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[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MTRNR2L1 MT-CO3 SYT1 SLC6A1 MT-ND4 CCK MTRNR2L12 MT-CO2 SYTL2 RTN4 MT-CO1 GAD1 TSPYL1 ESCO2 KIT HAPLN1 GAD2 KIF21A SARAF MORF4L2 TMSB4X CLTC PREPL NDUFB1 MT-CYB GRIP2 MT-ATP6 EYA4 APLP2 KCNC2 MT-ND3 NFIA NXPH1 B3GALT2 MDGA1 CALM1 PTCHD4 HK1 GRIN2A VPS35 MTRNR2L6 GORASP2 ZBTB20 CAMK2G PEBP1 ATP6V1F RAB3IP RPL17-C18ORF32 MT-ND5 TRPC3 ARL6IP1 SERPINI1 C8ORF4 SCN1A CLU SLC24A2 PRDX5 HSP90AB1 CXCL14 KIF5A SLC9A6 RTN3 TUBB2A PJA2 RASGRF2 RPL3 KCNAB1 UCHL1 RAB6B HSP90AA1 PCDHGA5 MT-ND2 CPLX2 RGS12 CDK14 PNMA2 EGFR CNTN1 SYNPR SV2C NMNAT2 RPL32 APP TMOD2 TMEM59L BIRC5 ARFGAP2 UQCR11 COX8A UQCRB UBC SPRYD3 MFSD6 SNAP91 FGF12 SEZ6L GLO1 CADM3 SDCBP ZNF365 SEZ6L2 PAFAH1B2 BAD ABRACL GUCY1B3 MTATP6P1 CEND1 NDFIP1 WBSCR17 DNAJA1 NEGR1 VCAN NDN CHN1 NDUFA4 NAT8L DYNLL2 DGUOK GAP43 PRDX2 ITM2C PPM1A RPL13 HRH3 RPL41 DYNLT3 RTN1 TP53I11 GNB1 MAP1A EDF1 ARF3 COX7C ATP6V1A VDAC3 MLLT11 SLC6A17 MIEN1 SH3BGRL2 MLF2 EIF4A2 OCIAD1 CSDE1 SSTR2 USMG5 VSTM2L ATRN UBQLN2 CDK5R1 ACTR6 HSPA8 RRS1 COL9A2 BCAT1 FAT1 TOMM70A TSPAN7 GPM6A SLC7A8 DPY19L1 SYN2 ELAVL2 SYT4 SYNGR3 ARHGAP29 EXTL2 FXYD6 DNAJC6 ATP6V0C OXR1 ITGA6 KCNA2 VWA5A TOMM7 IQSEC1 KLC2 DLX6 PLD3 SP9 TRIM37 CDS1 GDI1 D4S234E SPCS2 GABRA1 SLC12A5 TGOLN2 DPP6 NPTXR CST3 FSTL5 METTL7A NECAB1 ZNF101P2 ERBB4 PCBP1 PRKACB APLP1 SCD5 RHOB GRINA RP11-20I23.1 FAM131B RPL13A SYT13 SOX2 KRT17 PRKAR1A TNFAIP8L3 ACSS1 RAB11A CAB39 SLC22A17 ATP6V1B2 SEMA4G BSN GUCY1A3 MAP1B BLOC1S1 MT-ND1 FAIM2 PKM MAP2K4 MYO16 CYFIP2 BCL11B NDUFA1 FTH1 BSG AZIN1 PNKP USP5 PRNP MARCKSL1 CLSTN1 PTMA GPR98 ARL4C UHMK1 NDRG4 SPP1 PNMAL2 NAA38 COX6B1 TDRD7 STMN3 TMEM65 CD24 SYT11 C7ORF50 CFL2 AP3S1 DPYSL2 VDAC1 NDUFB11 PRKCB NXPH2 LANCL1 SSBP3 LMBRD2 SPOCK2 TSC22D1 CTNNB1 ARHGAP35 CRH BAG4 CORT PGK1 RPL21 IDS PFKP BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: DNER SYT1 KIT MTRNR2L1 SCG2 PCDHGA6 SLC6A1 GRIN2A RAB3C CALM3 MT-CO1 RTN3 NDUFB1 PGAM1 RELN SNAP25 ATP1B1 GAD1 HSP90AB1 TF MORF4L2 STMN1 SERPINE2 BSN ATP6V1B2 MTRNR2L6 B3GALT2 COX7A2L SLC6A17 YWHAG SLC9A6 HMGCS1 SLC12A5 NREP ADRA1D FXYD6 C11ORF31 HMP19 ATP1A1 GPM6A PRDX3 GNAQ AP1S1 PIN1 MTCH1 FAM71E1 ARL6IP1 IDS ACTG1 EIF1AX SCN1A APLP2 RPS28 OLA1 MTRNR2L12 GDI1 WDR47 RAB3A GSKIP ERBB4 BCL11B QKI MAP2K1 BNIP3 CHCHD2 ARL8B TMOD2 CNTNAP5 VAMP2 ZNF385D EPHB6 CHL1 UTRN PTMA ELAVL4 UQCRQ RHBDD2 CLPTM1 SST DOCK10 KLC1 RASGRF1 CPNE2 TRPC3 HCN1 TPPP ATP6AP1 PDGFRA ETFB AES NCALD CABP1 PRKCB PCSK1N WLS UBE2E3 EIF4A2 SYT11 SCAMP5 C5ORF63 DPYSL2 BIRC5 PAFAH1B2 STMN2 SERINC1 ITM2B FBXL16 CNRIP1 PJA2 MRFAP1 COX6C MAP1B GAPDH YWHAH NDRG3 PRDX1 LDHB HS6ST2 KCNC2 ALDOC UQCRH NPTXR FABP5 PPP3CB TRIM37 CXCL14 LPPR4 TMEM59L SELT SAP18 VPS35 HMGCR OLFM2 TGOLN2 CLIP3 CYFIP2 KCNIP1 MAP1LC3A CAMK2D PKM NDRG4 MT-ND1 WDR78 DYNLRB1 TUBB2B CRYAB GHITM MT-CO3 LINC01314 SNCB SCD5 SDCBP SYN2 BEX4 S100A6 OAZ1 ATP2A2 MT-CO2 ZNF536 TSC22D1 MLLT11 COX7C UBB APP SPOCK2 VSTM2L B3GNT1 NDUFV1 ARL8A UQCRFS1 RPL17P50 ATP1A3 DKK3 RAP1GDS1 AP1S2 FIGN COL25A1 NDUFC2 TCTE1 STMN3 DNAJC4 SYN1 SSBP3 PREPL ARF5 MPPED1 DYNLL2 PRNP GAD2 LINC00087 TERF2IP CTNNA2 NGRN CDK5 SPP1 ARL6IP5 TMEM230 CDS1 NAP1L3 TCEB1 CERS6 PRPS1 DBNDD1 DNAJB6 CADM2 AKAP12 PGK1 MRAS KCNMB4 GABARAPL1 SYNGR1 TSPYL1 RAB11A NDUFA4 HSPA8 ACLY PACSIN1 TPGS2 NPTN CHMP4B CDK14 PNOC TMX4 CDC42SE2 AP2S1 GJD2 TMEM14A PRKCE GOT1 ATXN10 TUBB3 GABARAP TBC1D15 RAB3B