 GABRA1 NR1I3 RP11-219A15.1 MTRNR2L6 IDS CYB5R3 DCTN3 NDFIP1 TERF2IP PSD3 TSC22D4 CTNND2 HK1 PVRL1 MTND2P28 WDR47 MAOB TMA7 PRPS1 STXBP1 TUBA1B ARHGAP35 PSMD8 DHCR24 GDI1 TIMP2 DPF3 PLOD2 PPIA SCN1A MAPK1 AP2M1 GLRA3 PRDX2 MGST3 HSP90AB1 SLC25A4 RANBP1 EIF1 GDA FBXW11 PJA2 RPS5 CACNG3 RAB11A CCDC184 GAP43 MAPRE2 RPL19P18 PRKCB PLD3 RLIM RAB2A PRKACB MTPN SLC8A2 ERH TUBB4A CMAS NUDT4 PPARGC1A MGST1 CABP1 GUCY1B3 RPL38 SARAF HMP19 SYNJ1 PMEPA1 STK24 PTK2B GSK3A ENO2 HOMER1 ARHGDIG UQCRB MAGED2 SERPINI1 WASL PAFAH1B2 ANXA7 SLC6A13 CSDE1 BSN BEX4 SPOCK1 RPL13A JUN CDK5R1 SLC17A7 EGR1 ARPC5L CEND1 GPM6A PI4KA GAPDH KIF1A HOPX TMEM130 MTRNR2L8 BIRC5 DYNLL2 CAB39 SH3GL2 FAM84A AP1S1 ONECUT2 PTGES3 APLP2 YWHAB NEFL PREPL RAPGEF5 FAM19A1 DNM3 CDH8 VSTM2L SNCG BEX1 VAMP2 STMN1 SLC9A6 CA11 SYT13 NCALD LIMK1 NDUFV1 NDUFS5 RPS28 GNAQ PODXL PPP3CB EDIL3 RAB40B SERPINF1 PDE1C SSBP3 PINK1 SLC39A10 MTATP6P1 KCNC2 SPTBN1 CALM2 FBXO2 CLSTN1 AES HSP90AA1 RFK TTN PHYHIP NEFM SELT CAMKK2 LINGO1 ATP5H DDAH1 PLCB1 ZFAND5 PTPRN REPS2 SERINC3 FTH1 ATXN10 CLTC RELN CADM3 TUBA4A PEA15 ABCA8 CHMP4B DKK3 USP5 TSPYL1 CDH6 SERF2 BSCL2 RPL41 KRT17P6 RPL21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-ND4 MT-ATP6 ZNF385D MT-CYB MTRNR2L12 HNRNPA1P40 MAPK1 NECAB1 SYT1 RP11-219A15.1 PRKCB ATP1B1 MT-ND3 MTRNR2L8 ARFGAP2 TMX4 SNAP25 NGFRAP1 SLC39A10 PIK3R1 PRKCG MT-ND1 DCLK1 GRIN2A CA11 OLFM1 CKB BIRC5 CARTPT DPP6 RTN4 APLP1 VAMP1 EIF1AX ISCU HOMER1 KCNK1 MAGED1 MAP2K4 FAM84A CCK FTH1 MAP1B CFH MTATP6P1 COL6A1 RPL39 PEBP1 VDAC1 SPRYD3 NRGN VSTM2L LHFP HSPE1 BCL11B RTN3 CDH8 SLC38A11 GHITM COX7C TOMM70A NEFM SLC7A1 FNDC4 SMIM12 CLIP3 COX5B ELAVL4 ELAVL2 PDP1 EIF4A2 TOMM20 BASP1 FAM131B MBP CADM2 SDCBP RPS2 NMNAT2 ZNF365 MT-ND2 RAP2A RP11-111M22.2 MAP1LC3B EFR3A EDN1 NUDT4 GAP43 PHYHIP AP2B1 ATP6V1F MRAS OCIAD1 SUMO2 PHB MAPRE2 BAALC CDH24 CREG2 VAMP2 CLSTN1 PPP2CB ENC1 CACNA1H APLP2 KIF21A MT-ND4L ATP6V0E2 NEGR1 ATP5C1 UBC EPB41L3 KIF5A NCAM2 ARL8B BEND5 PSMA7 GPM6A GLRA3 TUBB2A FAIM2 MORF4L2 VSTM2A SELT HTR2A PTGES3 PPIA TPPP STXBP1 AZIN1 PPP2R2C SEPW1 HSP90AA1 COL24A1 WDR47 PGAM1 KCNV1 ETV5 CDK5R1 PRKACB C1ORF52 RAB4A PAM RAB11A KCNAB2 SCN1A NOS2 TMOD2 TLN2 MAP1A RAPGEF5 CALM1 SV2B STX1B RNF208 CHN1 RTN1 PPP3CA LSM4 AK5 LAMA4 PTK2B LAMTOR5 RPL36A RPS26 AC244489.1 RAB3B SYTL2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ATP6 PLP1 MT-ND3 MTRNR2L12 MT-CYB MT-ND1 CALM2 FTH1 MT-ND4 SYT1 MT-CO2 MT-ND2 DKK3 ANKRD20A11P OPN3 PSAP CHN1 COL24A1 MTRNR2L1 CYBRD1 YWHAZ ACTG1 H2AFZ NDUFAF2 SPOCK1 RAB3IP MTATP6P1 ERMN SLC17A7 CDK5R1 RPS28 PTGES3 MRPL20 MTRNR2L8 MAP1B TESPA1 RTN4 EIF1AX CLU TSC22D1 QDPR ITM2B PIP4K2A PPP3CA SCN3B RPL38 CALM1 KIF1A PRKACB CYFIP2 SSTR2 PRKCG THY1 MBP RP11-111M22.2 PLD3 OPCML PREPL RAB3B ZNF385D SYTL2 CFH IDS TF ESCO2 TMSB10 RP11-82O19.2 FAM3C SNAP25 NELL2 HOMER1 PAM NAT8L STX1A TCEB2 PINK1 ATP1B1 RSL24D1 EIF4A2 C10ORF90 RASGRF2 SERPINE2 NEGR1 ID2 PRNP GNAQ PSD3 CORO2B PCBP1 MYOM2 COL25A1 CCK RPS27A CHP1 LYNX1 UQCRC1 TPGS2 YWHAG TMEM130 PTPN20A OLFM1 PEBP1 ARL2BP DNM3 KIF21A HHIP SPARCL1 USMG5 PPP1R14A NPTN ATP1B2 SLC38A11 SCN1B C11ORF31 OPA1 FAM107B GSTP1 REEP2 VSNL1 DHCR24 TMEM65 HSPA2 BSN SCD RPL13 WASF1 TMSB4XP4 ANXA6 TMEM147 RPL11 PGM2L1 SCD5 CAMKK2 SLC31A2 TMEM14A ITGA11 PPIA GABRA1 GRIN2A TUBD1 TOLLIP PRKCB STMN2 RTN1 PIK3R1 NARS TUBB4A CLIP3 SLC24A2 TEX40 LRRIQ1 C14ORF132 JUNB DYNLL1 ASAP2 ZBTB20 DPY19L1 FIS1 LMO4 HS6ST3 HMGCR RPS5 SEMA3C EIF4G2 PKM NPM1P30 CNP CBX6 PCSK1 NRGN RAPGEF5 SLC6A12 NPTXR ANKRD18A ONECUT2 CAPZB HN1 STMN3 EIF1 GFAP ARL6IP5 TBR1 CYP26B1 COX7A2L ZBTB18 SULT4A1 UQCRB TMEM144 MOBP NECAB1 SLC6A17 CMPK1 HOPX TERF2IP PJA2 ZNF365 PRDX1 PTPRS GDI1 CFL1 VWA1 ATP5G1 DPYSL2 RPL37A SSBP3 HSP90AA1 NDN NGFRAP1 MAP4 CTNNA3 MT-ND4L SPOCK3 RAB3C HDLBP CCDC124 SLC39A10 GAPDH LL0XNC01-16G2.1 EPB41L3 LMBR1 NFIA RASSF8 AK5 ATP5G2 VAMP2 OAZ1 PET100 MACROD1 SERINC1 ERBB3 TGOLN2 RP11-20I23.1 ATP6V0C BSCL2 RPL3 SERF2 AC244489.1 PCDHA10 PCDHA9 PCDHAC1 PCDHA4 ARFGAP2 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SNAP25 ENC1 MT-ND1 MT-CO2 MT-ND2 MT-ND3 CKB MT-ND4 MT-ATP6 GPM6A WASF1 MT-CO3 RAB3B RP11-219A15.1 NECAB1 CNTN1 MAP1B RP11-111M22.2 PIK3R1 PEX5L SPARCL1 TF BASP1 SYT1 NFIA RPL38 CPLX2 UQCRB IDS HSP90AA1 PPP2R2C STXBP1 DKK3 RTN1 APBB1 ATP6V1B2 ATP2B4 AP2M1 CHN1 GRIN2A PRNP PSAP CAP2 RPL37A PRKACB ANXA7 RPS12 RAB6B SYN2 PRKCB CALM1 RTN4 PNMA2 RPL31 CLSTN1 SLITRK1 RPH3A CYP1B1 PDP1 DGUOK MAPK1 RGS4 PPP3CB MTRNR2L12 ATP5J2 CFH COX14 TEFM ENPP2 CALM3 CDK14 FKBP1A CALM2 USP5 ATP1A1 PTPN20A SYNGR3 SERPINE2 RPL3 INA HMP19 FAT3 CAMK4 ATP5A1 NAP1L2 IGSF21 RPS6 TSC22D1 PMEPA1 ACTR1A TPT1 LZTS1 HOMER1 TMOD2 SNAPC5 TOMM34 GNB1 KCNC2 GTF3A FAM84A STMN4 PHYHIP KCNAB2 RPL13 ACTB PEA15 ATP2B2 RPS10 SPOCK2 AES SLC17A7 MAP1LC3B TOMM22 PPP1CB HS6ST3 ARF5 CORO2B SCN3B C19ORF53 KIF5A GDI1 SCN1A SAMM50 TUBA4A TALDO1 APLP2 SUMO2 ENO1 KIF21A ELMO1 MPC2 ITM2C CDK5R2 PSD3 RAB11A VDAC3 CADM2 ATP4A C3ORF80 CSDE1 ARL6IP1 SLC22A17 VSNL1 MT-CYB SERP2 SPOCK3 NRCAM EIF1AX EIF4A2 SLC8A2 SLC38A11 NARS LMO4 TMSB4X MARCKS SNRPN ATP1A3 PPP2R1A CHMP4B MTATP6P1 POU3F1 LYSMD2 ARL1 TPD52 ATP5I SV2B PKM OLFM1 PCDHGA10 ARF3 CADM3 YWHAB HCN1 SPRN KRAS CYCS RRM2B GRINA TESPA1 LDB2 TLE4 ANKRD30A C1ORF52 SLC9A6 OAZ1 VAPB TSPAN7 PFDN1 LANCL1 MORF4L1 SARAF PGM2L1 NPTN NPTX1 SERINC3 UQCRH C19ORF10 GUK1 CTBP1 GNAQ ATP6V0D1 RAN PTPRS MLLT11 SYNJ1 HTR2A FAIM2 DCLK1 PRDX2 YWHAH LMO3 RTN3 ANKRD20A11P NGFRAP1 ZFP36L1 NEGR1 CAPZA2 NCDN CAMK2G DYNLL1 ATP1B1 AK5 RPS28 EGR1 PSMB5 SLC12A5 SCAMP5 TSPYL1 NIPA1 WBP2 PDE1A RP11-20I23.1 ATP6V0C RPL41 EPHB6 GABARAP RGS12 BSCL2 RPL36A TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 TBC1D15 SNAP25 MT-ND1 MT-ND4 MT-ATP6 MT-CO3 MT-ND3 RAB3B SYTL2 MT-ND2 MT-CO2 OLFM1 MTATP6P1 SYT1 ZNF385D BSCL2 NRGN RP11-111M22.2 SARAF CHN1 PPP3CA RTN3 MT-CYB LMO4 ENC1 MT-ND5 SYN2 MTRNR2L12 MAP1B RPL12 HSP90AB1 OR6D1P APP IDS PPIA EIF4A2 PSD3 CABP1 MYO1B SCN1A TSPYL1 TMEM132D NRCAM EDF1 PCDH8 HMP19 HOMER1 PGM2L1 PNMAL1 ATP1A3 PSAP PCDHGA6 PIK3R1 CLU RTN1 PPP3CB FXYD6 PRKACB D4S234E OPA1 KLHDC3 MAP2K4 CCDC85B MTRNR2L8 PTK2B ATP6V1B2 RPL36A SUMO2 NAPB TMOD2 FTH1 NPTX1 GRIN2A TSPAN7 CFH PCDHAC1 NGRN ESCO2 NR1I3 NDUFB5 LRP1B KCNH5 TM6SF1 PNMA2 CPNE8 UQCRB TCEAL3 NECAB1 SERINC3 PEX5L NPTXR IL6R BTBD1 BEX1 PDP1 CD99L2 NGEF CDK17 DYNLT3 DYNLRB1 PTMA TMEM130 ATP5I SKAP2 ATP5G3 DPYSL2 TCEAL7 TUBB4B GDI1 OCIAD1 DCTN1 NDUFB11 BHLHE40 DSTN C16ORF93 SNCB EGR1 BEX4 CKB RPL41 RPL32 CAB39 ROBO2 TPT1 CREG2 LMO3 YJEFN3 ZCCHC17 ADCYAP1 RPS3AP12 UQCRC2 DNAJC4 UBA1 TTN PSMD2 TESPA1 FAM127A SLC12A5 ELMO1 ATP5B DNAJB6 SLC38A11 ETS2 GTF3A TKT ADCY10P1 SLC39A10 UQCRFS1 SRM CNRIP1 ATP1A2 INA NUAK1 RAB6B MTG1 STXBP1 GPR98 RPS6 ATP6V0E2 NGFRAP1 CBX6 SYNGR1 ENO1 MYL6B PMEPA1 DNAJC5 TRIM36 DYNLL2 ARPP19 MOBP YWHAH CNP TCEAL2 TM2D3 GAPDH MAGED1 PRNP STMN3 ATP9A SLC7A1 NDFIP1 ARF5 KLHL5 FGF12 QDPR BAALC KIF1A PLD3 RTN4 SYT11 NRN1 RAB11A STMN4 RPL23A GPR158 VSNL1 CHL1 COX7C CLSTN1 UBA52 MAOB TMEM155 MRPL15 ENO2 SLITRK1 COX5A HSPA4 RAPGEF5 PAFAH1B2 SLC22A17 HSP90AA1 PINK1 BRINP3 EIF4G2 ATP10A DCLK1 AP1S1 PNMAL2 CISD1 PRKCB GPCPD1 RPS12 MYEOV2 TPGS2 TMEM14A ECM1 ONECUT2 SPARCL1 LYNX1 SCN3B ATP5G1 DDN RPL13 TMTC4 GRIN1 PFKP PTPRN RPS28 NAA38 PJA2 SULT4A1 PLCB1 NDFIP2 KIT HMGB1P8 MFSD6 ENSA GABPB1 RILPL2 ZFAND5 LDB2 RPL37A TRIB2 PDGFRB DRAP1 CTU2 HMGCR TUBD1 RAB6A APBB1 SPON1 PTPRT SYT4 CTSD SLC6A17 TMEM150C FER1L4 THSD7A SDCBP PPM1A PHYHIP GOT1 NDRG4 PEBP1 PCDH17 PEPD SLC17A7 TOLLIP FAT3 UBC CLTC ARF1 BIRC5 PREPL TGOLN2 MMD WASF1 PNKD CALM3 MAP1LC3A SLC30A3 CPE HOPX SUMO1 CALM1 PGK1 TERF2IP NDUFA4L2 BTBD10 SLC19A3 COL12A1 MET LUZP2 LINC00087 RCAN2 JUND TRIM37 NDUFB8 MLF2 PPP2R2B SPTBN1 CADM3 SOD1 CAP2 MTX3 LDHB PTPN20A RPL3 RPL7 FKBP1A RPL13A CYB5R3 AC244489.1 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B MT-CO1 SNAP25 MT-CO3 MT-CO2 MT-CYB TBC1D15 RPL37A ENC1 RTN4 RP11-111M22.2 CHN1 PRNP RPL38 CALM1 MT-ND4 ARPP19 FAIM2 SYT1 CLU PREPL MT-ND1 MTRNR2L1 PPP3CA MT-ATP6 UQCRB SLC17A7 CNTNAP5 STXBP1 COX7B SERINC1 GPM6A DPP6 MT-ND3 ANO3 RPL12 MT-ND2 DKK3 RPL31 RPL26 COX7A1 TMEM130 GABRA1 PGM2L1 ESCO2 PRKCB TOMM20 ZMAT2 SPARCL1 MTATP6P1 ZBTB18 RPL32 HOMER1 TMTC1 LMO4 CIAPIN1 SIRPA MAPK1 NDUFA13 YWHAZ HSP90AA1 PACSIN1 ARL6IP5 DYNLRB1 TSPYL1 MAP1B LMO3 DNAJC5 STX1A TMSB10 YWHAB ARL6IP1 FBXO2 RPL10A RPL13A PRKCQ RPS12 PSD3 ISCU LANCL1 BAI2 RTN3 ATP6V0B RPS27A RPL35 NPTN HOPX PRKACB SYNJ1 RAPGEF5 SUB1 PTPRS ATP5A1 NECAB1 FAM19A2 