ARFGAP2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ND4 MT-ND2 MT-ATP6 SYT1 MT-CYB MT-CO3 MT-CO1 KIT SNAP25 MT-ND3 DNER CALM1 GRIN2A SLC6A1 FXYD6 SPOCK1 MT-ND1 OR6D1P MTRNR2L1 TSC22D1 HMP19 RELN BCL11B CXCL14 ZNF385D MTRNR2L12 NAT8L INA APP DKK3 MT-ND5 GRIK1 BIRC5 BASP1 CLSTN1 OPA1 MAP4 PRNP ARL4C MAFB HSP90AB1 SRP14 HSP90AA1 SELT THY1 CAP2 PAFAH1B2 RPH3A CADM2 PTCHD4 GDI1 PTPRN ID2 RPS28 CD99L2 NDN TSPYL1 TMSB4X CLSTN2 YWHAB PTPRN2 RTN1 SLC6A17 PKM PTPRT FSTL5 PCSK1N BEX4 PLCB1 RTN3 CCK TPPP MBP MAP1B PNMA2 SCD5 MORF4L1 TMEM130 NDUFB11 IDS MTRNR2L8 CALM3 PLP1 ENSA DNAJB9 SQLE PTPRM CDK17 MGST3 FBXL16 DOCK10 CXXC4 SUB1 PREPL TMSB4XP4 GUCY1B3 APLP1 GNB1 RUNX2 RAB3A PGM2L1 CLIC4 MPC2 MARCKSL1 PPIA APLP2 GAD1 TMA7 SYN1 DNAJA1 MSMO1 PEA15 PSAP SV2C STMN2 TRIM37 SPDL1 KCNC2 SPOCK3 COX6B1 UBQLN2 SLC7A2 TBCA PEG10 TSPYL4 CTSD EIF4G2 CIAPIN1 SERINC3 ATP1A1 PNMAL1 PRKAR1A GPM6A TAGLN3 PPP3CA ATXN10 GRIP2 SUMO1 REPS2 DIRAS3 VDAC2 RPS19BP1 MTATP6P1 LPPR4 WBP2 LIMK1 FAM127A TOX2 ALKBH7 EFR3A PPP2R4 GAD2 PHYHIPL ERBB4 TMTC1 THSD7A EID1 KCNAB1 OCIAD1 CAPZB ELAVL2 KIF21A RAB3IP KCTD12 LUZP2 ROBO2 TOMM7 GRPEL1 PGK1 LINC01314 SNRPN DLX1 CLDND1 PDLIM5 UCHL1 SPOCK2 SLC39A10 TM2D3 PJA2 DNAJC6 DYNLL2 NARS PDGFRA KCNH5 SH3GL2 TNFAIP8L3 CLU ACLY GLO1 GPX4 PLD3 SERPINI1 RP11-111M22.2 NR2F2 RNF208 GSK3A ZFAND5 FAM219A PPP1R7 CYC1 CNTNAP5 SUMO3 HMGCR COPS8 CHRDL1 PEX5L SYT11 SCN2B SLC25A6 PTMA HCN1 BEX2 SARAF SCN1A YWHAG HDAC1 DCTN1 EYA4 YWHAQ NHP2L1 RNF11 NDUFB2 RPL37A SYN2 NDUFA13 KIF3C SCN3B TUBB4B EPB41L3 VAMP2 FTH1 JUND SIRPA BEX1 PEBP1 NDUFA11 ATP6AP2 UQCRC1 DYNLL1 VPS35 ATP5B TMEM59L NRIP3 INSIG1 COX6A1 CPE SELM DPY30 HNRNPH2 FIS1 TUBA1A RAB6C-AS1 ATP6V1C1 CHL1 PPM1A TMEM230 KCNAB3 PLCXD3 RAB3C D4S234E TUBD1 KLC1 RASGRF1 ATP1B1 ZNF536 SULT4A1 ALDOA RP11-219A15.1 RPL6 CFH APOLD1 RPL36A PCDHA9 PCDHA4 PCDHAC1 PCDHA10 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NRIP3 SLC6A1 DNER NR1I3 CCK ITM2B PREPL SLC38A1 TSPYL1 SYNGR1 RP11-219A15.1 SEZ6L2 ESCO2 TBC1D15 DNAJC21 DYDC2 RNA5-8SP6 ATP1B1 AES ATP6V1C1 PRNP RCAN2 CLDN11 CHST11 ALK RAB2A SV2B PCYT2 ARPC4 MTPN RGS12 THY1 TPI1 ZBTB20 DPYSL2 MAF SCAMP5 TMEM144 MRPS21 IDS RAB6A PTPRM CRKL GAD2 EPB41L3 QKI CD99L2 EIF4A2 CALM2 ETV1 UQCR11 CLSTN1 PTCHD4 NMNAT2 MT-ND4 PRDX2 PROX1 SEPT1 TMA7 COX7A2 ATP5A1 ELAVL2 STXBP1 GDI1 MT-CO2 SARAF SERINC1 GNAQ ISOC1 KCNAB1 PCDHGA5 BIRC5 RPL23A FXYD6 SERTM1 CALM1 DNM3 KLHL5 HEG1 PEBP1 YJEFN3 PRKAR1A COL4A3 PPP3CA SLC9A6 PPP2CA DPP6 STMN2 PTMA MRFAP1 PRKCB CDK14 UBE2D2 EYA4 ATP1B2 PLCB1 CDK5R1 ARL8A PREX2 TOX3 CDC42SE2 APLP1 NARS BCL6 PRKCE KIT VEGFA NAPB SSBP3 FAIM2 RTN1 DKK3 CACNG3 PPP2CB SERF2 RPL17-C18ORF32 C18ORF32 TF GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 DNER KIT MTRNR2L1 RTN4 MT-CO2 MT-ND1 DNAJC21 GAD1 SLC6A1 CNTNAP5 MT-CO3 GOLIM4 REEP5 MAP2K4 PRNP ATP1B1 CSDE1 RELN NUDT21 SYTL2 UBE2V2 HMGCS1 RPS5 STMN1P1 AP2M1 STXBP1 OPA1 ATP9A TBC1D7 SNCA PRKCB RAB3C ATP6AP2 CKB ZNF365 GMFG GUCY1B3 CADM2 VSTM2A RPH3A KCNC2 ROBO2 PTPRT RUNX2 MT-CYB RTN1 FSTL5 GOT1 PRKAR1A SLC10A4 APEH NDFIP1 RP11-111M22.2 TRIM36 FIGN SPOCK1 SUMO2 SMIM13 PNKP ACAT2 TOX2 PSMD12 DNAJC5 NGFRAP1 PPP2R2B GABARAPL2 PEX5L CCT5 PTCHD4 VDAC3 PPA1 GAPDH HMGCR MPI LPPR4 MT-CO1 CADM3 MT-ND4 TOMM20 QKI FXYD6 SYNGR1 STMN1 LDHB PSAP C19ORF53 GABRA5 SAP18 ITFG1 PRKACB ITM2B SV2C CALM1 ENSA SSBP3 RHOB DPP6 ACTB CYFIP2 SNCB CTNNB1 CFH SLC9A6 C8ORF4 IGF1 RTN3 DOCK10 CHL1 MAFB ATP2A2 VSNL1 SLC25A48 TBC1D15 ISCA1 TMEM130 ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 