SV2B IDS TUBD1 PLEKHD1 SLC12A5 CLTB JUN LAMTOR1 MTRNR2L6 KIFAP3 EPB41L3 EIF1 SPOCK2 GPR26 MRPL15 ATP6V1C1 FBXW11 MT-ND4L IGSF21 WASL HS6ST3 ABHD14A RPL13 RPL15 OLFM2 UCHL1 VPS35 ARL8A SMS PPP2R4 NHP2L1 NEFL FAM134A GRINA OCIAD1 SLC26A10 DPY19L1 UBA1 RPL11 UQCRH REEP2 HDLBP PTK2B OPN3 LRRIQ1 SELT ATP6AP1 RPS4X CD59 LYNX1 PEBP1 ZNF365 KLHDC3 SYN2 USMG5 TLN2 RPS15 MAP4 RPL7 NELL2 AK5 GUCY1B3 UBE2V2 CYFIP2 MYL6B THY1 FAT3 TMX4 ATP2A2 RAB2A ATP12A PPP2CB MYL6 CCK STMN1 RPL17 CLTC C11ORF31 TUBB4B SLC39A10 RPL17-C18ORF32 PTMA CNGB1 TSC22D1 KIF3C CREG2 RANBP1 HSP90AB1 SERPINE2 ATRN DNAJB9 PODXL MAGED1 AHNAK2 PNMA2 COL11A1 CKB NUAK1 BCAT1 EIF1B ZDHHC12 APLP1 TCEA2 RPS28 PDE1A CRIP2 FAM84A CNTN1 TPPP RGS4 ABRACL ATP5E INA STMN4 LMBRD2 MRPS21 AQP4 PPP1CB TBCA IGFBP5 RTN1 BAALC CYB5R3 LAMTOR2 DMKN OLFM1 CDH8 TALDO1 GLRA3 NAP1L2 YWHAH AMIGO2 GNAQ NARS YWHAG PHF11 TESPA1 CALM3 MORF4L2 NEGR1 PSAP HMP19 SLC25A22 PHYHIP GDA SYT17 GDI1 ZBBX SYT4 CPLX2 MTRNR2L12 PEX5L CCDC25 PPP3CB RASGRF2 ATP6V1A MPP1 NPTXR MAL2 DOCK10 B3GNT1 TM2D3 GRIN2A CORO2B RPS10 BASP1 PRKAR1A DNAJC6 TP53I11 ARF3 PRKCG KIAA1045 EIF4G2 WBSCR17 PSMC5 C19ORF70 ADCYAP1 CERS6 ATPAF1 MTND1P23 ATP6AP2 APLP2 SLC24A2 TXN PAFAH1B2 PELI3 CDK17 HK1 NRN1 SPTBN1 MAPRE2 COX4I1 TENM3 GSTO1 CAMK4 LPPR4 ASAP1 AP2M1 ARF1 ATP1A1 UHMK1 BEX1 FAM127A SOSTDC1 NWD2 RPL36A AC244489.1 NSF BSCL2 NUDT4 RPL41 RPL18A RPL3 GPR98 LAMA2 RAB1A PCDHGA10 PCDHGA5 PCDHGA6 SYTL2 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 SNAP25 TMSB4X SYTL2 CHN1 HNRNPA1P40 CABP1 TMSB10 EIF4A2 AC244489.1 UQCRB BIRC5 TBC1D15 ELAVL2 CALM1 UBC SYT1 PRUNE2 PTMA OR6D1P CALM2 DPYSL2 MRPS21 ENC1 NECAB1 TUBD1 PLEKHH2 ARFGAP2 NR1I3 CTU2 SCN1B APLP1 EPHB6 PTGES3 FGF12 DYNLL1 BAALC BRINP3 RAPGEF5 MAP2K4 SMS SYNGR1 GUK1 FTL UQCRQ NRCAM PACSIN1 RPL31 RPL37A RTN4 STX1A MANBAL TMTC1 HSP90AA1 PREPL PALD1 SARAF TSPYL1 RTN1 KLC1 UCHL1 PDE1A GRIN2A CSDE1 WASF1 VAMP2 PRKCB TRMT112 NRGN GABRA1 BEX1 MAPRE2 SULT4A1 RORB NELL2 GAPDH OST4 TCEA2 SKP1 CLIP3 TPI1 SRP14 MORF4L1 LGALS1 RPL26 MRFAP1 RPL38 PKM NDUFB11 DCLK1 ATP6V1E2 PIN1 C6ORF1 CADM2 HPRT1 ATP1A3 NCEH1 CTBP1 SNCA ACTB NRN1 PPP2R2B CASP7 ALDOC AAMDC MLF2 INA IDI1 MGST3 GNB1 OXR1 FAM149B1 MRPS28 SPRN NDUFB10 COL11A1 VDAC1 MYEOV2 NCALD MT-ND4 CDK5R1 COX5B YWHAG TMEM179B CLU THY1 PLCB1 CCDC69 ARF3 POLR2K CREB5 AES C19ORF43 C1ORF52 ALDH5A1 DEXI TPRG1L NDUFAF2 DNM3 ZNF365 HINT1 NEGR1 MTX3 TPPP RPL32 MAP1B SPRTN ATP6V0E2 PGK1 LINC00086 PGRMC1 NEFM GADD45GIP1 FAT3 CDH8 UQCR11 BASP1 SCN7A RPS5 ATP1A1 DNAJB9 SPTBN1 CNTN1 CD63 DCC BTNL9 GLRA3 ELAVL4 MAP1LC3A HSD17B14 ALKBH7 RAB3A UBE2V2 CAMK2N2 SNN MT-CO1 OAT FAM131B NAPA KIFAP3 HOMER1 PPM1A TMX4 SCD5 WSB2 PTPRS ENO2 SPOCK1 CKB CLSTN1 RAB2A PSMD12 EDF1 KCNAB2 RCAN2 RPL3 SH3GL2 CRYAB GPNMB LMO4 TBCA DYNLL2 FAM219A COX7C MAP7D2 PRKACB YAF2 ATP2B2 YWHAZ NTHL1 MRPL51 CTNND2 TDRD5 AP2M1 C9ORF16 APEX2 STMN3 CORO1B NAPB YWHAB PIK3R1 RPH3A DIRAS2 MRAP2 NDFIP1 SLC17A6 NDUFB8 SLC38A11 KCNMB4 DAB2 MORF4L2 HMGCR EIF1AX SNCB TMSB4XP4 SLC12A5 SERF2 MRPL20 DPY19L1 RGS12 PRDX1 TMEM258 SNRPN MAP7D1 PET100 MRPL33 MT3 PRKCG TUBA1B SYNGR3 PRKAR1A ASAP1 VAMP1 DYNLRB1 PGM2L1 THYN1 ATP1B1 TSC22D1 SCN3B SLC1A2 PPP2R2C DHCR24 RBX1 SEPW1 ATP5C1 RAB3C RPL39 MAGED2 TUBA1A STMN2 NEFL RABAC1 SH3BGRL3 GFRA2 CTNNA2 ADAM23 NDRG4 SLC6A17 PINK1 ACTR6 LMO3 WARS APP GPX4 ATP5H BAI2 OLFM1 APBB1 ONECUT2 CXXC4 TMEM59L SLC25A22 TERF2IP YDJC SLC39A10 CCK CA11 RAMP1 RTN3 TOLLIP CDC37 NGFRAP1 RPL12 NAT8L POLR2M SNCG NDUFA4 ATP5G1 BSCL2 RPL6 IDS RPL13P5 RPL36A RPL15 ATP6V1G2 RP11-219A15.1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 SNAP25 MT-CO1 MT-CO3 SYT1 ATP1B1 MT-CO2 MAP1B CALM1 RP11-111M22.2 RAB3B NECAB1 CABP1 CHN1 STMN2 ENC1 FTH1 SLC38A1 ELAVL4 SCN1A GAP43 ATP1A1 RTN3 RTN4 PPIA EPB41L3 TSC22D1 NRGN CALM3 TERF2IP ONECUT2 FKBP1A COL24A1 COL5A2 MTRNR2L12 TMEM59L TESPA1 PGAM1 VAMP2 MT-CYB CSDE1 SPARCL1 RAPGEF5 BIRC5 ARFGAP2 NR1I3 MLLT11 NAPB GPM6A THOC7 SNCB NRCAM AES EGR3 ATP5I CLIP3 TMSB4X MGST3 SCN3B CST3 CKB APOE DYNC1I1 KIF1A EIF4A2 RPL15 TMOD2 EIF1B PLCB1 TTN ENO2 RPL6 YWHAZ CHL1 PEX5L UQCRH PCBP1 TCEB2 GRIN2A NUAK1 CREG2 STMN3 FAM84A SSBP3 RNF11 RPL13 STAG3 MAP1LC3A CLU DYNLL1 YWHAG MORF4L2 CDC42SE2 LCNL1 ARL6IP1 TF DNAJC21 AC244489.1 SKP1 TUBD1 GTF2B BASP1 PRKCB HTR4 PIN1 HS6ST3 ATP5E RPL31 AP2M1 ATP6V1C2 DCC NDUFA5 PEBP1 HOPX SMIM13 MT-ND2 SV2B RPL7 THYN1 SCD5 KCNH5 RP11-119H12.1 ATP2A2 RNF208 C9ORF16 RREB1 DAB2 BEND5 CCDC183 SULT4A1 NPTXR RIT2 PRKAR1B UROS MFGE8 SYNPR PRKACB PPP3R1 WASL FAM127A ZFAND5 GPR158 NCALD PIP4K2A SYT11 CERS6 RAB11A C19ORF70 HTRA1 TLE4 ARF1 LSM4 RHEB NUDT21 TEFM NDUFB2 CAMKK2 MT-ND3 PTPRS MTRNR2L8 PGK1 KCNAB2 GNB1 RASGEF1B KCNA1 ATP5C1 TMA7 GABRA5 FAT3 CALM2 ETFB HCN1 PTGES3 IDI1 RELN MARCKS DNAJB9 SPCS2 RBX1 HTR1F RPS6 NDUFA4 SLC25A22 MTRNR2L1 TIMP1 UQCRFS1 TNNT2 PPP3CB FASN UBE2QL1 SLC25A4 NEFM LRP1B RAB1A PSMB5 S100A6 CADM3 NRF1 UQCRB WFS1 ATP6V1F KCNV1 YBEY GDI1 OXR1 TPT1 TMEM144 CPLX2 ACTB ATP6V1C1 CTNNA2 KLHL5 WBP2 DCLK1 TOPORS-AS1 DGAT2 YWHAB CYFIP2 COA4 NDRG4 PTPRM MYO16 YWHAH MAPRE2 CLTC KLC2 NTN4 OAZ1 GLIS3 HMP19 PCDHA4 CTNND2 NDUFV1 TMTC4 DYNLT3 UQCR10 NDRG3 VDAC3 SLC30A3 CNTROB HOMER1 C1ORF52 ARPP19 MT-ND4 FIGN GSTT1 ATP2B2 RPH3A CDKN2D RPS12 RORB ATP1A3 PTPRN GPR37 NME1 CAP2 TUBB4A MAPK1 DMTN VGF COX6B1 PSMA7 MAP1LC3B MED31 SYT13 BSN ATG101 SERPINI1 TKT CCK SUMO2 ARL2BP HSPE1 CRKL ARL4D OR6D1P NTNG1 RPL26 PNMA2 BCAT1 CPE WDR47 JUND NPAS3 DGUOK IQSEC1 TPD52 NDUFAF2 PLD3 ZBTB20 SLC24A2 AURKAIP1 FAIM2 RPL32 PET100 MT-ND1 PITPNA SCN1B MAP7D1 ASAP1 CDH22 SPOCK1 GNAQ PNMA1 TUBB4B ELAVL2 NWD2 SH3GL2 TCEA2 CAPZB SNX10 PDCD5 ARL6IP5 FTL CDK17 SLC25A6 OPRM1 CAMK2D GRIN1 DYNLL2 CAMK2G PGRMC1 PPP1R9B IPCEF1 FERMT1 RAB6B NFE2L1 NEUROD6 SSTR2 POMP ELMO1 SCAMP5 CA10 QKI PCSK1 MAPRE3 RANBP1 TUBA1B ADAM23 TGOLN2 C18ORF32 PGM2L1 ATP6V1G2 GABARAP NUDT4 PCDHGA6 RP11-20I23.1 IDS EPHA6 RPL23A NGRN ATP6V0C RNASEK-C17ORF49 TUBB CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D SNAP25 TBC1D15 HNRNPA1P40 CHN1 PSD3 ENC1 MT-CO2 FAT3 FAM84A ITM2B FTH1 PREPL PCDHA4 PEX5L NECAB1 CPE OLFM1 ESCO2 GGTLC2 CKB DPYSL2 YWHAB GNAQ SKP1 FAM19A1 CAMK4 PSAP COL21A1 MT-ND4 SYNPR IDS TMOD2 SKAP2 GABRA1 VSTM2L STXBP1 MAP2K1 DCLK1 PNMA2 TBR1 RAPGEF5 OR6D1P SNRPN LMO3 RAB40B KIF1A STMN4 OXR1 PAFAH1B2 TUBB2A RPL41 PI4KA CADM2 CREG2 INA RTN1 TSPYL1 CALM2 MT-CO1 SLITRK1 APP ATP6V1A BASP1 PTPRZ1 CALM1 NDRG4 CALM3 RAB3B NR1I3 HPRT1 RAP1GDS1 RTN4 COX17 ATP5A1 CAP2 NEGR1 TMSB10 NTNG1 PRSS3 TMEM151A MSMO1 THOC7 CD63 CA11 TNNT2 BEX4 TUBA1B FIBP NWD2 PSMA7 BTNL9 PACSIN1 ARL8B TMEM14A CCDC158 MAP1B NPAS3 INPP5F SH3GL2 TDRD5 CDK5R1 C6ORF141 DYNLL1 PPP3CB DYNC1I1 NDUFA13 PSMD12 NGFRAP1 MPP1 MT-ATP6 MRPS7 SYT1 PPP1R7 CLSTN2 ESYT1 ZBBX GLUL OPA1 SELT SARAF EID1 BAG4 FKBP1A SPOCK2 SLC9A6 PDP1 SMIM12 SCD5 SMAP2 GRINA TESPA1 PCDH8 ADAM23 CISD1 ATRN TSC22D1 TRHDE PRNP CLU RPL6 EPDR1 LINGO1 MAPK8IP2 FXYD6 TCEAL5 HOMER1 TMEM59L SPON1 KCNV1 ARL6IP1 RRM2B NHP2L1 PCDHGA5 OR2X1P LMO4 SERP2 SYT13 TPT1 EPB41L3 STK24 DLC1 MAP1A PFN2 HSP90AB1 MTRNR2L1 RP11-111M22.2 PPP3R1 NUAK1 OPRM1 COL24A1 TUBA1A BNIP3 GDI1 KCNH5 AP1S2 NCDN NDUFB2 CRIM1 OAZ1 LYNX1 SLC38A11 SSBP3 STMN1P1 RP11-147I3.1 STK39 RPS12 ELMO1 DSTN UQCRQ GRB14 DDN BRK1 VSTM2A STMN1 CERS6 PHYHIP PCDHGA10 SOX9 CHL1 COPS8 PNKD SPTBN1 WDR47 RPL38 BEND5 CLIP3 UCHL1 CSDE1 GPM6A PLCB1 NAPA TAGLN3 HS6ST3 ARPP19 MYBPC1 CCDC68 ATP5G1 RPL18A SMYD2 GOT2 TKT KITLG RPL37A ADCY10 TLE4 MAP2K4 ARF3 UQCRB CDC37 SCOC NUP37 ATP6AP1 POLR2L TOMM20 MT-ND5 MT-CO3 BCKDK RAP2A ETS2 SRD5A1 PKM C7ORF50 TENM3 C6ORF118 SERINC3 SH3BGRL2 MT-ND3 GAPDH SPDL1 CLTC MRPL47 RPL32 MTCH1 MPPED1 YWHAG ATP6V1F NDUFA2 JUN SNCA CLSTN1 GABARAPL1 CDH8 ATP2A2 PRKACB CCT5 ZNF174 YJEFN3 WBP2 ATP2B2 MT-ND2 UQCRC2 PPP2R1A SIRPA PNMA1 ITPR2 RPL17-C18ORF32 B2M RPL13A EPHB6 RPL17 MTRNR2L12 MTRNR2L8 RPS15 RPL21 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 CHN1 SNAP25 MT-ND3 MT-CO1 MT-CO2 MT-ND2 MT-CYB MTRNR2L1 OR6D1P OXR1 SYTL2 ITPR2 TMSB4X MTRNR2L12 MT-ATP6 PEBP1 OCIAD1 PSMD2 PIK3R1 SYT1 LMO4 ACTB NECAB1 PPIA MAP1B YWHAZ CALM2 USMG5 HSP90AA1 RAB3B ATP9A RNF11 TMOD2 BASP1 TUBA1B GABRA1 PPA1 KCNA2 PFDN1 EPB41L3 NRGN KIF21A PPP2R1A SARAF TOLLIP STXBP1 CKB TPT1 HSP90AB1 OAZ1 SCN2B CPE SKP1 NRCAM LRP1B OPA1 PCDHGA5 SERPINI1 HOPX MORF4L2 CDH13 RP11-111M22.2 RPL35 SPARCL1 NDUFB1 EIF4A2 ARFGAP2 MTRNR2L6 RFC3 GUK1 SOD1 ATP1B1 ELAVL2 STK39 STRAP PGAM1 MGST1 PRKAR1A SCN4B MAP2K1 CNTNAP5 QDPR SLC22A17 INPP5F GLRA3 NELL1 DNER EID1 SKAP2 