ATP1B1 DNER SNAP25 MTRNR2L1 GAPDH CALM2 KIT MT-CO3 SLC6A1 CDH13 MT-CO1 RPL37A TOMM7 RPL32 NDUFA4 ARL6IP1 PEBP1 HSP90AA1 SYTL2 RAB3B MT-ND1 RPL26 PTMA RPL21 EIF1B EIF4A2 NDUFS5 COX4I1 CCK TMSB10 RPL38 TPT1 RPL13 CD99L2 TMA7 GRIN1 PSMA7 TMOD2 RTN1 STMN1 CDK14 CXCL14 GRIN2A SCN1A PTCHD4 MTRNR2L6 H2AFZ CEND1 MT-ND2 NAP1L3 KLC1 MT-CO2 PREPL SERINC1 MT-ND3 NXPH2 NDRG4 BNIP3 PDGFRA ATP1A1 TSC22D1 TSPAN7 ATP2B2 RPL6 DIRAS1 CORT GAD2 ZNF385D RPS27A GABARAPL2 LINGO1 BSG RPL13A BTBD11 NDUFB4 KCNIP1 MAP1B RAB3IP EIF1AX PCMT1 SPRYD3 ATP1A3 RAB3C RPL7 STMN2 SRP14 FXYD6 DNAJC5 COX14 CKB COX6B1 IDI1 CALM3 NGRN CRH RPS28 RPL41 MPPED1 COX6C GABRA1 PFDN4 PRKCE NSF PGK1 ATP2A2 RPL31 NAPB UQCRH APLP2 PIN1 PRKACB SPOCK2 PLD3 PTPRN2 RPS15 C19ORF53 SUMO1 FAIM2 RTN3 RPS2 TUBA1B ACTB HIGD1A ATP6V1E1 CYCS WDR47 NOP10 TMSB4X ENO2 CADM2 ARF5 RTN4 BEX1 ADARB2 SYT11 AP1S2 CAMK2G CRYAB MRPL51 PPIA MORF4L1 MT-ND4 HMGCS1 RAB6A C14ORF2 ARHGAP35 GDI1 TGOLN2 ATP5H CRKL RPS6 UQCRB CALM1 SPOCK1 AP2M1 SLC1A2 GUCY1B3 COX7C RP11-20I23.1 RPL36A IDS ATP6V0C MIF ARFGAP2 ARL6IP5 PCP4L1 CLTC WASL UBL5 UBA52 STRAP SYNGR1 PSAP KCNC2 PNMA2 COX5B SPON1 KCNA2 PNKP GRIK1 NDUFC2 HPCA NDUFB3 HOMER1 TOMM20 KLHDC3 SNRPN HS6ST2 DYNLL2 MIEN1 LAMP5 RNF208 KIF21A BSCL2 PRNP PPP2R1A FTL ATP6V1B2 BAG4 NDFIP1 PPP2CA MZT1 PROX1 QKI IGF1 RPL35 ALS2CR12 PKM MAP7D1 NDUFC1 ISCU SYN1 FAM96B GPR98 NBL1 UQCRC1 BCL11B DPY30 TERF2IP SLC10A4 FABP7 SCN2B ELAVL2 TMX4 AP3S1 SLC9A6 PPM1A WBP2 FAM174A NDUFB10 TMEM120A NPY2R ITM2C NXPH1 CHRDL1 PTPRM HSPA4 HNRNPH2 CHN1 RP11-632C17__A.1 SULT4A1 BAD RPL12 CPLX3 EIF1 TSPYL4 PPP2R2C PNKD NDUFB7 PAM DYNLRB1 SOX2 NAT8L YWHAH ATXN10 SARAF VAMP2 GRIN3A ACLY SV2C C1QL2 SNCB ATOX1 GPR158 NECAB1 SNAP91 CNRIP1 SCD5 ATP1B2 PIK3R1 SLC25A6 SCN1B PITHD1 TIMP2 ADD2 KLC2 ARL4C UBL4A MAFB COPE FAM134A MTUS1 NDUFA13 NDUFA2 GAD1 NDUFS6 ITFG1 KCNAB1 STXBP1 ATP5O ARHGAP29 HGFAC DOCK10 NCOA4 DIRAS2 LMBRD2 TMEM35 ARF3 JUNB MLLT11 EDIL3 TUBB4A SLC12A5 PFN2 MDH1 ATP6AP1 HMGCR CLSTN1 VSTM2L LYNX1 GADD45GIP1 GNG3 ATP6V1C1 MYL12B NEGR1 PNMA1 TUBA1A TNFAIP8L3 KCNC3 SRM S100A6 MT-ATP6 VPS35 IGFBP5 ALDH5A1 SLC8A2 HSP90AB1 SPTBN1 MAF PPP3R1 DYNLL1 SCOC FIBP UBB TAGLN3 ANAPC11 HCN1 CADM3 DPF3 BEX2 ATP6V1F DPP6 DKK3 ANXA6 TBCB WLS PET100 YJEFN3 NGFRAP1 CTSD UQCR10 ANXA7 ACTG1 PFDN1 PPA1 TPI1 OPCML UBE2N PRDX3 VAPB OR6D1P ALDOC SKP1 ERH COX6A1 FSTL5 SLC25A22 BEX4 UROD ATP5C1 CNTN1 GOT1 PIP5K1B ITM2B RAP1GAP2 COX5A SOD1 GPX4 BASP1 NPTXR ENC1 SYNPR PLCD1 OXR1 NAP1L2 TCEAL5 SUB1 OPN3 C2ORF74 RAB37 FBXO2 RPS3A RP11-111M22.2 RPL11 PEX5L SH3BGRL2 PSMC5 VDAC2 LDOC1 ATP5B RPS4X ETFB ASCL1 CHL1 PSMC3 RAB27B DNAJC6 CST3 WASF1 HMP19 CA2 B3GNT1 CMPK1 GPM6A HAPLN1 ARL2BP MAP1LC3A SGCZ VSNL1 PHYHIPL LINC01314 ATPAF1 CHGB MFN2 FAM3C RAB7A B3GALT2 MZT2B DAW1 NKIRAS1 ATP6AP2 VAMP1 RAB3A DPY19L1 SH3BGRL3 GNB1 LGI2 ACTR1A MORF4L2 QDPR ITPR2 PPP2CB CDS1 REEP5 PDK4 AK5 MRPL52 ATP6V0B MAPK1 CFL1 PITPNA DHCR24 PTPRN PEG10 ACOT7 MRPL33 NDUFA12 CLSTN2 RPL17-C18ORF32 BIRC5 ALDOA UQCR11 SERF2 RPL3 C18ORF32 AC244489.1 PCDHA10 PCDHA4 PCDHA9 PCDHAC1 PCDHGA6 PCDHGA5 PCDHGA10 CFH HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 SYT1 KIT ATP1B1 DNER MT-CO1 CKB PRNP RAB3B CALM1 SNAP25 CCK RPS15 ARL6IP1 APLP2 SLC6A1 RAB6A NAPB TERF2IP DPYSL2 GAD2 PDP1 STMN1 GAD1 PRKCB ATP6V0C HSP90AA1 RTN1 TMA7 AP2M1 ITM2B SPOCK1 KIF1A DPP6 RP11-20I23.1 CXCL14 FAIM2 MT-CO2 ATP1A3 THY1 RPL13 ATP6AP2 CNTN1 RAB3C CALM2 GAPDH DYNLL1 SERF2 APLP1 VSNL1 EIF4A2 ATP1A1 