PTPRN DSTN MTND1P23 IPCEF1 BEX2 DNAJC4 CHI3L1 PDE1C APLP1 CSDE1 COX4I1 ATP5B VSTM2A TUBB4B SYT11 AES SLC9A6 VSTM2L ZBTB18 CHL1 SSBP3 PLP1 NDUFA2 SNX3 ELOVL7 GABARAPL1 CYB5R3 CARTPT CADM3 DNAJC5 TESPA1 DCTN1 LINC00087 TSC22D1 ARPP19 NMNAT2 PFKFB4 FAIM2 NAA38 ELMO1 KIF1A SSTR1 TRPV2 SLC17A6 UQCRH CADPS2 PDGFRB COPG1 SUB1 TSC22D4 CCDC25 ATP5A1 SNRPN GPX4 NUDT21 KCTD12 KLC1 WBP2 SUMO1 TBR1 MT-ND1 OLFM2 GPR98 C18ORF32 MDH1 PRKCE TSPAN7 GDI1 EGFL7 BAI2 RPL37A AP1S1 CSRP1 MAP7D2 PHKG1 SLC35B1 RPL11 YWHAH PJA2 PCDH17 NAP1L3 CLU CLTA HS6ST3 ADD2 C14ORF132 PSAP GUCY1B3 MAP4 DPYSL2 COL12A1 ATP6V1B2 FARSA TMSB10 SCN1A ENOPH1 EGR1 KCNF1 STMN3 SPTBN1 GPM6A CTNND2 SLC6A17 UBA52 DCTN3 NDFIP2 RP11-382N13.1 NDUFB3 CLIP3 NFE2L1 RPS27A RPL26 C1ORF56 PMEPA1 TNNT2 SEMA4G RAB40B PKM PHLDB2 NOS2 PTK2B MBP STUB1 FAM3C VSNL1 PHYHIP NRN1 DKK3 RPL13A YWHAB ENC1 DYNLL1 RPS4X PPP1CB RTN3 CACNB1 PRKCB RPL31 ELAVL4 RAB2A BNIP3 GRIN2A JUN MPPED1 RP11-452D12.1 NDUFB8 CABP1 SCN3B NARS ARL6IP1 NEGR1 SEZ6 VAMP2 NEFL PRNP NPTN RHEB AAMDC CRYM APP CALM1 ITM2B MLLT11 ERH ANKRD18A ATP6V1E1 CDK14 HMGCS1 COL5A2 YWHAQ TMEM65 RORB RELN TCEAL2 HTR2A CEND1 NME1 PHPT1 AK5 EPDR1 NDUFA5 KRT17P6 ALDOA RP11-219A15.1 B2M SERF2 IDS RPS26 RPL21 ERBB3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 VSNL1 MT-CO2 MT-ND1 MT-ND4 GPM6A MT-ND3 SNAP25 TMA7 NECAB1 MT-ND2 SYTL2 RAB3B RP11-219A15.1 SLC12A5 MT-ATP6 MTRNR2L1 RPL37A TBC1D15 LPPR4 SYT1 C14ORF2 GDI1 UCHL1 CALM1 RTN3 DKK3 PPP3CA ATP2A2 COX7C PCDH8 CLU ANKRD20A11P RPS3A SLC30A3 RPL38 NELL2 EXTL2 PPP3R1 ARPP19 CDK5R1 NRCAM RTN4 ATP1A1 MTPN RPL41 RPL35 NR1I3 SEZ6 PGAM1 CLTC CLSTN1 VAMP1 TMEM230 NDRG4 STMN4 SERPINF1 MT3 TUBA1A RPS4X SYNPO RAB3A SYT11 SMAP2 CALM3 PSMC1 DMTN ID2 MTRNR2L6 CPLX2 C14ORF132 MTRNR2L12 SH3GL2 SLC1A2 HCN1 RPS26 YWHAG SEZ6L2 SYN1 IDS MGST3 ELAVL4 BEX1 NPTX1 ATP6AP2 ARPC5L SEZ6L PHYHIP LCN12 UBE2QL1 PGRMC1 QDPR EIF4A2 CDH13 TPD52 RPL31 CCK BRK1 CHN1 CRIP2 MRPL20 DHCR24 MT-CYB PRKCB RAB3C LAMP5 PRKCE RPS27A RRAGA NEGR1 ATP6V1C1 RPL11 TSC22D1 RHEB HHATL SYT4 TSPAN7 UQCRC1 REEP5 CAMKK2 MAPRE2 SNAP91 STMN3 SCN1A TOLLIP CISD1 FTH1 TMEM155 NCEH1 ACTB ETS2 LMO3 TMEM130 OLFM1 CAB39 PI4KA HDHD1 CYP1B1 TMSB10 STXBP1 SLITRK1 NPTXR SERINC1 DNAJC6 PDE1A DIRAS2 ITM2A PNMA1 PTMA GABRA1 PRNP GLRA3 GNB1 DNAJB6 PTGES3 ATP5J RPL23A CDK17 INSIG1 PTK2B STRAP MT-ND4L ZFAND5 WDR47 RPS6 SPARCL1 JUND OR6D1P NDUFAB1 SLC6A17 MYO1B REEP2 TUBB2B RPL10A ATP2B2 CDC42SE2 PCDHGA5 PRKACB WASF1 CADM2 EPB41L3 POLR3H EPHB6 LYNX1 CNTN1 CCDC115 GLO1 RPL7 NEFL PPP2CB MTATP6P1 USMG5 MARCH10 NUDT4 ATP6V0C HAPLN4 NGRN RPS15 RPL21 RP11-20I23.1 GABARAP NSF RPL36A PCDHA4 PCDHAC1 PCDHA10 PCDHA9 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B CALM2 NECAB1 RPL31 SNAP25 ENC1 MT-ND2 MT-ND4 NDRG4 TUBA1B PRNP SEPW1 CALM1 TMSB10 MT-CO3 NR1I3 SARAF RPL38 YWHAB RPL32 TUBD1 TMEM59L CALM3 MTRNR2L12 PPP3CA FBXL16 RPL23A RPL41 MT-CO1 SYNJ1 SYT1 MT-ATP6 MAP1B CFH MT-CYB COX6A1 PPP3R1 ATP1B1 RPL37A PPM1A BSCL2 TPI1 RAB40B TF C14ORF132 LMBR1 VEGFA ATP2A2 PRKCG TLE4 STMN3 NGEF UQCRC2 COL6A1 DDR2 GPR98 TOMM20 SCN1A GRIN2A PPP2R2B NPTX1 RAPGEF5 RPL17-C18ORF32 PSMD12 RPS4X MLF2 CTNND2 ATP5I SLC6A17 DCTN3 XX-CR54.1 MYEOV2 C1ORF56 SRP14 RAP2A MAPRE3 KCNAB3 NDUFB5 FER1L4 LMO4 HINT1 TBR1 CDS1 RAB4A ADAM23 SEMA3C HSPA4 GAPDHP33 GPM6A NPTN FKBP1A PHYHIPL TPT1 UBB STMN2 ATP6AP1 KLHDC3 FAM19A1 ATP5B TPPP NCEH1 CHN1 RPL26 ATP6V0E2 NHP2L1 PET100 CA11 SCD5 RTN1 RPL6 AAMDC MDH1 NPTX2 UCHL1 NCDN DCTN1 BRK1 TSPAN7 BNIP3 ZBBX SH3GL2 SMS PREPL RTN4 RPL17 NUAK1 RAP1GAP2 RAB3A FTL DKK3 NIPA1 MTATP6P1 BAALC APLP1 RPL11 TERF2IP SYT4 RTN3 DYNLRB1 ATP9A PPP1CB WDR47 AC073264.6 KLHL12 CDK5R1 TUBA4A SPOCK1 BIRC5 POLR2K SMIM13 UQCRB FAM127A STMN1 ENO2 RP11-111M22.2 BEX1 NDUFS5 LAMTOR5 CAB39 NDUFB1 GUCY1A3 MAP2K1 NRSN2 SLC24A2 RPS12 PGM2L1 SSTR2 COL24A1 SERPINI1 NDFIP2 TRIB2 UBE2E3 KCNAB2 MYRIP YWHAG RGS12 CHMP5 CISD1 YWHAH TMOD2 ETFB PRKACB BRICD5 PRKCB ATP6V0D1 ATP5E SLC9A6 COL5A3 LGALS1 TCEB1 TCEAL5 PKM RAB6A PPIA ANKRD20A11P SERINC3 RORB HSP90AB1 NUDT4 RNASEK-C17ORF49 SERF2 RPL7 ARFGAP2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-ND1 MT-CO3 MT-CO1 TMSB4X PDE1A SYT1 MT-ND3 CALM1 UQCRB TESPA1 TBC1D15 TSPYL1 TMSB10 SPARCL1 PSD3 MTRNR2L1 REEP2 RTN4 IDS MT-ND4 TERF2IP RPL23A SERINC3 COX7C CEND1 CDK5R1 RP11-219A15.1 RP11-111M22.2 RPL41 WASF1 FAT3 MAP1B GNAQ THY1 PKM OLFM1 NDUFB1 EPS15 MTRNR2L12 PRKCB ATP1B1 LMO4 HOPX GRM3 STMN1 SERPINF1 NAPB TOMM7 LMBRD2 PTMA MTATP6P1 NPTX2 NDFIP1 MT-ATP6 DCLK1 TUBA4A CNTN1 NDFIP2 C3ORF80 RGS12 PCDHA4 PEA15 SSBP3 NEUROD1 SLC39A10 USP5 NCEH1 SCN1A RHBDD2 EPB41L3 KCNK1 RPS27A SUMO1 TAGLN3 C14ORF132 ARPP19 SMIM13 HCN1 RGS4 GABRA1 ANO3 SLC25A5 GPM6A HNRNPH2 ECM1 IGFBP5 PVRL1 CDKN2D SYNGR1 TMX4 APP ACTB GLRA3 SCG2 TPD52 STMN2 VPS35 TUBB4A ELAVL4 NAT8L ARL6IP1 PCDHGA10 CHN1 TM2D3 SUMO2 HS6ST2 PPP1CB NAPA SRP9 UBC EFHD2 RAPGEF5 OXCT1 C1ORF115 ANKRD20A11P PRDX3 PCMT1 PSMC3 CADM3 NGEF SERPINE2 RASGRF2 PNKD OXR1 HMP19 C19ORF53 CHL1 OCIAD1 HNRNPA1P40 RAB3B SYTL2 ZNF385D ESCO2 MTRNR2L6 C11ORF31 RPL36A CYB5R3 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 SNAP25 CALM2 ITPR2 RPL37A LINC01296 LRRIQ1 CALM1 NAPB PRKACB DYNLL1 MAPK1 CNR1 PTCHD4 TBR1 TSPYL1 GRIN2A TOMM34 BEX1 SERPINE2 HOMER1 GDA ATP6V0B NDRG3 EPDR1 SYT1 FXYD6 COX7C TRHDE HS6ST3 TMEM70 TCEAL5 HSPA4 LIN9 SLC17A6 NEFL FAM84A ENO2 PPP2R1A GPM6A PNKD NOP10 NCDN LMO3 APLP2 PPP2R2C KIF5A GPR88 AZIN1 THY1 PEX5L SCOC LMBRD2 PCMT1 ENC1 PEBP1 PSMD12 NELL2 PPIA LYSMD2 SERPINI1 NRCAM ATP5J YWHAG TPI1 FOXQ1 EPHA6 CCT5 PLCB1 PKM MAPRE2 COX7A2L C1ORF115 YWHAB MT-ATP6 DGKG NGEF PPP3CA SLC39A10 RPL38 CHN1 HSPBP1 COPRS GPATCH4 EIF4A2 COX6A1 NELL1 BEX4 COX7A1 GAPDH CBLN4 CPLX3 IDS EPB41L3 TAGLN3 PDE1C NECAB1 RPS27A CFH RPL13A RAB6A RP11-219A15.1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN4 MT-CO1 RAB3B MT-CO3 NDFIP1 MT-ND4 CALM2 SNAP25 MAP1B CHL1 RPS27A PSD3 SCN1A GPM6A YWHAG PRNP MT-CO2 RPL37A SYT1 PLCB1 YWHAZ MT-ND1 MT-ND3 RTN1 MT-ND2 CADM2 GNB1 PRKACB OLFM1 TMA7 PIK3R1 MTRNR2L1 LANCL1 PGM2L1 MT-CYB SV2B PCDH19 SCN3B PDE1A ATP5B ATP1B1 PPP3R1 RP11-111M22.2 ADAM23 ACTB CLSTN1 MT-ATP6 STXBP1 ARL6IP5 NRCAM RPL36A UQCRB SLC22A17 LMO3 NEGR1 GABRA1 ANKRD20A11P RPL31 RPL32 CHN1 DNM3 YWHAB BIRC5 SERINC3 PRKCG CALN1 PDE1C DDAH1 NPTX1 ATP9A SEPW1 MT2A SAP18 SH3GL2 TMOD2 POMP TM2D3 CYFIP2 PELI3 BSG DNAJB6 COPG1 LINC01296 HTR2A NAPB SPTBN1 RPL13A NAT8L MTRNR2L6 HCN1 FAM3C NCALD CAMK2G PRKAR1B SYT11 UTRN GRIN2A TMX4 CAP2 LMO4 MTPN HMGCS1 WBP2 SERINC1 PPP3CA PRKAR1A GRINA THBS4 MBP OCIAD1 GNAQ MT-ND4L RPS28 UHMK1 HS6ST3 ATP2B2 TCEB2 QDPR GMFB RGS12 SNX10 LMBRD2 CNTN1 ARF3 PNMA2 RPS26 APLP1 NDUFB7 MDH1 UBE2N NUAK1 TOMM20 RAP2A DDN FLOT2 CA11 PREPL CFH DCTPP1 STMN2 NPTXR STMN4 FBXL16 THY1 BASP1 NECAB1 EPHB6 ZFAND5 EPB41L3 RPL26 EDIL3 SLC17A7 SCD5 AES MIR3916 KCNC3 APLP2 PRKCB IGSF21 GDI1 CTNND2 SERPINI1 EPHA6 OPA1 ITM2B ATP6V1F TPD52 CDC42SE2 TAGLN3 ARL8B COPS7A PPM1A MRPS21 MS4A8 TEX2 CLU DKK3 ARL6IP1 UCHL1 SNCA TUBA4A SEMA3C STMN1P1 CREG2 SLC39A10 C4ORF3 NDUFB2 RAB3C PFKP COL12A1 LAMP5 GORASP2 TBCA OLA1 DCTN1 CFL1 PJA2 PAK1 SYT4 BCAP31 FTH1 SPARCL1 COX6C RRS1 FAM84A YWHAQ RAB7A SLC1A2 WDR47 C16ORF13 NDUFS5 YBEY SLC12A5 ENC1 C14ORF132 APP ARPC5L STMN3 BAALC KCNAB2 TXLNB RTN3 CDH8 SLC25A4 ATP5H TMSB4X COX17 KRAS RP11-20I23.1 MTRNR2L8 ATP6V0C KLC1 RELN ALDOA NUDT4 MTRNR2L12 GTF2H2C_2 ATP6V1G2 AC244489.1 TBC1D15 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 PEBP1 CKB SCN1A ZNF385D SYT1 RTN4 RTN3 TOMM20 GPM6A EIF4A2 UBE2QL1 MT-CO3 CALM2 NGFRAP1 OLFM1 MT-CO2 RP11-111M22.2 RPL17-C18ORF32 SYTL2 RAB3B CDK17 FAM134A DYNLRB1 SOSTDC1 ATP1B1 HMGCS1 CHN1 MORF4L1 TRIM36 FASN CHL1 NAPB CACNG3 SERPINI1 CFH EDIL3 SKAP2 SUMO2 BCAS2 CREG2 TCEB1 MRPL37 AK5 NDFIP1 MT-ND3 ROBO2 CYFIP2 CX3CL1 RASGRF1 CSDE1 CPE PRKACB STUB1 CALM1 C11ORF31 TMSB10 PTPRS RPS28 TERF2IP MLLT11 DCTN1 PCDH8 CRIP2 CNTN1 LINC01296 MT-ND1 PTK2B ATP1A1 ENO2 EID1 GPR116 ADTRP BCAP31 KIFAP3 RPL37A NSDHL GDI1 TGOLN2 KCNA2 ATXN10 TPT1 CADM2 SYT3 PTPRZ1 TPI1 UHMK1 MT-ND2 MT-ND4 BASP1 IDS ARF5 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND1 SNAP25 MT-ND4 RAB3B MT-CO3 MT-CO2 MT-ND3 ENC1 RP11-219A15.1 MT-CO1 CHN1 RPL31 MT-CYB SYT1 RP11-111M22.2 SYTL2 ZNF385D IPCEF1 PPP3CA ATP1B1 HSP90AA1 RTN4 CALM2 BIRC5 STMN3 CLSTN1 IDS FAM19A1 RFC4 PGK1 ENO2 NEFL LMO4 DPYSL2 DYNLL1 CPE PSD3 SERINC1 CADM2 RAB3C GSKIP REEP5 ATP9A RTN3 TAF7L DYNC1I1 OPCML FAT3 MT-ATP6 JUN DMTN DCLK1 CLIP2 ANO3 RPS12 MT-ND2 YWHAG ITM2B IGFBP5 PACSIN1 CSDE1 PPIA PRKCB PEX5L SLC38A11 ATP5E CFH C1ORF52 ATP6V0E2 GABRA1 UCHL1 DNAJC21 TF ARL1 NUAK1 NCEH1 SYNPR INPP5F PKM RASGRF2 SYT11 PPP2CB ZNF503 PTPRT PDLIM5 UBE2V2 UBL5 HS6ST3 UBE2N COX7C AZIN1 MGST3 AP2B1 EHD3 PSAP ATP2B4 PEBP1 ZFAND5 PPM1A TMEM151A FTH1 RP11-1396O13.2 HNRNPH2 PTGES3 SELT TMSB4X CALM3 PFDN1 UQCRC1 ATP1A1 VSTM2L GRIN2A RPL38 YAF2 TEFM FAM19A2 HOPX NCALD TUBA1B MAP1B UHMK1 TUBB4A NEUROD2 SPON1 WFS1 SMIM13 FGF12 SLC9A6 NCAM2 PPA1 GPM6A PTK2B PCMT1 ITM2C RGS4 PPP2R1A GDA ANKRD20A11P KLC1 DSTN CHL1 PAK1 SLITRK1 KCNK1 SUB1 GHITM LMO3 RAB7A PRNP SPTBN1 CAP2 MORF4L2 MAST3 MT-ND5 PDP1 UQCRC2 NPTX2 TMTC1 ZNF365 FASN CLU IQSEC1 PLCB1 SERINC3 PPP2R2C SYT3 RELN TGOLN2 ARHGAP29 ATP6V1B2 SEC61G CHMP4B ARL4C ZFHX4 APLP2 PCDHA10 THY1 RAP2A COX4I1 FAM84A LMBR1 SCN4B HSP90AB1 GNG2 RPL13 VSNL1 FXYD6 PRKACB YWHAH COX7B NDUFA13 BAI2 SCN1A CYP1B1 CDC37 PPP2CA RAB2A CACNB1 WDR78 THSD7A PPP1CB MED10 WASF1 RPL8 SNAP91 TMX4 VPS35 DPP6 NDRG4 PSMC3 RBX1 ITPR2 NECAB1 YWHAB BCAS2 CNGB1 SYT4 CDK5R1 PSMA7 SYNJ1 PTPRS RHBDD2 POLR2J SCOC MT-ND4L PSMD2 ITFG1 RP11-529H22.1 NDUFS5 GUCY1B3 MYL6B NGFRAP1 OPA1 TBCA CRIP2 RAP1GAP2 VAMP2 SNX3 TKT FAM219A UQCRB SYN1 RPL37A MAPK1 PNMA2 C1ORF115 SGK223 CAB39 NREP BEX1 NDFIP1 VDAC1 EFR3A DDAH1 MTATP6P1 LDOC1L CCK SUMO2 KCNAB2 SLC38A1 ARHGAP35 CREG2 BTBD10 MRFAP1 RPL17 SERF2 RPL41 RPL21 RP11-20I23.1 RPL17-C18ORF32 ARF5 SKP1 ATP6V0C RPL36A AC244489.1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO3 MT-CO1 MTRNR2L1 NDFIP1 GPM6A MT-ND3 MT-ND4 RTN4 CALM2 PSD3 NECAB1 RTN3 EPB41L3 CHN1 MT-CO2 SV2B MTRNR2L12 PCDH17 CALM1 RAB3B SYTL2 ZNF385D TPI1 IPCEF1 APP MT-ND2 UQCRB NEGR1 ATP2B4 MT-ND1 PDP1 AP2M1 ITFG1 ARPP19 PRKACB MAP1B STXBP1 ARF1 VSNL1 KIF21A TESPA1 RPL38 CLSTN1 ETFB PRNP MTRNR2L8 APLP2 NGFRAP1 COX6C MT-CYB PREPL NFIA EIF4A2 RP11-219A15.1 LMO3 DMTN DPP6 ATP5J SLC30A3 OCIAD1 PEA15 ARF5 DYNLL2 ARL6IP1 NCDN PGRMC1 TCEAL5 KLF10 ACTR1A RPH3A CLU COX6B1 SYNJ1 MTRNR2L6 WASF1 RPL6 LZTS1 HTR2A TMEM14A SYT1 YWHAH LMBRD2 TAGLN3 COX4I1 MBP CDK5R1 PRKCB MCHR2 EIF1 UBQLN2 GAPDH CHL1 GRINA RAB11A VAMP2 REEP5 MLLT11 LMO4 CTBP1 MTPN ATP1B1 MAPRE2 TMX4 ENO2 RPL8 YWHAG RPL41 MMD SLC8A2 PSAP SNX10 GPRC5B EFR3A GNB1 POLR2I APLP1 GRIN2A DCLK1 RAB4A SUMO2 ADORA1 VSTM2A SUMO1 MAOB HMGCS1 ATP5I GNG2 PKM CADPS2 CYFIP2 RPL31 STXBP6 RLIM RPS28 SYN2 TSPYL4 ARHGAP35 RORB IQSEC1 SYT11 RAD23B RPL17-C18ORF32 TF HSP90AA1 SPOCK2 RPL7 CXXC4 RAB6A NEFL RAB37 COX7C ARL8B PPP2R2B SCN1B KCNC2 TOMM7 SCG2 SLC17A7 MAPK1 SERINC3 TLE4 SARAF HSP90AB1 ARL6IP5 PHYHIP HS6ST3 FAM3C MORF4L1 NEFM ATP6V1A NNAT C4ORF3 ID2 PET100 ITM2B RAB1A TMTC1 CD99L2 RPL17 CLTB NUAK1 PAM CKB UBA1 SLC12A5 SCN3B SCN4B RAB3A SRP14 RAB11FIP5 PPP3R1 RPL37A SCAMP5 TAF7L ATP6V1F ACLY ATP1A1 KCNK1 SMIM13 PFN2 RPL36A ATP6V0C IDS RP11-20I23.1 RPL3 RPL13A PAK1 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ATP6 MT-ND2 MT-ND4 RPL37A MT-CO3 MTRNR2L12 MT-ND1 FAIM2 PLEKHG1 NECAB1 LMO4 SYTL2 TBC1D15 DNAJC21 SNAP25 ADAM23 RTN1 APLP1 NRGN BTBD1 UQCRQ PIP5K1B ATP5E COX6B1 MYO1B SMYD2 APP TMEM59L SYT13 DPYSL2 CAPZA2 RP11-664H7.2 FXYD6 BRK1 SMAP2 KIF3C NPTX1 RAB3A SEZ6L2 NEFL RNF181 ARPP19 HS3ST5 GRIN2A EID1 HOMER1 RP11-111M22.2 RPS15 CEND1 NAPB CDK5R1 SLC8A2 MTRNR2L8 CCDC25 HK1 SLC22A17 CREG2 SLC39A10 C1QBP SPOCK1 C11ORF31 ONECUT2 PGRMC1 ATP2B2 ENO2 ZFAND5 GAP43 RPL32 NEGR1 RTN3 SCN1A SYT5 RGS4 ACTG1 GABRA1 NDUFB10 HSP90AA1 SDCBP INPP5F OR6D1P MTATP6P1 HSPB1 GPCPD1 ARL4C NCAM2 SKP1 PSD3 AC244489.1 GPATCH4 SYT1 VPS35 ANKRD20A11P ARL8A VAMP2 SDHAF1 EPHA6 RPS2 RP11-219A15.1 IDS HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 YWHAG RTN4 PSD3 ENC1 ARFGAP2 ANKRD20A11P MAP1B ATP6AP2 OLFM1 MT-ND4 PNKD HOPX PRKCB DCTN1 SYNGR1 MT-CO3 RAB3B PPP1R7 BAI2 GLIS3 RPL35 MT-ND1 MTCH1 SYT11 SHARPIN HAPLN4 SPTBN1 RP11-219A15.1 FKBP1A ATP6V0B UQCRH ARL6IP1 SNRPN DYNLL1 TMEM130 SERPINE2 IDI1 SYT13 RTN3 GNAQ PPP3CA PTMA PSAP KLHDC3 TSPYL1 BASP1 ATP9A SLC17A7 ARF1 FILIP1L PPP2CB BEX4 MAGED1 MT-ND3 KIF21A APLP1 GRINA EID1 LMO4 FXYD6 PAFAH1B2 C11ORF31 PFKP GABRA1 PREPL SLC9A6 LMO3 CKB NECAB1 HTR3A ELMO1 CTNNB1 MT-CO2 TMEM59L PTPRT HAMP ATXN10 COL5A3 RORB TERF2IP ATP5A1 VDAC3 SRP14 PNMAL2 CPLX2 TRABD2A RPL37A VSTM2A SYN1 BEX1 COPS8 STMN3 AK5 UBQLN2 CHN1 FABP3 PHYHIP RAB7A IDS NDUFA4 TMTC1 SCN3B SLC35B1 CADM3 FAM19A2 TMEM65 PTK2B HSP90AA1 HNRNPH2 ITM2B EIF4A2 UCHL1 TBC1D15 TUBB GTF2H2C_2 SYTL2 DNAJC21 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-ND4 SYT1 SNAP25 MT-ATP6 MT-ND1 RTN4 ACTB NRGN FXYD6 MT-ND3 GPM6A PPP3CA DCLK1 MT-CYB MT-ND2 RP11-111M22.2 HNRNPA1P40 CFH OR6D1P FBXL15 CHGB BAD RAB1A SNN SNRPN CHN1 TESPA1 RAB3B ROBO2 SERINC3 PPP3R1 PTK2B ACOT7 STXBP1 PDE1A CNTN1 NAP1L3 TMTC4 MMD DAB2 MTATP6P1 TUBA1B BLNK CLTA MRPL51 GUCY1B3 WSB2 NCDN ZNF208 CALM2 RAB7A SCN3B NRCAM CALM1 TSPYL1 ETFB CCT5 ENC1 TPPP IQSEC1 GPCPD1 NAT8L MFN2 PPP3CB CTXN3 MTRNR2L1 PRKAR1B SLC17A7 FAT3 IDS TMEM164 ITM2B HN1 NECAB1 CLIP3 IDH3A SEPW1 CADM2 NDRG4 SSBP3 RGS4 SIRPA LMO4 RTN3 BEX5 KLHDC3 NGFRAP1 ATP1A3 C14ORF132 NCAM2 TUBD1 YWHAZ CHAC2 FBXL16 ATP2A2 CFL2 PPP2CA PCDH8 NAPB RIT2 MTRNR2L12 NDUFA12 MTRNR2L6 AC244489.1 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 CALM1 IDS PPP3CA SNAP25 RTN4 MT-CO1 PRNP LMO3 SYTL2 CCDC154 CREG2 GNAQ MT-CO2 PTK2B PREPL GPM6A PJA2 PDE1A RP11-111M22.2 PRKACB SELT RPL17 MT-ND2 HSP90AA1 SLC8A2 CHN1 PCDH8 RPL31 HOMER1 HNRNPA1P40 UBL4A KIFAP3 ENSA LDHB MT-ND4 FAM219A SARAF CHGB IPCEF1 SEPW1 DYNLL1 VAMP2 COL24A1 MAP2K4 NAPB PRKCB SLC22A17 TENM3 THSD7A YWHAH SPOCK2 SLC17A7 MAPK1 GNB1 STMN3 NPTXR TUBA4A ANAPC11 RGS12 FAIM2 MT-ND1 YWHAB PIK3R1 MAP2K1 NRCAM DMTN GABRA1 BDNF CAMKK2 YWHAQ CLTC PSD3 FAM19A1 ATPAF1 KCNAB2 NDUFS5 ETS2 SPCS2 RAB27B SLC1A2 CKB ELMO1 CACNG3 RPS27A FTL ATP6V0E2 ATP2B2 NDFIP2 TMEM59L EFNB1 MTRNR2L1 SCN3B CORO2B MTRNR2L12 CLIP3 GSK3A C11ORF84 PRDX1 PCP4 RASGRF2 CALM3 C1ORF95 COX6A1 RANBP1 PCDHGA5 TOMM20 SLC39A10 WASL FBXW11 BSN PRKAR1A OCIAD1 SSTR2 MLLT11 INPP5F GAP43 ENC1 RPL35 JUND YWHAZ RFK CPE STXBP1 C14ORF2 HS6ST3 HS3ST4 SERINC1 ITM2B ZBTB18 NARS PPP2R2C MPPED1 KIF21A HMGCR ACTB KCNA1 CADM2 HSP90AB1 PEBP1 RPL37A CTXN3 MAP1B PET100 MT-CYB EIF1AX ARF3 PRIM1 MAP1A MT-ND4L GAPDH DCLK1 DPP6 NR1I3 RPL41 NGRN PPP3R1 PCDHA9 PCDHA10 PCDHA4 PCDHAC1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B ZNF385D SYTL2 TBC1D15 ARL6IP1 PPIH PREPL NDUFA4 MT-CYB TESPA1 RPL36A RPL38 RPL37A GPM6A RPL26 SNAP25 IDS BIRC5 NR1I3 HOMER1 FAM219A TSPAN4 DPYSL2 PPM1A TEX2 PIK3R1 GADD45GIP1 DCLK1 RPL11 ATP6AP2 ATP5J CD99L2 GPR98 MT-ND4 BCAP31 CADPS2 RAP2A MYO1B ATP5E PINK1 PCDH8 COL4A3 ATP6V1C1 BEX2 SLC22A17 SPTBN1 TPT1 MAP7D1 MRPS7 YWHAQ SERINC3 PPP2R1A PCDH17 TOMM7 PPIA CALM3 LMO3 CADM3 RPL12 ATP1B1 PEX5L CALM1 OPN3 WASF1 DSTN RPL35 NRCAM NARS SYT4 ATP5O ACTG1 ATP5I NDUFB1 FAM84A COX7C YWHAB SLC8A2 NEFL RP11-111M22.2 VPS35 COX4I1 TGOLN2 DNAJC6 RPS28 PRKAR1A CHN1 NDUFA8 SCN1A CCT5 WDR47 CNTN1 C3ORF80 PSD3 SV2C GNG2 RTN1 ARPP19 GDI1 HDLBP UCHL1 RPL32 RPL31 LPPR4 SMIM12 RPL21 BMP8A RAB6B NDUFA13 NSF RPL18A HNRNPA1P40 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND2 MT-CO2 CHN1 MT-CO1 SNAP25 RTN4 RPL15 HOPX TBC1D15 CFH TUBD1 CALM3 SCD5 SCOC MORF4L2 DKK3 PFN2 RP11-111M22.2 RPL32 PGK1 SYT1 RPL37A ACTB SERPINE2 DDAH1 NPTX1 DPP6 SERINC1 TMSB10 NDFIP1 RAB6A NAP1L2 SLC12A5 EIF4A2 STXBP1 SYTL2 COX6C CISD1 MAPK8IP2 TERF2IP MFSD6 RPL31 CLIP3 TCEB2 TKT LCN12 CYCS ATP5E CADM2 KIF21A GAP43 CPE MORF4L1 RAB1A NECAB1 RPL12 KIFAP3 CHRDL1 PSD3 SIRPA GNG2 FAIM2 GRIN3A PIK3R1 MT-ND3 GRIN2A MTCH1 CHP1 SPTBN1 DHCR24 ROBO2 QKI MTRNR2L1 THYN1 PRNP PTK2B H2AFZ ANGPT2 SNAP91 AK5 CMAS CBX6 APBB1 CNGB1 MAP1A RASSF8 MZT1 PNKD RHEB DIRAS1 OLFM1 ATP1B1 TSPYL1 OXR1 TP53I11 YAP1 CTNNB1 GPM6A TOMM20 PTMA CDC42SE2 PET100 NAP1L5 ARL8B PNMA1 ISCU NDUFA11 COX7A2 RTN3 CDH22 ITM2B SLC38A11 TBR1 SYT4 RTN1 CREG2 WBSCR17 WASF1 CHADL LAMP5 MT3 IDS REEP5 MSMO1 MT-CYB UBE2E3 ATP5J2 ACTR10 NCDN RPL36A MAP7D1 FAT3 ARL6IP1 PRKCE MAP2K1 APP ATP1A1 AP2B1 PI4KA ATP4A ARHGAP6 ZBTB18 UROD ADD2 CACNB1 PREPL SERINC3 RPL17 LZTS1 PEBP1 PRKCB UQCRB PPP2R2C SLITRK1 SLC25A6 ATXN10 PTCHD4 IFT52 RAB5C CAB39 SYNPO BSG TSPAN7 TMEM65 APLP1 EDIL3 TPI1 RPS12 TSC22D1 ENO2 MAST3 TUBA4A PSAP WFS1 RPL6 MTRNR2L6 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 CALM1 RAB3B MT-ND4 MT-ND1 MTRNR2L1 RP11-111M22.2 TLE4 MT-ND3 MT-CYB OXR1 NEUROD2 HNRNPA1P40 RPS3A ATP9A CLTC NAPA RPS15 SCN2B WASF1 DKK3 GLIS3 UHMK1 CCK CABP1 AES SEZ6L2 SERINC1 PCDHGA5 CDC37 PRDX2 GABRA1 AP1S1 