CAP2 UBB PJA2 UQCRH KCNC2 HMP19 ACTB PGAM1 NRCAM SV2C FAM174A CLIP3 MAFB TUBB4A RPL13A TMSB10 ATP2A2 CDH13 SCN1A SNCB MT-ND4 CALM3 KAL1 TSC22D1 KLC1 RPL41 PREPL UBA1 ATP5F1 RPL32 TMX4 C14ORF2 ATP1B2 STMN3 YWHAG SCG2 GRIN2A KIF5A NDUFC2 ACTG1 ISCA1 WBP2 KCNAB1 APP ID2 OLFM2 RTN4 CHN1 SELT VAMP2 SRM ATP5I SERINC1 RPS12 BCL11B ATP6V1F MAP2K1 CPLX3 UBE2V2 FTL ATP6V0E2 MAP1A TMEM59L COX6B1 SAMD3 NDUFA4 RAB1A PPIA CLSTN1 PFN1 SERPINI1 TSPYL1 EGFR CREG2 PEBP1 DCTN1 TUBB2A NDN CEND1 ARPP19 INPP5F PRKACB CADM2 DNM3 FTH1 STMN1P1 PPP3CB DKK3 RLIM PLD3 RTN3 SNRPN STXBP1 GPM6A KCNH5 CA11 TOX2 EFR3A ACTR10 ATP5E PTPRT PMEPA1 MT-CO3 AP1S2 HIGD1A YWHAQ PLCB1 CLU PKM SLC12A5 BRK1 RPL18A CLTC C4ORF3 DDR2 HMGCR RPS6 PITHD1 SLC38A1 TUBA1B NDRG4 SEPW1 NXPH2 CDS1 FGF12 ARL8A PSMA7 CCDC85B GABRA1 JAKMIP1 H2AFZ SYNPR MPI PPP2R1A MTRNR2L12 NPNT ROBO2 DIRAS2 FAM43B EIF4G2 KRAS ARF1 MRPL52 SLC22A17 CDC42SE2 STRAP ZFAND4 HSPB8 PSMC3 LDOC1 RAN MTRNR2L1 PGRMC1 CRYAB FIGN FXYD6 THOC7 DNAJC4 NPTN FASN NMNAT2 C12ORF57 TKT RPL11 RPL26L1 PCBP1 VDAC1 COX7C KCNIP1 RPL37A SLC7A8 BSCL2 LAMTOR5 RELL2 AP2B1 COX17 CLPTM1 NBL1 NDRG3 ASAP1 TOMM70A ISCU GRIK1 TMEM160 AP3S1 DDAH1 PDE1C COX7A2 STMN4 DNAJB9 ATP9A COX8A ALDOA RABAC1 RPL35 TOLLIP C9ORF16 LMBRD2 JUND TOX3 DSTN HPRT1 LPPR4 CNRIP1 POLR2I VAPB EPHA6 CACNG3 ZBTB20 SLC8A2 MAP2K4 PTPRN GPR158 SYN1 DYNC1I1 PID1 C18ORF32 RFK CIAPIN1 ERBB4 RORB RAB3IP PSENEN NEGR1 TUBD1 ATP5G2 SNX3 MAP1B THYN1 SEZ6L2 EIF1 SLIT1 FAM43A POLR2L TRPC3 PPP3CA DNAJC5 ENO2 RBX1 MDH1 MZT1 TCEA2 MT1X LCP2 NDUFA12 VAT1L CPLX1 MT-ATP6 CTC-575D19.1 CLIP2 COX6A1 TPI1 ATP6AP1 GPRC5B SHARPIN SPOCK2 POLR2J TBCA PTPN20A KIF21A PLIN2 ABRACL PRDX2 SCAND1 TMEM258 ATP5G3 PCP4L1 PGK1 GRINA SYT11 SPRYD3 RHOB NCDN MZT2B DYNLRB1 RGS12 SNRNP25 TMSB4X MAPRE2 SYNGR1 NDUFS5 PHYHIPL MARCKSL1 ITFG1 ARL6IP5 ATP6V1B2 COX5A OXCT1 MBP COX5B NHP2L1 BTBD1 RPS28 PPP2R4 TBC1D7 NPTXR PTPRN2 HINT1 KCNAB3 TCEB2 ATP6V0D1 RGS8 EPS15 GNAQ FGFR3 CITED2 ANK1 MLC1 CRYM FAM127A HAPLN1 SRP14 YWHAZ ZFAND5 GUK1 PSAP MAF VDAC2 TEX2 OCIAD1 SERPINE2 TMEM130 NDUFB11 PFN2 PPDPF PACSIN1 OXR1 MAOB CMPK1 MAPK8IP2 ARHGAP35 RAB3A YWHAH SSTR2 PPM1A NDUFB2 CHST11 KIF3C AK5 HCN1 BAG4 RP11-111M22.2 MTRNR2L8 ARF5 MYL6 NTNG1 SRP9 GOT1 MRPS21 APOL6 CCDC25 CDK17 STMN2 SLC25A11 RPL23A ATP6V1A FNDC4 CRH TOMM7 ATP5B RPS5 CTSD RRM2B MORF4L1 WBSCR17 RPS3A LANCL1 ATP5C1 C1ORF52 NDUFA13 SLC25A5 PROX1 PTMA ADSS UHMK1 NECAB1 LDHB RAB5C ARL4C NDUFA1 MAST3 ATP11C GLO1 RPL38 RPL31 REPS2 NDUFB3 C11ORF31 BASP1 MPC2 PRKAR1A PTCHD4 MGST3 B2M RPL21 GABARAP MBOAT7 AC244489.1 PCDHGA10 PCDHGA5 PCDHGA6 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 SYT1 MT-ND4 KIT ATP1B1 SLC6A1 MT-ND3 MT-ATP6 MT-CO2 MT-ND1 MTRNR2L1 MT-CYB ACTB CALM2 DNER RTN4 MTATP6P1 EIF4A2 RAB3C PTCHD4 GAPDH MT-ND2 ATP6V1B2 PJA2 RTN3 APLP2 PLCXD3 SNAP25 ATP1A3 ARL6IP1 PRNP PPP2R1A FXYD6 EID1 CALM3 PKM DPP6 SERINC1 SCN1A GRIN1 PLCB1 APP NGFRAP1 PHYHIPL PRKACB KIFAP3 MBP CDH13 CPLX2 KCNC2 HIGD1A PNMA2 SYN2 BCL11B PEBP1 NXPH2 SLC38A1 PREPL CADM2 PGRMC1 CNTN1 FAIM2 PCSK1N TSPAN7 LGI3 TF TOX2 AES AP2B1 RTN1 GABARAPL1 GRIN2A PID1 PCDHB10 KIF3C ZNF536 SH3BGRL2 PDP1 HK1 SNAP91 VSTM2L CERS6 RPL38 KIF21A DKK3 NUDT4 FGF12 DPYSL2 LINC00087 CYCS RPS28 MTPN PSMC3 CXCL14 PCP4L1 ARF1 ZNF385D PSAP CCDC25 YWHAG SLC22A17 MAP7D1 SERINC3 SOD1 ARX SLC10A4 TUBB2A IGF1 MTRNR2L6 GAD2 CLDND1 MAP1A OPA1 DUSP4 SPOCK1 NDRG4 VSNL1 MAPK1 THY1 RP11-219A15.1 ARL6IP5 BSG UBA1 HSP90AB1 PRKCE ATP6V1C1 SCOC PPP3CA NFIA CKB