ACTB CLSTN2 NAPB TERF2IP SLC39A10 RPL3 TMEM59L RTN4 BRICD5 CCT5 SNX3 FBXL16 HSP90AB1 CBX6 MIR6723 QKI TUBA1B SPARCL1 SYN1 ITFG1 BRK1 NECAB1 RPL36A PPTC7 COX4I1 RTN1 ARL1 GRIN1 BAD SSTR2 GRIN2A IGSF21 TKT CSDE1 VDAC2 FOXP2 YWHAH NRCAM CTBP1 PRKCE CACNA1H KIFAP3 BEX5 MAP1B NRGN CNRIP1 SYT1 PRKCB DNAJC6 COL5A3 PLEKHD1 ALDOA MTRNR2L6 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RTN4 MT-CO1 CALM1 CALM2 CHN1 ZNF385D RAB3B ANKRD20A11P NELL2 DPP6 CNTN1 PRKCB RPL32 HS6ST3 ENC1 FAM84A NUAK1 YWHAG SLC25A4 PCDH19 SLC39A10 MT-ND4 RPS15 OAZ1 MT-ND1 BASP1 GABRA1 SERINC1 RPL37A MT-ATP6 SEZ6L ADCYAP1 SNX3 TRIM37 ANO3 YWHAB SERF2 ATP6V1A GDI1 ENO1 UQCRC2 YWHAZ CDC42SE2 RPL8 CADM2 OLFM1 NPTX1 SLC12A5 TLE4 PPP2R1A HSP90AA1 YAF2 MT-ND2 HEY1 CDK5R1 ATP2B4 SRD5A1 CBX6 PCDHGA10 DSTN GUCY1A3 UHMK1 HMGCR SLC22A17 TMX4 EIF4A2 NCEH1 HSPA4 CABP1 WASL GGTLC2 GNAQ CDH8 NCAM2 CLU PKM SYT1 PGM2L1 SPARCL1 TP53I11 GNG3 UCHL1 VSTM2A PI4KA LAMP5 PRKACB VSTM2L ATP6V0E2 ERBB3 DCLK3 NHP2 RPL13 RHBDD2 KIF21A DYNC1I1 SH3BGRL3 SYT17 PACSIN1 ARL8B PGRMC1 MAPK1 RAB27B MT-CO3 COX4I1 TOMM7 CREG2 JUND APLP2 MT-ND3 ONECUT2 ATP5O CTBP1 PCMT1 PPARGC1A LMBRD2 SGK223 TSPYL4 IGSF21 SNX10 TMEM59L RPL35 PIK3R1 GNG2 GTF2H2C_2 COX7B LMO3 TESPA1 PRPS1 MRPS21 MTCH1 DCLK1 TMEM130 NRCAM EDIL3 SLC30A3 TSPAN7 CKB PLEKHD1 MTATP6P1 PRNP COX14 REPS2 SPTBN1 CPLX2 TUBA1B SCN3B CPE RTN3 ZNF804A PPP3CA CYP1B1 NDUFC2 MT-CO2 SERPINE2 NGEF CHL1 C19ORF53 TMA7 RAB3A ZMAT2 STXBP1 DRAP1 RPL23A TMSB4X GMFB RAPGEF5 NEGR1 ZBTB18 EXTL2 SSBP3 POMP IDS RPL3 GABARAP NSF RPL36A RPL21 ATP6V1G2 RPS28 RP11-219A15.1 AC244489.1 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SYTL2 SNAP25 RTN1 EIF4A2 CHN1 RPL37A ANO3 PRKACB SYT1 MT-CO2 SNRPN CALM1 MT-CO3 MT-CO1 RPL21 ENC1 RPL12 HINT1 PSD3 UBC MT-ATP6 CALM2 PRNP GRIN2A MT-ND3 RP11-219A15.1 HMGCR PRUNE2 CLTC RP11-111M22.2 PRKCB TUBA1B AP2M1 TM2D3 OLFM1 SPARCL1 NEFM AES USMG5 RTN3 TCEB1 DCTN1 RPL6 ARPP19 MAP1B SYN2 RTN4 SPTBN1 VDAC1 GABRA1 PIK3R1 RPL26 APP MT-ND1 CCDC124 PCMT1 GNAQ NRCAM RPL41 GPCPD1 YWHAB YWHAH RPL17-C18ORF32 COX7C LMO4 HSP90AB1 STXBP1 NELL2 OR6D1P MORF4L1 SYT13 OAZ1 BSG MT-ND4 BIRC5 TMEM130 ATP2B2 PPP1CB SUMO1 DDAH1 PNMA2 CCK TOMM7 EDF1 NCEH1 KCNC2 TRAPPC1 PNMA1 MOBP DMTN ATP5A1 TCEB2 KCNV1 PCSK1 ONECUT2 ELMO1 HAPLN4 UQCRQ RHOB PDE1C GRM3 CPLX2 NCDN GABARAPL1 FTL PGK1 HCN1 RPS26 BEX4 SCN1A FAM19A2 HSPB3 SERINC3 ZBTB18 NAPB CBLN4 HOMER1 BEX5 SERP2 UCHL1 KITLG CAPZA2 ADAM23 ESYT1 REEP5 WBP11 RPL8 FAM3C SLC12A5 SMAP2 MAGED1 RORB TMSB4X MRPL47 AP3S1 ITM2B LAMTOR5 PDP1 NAP1L3 HMP19 GSK3A DPY19L1 KLC1 PEX5L NUAK1 RPL32 ATP9A CREG2 LIN7B SLC9A1 LMBRD2 C14ORF132 CCDC69 MT-ND5 PTPRN CABP1 FIBP WASF1 TBCB NGEF PREPL PCDH19 USP5 AK5 PSMB5 APLP1 TEFM HDLBP CADM2 DNAJA1 SLC17A6 SLC24A2 LMO3 DRAP1 RCAN2 TPT1 GDI1 RPS4X GABPB1 PSAP TPGS2 UBA1 SLC38A1 EFCAB10 BNIP3 SAP18 ACP1 FOXQ1 SERPINE2 EFR3A ZNF703 NGFRAP1 SV2B NAPA RAB4A ZNF365 CMAS SULT4A1 RPL38 M1AP OPN3 POLR2K NDUFB8 EPS15 BEND4 ARL4C SELT SAMM50 IDS SNX10 FAT3 TMSB10 NPTXR BASP1 YWHAZ MTRNR2L12 CLSTN1 MAPK1 HSPA4 VAMP2 BEX2 RPL36A HRASLS5 TSPYL1 RGS4 EIF1B ARF5 TCEA2 ATP1A1 COX6C NDUFA5 TMEM14A CDH13 SEPW1 TMTC1 KIF1A STMN2 UQCRB KIF21A RAB27B STMN4 SLC7A8 TBCA RPL31 RASGRF2 PPP3CA TNNT2 HOPX ADCYAP1 C14ORF2 NPTX1 RPS10 RPL18A RP11-20I23.1 NGRN RPL3 ATP6V0C AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 NR1I3 ITPR2 AP1S1 PRKCB RTN4 TMSB4X RPL23A CDK5R1 ATP2A2 CALM1 PEBP1 MAP1B UQCRH SNAP91 BCKDHB SERPINE2 PRKACB YWHAG PNMA2 TF PDP1 MYEOV2 ARL4C RPS12 PCDH8 VDAC2 GPR98 CLU PREPL MT-ND4 PAFAH1B2 PTMA GUCY1B3 CNTNAP5 TSPYL1 NUAK1 PFN2 GRIN2A KCNAB2 STXBP1 PIK3R1 EIF1AX FAIM2 TBCA PSAP SUMO2 ENPP7P8 ALG3 TSPAN7 TCEB1 SCML2 SH3GL2 SIRPA GYG1 HS6ST3 APLF CALM3 SLC17A7 CA10 OPCML RPL37A ENO2 REEP2 CABP1 NECAB1 IDH3A RPL26 POLR2J SDCBP ATP9A SLC12A5 ZFAND5 C3ORF80 RGS12 SNAP25 GDI1 PTK2B EIF4A2 MAP2K4 OPN3 THY1 UQCRC2 TOMM7 EID1 KCNV1 SPOCK2 NDFIP1 CTNND2 ZNF804A CIAPIN1 COPS8 SKP1 ACTB CETN2 VDAC3 MAP7D2 SLC8A2 RPL31 NDUFS5 DPP6 HLA-DQB1 DPY30 ARFGAP2 PET100 SERF2 RP11-20I23.1 ATP6V0C RPS26 ATP1A1 AC244489.1 RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL35 RPL37A EPB41L3 CALM2 MTRNR2L1 MT-CO3 NUDT21 TMEM179B YWHAG MT-ND4 SNAP25 CHN1 RPL31 MAP1B MT-CYB MT-CO1 HEY1 TMEM258 KIF21A ARL6IP1 PFKP SYT1 CADM2 PLP1 NEGR1 ACTR10 NECAB1 UCHL1 RTN4 FGF12 NCAM2 ENC1 TPT1 SYNPO RAB3C SYT11 PDE1A RPL32 AP2M1 RFK ATP5E MTRNR2L12 RP11-111M22.2 TSPYL1 ANKRD18A PFDN1 PPP3CB HNRNPH2 GOT1 SARAF SCN1A MAPK1 RAB3IP ALDH5A1 C14ORF2 SPARCL1 MOBP RAP2A UQCRB COX7A1 NDFIP1 MAP4 NCEH1 EPS15 IFI6 RHOB CDC42SE2 HSP90AA1 REPS2 RPL15 GAP43 NRCAM SEZ6L GPCPD1 CYP1B1 MT-CO2 SLC39A10 TLN2 CDK17 PTGES3 GPM6A SLC30A3 OPCML PPP1CB ENO2 SLC7A8 OCIAD1 RPS12 LMBRD2 NPTN CADPS2 PRKCE TAF7L PLD3 SLC38A11 GRIN2A MTCH1 RAB3B SYTL2 ZNF385D RPL36A RPL3 MTRNR2L6 HNRNPA1P40 KLC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 MT-CO1 MT-ND3 MT-ND2 MT-ND4 MT-ATP6 MT-CO2 MT-ND1 SNAP25 SYTL2 MT-CYB CALM1 RAB3B CALM2 MT-CO3 PIK3R1 PHYHIP VSNL1 SERINC1 LMO3 DKK3 THY1 RTN3 SPARCL1 NPTX1 PPP3CA RP11-111M22.2 OR6D1P SCN3B RAB40B SNRPN RTN4 NDFIP2 MTATP6P1 MLF2 CBX6 GDI1 YWHAB PPP1CB KITLG VSTM2A HSP90AA1 BEX1 NCAM2 ENC1 TESPA1 ZNF804A TSPYL1 MYEOV2 UCHL1 NECAB1 CCK PRNP WBP2 ARPP19 PEA15 PMEPA1 GDA CNRIP1 PRKAR1B HSP90AB1 NEUROD1 SULT4A1 MAPK1 SCN1A PRKCB SLC39A10 RP11-219A15.1 ATP1A1 NR1I3 NPTN NRCAM GLRA3 HCN1 OPCML PEBP1 PAFAH1B2 HOPX TPRG1L NAP1L3 PPP2CA PPP3CB OAZ1 ARL6IP5 UQCRC2 LZTS1 SEZ6L2 MT-ND5 FTL STK39 RPL6 KCNK1 CLU CNP SEZ6L KCNH5 SELT CAP2 CDH8 SEPW1 TOMM20 ZBTB18 NUAK1 PNMA2 FAM219A LAMA2 INPP5F MTRNR2L1 CADM3 C1QBP RAPGEF5 ASAP1 RAB11A MFSD6 PRDM8 DPYSL2 VPS35 MAP1B TERF2IP APP GPM6A RPS26 PLCB1 OPA1 GUCY1B3 NDUFA2 C16ORF13 FILIP1L PFDN1 OLFM1 SARAF ABCA8 GRIN2A CIAPIN1 KCNMB4 GLIS3 TM2D3 TSPYL4 POLR2M SERPINI1 PJA2 PCDH17 RAB6B SYNPO ZNF365 FTH1 GUCY1A3 GRB14 PCBP1 UQCR11 KCNC2 TUBA1B SYT4 YWHAH NXPH2 ATP2B2 SYN2 PCDHB4 RTN4R RAP2A PKM NEUROD6 EIF4A2 TMEM59L WASF1 CNTNAP5 SYNJ1 EPHA6 RAB2A FKBP1A ACTG1 PPP2R1A MEGF10 PREPL ATP2B4 BSN NEFM SYT1 COX6B1 EHD3 ENO2 FAM149B1 ZMAT2 PGM2L1 IPCEF1 SNAP91 SYT11 NDRG2 PPP3R1 CKB TLE4 NDUFV1 BAALC LMBRD2 FAM127A SPTBN1 IQSEC1 PEX5L TMSB10 PRKCE ARFGAP2 FGF12 CRIP2 PLD3 FAM19A1 LMO4 DCLK1 PGAM1 RHBDD2 RABAC1 TCEAL7 BASP1 PTK2B PSD3 FBXW11 TRIM36 PTPRT ANXA7 FAIM2 RTN1 SUMO3 SCN1B MTG1 TMOD2 CHL1 ATP1B1 SLC9A6 CAMK4 ATP6AP2 CREG2 RPL32 FIGN MDH1 ANGPT2 SLC35B1 FLOT2 BEX4 MRPS21 MORF4L1 MBP GPR98 MTRNR2L6 NSF NGRN SERF2 AC244489.1 MIF PCDHGA10 PCDHGA5 PCDHGA6 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 CADM2 RP11-219A15.1 THSD7A CHN1 DNAJC21 SYTL2 RAB3B PPP3CA ETFB PIK3R1 ENO2 ENC1 ATOH8 MMD GLRA3 CLTC ONECUT2 OXR1 NELL2 RPL31 RTN4 NRCAM SV2B RPL38 NPTX1 SH3BGRL2 BANF1 ZFHX4 PRKCE PRKCB NAPA POMP ARL8A VDAC3 MTRNR2L12 SARAF PRKACB NECAB1 GAP43 PTK2B MT-ND4 ANO3 NPTXR RAB3IP PDP1 CLU SNRPN SPARCL1 PLCB1 FAM19A1 AP1S1 RTN3 MAGED1 SNX10 SELT RPL23A TCEB2 CAMKK2 TUBA4A SCN3B LRRIQ1 TBR1 FKBP1A LINC01296 GPM6A PREPL GPR132 UQCRB FAM219A CDK17 FBXW11 CDH13 CTBP1 UBA1 RPS4X PDE1A UBE2V2 BIRC5 HSPA8 CKB GAPDH TCEAL7 BHLHE40 CEND1 CLSTN2 KLC1 CACNB1 OLFM1 RP11-111M22.2 TAGLN3 ELMO1 ITM2B OCIAD1 HOMER1 AK5 PLD3 RPL36A RAB7A ATRN ZNF804A PSMA7 SNX3 LMO4 EPS15 SKAP2 SYT1 SYNPO GSTP1 GABARAPL2 MAP4 SSTR2 POU3F1 CALM3 RPS28 DDN FIBP SRP9 VAPB INSIG1 CLPTM1 KLHDC3 CREG2 TESPA1 DNER UTRN GNG2 TMEM59L SOD1 PPM1A ARHGAP35 LPPR4 MTRNR2L8 COX7A1 DKK3 SLC12A5 GLUL RPL35 GPCPD1 CALM2 LAMP5 NUDT21 SERF2 NGRN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 RP11-111M22.2 PPP3CA NECAB1 MT-CO1 SYTL2 FTH1 MT-CYB ATP1B1 MAP1B CALM2 GRIN1 UCHL1 SYT1 KLC1 YWHAG TOMM20 MT-ATP6 PTPRN MT-ND2 PHYHIP LINC01296 AK5 RPS28 GHITM GRIN2A UROS CHN1 CALM1 ATP6V1B2 COX4I1 RELL2 ANKRD30A EPHB6 RTN3 CREG2 RAB2A MAP1A PCSK1 REEP5 NAPB ACTB CLU TOLLIP GAP43 TMEM160 UHMK1 ELAVL4 MYL6B SOX4 RXFP1 SCAMP5 GABRA1 CEND1 ATP5A1 OPA1 FTL EIF1 PSD3 COL5A2 LMO4 SKP1 SYT4 STMN2 SCN3B CCDC85B MTRNR2L1 BASP1 CKB CCK PGM2L1 AHNAK2 NELL2 RPS27A PIK3R1 HOPX TLN2 RPL18A RTN1 TPT1 RPL13A CDK5R1 DAB2 AC244489.1 STMN3 HNRNPA1P40 ARFGAP2 IDS BIRC5 NR1I3 LYNX1 THY1 RLIM TESPA1 ANP32C TUBD1 CCDC115 VAMP2 ITFG1 TM6SF1 COX6A1 ATXN10 TSC22D1 HSP90AA1 RPL32 TMSB10 ZBBX MT-CO3 PSAP LAMA3 FBXL15 RPL26 SCN2B EXTL2 EPB41L3 VSTM2L ZMAT2 RFC4 C12ORF57 FAM84A PPP2CB VDAC2 MAP1LC3A UQCRB TUBA1B DNAJB6 ENO2 JUND SARAF ENO1 CCDC183 THYN1 MYEOV2 SCOC TRHDE LAGE3 GAPDH VWF SCN1A MDH1 DNM3 DKK3 ATP1A1 FASN MAPRE3 MTRNR2L6 PPP2R2B POLR2K TCEB2 MRPL33 RHBDD2 BRICD5 MT3 CTNND2 ADAM23 SYT13 KCNK1 PGK1 TSPYL1 PPP3CB EFR3A GABARAPL1 YWHAZ PPDPF RNF11 NDUFB7 RHEB ACOT7 CX3CL1 SNX17 SCN1B NDUFAF2 PTK2B STAG3 SPRYD3 PEBP1 PRIM1 SLC30A3 CPE MORF4L2 ATP6V1C1 CPNE8 RAPGEF5 CLTC PDP1 ARPP19 MT-CO2 LAMTOR5 OLFM2 OAZ1 IDI1 RPL26L1 PVRL1 SOD1 STMN4 OPN3 PAM WDR47 ATP5E RPS12 C19ORF10 COX7C ADD2 TPGS2 MTPN STX1B NEFL YWHAB ATP2B4 CBLN4 UBE2V2 MAPK1 NRCAM TMEM59L OXR1 CLSTN1 UBA52 NRGN LRP1B PRDX1 FIS1 PET100 RELN MPPED1 CRYM LDHB MT-ND3 RPL21 CERS6 STXBP1 CBX6 NAP1L3 USMG5 UQCRH CPLX2 ARL6IP5 CDS1 DNAJC6 PSMD12 CAPNS1 MT-ND4 YBEY ATP5J PPARGC1A CAMKK2 CABP1 SEPW1 DCLK1 MORF4L1 RPL12 NRN1 VSTM2A RGS4 SUMO1 PRKCE GPR98 SERPINF1 SEPT4 CALM3 AURKAIP1 CDC42SE2 NDUFB4 PODXL RASGRF1 GNAQ RPL37A FAM174A CD24 ACTG1 LIMK1 MAP2K4 ONECUT2 SERINC3 FAM163B RPL3 ITM2B MT-ND4L CDH8 MZT2B BEX2 GDI1 TMEM150C HSP90AB1 ALDH5A1 ALDOC TMEM117 MT-ND1 MYBPC1 BNIP3 MAP7D2 EGFL7 NME1 GNB1 CACNB1 SYN1 FAT3 SYNGR1 SNCB SERF2 CCDC144NL RPL17 CNTNAP3 RPL17-C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 CHN1 TMSB4X SNAP25 DNAJC21 HSP90AA1 MT-ND2 MTRNR2L12 MT-ATP6 ATP1B1 RP11-111M22.2 RTN4 PRKACB MT-CO2 MAP1B YWHAG APOE LMBRD2 C1QC RPS28 C1QB MT-ND3 SCN1A PGK1 LINC01296 SYTL2 GRIN2A RPL36A LPAR6 DKK3 FAM84A ZMAT2 OLFM1 SARAF CSF3R TSPAN7 FTH1 PAK1 ATP6AP2 RORB PREPL OR6D1P BIRC5 BASP1 HAMP CYFIP2 APLP1 HOPX APLP2 SEPW1 SYT1 ACTB NRF1 PRKCB CALM1 SKP1 MAST3 PPP3CA MT-ND1 KIF5A YWHAB ARL6IP1 SULT4A1 BSG ISCU CALM2 PJA2 FAM19A1 IFI44L BAI2 NECAB1 PDK4 MTRNR2L1 NEGR1 IDS ARFGAP2 TUBD1 MFSD6 PI4KA CADPS2 TPT1 RPS15 EIF4A2 MAPK8IP2 SYT5 LMO4 HHATL NFE2L1 SIRPA ZBTB18 NRN1 UBB EPB41L3 PRUNE2 PIK3R1 ALDOC SLC12A5 SLC1A3 ATP1A3 SCN3B ANAPC11 ALDH1L1 TERF2IP FARSA CERS6 PKM TSC22D1 QKI MAPK1 MRVI1 RANBP1 GAPDH NAP1L3 PEX5L RPL13 MAP2K4 JUND SPTBN1 NREP WASF1 NDUFC1 PLSCR1 NDUFAF3 PLD3 PLP1 MYL6 PNMAL2 MS4A7 RELL2 CCR1 SERINC3 COL5A2 RAB31 EIF4G2 TOMM7 ONECUT2 MAP1LC3B ZFP36L2 NDUFB2 ATP6V1B2 TMEM147 TMEM59L PPIH ATP5E TPPP SNCA SLCO2B1 GUCY1B3 VSTM2A ACTG1 ATP6V1C1 GNG2 EPHB1 SLC9A6 PARP9 RPL6 CACNA2D2 PNMA1 LYSMD2 TUSC2 KCNAB3 CNDP1 GABRA1 SYT11 UROD TBC1D7 SYT13 NEUROD1 AP3S1 ENOPH1 WNT5A CABP1 SELT SPI1 KCTD12 ARPP19 RCAN2 EPHB6 RHBDD2 MCHR2 PNMAL1 PPP3R1 AES ATPAF1 CAPZB SPP1 MTATP6P1 PPP2R1A C1ORF105 PSD3 DPYSL2 MT-CYB ACTR10 CDC37 RASGRF2 CHMP4B NEFL CD53 FBXW11 MT-ND5 KIF21A FBXL16 PRDM8 RELN CST3 STAB1 COL24A1 PPP3CB FCGR3A TMSB10 CA10 SLC16A11 PRNP MRPS21 TBR1 NFIA EIF1 VAMP2 ALCAM TUBA1B ELAVL4 APP CNTN1 PPP2CA EPHX2 GDI1 CYBB PEBP1 PSMD8 NME1 TSPYL1 PLOD2 ATP5A1 SLC17A7 ITGB2 NELL2 VSNL1 ERH SNX3 YAF2 PSMC3 MARCKS SMIM13 OCIAD1 REEP5 CLU RTN1 UQCRQ RPL37A TMTC4 ELMO1 KLHL5 DEXI TLE4 FOS KLC1 IL13RA1 CISD1 RPL17P50 CPLX2 NDUFS5 NRCAM PDE1A EFR3A KCNA1 SLC17A6 ATP6V1E2 ATP1A1 PGM2L1 PTMA CLTA ALDOA BSCL2 ATP6V0C RP11-20I23.1 FKBP1A NSF TUBB LILRB1 AC244489.1 RPL21 GTF2H2C_2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 SNAP25 MT-CO1 ENC1 RTN1 ATP1B1 PNMA2 MT-CO2 MAP1B CHN1 SYTL2 TUBD1 MT-CO3 SCN3B PRKCB RTN4 COL5A2 GAPDH SYT1 CALM1 CALM2 YWHAZ RTN3 TUBA1B BIRC5 ATP1A1 CADM2 OXR1 MT-ATP6 OR6D1P ZNF385D RP11-219A15.1 SCN1A ACTB NGEF PRNP MT-ND4 PPP3CA TSPYL1 GPM6A FAIM2 FGF12 GHITM MT-CYB PRKCG HMGB1P8 THY1 ITM2B PSD3 NAPB LYNX1 SPARCL1 HSP90AB1 DPYSL2 SLC35B1 NECAB1 TESPA1 MT-ND2 NRGN PLCB1 NR1I3 SERINC1 MGST3 SLC8A2 VSNL1 CDH8 TRIM37 KIF21A TUBA4A NSF CFL1 HSPE1 NDRG4 TMSB4X STMN2 COX6C RASGRF1 NGFRAP1 C6ORF141 MDH1 HSP90AA1 RAB1A C9ORF16 ITFG1 NDFIP1 CDC37 MSMO1 NDRG3 ANO3 RPL15 GDA BEX1 YWHAB APBB1 VAMP2 ONECUT2 TMEM130 DYNLL1 YAF2 TUBA1A ZBTB18 PCMT1 ATP6V1B2 CMAS SLC25A4 OLFM1 BRK1 CLSTN1 AP2M1 PTPRN STXBP1 CCK PGAM1 COL5A3 NRCAM CYFIP2 NAT8L ENO2 HOMER1 AC244489.1 ATP6V0E2 CARTPT BSCL2 ALDOA CFH PGK1 ARFGAP2 KIF1A BAI2 EXTL2 ATP5J2 WDR4 ARPP19 CDK5R2 TMEM14A PGM2L1 PINK1 NARS LINC00087 TPT1 PSMD12 MED10 YWHAH TPPP ATP5A1 MRPL20 ATP6V0B MFN2 BCAP31 CDKN2AIPNL SNX10 PPIA ATP5B SRP14 SEZ6L2 CX3CL1 KCNAB2 AC010731.4 LHFP C1ORF115 RAPGEF5 ATRN LINC01296 DIRAS1 KLC1 PCSK1 SAP18 ACOT7 NDUFB11 PJA2 MAP2K4 LZTS1 RABAC1 PCDHA10 MAPK1 RHOA PEX5L EIF1 RASGEF1B NUAK1 PTPRN2 ITM2C SNCG PTPRS ADAMTS9 MTRNR2L12 TMEM151A HSPA8 SLC7A1 SSBP3 PTK2B NHP2 IPCEF1 AP2B1 LGALS1 SLC39A3 ACTC1 ESYT1 EPHB6 GAP43 CAMK2G C14ORF132 RPS4X KRAS SCAMP5 SUMO1 PDE1A TCEAL2 CAMK4 TM2D3 NDUFS5 LDB2 MT-ND1 TSPYL4 SSTR2 ASAP1 ENSA TBR1 ZFAND5 YWHAG CISD1 GPX4 CD63 ATP5I MTCH1 OPCML ADD2 STUB1 RPS3A CALB1 COX17 INSIG1 PGRMC1 TBCB DSTN LANCL1 ATP6V0C CD59 RNF208 UBA1 TOMM7 LMO4 HMP19 NDUFA5 MANBAL HOPX ATP5G1 PLD3 MTRNR2L1 PSMB5 INPP5F NDUFA11 ROBO2 NOS2 SLC12A5 ATP5E ZBTB39 MT-ND3 TMX4 CDK5R1 LDOC1L SNN RAB7A ARHGDIG GFRA2 UCHL1 B3GNT1 GABARAPL1 NDUFA13 TPD52 STMN4 FSCN1 FAM163B CADM3 PHYHIP ADRA1D ATP1A3 CRIP2 RPL19P18 USMG5 SEPW1 CHL1 RGS4 NFIA COX4I1 CRYM WASF1 WARS TEX2 RPL17 RPL23A SGK223 PTGES3 STX1A NDUFB1 SLC22A17 RPL13 FBXL16 CAP2 ARL6IP5 ZNF365 FAM134A ABHD14A C2ORF80 ISCU ABRACL TPRG1L CALM3 ATOX1 ENOPH1 ATP5C1 RAP2A MAP7D2 CPLX2 GTF3A ENPP7P8 SUB1 CAMKK2 LIN7B GABARAPL2 AP2S1 KIF5A COX6A1 SNCB CRIM1 NPTXR RNASEK-C17ORF49 SYT4 ACTR1A ARL6IP1 HPRT1 RP11-20I23.1 EIF4A2 SLITRK1 VDAC1 OPN3 RHBDD2 PDP1 AK5 RPL32 SNCA NXPH1 BNIP3 C4ORF3 MRAS CDK14 CCT5 EFR3A RPL10A RPL39 TMEM59L NAA38 C12ORF49 PLEKHH2 TMEM117 MAPRE2 ARF1 BANF1 TSPAN7 UBC ATP5J CLPTM1 TRPT1 UQCRH PEBP1 PODXL CETN2 APLP2 PFKP FTH1 EDF1 CCDC25 UBE2N SPRYD3 RAB11A WSB2 NDUFV1 PPM1A PIN1 SMAP2 RELL2 GPR56 MRPL51 REEP5 COX5B RPH3A EGFL7 NELL1 IDS NGRN SKP1 PCDHGA5 PCDHGA6 PCDHGA10 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SYT1 MT-CO3 MT-CO1 CFH MT-ND4 MT-CO2 CHN1 CABP1 GTF2H2C_2 PRKCB RP11-111M22.2 SNAP25 ATP1A1 NECAB1 ARF3 NPTN TSPYL1 EIF4A2 MT-ND2 MTRNR2L12 PEBP1 CLU CCDC184 SCN3B PPP3CA MT-ATP6 KLC1 MAP1B PSAP STXBP1 HINT1 ENC1 NCAM2 YWHAB OLFM1 CAMKK2 NR1I3 OR6D1P DYNLL2 MAP7D2 TUBD1 SFTPD ACTB ANO3 RP11-454L9.2 RAB6A SPOCK3 NGRN WNT5A DLD CTNND2 WBP2 GSK3A KIFAP3 EIF1B CLTC SCN1A PRKCG C16ORF93 GRIN1 GRIN2A ITPR2 RTN4 WFS1 ATP6AP2 VSTM2L ENSA RHBDD2 TSC22D1 CAPZB EIF1AX PAK1 MORF4L1 PCDHB4 UQCRH RPH3A SYPL1 TMEM59L ATP6V0E2 SMS FAM3C ONECUT2 MAP1A CD24 TMOD2 RP11-631M6.3 RORB NPTX1 MAP4 RAD23B TSPAN7 CALM1 TMSB4X IDH3A NDRG4 SERPINI1 RPS28 HTR2A PTK2B SEPW1 ARL4C LDHB CORO2B CHMP4B BCAS1 VDAC2 NEUROD1 PARP4 GOT1 B3GNT1 MT-ND5 CNTNAP5 PTPRN2 NPTX2 SLC25A4 IDS NCEH1 ATP1A3 SNAP91 FBXO2 DCLK1 BEX4 CFL1 NEFL COL6A1 SYNPR SSBP3 RPL38 ISCA1 KIF21A HOMER1 PRNP VSNL1 MRPS28 KCNAB2 CHCHD2 GAP43 DKK3 PJA2 SCN1B ARPP19 MAP1LC3A UBC KCNC3 MTATP6P1 SLC12A5 NRCAM SHD SYNJ1 PSMB5 KCNMB4 TRMT112 ACAT2 ATP1B1 LINC01296 SPOCK2 H2AFZ CALCRL MTRNR2L1 RPL31 OPN3 PHPT1 ATP6V1G1 PSMD2 SYN2 ASPDH YWHAG MT-CYB ITM2B ANXA7 C18ORF32 SNN TPI1 ATP2A2 SLC7A5 GLRA3 TOLLIP MBP ZBTB20 DAW1 NAPB NAPA TUBA4A ADSS IGSF21 ARL8B NEGR1 PCDHGA6 BSCL2 MTRNR2L6 PSMC1 PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L12 RAB3B MTRNR2L1 NFIA DPYSL2 CORO2B PREPL STXBP1 VSNL1 NPTXR ID2 GPM6A AP1S1 GOT1 RTN4 TBC1D15 ZNF385D CADM2 STK39 REEP2 BSCL2 RRAGA ENO2 RLIM ENC1 GABRA1 MT-ND1 YWHAZ ATP1B1 THY1 RTN4R PEX5L FER1L4 CHL1 ROBO2 OLFM1 CHN1 KRAS KCNC2 WASF1 PPP3CB UQCRB MTCH1 CA11 SYT11 CALM1 LINC00087 TMSB10 ATP2B4 VGF PLEKHD1 PPP3CA ATP9A GPR98 LDB2 OPA1 PSD3 SCN3B NR1I3 SLC22A17 STUB1 FBXL16 PLCB1 CAPZA2 MTRNR2L6 SLC24A2 CKB EIF1AX PTPRN MT-CYB HSPB1 CLSTN1 MT-ND4 NPTX1 CABP1 APLP1 TMEM59L SLC12A5 CPNE8 MAPK1 SNAP25 RAPGEF5 EDF1 NDFIP2 GPX4 MLLT11 SCD5 PRNP PDP1 SLC25A4 ITM2C MED31 HSP90AB1 DNAJC5 MRPS21 TESPA1 NGEF CAMK4 ATP1A1 POU3F1 MT1X GRIN1 ATP2B2 SERF2 MYOM2 TGOLN2 GTF2H2C_2 PCDHGA10 PCDHGA6 PCDHGA5 DNAJC21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-CO1 MT-ND1 MT-ND4 MT-ND3 MT-ND2 MT-CYB MT-CO3 CREG2 SNAP25 RTN3 MTRNR2L12 CHN1 SYT1 EPHA6 NEUROD2 PHYHIP MT-ND5 NDUFA13 NR1I3 NDRG4 MED10 TM2D3 LDB2 TUBA1B COX7C GPR158 PAFAH1B2 RHOB TSC22D1 NAPB GAPDH GDI1 HOPX KIFAP3 HK1 CSDE1 ARL6IP1 NPTX1 CDK5R1 PPP2R2B RPL21 MAP4 TMEM130 THSD7A ATP2B4 PHYHIPL VSNL1 RP11-111M22.2 KLHL5 KIF1A PRNP CDH8 PTCHD4 HSP90AA1 PSMD12 RGS4 HSP90AB1 SLC17A7 RAP2A NECAB1 FKBP8 MDH1 MT-CO2 SLC24A2 APP SYTL2 MTRNR2L8 ATP2B2 RTN4 ELMO1 DKK3 CTNND2 ATP5J2 GUCY1B3 KCTD12 SPARCL1 TBR1 ALS2CR11 PPP3CA EPHB1 MAPK1 MTRNR2L1 SLC38A11 PPP1R7 MTRNR2L6 NSF KLC1 GTF2H2C_2 BIRC5 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 CHN1 MT-CO1 SYTL2 MT-ND1 SNAP25 MT-ND4 RTN3 MT-CO2 CALM2 HSP90AA1 MT-CYB MT-ND2 BASP1 