SV2C GNB1 TBC1D15 RAB11FIP5 KITLG CRH RPL36A OAZ1 GLUL CPLX1 RPL15 TUBB4A DGUOK ACP1 PPP2CB MRFAP1 ERBB4 CAB39 COPE NCDN ENO2 MAFB VDAC1 CNR1 HSPA8 DUSP1 ARL8B RNF11 TRPC3 ID2 CCDC115 MIEN1 C1QBP CTNND2 NDUFA1 KLHDC3 DLX6 GPCPD1 GABPB1 TSPYL1 CTSD SFRP1 FBXW11 NAP1L3 SYT4 DNAJB6 PPIA NDUFB5 SLC25A4 BAI2 OXR1 TERF2IP MAP1LC3B CHMP5 ETV1 CALM1 ABHD14A TUBB CYFIP2 PCBP1 WDR47 SUMO3 NPTN TCEAL7 YWHAQ MFN2 DNAJA1 ATP6V0C REEP2 FAM174A TUBA1B FAT1 EFR3A PHB BRICD5 NCOA4 HRH3 BASP1 NAPB FBXL16 DYNLL2 DNAJB9 RLIM NECAB1 ASCL1 SPTBN1 RPS27A SYN1 NRAS THOC7 GAD1 MTCH1 CETN2 ESCO2 GRINA SKP1 MORF4L2 IQSEC1 STXBP1 CDC42SE2 VAMP2 CBLN4 PNMAL2 NDUFS5 TPT1 NRSN2 YWHAH AK5 GABARAPL2 MDH1 EFHD2 HSPA4 MAF QDPR SSTR2 SPOCK2 RASGRF1 SYNGR1 PIP5K1B SLC12A5 MTX3 FAM131B ACTG1 ZBTB20 CAP2 HCN2 CFL1 ATP1A1 NAP1L2 LUZP2 RREB1 OXCT1 ARHGDIA MGST3 FSTL5 PPP1R7 EXTL2 PTMA PVRL1 RP11-20I23.1 NAP1L5 UBE2L6 C7ORF50 LAMTOR5 RHEB ALDH5A1 SNX10 MSMO1 SLC8A2 RAB5C PFDN4 EEF1A2 KLC1 SH3RF1 VPS35 TGOLN2 CACNA2D2 ATP6AP1 PPP2R2B ISCA1 KIF5A SPHKAP NAT8L PPP2R4 RPL37A GOT2 SRP9 MPPED1 HAPLN1 RASGRP1 MT-ND4L SRP54-AS1 RAB6A AP2S1 YWHAB WBP2 NDUFA2 PTPRT IL12A UCHL1 CDK14 CLTA SLC6A17 RPL35 RAD23B PGM2L1 FAM219A ANAPC13 RAB3IP PFN1 PAFAH1B2 SDCBP MPI HS6ST2 DYNLRB1 MTRNR2L8 SDHAF1 WASL RCAN2 MARCKSL1 NMNAT2 MAP4 HAPLN4 MTRNR2L12 CITED2 EIF1B SCN4B AP1S2 ITM2C SCAMP5 SRP14 KCNAB1 STMN1 TSC22D1 CDK5R1 OCIAD1 CRKL KMO TMTC1 ATP9A ATP6V0D1 FTH1 GDI1 RAB4A MORF4L1 PTPRS RPL11 UBE2N MDH2 CXXC4 PRKAR1B TCEB1 RP11-111M22.2 FIGN SNCB NRIP3 COX7A2 ARL4C RPL41 TMEM258 SUB1 CCK KLC2 RPL31 GOLIM4 ISCU ITFG1 GPM6A LIMK1 KCNIP1 CLU RPL21 RPL3 NSF CFH BSCL2 IDS MBOAT7 PCDHAC1 PCDHA10 PCDHA4 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO2 MTRNR2L1 MT-CO1 MT-ND3 MT-ND2 MTRNR2L12 SYT1 PREPL GAPDH GAD2 MTRNR2L6 TUBA1A OR6D1P GUCY1B3 C18ORF32 GPM6A SLC9A6 MT-ATP6 PSMB5 PPIA NAP1L3 EYA4 TSPYL1 NXPH1 APLP2 NDUFA8 PTCHD4 KCNAB1 LINC01314 MBOAT7 KIF5A HSP90AA1 RTN3 MAPRE2 PLCB1 RFK CPLX2 RAB3IP PRUNE2 PJA2 ELAVL2 PFDN1 TOX MT-ND1 TMTC1 BEX1 RPL15 NDFIP1 SYNGR1 PCMT1 EDF1 EID1 ATP1B1 CNP ATP6V1E1 SSBP3 TBCB COPS7A PEG10 STX1B GABARAPL1 ACTG1 SMIM13 PREX2 SFRP1 HIGD1A SLC6A1 PPP2R1A ATP1A3 CYFIP2 EIF1 MT-CYB SCN3B TMEM132D BSG STMN3 QKI MAP4 CLU ADD2 CAMK2N2 PHYHIP NDRG4 ATP6V1G1 ELAVL4 RTN1 TMEM230 DNER ZNF385D ELMO1 SARAF COX6A1 NTNG1 NEK7 SKP1 TOMM20 MTRNR2L8 CHP1 SNAP91 PKM NDUFV1 RUNX2 AP1S2 MAF SPOCK1 SYT11 REEP2 RAB3B SYTL2 CFH NGRN IDS NSF HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 TBC1D15 MT-ND4 KIT SERINC1 SYT1 SNAP25 MT-CO1 MT-ND3 DNER EIF4A2 SLC6A1 PLCB1 CALM1 PEBP1 CBLN4 PREPL SCG2 PSAP ARL4C SKP1 GAPDH NECAB1 MT-ND2 FXYD6 ACTB RPS28 ALDOC RAB3C CALM2 MT-ND1 CLIP3 APP MT-ATP6 PRKCE CTBP1 STXBP1 NAP1L2 MORF4L1 SLC7A2 ATP1B1 GRIN3A COX6B1 CXCL14 GDI1 NAP1L3 MT-CO2 THY1 TSPYL1 ATP5E RAB2A CDH13 INPP5F HK1 PRNP PPIA ZNF536 RAB6B BCL11B TRMT112 DPYSL2 HMP19 SLC7A8 PLCXD3 APBB1 MT-CYB TSPAN7 TMOD2 NAT8L SLC24A2 PCSK1N FAM174A ATP6AP2 KCNAB1 COX4I1 CSDE1 ATP9A MPPED1 NDUFA11 RCAN2 SCOC RPS4X PPP2R1A SOD1 LINC00087 GABRA1 MLLT11 TSC22D1 GAD2 CADM2 SUMO2 WASL KCNIP1 MTRNR2L12 DKK3 PJA2 ZBTB20 OXR1 ATP5I GRIN1 FASN APLP2 MDH1 FSTL5 PROX1 PDE1C SSBP3 ZNF385D VSNL1 SCD5 TERF2IP RNASEK-C17ORF49 TEX2 ELAVL2 FTH1 MT3 RTN3 SNN FAIM2 PITHD1 SPOCK2 AC011043.1 SPOCK1 CHMP5 NDFIP2 COX6C ATP1B2 CHGB GRINA ERBB4 RPL41 PEX5L SLC17A8 STMN1 MTRNR2L1 DNAJC6 CTSD RGS16 CAMK2N2 NDFIP1 PLCXD2 PGRMC1 ANXA7 RPL13 PTMA NDUFB11 SPHKAP DIRAS1 NKIRAS1 DDAH1 BTBD11 SP8 SCAND1 ZFAND5 TGOLN2 MRPL20 CDK14 CFL1 CHP1 ITM2B ATP1A1 MORF4L2 SYN2 CLTC EIF4G2 MRPS21 PRSS3 MTRNR2L8 UCHL1 ACLY ELAVL4 KLHDC3 NAPB EGR1 C9ORF16 RTN4 SRM ATP6V1B2 TUBA1B SMIM13 BASP1 CNR1 AP2M1 LZTS1 MDGA1 CKB RPL31 MYRIP TOMM70A CLSTN1 TOX2 PCDH17 RBX1 DCLK1 GRIN2A NAP1L5 TRIB2 CAMK2G KCNC2 HSP90AA1 YWHAZ SYT13 NCDN GPR158 PAM CAPZB HNRNPH2 EYA4 BEND5 RAB4A GOLIM4 DPP6 RAB11FIP5 MTATP6P1 PCDHB11 BMP3 GOT1 MAOB LANCL1 ARX NRIP3 ARPC4 RPL37A BSN PPP2R4 COPRS YWHAG NDUFAB1 GDE1 BEX2 C14ORF2 ERH UQCRB SYN1 DNAJB9 RPL35 ATP1A3 RAB5C RPS5 PTPRS SPTBN1 PSMD12 GPX1 ZBTB18 SNCB APOL6 SPRYD3 RTN1 CLU CREG2 CALM3 PPDPF NDUFV1 RPL38 NDUFS5 PPP3CB AP1S2 COA3 PRKCB PEA15 PINK1 TM2D3 PPIF PSMA7 NRCAM UQCRH PMEPA1 CA11 ALDH5A1 TSPYL4 EHD3 ACTR1A BSCL2 SARAF RAB3A ACOT7 NPTXR CIAPIN1 RPL7 NDUFA13 MANBAL BSG TXN UBB UBE2V2 CLDND2 SLC9A6 NAA38 ARF1 SNAP91 NDUFB1 ARL8A NFE2L1 IGF1 ARL6IP1 GAD1 TMEM59L TOX3 OLFM1 GLO1 CACNG6 CAMKK2 NUDT21 KIF21A VCAN YWHAH CORO2B OPCML PTPRM TMEM130 FBXL15 CERS6 B3GALT2 GHITM SH3BGRL3 GRIP2 PPP2R2B BCAP31 AP2S1 FGF12 RPL32 COL5A2 SUMO3 ZNF365 PITPNA YBEY TMSB4X TAGLN3 INA TCEAL7 SSTR2 BEX1 OAZ1 TMX4 COX7B UBL4A NPTN RGS4 YWHAQ KLC1 IDS SLC1A2 CPLX3 MRPL12 DUSP4 MARCKSL1 KLHL12 CHN1 OAT PPA1 DSTN SCAMP5 HSP90AB1 CTNND2 RPL26 GDA SELT DYNLL1 CEND1 GPM6A ATP6V1F NSF SMAP2 PRKACB PHYHIPL SAP18 PNMA2 VAMP1 RGS12 WDR47 SCN1A DNAJA1 NHP2L1 PPM1A JUND SEZ6L2 CAP2 HNRNPA1P40 ALDOA NGRN PGM2L1 RP11-219A15.1 ATP6V0C SERF2 RP11-20I23.1 RPS3A ATP6V1G2 RPS2 PCDHA4 PCDHA10 PCDHA9 PCDHAC1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 SNAP25 MT-ND4 PNMA2 SLC6A1 MT-CO1 KIT NAP1L3 CDK14 PGRMC1 PREPL MT-CO3 FSTL5 PRNP MTRNR2L1 NR1I3 ARL6IP1 GRIK1 MT-CO2 PTPRT MT-CYB REEP5 CALM1 ATP1A1 SYT11 CLU MT-ATP6 MT-ND2 CPLX2 CCK GAD1 HMGCR PPIA ERBB4 SPOCK2 ISCA1 CADM2 ATP1B1 HMP19 GAPDH RPS15 RTN1 RAB3B SYTL2 ZNF385D APLP2 CBLN4 NGFRAP1 RPL26 SNAPC5 DYNC1I1 RAB3C NDFIP1 TOMM20 TSPYL1 NIPA1 SLC9A6 ARL8B RPS2 NPAS3 RTN4 YWHAB PTPRM CTNND2 ITM2B FRMD4B VAMP2 KIAA1211 UHMK1 TUBA1A GPR158 TUBA1B GRIN2A ARL6IP5 HSP90AA1 TPI1 LHFPL3 GADD45GIP1 EPB41L3 ATP6V0B NDUFA4 YWHAH SCN1A MORF4L1 EIF4A2 NDUFA5 VDAC2 ATP6V0E2 SYT1 BEX5 SYN2 RPL38 RP11-357G3.2 GPM6A CALM2 CFH MTRNR2L12 TIMP2 THY1 MLF2 CDC42SE2 GRINA NRCAM NDUFB1 CALM3 KITLG PVRL2 BSG MDH1 ID2 AP1S2 MTATP6P1 PCDHA10 C11ORF31 PLP1 MT-ND4L KAL1 NDUFS6 RNF11 CAP2 PTCHD4 VDAC1 PFKP STMN3 ACTB SCD5 TMEM130 TMEM230 MPI INSIG1 NXPH2 PNMA1 C19ORF10 RHEB TPPP GRIN3A RASSF8 TSPAN7 REPS2 PPP2R1A IDS DNER MYO16 SIRPA PPM1A SYNGR3 MTRNR2L8 DYNLL1 ATP2A2 TOX2 RHOB ARHGDIG ELAVL4 RPL13 YAF2 ALS2CR12 LMBRD2 SLC24A2 ALDOC NDUFB8 RPL36A CAMK2G GNAQ SLC25A6 APP PREX2 PRUNE2 CA2 GTF3A PKM YWHAZ PRKACB MTRNR2L6 NAP1L2 AP3S1 FBXL16 SERINC1 TERF2IP POLR2K VSTM2L DPYSL2 GNB1 ARHGAP35 VWC2L UBE2E3 PTMA CTBP1 ABRACL RAB3IP MT-ND3 B2M RP11-219A15.1 ALDOA AC244489.1 RPL17 RPL17-C18ORF32 GTF2H2C_2 RPL7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 CXCL14 MTRNR2L1 KIF21A SLC6A1 SERINC1 GPM6A FXYD6 MT-CO1 COL5A2 ERBB4 MTRNR2L12 RAB3B PRNP PTMA PTPRS DDR2 MT-ATP6 MT-ND3 MT-ND4 GRIN2A DNER TRIM36 MT-CO2 TF TOMM7 RELN PPM1A KCNC2 DNAJC21 MTRNR2L6 MTRNR2L8 NR1I3 CA11 RPS4X SUB1 TMX4 PHYHIP RPL13 MRPL33 MORF4L2 LPPR4 FSTL5 SCG2 ATP1A3 MT-CYB CALM1 UTRN ARL1 NPTXR LUZP2 NDRG4 PPP3CA ZNF343 TMEM158 SLC38A1 NDUFA13 MT-ND2 NDNF PLCB1 NAT8L RTN4 THY1 FBXO2 TSPYL1 CDH8 GRAMD3 PREPL ZFAND5 CYCS RHBDD2 RTN3 TMSB10 PEX5L DCTN1 SLC1A2 