ATP1B1 SYT4 GPM6A SLC12A5 ATP1A1 PRKAR1B RTN4 PTK2B CALM1 MTRNR2L8 ATP2B2 PRKCB RP11-111M22.2 OR6D1P MT-ND3 GDI1 MTRNR2L12 RAB3B OLFM1 FAM127A NGFRAP1 ATP2B4 WASL SYT1 BIRC5 GRINA NECAB1 PSAP ATRN FTH1 CABP1 MAP1B VSNL1 NRCAM HMP19 DKK3 NOS2 ONECUT2 SNX10 OCIAD1 MTRNR2L1 PKM BSN PEBP1 CCK RPS15 PRKACB HTR2A TSPYL1 ATP6V1C1 CADM2 STXBP1 KIF5A MT-ATP6 ATP5B ENC1 APLP1 NCDN APP MAPK8IP2 PPP3CA LINC01296 HSP90AB1 RPL13A CDH8 ARFGAP2 UBB PDGFRB PNMA2 GCHFR SLC25A4 GABRA1 PARM1 ID2 FXYD6 NDFIP1 LPPR4 KIRREL2 RBX1 NEGR1 SIRPA RPL8 CSDE1 PPTC7 GMFG THY1 CTC-575D19.1 AES HPRT1 DNAJB6 STMN3 PINK1 C14ORF132 SPTBN1 GOT2 MT-ND5 PREPL MT-ND4L KCNK1 YWHAB ANXA7 RPL32 CLU EIF1AX SLC17A7 EIF4A2 ATP6AP2 EFHD2 C14ORF2 PSD3 CDC42SE2 TPRG1L FAM134A ATP6V0B PDP1 MTATP6P1 DCLK1 NIPA1 ETV5 ARHGDIG TMSB10 NDUFA5 KCNA2 PGD OPRM1 GABARAPL1 PPP2R4 TUBA1A COMTD1 SLC8A2 NEFL SCN4B YWHAG JUN UBE2N ARL6IP1 PSMC3 ASB13 CHGB CTNNB1 HAPLN4 UQCRH SNRPN GHITM BCAP31 REEP5 DNAJA1 NARS ATP5A1 TMOD2 UQCRB CERS6 CAPNS1 DYNLL1 PRNP UBE2V2 PJA2 ANO3 SLC38A1 ACOT4 HCN1 PIK3R1 NGRN RAN FAT3 NR1I3 SNCG CHL1 GLIPR1 HMGCR NCALD MRAP2 RAB11A TPD52 CNTN1 VPS35 FKBP1A GRIN2A UQCRC2 CBX6 ATPAF1 UBC UHMK1 SLC24A2 TOMM20 TAGLN3 SULT4A1 NDUFB7 CA4 TOLLIP EPHB6 PEX5L TSHZ2 AP3S1 SRP14 PRPH2 CD99L2 TMA7 ATP5G3 SYN2 MORF4L2 NEFM CDC37 ATP2A2 HOPX TRIM37 SYT13 ATP6V1E1 PCDHA4 MORF4L1 ENO1 GNB1 TCEA2 PEF1 ZNF503 CALM3 HS6ST3 PRDX5 CACNA2D2 CBLN4 FAM96B LMO4 SGK223 MAST3 SYN1 RPL31 SLC22A17 PCMT1 NMNAT2 RGS4 RAB6A RAP2A SLC35B1 PRDM16 FBXL16 ATP9A ATP5F1 PTGES3 CLTC CAPZA2 SLC39A10 SRM MRPS21 TMSB4X CDH22 RPS12 TKT SMIM13 USMG5 RPL41 BSCL2 IDS ALDOA FAM3C RP11-219A15.1 GTF2H2C_2 RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RP11-219A15.1 SYT1 MT-CO1 PIK3R1 MT-ND2 MT-ND1 MT-CYB MT-ND4 PTK2B LMO4 ATP6V1B2 ACTB PREPL THSD7A ATP1B1 SNAP25 MT-CO2 RPS3A CADM2 SARAF CDH13 VSNL1 OXR1 SYNGR3 NEFL HPCA TF HOMER1 TMEM179B ADAM23 RELN PSMD2 MAP1B PTPRN OLFM1 HSP90AB1 MT-ATP6 CACNG3 SMS MAP4 MT-CO3 PPP3CA RP11-111M22.2 CDK5R1 PAFAH1B2 GPM6A SLC39A10 CEND1 ENOPH1 CREG2 FKBP1A CCDC25 BTBD10 CPLX2 EPHA6 CCK CYFIP2 VEGFA MAPK1 CLIP2 CCDC141 CDC37 NPTX1 SLIT3 NCDN SERPINI1 SNRPN CLSTN1 ELAVL4 RPL37A MZT2B STMN1 FXYD7 ATP6V0D1 GPR158 MAPK8IP2 RTN3 DGKG CBLN4 RPL13A ITPR2 STXBP1 EIF1AX C2ORF80 GABRA5 CDH8 PHYHIPL CALM3 CTBP1 CABP1 KIF21A KCNAB2 PPP2R2C PNMA2 RPS28 UBE2E3 CHN1 CSDE1 RAB40B CRIP2 GNAQ LMO3 MAPRE2 SYN2 ID2 CALM2 MT-ND3 CLDND1 GNB1 TSPAN7 TESPA1 SGCD SYTL2 RAB3B ZNF385D TBC1D15 DNAJC21 GPR98 MTRNR2L8 TMEM191A IDS MTRNR2L12 HNRNPA1P40 AC244489.1 PLEKHD1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 CHN1 RAB3B SYTL2 MT-CO3 MT-CO2 NECAB1 MT-ND3 MT-CYB MT-ND4 BIRC5 RTN4 ENC1 MTRNR2L1 UCHL1 IDS CADM2 NR1I3 NPTN MTRNR2L12 YWHAB PRKCB YWHAG CALM1 MT-CO1 CALM3 CALM2 TOLLIP KIFAP3 MAPK1 PTK2B GPM6A MAP1B YWHAQ TBC1D15 PPP3R1 RPS2 EPHB6 PHYHIPL ARF1 YWHAZ SMIM13 SCAMP5 RP11-111M22.2 MT-ATP6 NUAK1 FTH1 CDK5R1 RAB11A FAT3 MT-ND2 ARL8A MT-ND1 TUBD1 ADAM23 ID2 REEP5 NDUFV1 APP ISCU ATP6V0B TSC22D1 BASP1 STXBP1 PLCB2 LMO4 THY1 PIK3R1 NGFRAP1 CHL1 MAST3 RHOB PI4KA ATP1A1 APLP1 AKAP12 LYNX1 SLC9A6 CYC1 TLE4 GLIS3 PPP3CA LIMK1 CSDE1 BEX2 RPL12 SERPINI1 MAPRE3 RAB6A CDH8 NUDT4 COL12A1 LCP2 SALL2 ACTB MTPN RTN3 CX3CL1 VDAC1 YWHAH ATP6V0D1 MTCH1 SPCS2 TLN2 WBP2 SHARPIN WDR47 CDH13 TOMM22 C3ORF80 COX8A AP1S1 HOMER1 PDE1A SERINC1 CAPZA2 PRKACB TSPYL1 SLC25A22 SPARCL1 FAIM2 RASGRF2 TMSB10 TMOD2 TUBA1B CA11 TPRG1L RPL26 RPL38 TCEAL2 LHFP GPR158 SLC25A11 CBLN4 RELN PPP1R7 CTXN3 NDUFA5 REPS2 PCDH19 NAP1L2 CLU CDH22 CREG2 ATP6V1A GABRA5 MTX3 MTATP6P1 MTRNR2L8 C9ORF24 STMN2 KCNA1 ACTR10 ELAVL4 HCN1 ZBTB18 VAMP2 RPS28 RPL31 TSPAN7 CNGB1 NDUFB11 TERF2IP SNRPN HSD17B14 ANAPC11 PRKAR1A ATP5E GSK3A ATP6AP2 MDH1 ATP1B1 RORB PDP1 RAB40B ARL6IP1 NEFL OPN3 SSTR2 RPS27A PGM2L1 MSMO1 NCAM2 GNB1 ATP5B C1ORF95 KIF1A GRINA KCNAB2 NDUFS5 SLC39A10 C1ORF52 AAMDC EFHD2 NPTX1 BNIP3 STMN1 KIF21A GHITM GOT2 ISCA1 KCNA2 CRYAB ATP6V1G1 PRKAR1B FIGN MLF2 PREPL PGRMC1 DCTN1 ARL1 SPTBN1 COX4I1 STMN3 WASL CKB SEPW1 CTNND2 ATP2B2 RPL11 EIF4A2 RPS6 MT-ND5 STUB1 SH3RF2 USMG5 OCIAD1 MTND1P23 GPR26 GPR98 PEA15 C1ORF115 PPA1 ABCA8 NRCAM RGS4 PPP1CB VSTM2L CADM3 NDUFA12 GNAQ IPCEF1 LMBRD2 VSNL1 SNCA LPPR4 CDK17 RAB4A C14ORF2 CHMP4B PTPRN MTRNR2L6 SV2B OLFM1 TMX4 SLC26A10 TAF7L NAP1L3 RP11-382N13.1 STK31 KCNMB4 PPP2R2B ZMAT2 EGR3 TPPP RAB6B ALDOA NSF SKP1 AC244489.1 ATP6V1G2 TUBB CYB5R3 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 GPM6A RTN4 MT-ND4 MT-ND2 MT-CYB SNAP25 MT-ND3 PPP3CA CKB PREPL MT-CO1 RPS12 UQCRB RPL36A NECAB1 PRKACB ARPP19 DPYSL2 PNMA2 RPL37A CALM1 ITPR2 CLSTN1 PCBP1 PRNP SERINC1 RP11-111M22.2 TLE4 RTN1 PIK3R1 EIF4A2 ENC1 PTK2B ENO2 MT-ND1 CALM2 RPS28 BIRC5 SERPINE2 RAB2A PSD3 C19ORF70 PSMB5 FAIM2 SLC22A17 CDK5R1 MT-ATP6 PDE1A APP ATP5J ZFAND5 ASAP1 SERPINI1 RPS3A COX6C GDI1 RPL11 THY1 CFH TMSB10 OXR1 MIR3916 CHL1 SERF2 NPTN SUB1 MAPK1 NPTX1 ANO3 LINC01296 SNCA LMO4 ARF3 HINT1 USMG5 YWHAB MTATP6P1 FXYD6 GHITM MAP2K1 RPL32 ATP2A2 PJA2 ARL6IP1 HCN1 TAGLN3 PSMD2 SYTL2 ESCO2 RAB3B RP11-219A15.1 ATXN10 CA10 PAM PSAP CA11 NDN TMEM130 NCDN CTSD DYNLL1 ARL6IP5 BAI2 TBCA RPL23A C14ORF2 IDS LDB2 JAKMIP1 BLOC1S1 PRDX3 RAB11A NUDT21 PCMT1 KCNAB2 AES HK1 ATP6AP1 PFN2 YWHAQ FMO5 ATP5I ZFHX4 KCNK1 SUCLA2 YBX3 MAP1B REEP2 NDFIP1 SCN1B NIPA1 SKP1 FGF12 GAPDH RELL2 LMBRD2 TEX2 KIF1A PDP1 SLC25A4 PPIF SPOCK3 CHN1 CDC37 LMO3 EPHA6 TUBA1B CLIP3 C6ORF1 SLC1A2 ADAM33 TPT1 ATP1B1 SKAP2 RAD23B STMN4 TERF2IP EPB41L3 RPS27A TTN SLC12A5 ENSA ATP5H RTN3 OPCML YWHAG RPL38 SSTR1 YWHAZ SNN TSPYL1 PSMB7 SSBP3 HOPX TCEA2 PCDH17 CAMKK2 SLC39A10 TMSB4X NPTX2 ACTG1 PLCB1 FUNDC1 SYNJ1 ELAVL4 KMO REEP5 MAP1A NSF AZIN1 GDA ATP5J2 NPTXR OPN3 BTBD10 NDRG4 RPS4X PEX5L TMEM35 PFKP PHYHIP SARAF CADM2 LPPR4 CADPS2 PRKCB ATP5F1 OR2M4 DNAJC5 SLC9A6 NELL1 PAK1 DMTN GABARAPL1 PMEPA1 IGSF21 BANF1 BSN SMS HSP90AA1 OLFM1 CYFIP2 ACTB PPP2R4 UBC FAT3 EGFL7 KRAS NGFRAP1 DKK3 CDK14 CSDE1 EXTL2 PPTC7 LDHB TM2D3 PGK1 NDUFA13 ISCU PKM PTMA LAMA4 PNMA1 LRRIQ1 MYL6 GADD45B BNIP3 ATP2B2 UQCRC2 GDE1 RPL31 WASF1 TPI1 PSMD12 PEA15 RPL8 SPATA13 PTGES3 ITFG1 TMA7 TSC22D1 PLD3 MAPRE2 THSD7A PPP3R1 SELT RAB3IP RPL7 PGAM1 NUDT4 BSCL2 RPL21 PCDHA9 PCDHA4 PCDHA10 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYTL2 MT-ND4 RAB3B MT-ND2 MT-CO1 MT-ND3 MT-ATP6 VSNL1 PPP3CA MT-CYB PIK3R1 SYT1 MT-ND1 ENC1 MT-CO2 SNAP25 DKK3 UCHL1 RPL37A CHN1 NPTN MAP1B TUBA1B RPL31 MTATP6P1 SLC12A5 TSPYL1 PREPL DIRAS2 ARPP19 SLC38A11 RPS26 SARAF MAST3 RTN1 NECAB1 CDK5R1 CALM1 DCLK1 GPM6A ZBTB18 APLP2 CLU MTRNR2L12 SPARCL1 RP11-219A15.1 BIRC5 EPHA6 NPAS3 ZFP36L1 RTN4 SERPINI1 KCNA1 TSC22D1 GABARAPL1 PRKCE ACTR10 MAPK1 PDE1A AP1S2 PCDHGA10 YWHAG YWHAB RPS6 TPD52 ELMO1 CARTPT UTRN MT-ND4L SCN1A THY1 NCDN TPPP CNTN1 FABP7 PJA2 RPL12 TLE4 OLFM1 RPL26 RPL36A DCTN1 VAMP2 FAIM2 RPS4X RPL38 PKM SERINC1 SH3GL2 SNAP91 PNMA2 SLC26A10 ARFGAP2 KLHL5 RPS15 ZFAND5 GNG2 KCNMB4 MMD DPYSL2 PSAP CALM2 RPL32 PAK1 RPL13A ENO2 F8 BRK1 ATRN SLC30A3 CKB PRDX3 RPS27A EIF4A2 ATP2A2 CNR1 STMN1 MT-ND5 CALB1 PDP1 RPS3A COX7A1 HPRT1 CAP2 PPIA PAFAH1B2 CPLX2 DYNLL2 TPT1 LMBRD2 OR6D1P PCDH8 CD24 RPS10 RPL17-C18ORF32 PEA15 MT3 CHL1 EFR3A DHCR24 MED10 NDUFA1 EID1 RPL8 ADD2 ATP5O ACTB RPL17 FKBP1A TMEM130 KIF5A PIN1 UQCRC2 ATP6V1E1 TMTC1 BCL11B GDI1 PCMT1 CTNND2 PPP3R1 PSMD8 CBX6 APP ADSS KCNC2 RBX1 ITM2C NEGR1 GHITM ANKRD30A PLCB1 PRKCB NAT8L PI4KA SPRYD3 ELAVL4 PGM2L1 MDH1 TMEM59L FAM19A1 PRKACB RPL7 LRRIQ1 ENPP2 NDFIP2 SMAP2 CDH22 CLTC HOPX ACTG1 NDFIP1 NDUFB3 SERPINE2 BEX1 SYN1 MOBP RP11-111M22.2 WASF1 WASL SEZ6L GAP43 SGCD PRNP UBQLN2 GABRA1 TLN2 CAMK2G ZNF343 GUCY1B3 BAG4 ITM2B CLSTN1 SUB1 USMG5 ANXA7 PHYHIP STXBP1 RTN3 DISC1 HSPA8 GNB1 ATP6V1B2 MTRNR2L8 UBE2E3 TMA7 GMFB COL24A1 AES SRM SUMO1 HOMER1 CALM3 CDH8 TOMM22 CA11 PCP4 BCAS2 STX1B ANO3 PPP2CA HCN1 COX6B1 CYP1B1 TM2D3 FAT3 NFIA ATP5J CDH13 DNAJC6 VDAC1 ATP1A3 CD99 ZBBX FIS1 SSBP3 DPF3 SLC22A17 C18ORF61 WBP2 ITPR2 DYNC1I1 UBE2N TSPAN7 CDC37 SKP1 TPI1 PPARGC1A CD59 FAM219A MDGA1 NPTX1 ATP6V1A RAB4A RPS28 FAM19A2 CRIM1 HMGCR APLP1 HDLBP TMEM132D RAB3A PFDN1 C1QL2 CYFIP2 AP2S1 LAMP5 INPP5F SLC25A6 LINC01296 POLR2M HSP90AA1 ATP6AP2 KCNAB2 UQCRB PINK1 CISD1 ATP2B4 CERS6 CADPS2 ARHGAP29 PDE1C DNAJA1 NDUFB2 AP2M1 EPHB6 MTRNR2L1 NDUFAF2 NPTXR TRIM37 COX7C SELT RPL3 ATP6V0E2 ZMAT2 MLLT11 ATP1A2 DYNLL1 RPL15 IDS HMP19 PSMD12 SLC39A10 CAMK4 RELL2 PGK1 MTRNR2L6 RPL18A RELN BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ATP6 PPP3CA MTRNR2L12 MT-ND4 MT-CYB MT-ND1 MT-ND2 MT-ND3 CFH RP11-111M22.2 C1ORF115 PRKACB RTN3 CALM1 GDI1 SYTL2 RAB3B SNAP25 CDK14 USP5 IPCEF1 CADM2 FOXQ1 MTRNR2L8 VDAC3 RAP2A MED31 SLC25A22 OXR1 FSCN1 SLC39A10 GPM6A CADPS2 ANKRD20A11P RABAC1 MTCH1 COX8A COX7A2L RAB2A RP11-219A15.1 HMP19 RHBDD2 FAT3 SUB1 CDH8 CLSTN1 SLC8A2 HSPBP1 ATP2B4 UROS GNAQ DNAJC5 PPP1R7 GPER1 ATP2B2 RTN1 TGOLN2 CADM3 SLC38A11 B3GALT2 PEX5L ANKRD26P3 PLCB1 CDK5R1 SLC12A5 ARHGAP35 TMEM59L CLU RAB5C HMGCR GMFB SPARCL1 DEXI VDAC2 MT-CO2 SARAF DNAJC6 EID1 INSIG1 PTPRS CRIM1 PPP2R2B WASF1 NGFRAP1 TBC1D15 IDS AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MAP1B CHN1 SYTL2 RAB3B CALM1 RP11-111M22.2 SLC39A10 MT-ND1 ENC1 CADM2 FTH1 CLSTN1 MORF4L2 APLP2 LINC01296 CHL1 NARS SKP1 SLC12A5 FGF12 ATP6AP1 NRCAM OLFM1 MT-ND4 MT-CO2 PSAP RTN4 DCLK1 PTK2B DYNLL2 SSTR2 ATP5I GRIN2A OAT CLU PPP3R1 WBP2 PKM CABP1 SCN3B PPP2R1A RPL21 MTRNR2L12 PRKCE ATP5E ACTR1A AC244489.1 PFN2 MT-CYB SOD1 ARPP19 TUBB4B NECAB1 EZH2 NEGR1 RHOB ACTB TMEM150C MAST3 NEUROD1 CNR1 ATP6V1C1 NDUFA13 NEUROD2 SELT C1ORF115 SLC38A11 CLEC2L NPR3 WBP11 PTMA NUAK1 SNCB PEA15 CYCS HK1 OPCML NDUFB5 DNAJC6 HSP90AB1 GUK1 KCNA2 KCNA1 SPOCK2 EFR3A YWHAZ MTATP6P1 BAI2 CNGB1 GAP43 SEZ6L CCK PCDHGA10 RHBDD2 STRAP PEX5L CALM3 TMEM130 PREPL KIFAP3 KCNC3 ATP5G3 ATP5B TMEM65 TESPA1 MAP2K4 TERF2IP PRKACB MORF4L1 SEPW1 DCC FAM19A1 DSTN ATP6V1A LMO4 CALM2 CAMKK2 MT-CO3 RAB6A IPCEF1 ARL6IP1 CRIP2 MT-CO1 BCAP31 GPM6A PTPRT ATP5A1 NR1I3 TRAPPC1 LDHB NDUFB10 FXYD7 GLRA3 MAPK1 ACTG1 NGEF YWHAH SMS TEX40 UHMK1 WASF1 PRKCB ELAVL2 TMOD2 PGK1 IMMP1L COQ10B FKBP8 COX7C KITLG KLC1 RHEB COL11A1 CADM3 CARTPT FAM219A COL6A1 ATP2A2 OCIAD1 RELN PNKP SCN1A SLC17A7 EIF1B EPB41L3 EGR3 THY1 RTN3 NDFIP2 KIF21A PEBP1 HIF3A LCNL1 AES RPL26 CDH22 YJEFN3 BSCL2 UBA52 TUBD1 RAB7A SYT1 PNMA2 PPP3CA MAP2K2 PPA1 MTG1 SPRN INA RBX1 SUCLA2 TUBA1A RPS6 SERTM1 NDRG4 OPA1 GLIS3 PPP1R7 ST20 UBE2D2 PEG10 PAFAH1B2 PGRMC1 CTBP1 CHI3L1 PSMA7 ELMO1 GABARAPL1 KCNV1 NPTN ATP1B1 CAPZA2 EPHA6 MT-ATP6 DIRAS2 PRDX1 CREG2 EIF4A2 POLR3H NCALD GHITM ATP9A ITM2B ONECUT2 NGRN IDS PPIA ALDOA NSF NUDT4 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 RAB3B CHN1 MTRNR2L12 MTRNR2L1 MT-CO2 MT-CYB TBC1D15 SNAP25 ATP1B1 SYT1 RTN1 PRKCB GRIN1 MT-ND1 MT-ND3 MT-ND4 ENC1 TUBA1B IDS MT-ATP6 CREG2 CPLX2 HNRNPA1P40 CABP1 RP11-111M22.2 RTN3 MTRNR2L8 BIRC5 APP ZNF385D MTRNR2L6 SUCLA2 SPARCL1 BSCL2 PLCB1 GABRA1 STMN2 EPHA6 RPL37A NAT8L TMEM59L YAF2 NECAB1 GDI1 ATP1A1 CLSTN1 VSNL1 EIF4A2 MT-ND2 PIK3R1 NAPB NR1I3 CCK MRPS21 ZFAND5 SERPINE2 STX1A RORB ENO2 PPARGC1A LANCL1 FTH1 ETS2 ATP2B2 SPOCK2 NRCAM TSPYL1 YWHAH SCN3B TMSB4X GPM6A TMSB10 RAB6A CPE APLP1 CKB RPL38 SLC12A5 KCNK1 RAP2A CDK5R1 SIRPA SNCB YWHAG ELAVL2 ATP9A UBE2N RTN4 VDAC1 SERINC1 DNAJA1 PNMA2 NMNAT2 BSG CALM1 SYT11 RAPGEF5 TMEM130 ARL6IP5 MAP1LC3B CYFIP2 PPP2CB PPP2CA CLU WASF1 RNF11 CALM2 NPTX1 DPP6 PHYHIP SLC9A6 EGR1 SLC24A2 PPP3CA CADM3 AK5 BASP1 GRIN2A NGFRAP1 OXR1 ZBTB18 TCEAL2 AC244489.1 RP11-219A15.1 SGCD FAM127A MTATP6P1 SRP14 LDB2 KCNV1 NDUFC1 ITM2B PREPL EIF1 MAST3 THYN1 LRRIQ3 LINGO1 CDH8 INHBA SCN1A MGST3 DYNLL1 C2ORF80 PRKCE ATP6V1E2 LMO4 ETV5 GNAQ KIF1A PTPRN DCLK1 CMAS CNTN1 EIF5A2 RAB6B PCSK1N UQCR10 MT-ND4L KLHL5 SARAF CLIP3 HMGCS1 PSAP SLC8A2 TOPORS-AS1 MRAP2 NDFIP2 PTGES3 REEP2 ERH COX4I1 IDH3A RPS2 VAMP1 PLOD2 AURKAIP1 PGRMC1 FAT3 PRNP ITM2C SERINC3 TPPP CDC37 ATP6V1B2 ATP6V1C1 TMEM158 GHITM DKK3 STMN4 GUCY1A3 NCDN MAPRE3 KCNC2 NHP2 CADM2 ARPC4 GAPDH AP1S1 RPL13A SNX10 RPL23A GPX3 UQCRH PPP1CB PNKP MSMO1 MRPS7 CRIP2 TPT1 RPL8 RPS28 HSPBP1 NPM1P30 TMEM65 LPPR4 YWHAB SYN1 REPS2 RPS27A PEPD RASGRF2 SEC61G VSTM2A CHRNA5 RPH3A PLD3 TPD52 HCN2 PPTC7 SRM MAPK1 CCDC25 EDF1 TMOD2 SLC17A6 MT-ND5 PKM UQCRC2 AKAP12 NPTN INPP5F STMN3 SMIM12 BCL11B TMEM258 CHL1 OST4 LAMTOR1 FAM3C NUAK1 DYNLL2 MAL2 PPIA MFSD6 MRPL55 CAMK4 HINT1 TPRG1L MDH1 NCAM2 CSDE1 CLGN FXYD6 ALG3 D4S234E NDUFB10 SLC39A10 PCDH19 FAM84A MAP1B PAM ATP6AP2 SNRPN GSKIP PPP3R1 SLC1A2 MORF4L2 FER1L4 EFR3A CDS1 NEGR1 SV2B CAMKK2 TM6SF1 SULT4A1 COX7B WDR47 MAP2K4 RAB40B CYP2R1 RPL36A TSPAN7 CBX6 NIPA1 GMFB PHYHIPL YWHAZ STMN1 BAI2 ZNF365 PRKAR1B PDGFRA RPL41 GNG3 RCAN2 SLC22A17 MYO1B COX14 TAGLN3 SUMO2 TLN2 COX7C DEXI ATP6AP1 CAPZB ATP5G2 CMTM5 RELN RPL32 ATP2A2 DYNC1I1 SLC30A3 ANO3 UQCRB NKIRAS1 ATP5F1 PSD3 TMA7 EIF4G2 PTMA HSP90AB1 LRP4 MRAS TSPYL4 PRKAR1A ARL6IP1 LINC01296 CLTB POMP SYT5 CYP27A1 MRFAP1 TOMM7 GUK1 UBA52 SLC7A8 CERS6 COL12A1 APBB1 ARF1 IQCK VAMP2 IQSEC1 YDJC SPTBN1 PEX5L WBP2 PRDM8 TMEM141 ATP6V1A ARF5 RPL13 SERF2 EPHB6 ATP6V1G2 CYB5R3 PCDHA4 PCDHA10 PCDHA9 PCDHAC1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MT-CO3 MT-ATP6 SNAP25 MT-ND2 MT-ND1 SLC39A10 MT-ND3 MT-CYB PRNP RTN4 TSPAN7 TF ZNF385D PPP3CA CALM1 PIK3R1 ARHGAP35 AK5 MTATP6P1 LMO3 MT-CO2 ZFAND5 DCLK1 PCDH8 PPIA HSP90AA1 TSPYL1 RP11-111M22.2 SPCS2 GRIN1 NEGR1 RAD23B PKM MTRNR2L12 MT-ND5 ACTB APLP2 RAB3B SYTL2 NR1I3 ARL6IP1 CNTNAP5 PGK1 FAM96B SYN2 SYT13 SV2B CDH13 SEPW1 BDNF HMGCR CD63 PPP3R1 SYT1 PCBP1 PREPL CHL1 C2ORF74 ATP1A3 SCAMP5 ATP6AP1 KCNV1 BIRC5 SPTBN1 ATP1A1 NEUROD2 TCEA2 ATP2B4 RPS12 PINK1 ATP6V1C1 ATRN EVI2A RPL13 KIFAP3 BSG APP CADM2 TOMM20 CLSTN1 FAM163B DIRAS2 HK1 RP11-219A15.1 VAPB CABP1 DPYSL2 PFN2 ZNF208 SCAND1 IPCEF1 PTPRN AES CAPZA2 DPP6 STMN3 MAP1B NPTN CHGB NELL2 CAP2 TMEM35 ELAVL4 NRCAM LDB2 TOLLIP ENC1 HSP90AB1 KCNK1 MT1X THY1 GAPDH TTN PGM2L1 NPTXR PRKCB SLC17A6 LMO4 SLC17A7 CLU NUAK1 KIF21A LRRIQ1 PEBP1 PJA2 MTRNR2L1 UCHL1 PRKD2 NDUFA13 ARF3 PHYHIP YWHAG HMP19 YWHAZ NDRG4 THSD7A TMEM160 CDK17 TMX4 STX1A PSD3 KIF1A TCEB1 PEX5L GLDN NEFH ADAM23 HNRNPA1P40 PLEKHD1 MTRNR2L6 RPL36A PCDHA10 PCDHA9 PCDHAC1 PCDHA4 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 BIRC5 ZNF385D RP11-111M22.2 CABP1 NR1I3 ATP1B1 CALM2 GPM6A CHN1 PRKCB ENC1 SYTL2 CLU RTN4 RTN1 KLC1 SYT11 SEPW1 PTK2B CCK SUMO1 MT-CYB NGFRAP1 TMA7 NFIA SERF2 RTN3 RPL7 TOMM20 FXYD6 TPT1 MT-CO1 CKB OXR1 SUB1 CADM3 ARF5 EPHB6 YWHAH NDUFB2 AC244489.1 OR6D1P HNRNPA1P40 ESCO2 GRIN2A CALM1 TUBA1A OCIAD1 PRKAR1B NPTX2 NRGN CA11 EHD3 GAP43 RAP1GDS1 UBL5 SLC12A5 PPP3CA HSP90AA1 NDUFAF2 HSP90AB1 ITPR2 HS6ST3 MGST3 NRCAM PPP3CB BAI2 RPL10A UQCRQ RELN GDI1 RPS15 ELAVL2 NUTF2 ENO2 CA10 DMTN VPS35 REEP5 BRK1 KCNV1 TMSB4X RASGEF1B CRYM HOMER1 SYT1 PPP2R2C ATP5G3 C1ORF56 NDUFC2 SIRPA CHL1 PSD3 ARL6IP1 THY1 MT-CO3 ARPP19 RPL37A BNIP3 ATP5J RPS3A APLP2 TPD52 RAB6B ATP6V1A PPP1CB RPL31 INA PIN1 TMEM59L KCNA2 RAP1GAP2 DKK3 ATP6V1B2 STMN3 ATRN SCN3B YWHAZ RAB11A BEX2 NDFIP2 OPN3 VDAC2 RASGRF2 NEGR1 PEA15 CNTN1 KCNC3 RPL17-C18ORF32 RPL17 PGM2L1 ATPAF1 STMN1 CAMK4 OPA1 NDUFA1 BEX4 CREG2 APLP1 TMEM144 PPP3R1 COPS8 MPPED1 NCKAP5 MTCH1 CTNNB1 KIF1A LUZP2 MT-ND4L DPYSL2 SPOCK2 TPPP RAPGEF5 DCTN1 ATP6V1C1 NAPB PEBP1 BEX1 NRN1 PLD3 MT-ND3 SH3RF2 RGS8 PET100 AP3S1 PTPRS TENM1 PDGFRB RPS12 SERPINE2 SLC7A1 TRAPPC1 GPNMB LZTS1 ARL6IP5 OLA1 C1QL2 TLE4 ARHGAP35 MYO1B C14ORF2 MT-ND2 TMEM147 TESPA1 FGF12 MDH1 SSTR2 HSPB3 DNAJC5 EDF1 TMEM151A CBX6 THYN1 PGK1 NECAB1 MRPL47 NGRN DCDC1 PRELID1 STUB1 COX6C CYCS IPCEF1 AURKAIP1 NDUFA4L2 RHBDD2 CYFIP2 KCNMB4 OLFM1 BSN ATP1A3 MAP4 UBE2N SLC38A1 CYP26B1 GUK1 ATP6V0E2 VAMP2 CALM3 ACOT7 TMEM150C POLR2I CLTA PRKCE NTNG1 STMN2 DYNLRB1 FAM134A RAMP1 SYNJ1 C1ORF52 SERINC1 CTNND2 DYNLL1 NDUFA11 COX7C PCDH8 ATP5B PVRL1 TPRG1L PNKP UROD GADD45GIP1 OAZ1 CTBP1 ADAMTSL1 NDUFB10 AK5 TMTC4 IGSF21 ITM2B STXBP1 ATP2B2 NDRG3 FXYD7 PPA1 COX4I1 CADM2 CRH RPL26 CCDC74A INPP5F PHPT1 LDB2 MT3 SELT PCDHGA5 IQSEC1 HDLBP ADCYAP1 MORF4L2 ARHGDIA UBA52 RAB3A CSDE1 YWHAQ RANBP1 CYC1 ATP6AP2 MFGE8 RAB2A MT-ND5 SLC25A22 ANO3 MAPRE2 FAIM2 FTH1 PHYHIPL CRIP2 CDC42SE2 PNMA2 BSCL2 BCL11B SLC39A10 EPS15 COL6A1 PEX5L DUSP6 HMGCS1 ACTB LL0XNC01-16G2.1 TMEM155 YWHAB GAPDH SERPINI1 CLIP3 SLC30A3 GNAQ HTR2A LINGO1 TMEM11 CAMK2G NUDT21 LMO3 LMBRD2 SPTBN1 NAP1L3 SARAF LYSMD2 TOLLIP CDH13 HCN1 MYL6B MPC2 CBLN4 SLC38A11 UQCRH HPX NAT8L RAP2A SH3GL2 SCN1A TUBB4B NCDN FKBP4 TOMM7 GHITM UROS FAM96B UQCRB CDK17 RGS4 MRPL33 CEND1 POLR2M CDK5R1 LMO4 AZIN1 RCAN2 TRIB2 SKP1 ATP6AP1 KCNAB2 COL6A6 DDN MAP1LC3A TRPV2 ALDH5A1 PGAM1 NELL2 NPTXR PREPL MIEN1 ADD2 TMEM164 RABAC1 PRKACB AIMP2 PTMA SNCA RPL35 SLC17A7 KCNA1 TSPAN33 PSMB5 MT1X FTL ARL8B PPIA RP11-20I23.1 RNASEK-C17ORF49 ATP6V0C IDS NSF ELMO1 ALDOA RPL41 ATP6V1G2 RPL21 PCDHA4 PCDHA9 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron A", "role": "assistant" } ]

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