SYPL1 ATP1B2 ATP1B1 SMS SEPT4 SCD5 COPE ALDH5A1 GRIK1 COX5B SYNJ1 NCAM2 PPP2R1A GRIN1 ATP6AP1 NDFIP1 CLU ADAM23 ARL8B RTN1 HSPE1 BAI2 EPHB6 ADARB2 VCAN RAP1GDS1 HSP90AB1 RPL11 SLC7A8 RP11-111M22.2 RCAN2 HCN1 CERS6 SERPINE2 CABP1 GABRA1 ATP6V0C RAB6B TUBA1A SPOCK3 LANCL1 SPTBN1 FAM134A ITM2B NHP2L1 ACOT7 TIMP3 RAB27B TMEM120A BCL11B MORF4L1 GAD1 DCC DYNLL1 PPP3R1 RP11-20I23.1 EFR3A EIF4A2 ATP9A OCIAD1 RPL17-C18ORF32 RPL17 NSF RPS28 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MTRNR2L12 MT-CO1 MT-ND4 MT-CO3 ATP1B1 DNER SYT1 GAD2 MT-CYB TBC1D15 MTRNR2L6 SLC6A1 CXCL14 MT-ND2 PREPL MT-ND4L MT-ND5 SNAP25 ATP1A1 MT-ND1 RP11-111M22.2 MT-ATP6 PTCHD4 BCL11B CALM1 FXYD6 ZNF385D RAB3B SYTL2 SULT4A1 MT-CO2 TMEM147 NAP1L3 MT-ND3 CPLX3 OLFM2 NFIA PHYHIPL CADM3 VAMP2 CNTN1 PKM ID2 NFE2L1 RAB3IP HSP90AB1 LPPR4 GAPDH TCEA2 PEBP1 ATP6AP1 KIT TOMM20 RPS15 SLC1A2 RPL13 GAD1 TMOD2 STMN2 ATP6V1A PRKACB PDP1 SCN1A SEC61G RPS27A SLC38A1 ANKRD20A11P ATP11C EIF4A2 LGI3 LUZP2 TXN CCT5 RPL26 ATP6V1G1 UQCRH ATP1A3 TUBA4A CLIP3 TSPAN7 TMEM160 NGFRAP1 TOX2 EFR3A STX1B DDN CTNNB1 TGOLN2 REEP5 CEND1 YWHAZ ATP6V0B GPX4 RASGRF1 ASCL1 HILPDA SERINC3 VDAC2 UBE2QL1 OCIAD1 APLP2 MTRNR2L8 ARF3 RAB6A MT3 TCEAL2 COL4A3 SLC22A17 PRKCE VSTM2A GOLIM4 ENO1 SYN2 PLSCR1 VDAC1 SEZ6L2 BEX2 TBR1 KITLG RPL38 ATP5B DPP6 DCLK1 ERH VCAN AES CTNNA2 ITM2B CDK17 RTN3 CNTNAP5 CADM2 CDH13 TCEAL7 SNX10 GDA DLD SNN KCNIP1 IGF1 GABRA1 BAG4 C1ORF52 B2M CDHR1 KCNC2 UBA52 GABRA5 RPS10 MTG1 PTPRS STXBP1 KIFAP3 MFN2 FAM127A C1QBP RTN4 MAP7D1 SEMA4G GOT2 UQCR11 ZNF536 DYNLRB1 SPDL1 NCALD CLPTM1 CLSTN1 TSPYL4 DNAJB6 PPARGC1A TUSC2 TPRG1L KCNAB2 VEGFA JOSD2 S100A6 CTNND2 OAZ1 SRP14 MTX3 KCNAB1 MLLT11 MRPL20 MTATP6P1 CAPZA2 CAPNS1 PPP2CA ITFG1 SYNGR1 PCDHGA6 RASGRF2 EIF1B ARL6IP5 GSTT1 FBXW11 MTUS1 NPTXR PRKCB WSB2 COX7C HSP90AA1 ATP2B2 ERBB4 SPI1 ADARB2 IDS UROD PIK3R1 ARL8B TMSB4X TMEM132D GPM6A ACTG1 SCN2B EIF4G2 PRUNE2 RPL31 GRIP2 PMEPA1 MTCH1 COX7A1 CLU CALM2 NPTN GABARAPL1 PTMA SNRPN GRIN3A SYT10 SLITRK1 MYL12B ARHGDIA RPS12 APLP1 PI4KA NDUFAF3 SCN1B SGCZ COX5B KCNA2 ATP2A2 RPL37A PRNP FBXL16 CD63 ARL4C CAMK2N2 APP ARF1 RAB2A SRM PCDHA10 GLO1 FTL PPIA C8ORF4 LZTS1 HCN1 DLX1 TPGS2 ARFGAP2 NDUFA13 NSF RP11-219A15.1 SLC26A10 NIPA1 CTC-575D19.1 RPL7 AC244489.1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SYT1 KIT SNAP25 MT-ND2 DNER SLC6A1 MT-CO3 ELAVL2 RPL37A MTRNR2L6 MT-CO1 MT-ATP6 MT-CO2 CDK5R1 SCN1A MTATP6P1 RAB9A RTN3 PGD SARAF UBE2D2 PCDHGA5 RAB3C NDFIP1 CALM1 GABRA1 SERPINI1 GRIN2A PLCB1 MT-CYB ATP1B1 CNTROB PRKCB GPM6A GRIK1 BIRC5 CTNNB1 KIF21A SYTL2 RAB3B SUCLA2 EID1 LANCL1 CFH VSNL1 ARL6IP5 GOT1 CDC42SE2 ERBB4 THY1 CCK CAMK2N2 SNRPN JUND RASGRF1 YWHAH INSIG1 CSDE1 OLFM1 GLUL TMOD2 AP2M1 PKM GABARAPL2 SLC24A2 CALM2 YWHAB NRIP3 PTK2B DNAJB6 PRKACB STMN1 APBB1 DPP6 ATP11C FSTL5 CDH13 YWHAZ RPS28 LCP2 SPOCK1 KCNH5 ATP1A1 CX3CL1 PHYHIPL EFR3A RPL11 CPLX2 SAP18 ATP1A3 TSPAN7 MAP1LC3B CDK14 B3GALT2 RTN4 RSL24D1 TEFM UBE2V2 ITM2B SYT11 USMG5 FAIM2 KAL1 ELAVL4 NCOA4 UQCRB SLC25A4 SQLE NFIA RAB40B SLC22A17 SERINC3 EFHD2 LMBR1 TCEAL3 TERF2IP ITFG1 SLC38A1 BSN STMN2 FXYD6 SERP2 HSP90AA1 PREPL NCEH1 GLDN NXPH1 SV2C CAMK2G TRIM37 LUZP2 HSP90AB1 D4S234E NDFIP2 COX8A AC244489.1 RHBDD2 GAD1 MARCKS CBLN4 NAP1L3 AEBP1 TSC22D1 MAF SPOCK2 COX7C YBEY ARX DCLK1 SLC1A2 CHL1 ATP6V1E2 TDRD7 MT-ND5 MT-ND4 BCL11B HIGD1A SERINC1 ATOX1 RPL31 RPL12 MRPL55 CAPZA2 LMO4 PGM2L1 ZBTB20 VDAC2 VSTM2A DYNC1I1 IDS RPS3A ATP6V1G2 RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B MT-CO3 MT-ND3 IDS MT-ND4 SYT1 ATP1B1 KIT HNRNPA1P40 SNAP25 TMA7 NRIP3 PET100 RPS15 RPL35 CLU HMP19 TMSB4X GRIN2A MT-ATP6 SLC6A1 THY1 RPL8 HSPA8 ATP1A3 NXPH2 FXYD6 MT-ND1 FSTL5 AP2M1 CHGB PDP1 CRH RP11-111M22.2 MTRNR2L12 KITLG RPL23A MT-CYB BRICD5 MT-ND5 B3GNT1 PCBP1 NDUFA4 GRIK1 PGM2L1 EYA4 RTN1 PLCB1 SLC22A17 ATP5A1 RTN3 PDCD5 CYFIP2 YWHAZ UCHL1 TRPC3 C14ORF2 CALM1 WIF1 SERF2 OAZ1 NRCAM MT-CO2 SLC38A1 INA KIFAP3 ZNF385D BIRC5 NR1I3 ATP6V0C RAB40B SOX2 RAB6B KCNAB1 FAM96B UQCRC2 GAP43 TUBA1A MEGF11 APLP1 PREX2 GALK1 SKAP2 RAB3A PRNP FKBP8 NECAB1 TGOLN2 ADARB2 ATP6V1A UQCR11 FTH1 SCN1A GPX4 RNASEK-C17ORF49 RP11-20I23.1 SSTR2 DUSP1 CABP1 DNER PRDX2 LAMP5 HSPE1 MGST3 VAPB MAP7D2 CHL1 GAPDH TSC22D1 RPL26 PSAP CKB ARL6IP5 RASGRF1 RAB3C FXYD7 PRKAR1B EIF1B GNAQ DPP6 GOT1 SLC7A8 GRIN1 SPRTN MTRNR2L1 GLRA2 SPCS2 CHMP5 TCEB2 CLIP2 MTRNR2L8 MAP1B NDUFAF2 ACOT7 SLC24A3 PLCXD3 ATP5E KIF5A TUBB2A PEBP1 NDUFB8 APLP2 MARCKS PREPL PJA2 RPS12 CACNG3 CRIM1 ALDOC COX5B RPL3 DNAJC5 FTL RPS6 OR6D1P VDAC3 SEZ6 NDUFS5 MFSD6 PCSK1N HINT1 GDI1 SP8 GAD2 MFN2 CCDC85B TBCB ACTB SCG2 EDF1 RPS3A GRINA YWHAG GPCPD1 MIR6723 MTCH1 OCIAD1 CCK CLSTN1 LUZP2 KIF1A GPM6A USMG5 ATP5G2 BCKDK GSTO1 UQCRB ATP5B ATP2A2 SIRPA TMEM130 RPL18A PCDH8 GRIP2 GNB1 COX17 PANX1 SERINC1 SPOCK1 VCAN CNR1 OXR1 ZNF536 NDUFB10 NFE2L1 NUP37 RPL36A RPL13A SKP1 NRAS MDGA1 HSP90AA1 CYB5R3 HDAC1 SEC61G ATP6V0E2 LINC00116 SNAP91 SNCB TPRG1L SRD5A1 RAB3IP PPM1A CHN1 ENSA WDR47 CAPNS1 ERBB4 CALM2 AK5 PIN1 MAP2K2 SULT4A1 ATP6AP1 NDUFV1 MT-ND2 CAP2 RPL6 ENOPH1 UBE2E3 CFH PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 RAB3B TMSB4X BIRC5 ATP1B1 RTN3 PTCHD4 SLC6A1 SYT1 RTN4 DNER RPL15 ATP6V1E1 ATP1A1 RTN1 CYFIP2 MTRNR2L1 TSC22D1 NR1I3 TUBA1A PDP1 ATP1A3 BSCL2 NHP2L1 NDUFB8 ATP6V0D1 OLFM2 PTPRT RPS27A PNKP SCN1A MT-CYB ACP1 ARL6IP1 KIF1A COX6A1 CEND1 B3GNT1 WBP2 THY1 PPP2CB OR6D1P SLC32A1 PGK1 KCNC2 MT-ND3 APP ARF3 MT-ND2 SGCZ GRIN2A NAPB FXYD6 BCL11B PROX1 ITM2C RPL13 SNAP25 ZNF350 APLP2 RPL41 PLEKHD1 ARFGAP2 CALM3 TMSB4XP4 TMA7 PTPRN2 PLD3 TUBA4A STMN4 ARF1 HMGCS1 PLAC8L1 NFIA NDUFC2 TBCA TAGLN3 CABP1 MYL6 COX7B NDUFB5 GFRA2 FAM174A ERBB4 ASAP1 PREPL CCDC61 METTL23 KLHL5 CCK HINT1 DYNLL1 SULT4A1 DPP6 GRIN3A KCNH5 SARAF MT-CO3 EGFL7 LMO4 MTRNR2L12 UBE2E3 STXBP1 SYT11 BEX2 TEX15 PPM1A RNF181 APBB1 OXR1 IQSEC1 NGFRAP1 COX7C UBE2N CD24 BEX1 TSPYL4 SYN2 PDE1C TUBB4B RPL8 DIRAS1 NCEH1 NDUFS5 CLSTN1 GNB1 VCAN C16ORF13 CHGB EIF1 MAF CHL1 FAM71E1 LIG1 PCSK5 SUSD4 COX4I1 RAB6B RAN MTRNR2L8 ACACB FAIM2 AP2M1 CLIC4 GRIK1 NRCAM EIF4A2 PDCD5 GHITM C6ORF118 CLIC2 PCDH15 SCN2B COX7A2L SCAMP5 NCDN ELAVL4 CD63 SNAP91 GAPDH CPE MAP1B ADTRP SIRPA PGAM1 MAP7D2 NRIP3 PTMA CRIM1 UBA52 NDFIP1 FTL NTNG1 C10ORF10 CDK14 RFK OCIAD1 SERINC1 KCNV1 MAPK8IP2 YWHAB KIF21A KCNAB1 FSTL5 DYNLRB1 USMG5 RPL35 ATP5G3 ERH PIK3R1 ALDOC SFRP1 CHST9 SLC1A2 SRP14 UBE2D2 CALM2 SKP1 LIMK1 MT-ND1 GPM6A CLIP3 TXN SLC25A6 PRKACB RP11-195F19.5 RAB7A BNIP3 STMN2 CREG2 STX1B GAD2 C4ORF3 RPL37A EDF1 ATP6V1A SYT3 DNAJB9 BAG4 S100A6 RPL31 RP11-111M22.2 CHN1 FIS1 SEZ6 UQCR11 RPS2 SV2C TSPYL1 COPE SLC7A8 CSDE1 SNRNP25 RAB3IP ANAPC13 ISG15 KLC1 QKI MPPED1 PCDHA10 NCAM2 MT-CO2 EIF4G2 VDAC3 CDH13 IQCH SPOCK1 CLU DSTN MORF4L1 CA2 ARL6IP5 DOCK10 COX6B1 RPL39 SLC7A5 THYN1 NPTN TKT MMD PMEPA1 ARPC4 HN1 ID2 ITM2B WBSCR17 RPS28 HCN1 PRELID1 ARL4C GRINA FTH1 ALDOA RNASEK-C17ORF49 RAB6A MTRNR2L6 MIF PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-ND2 MT-CO1 MT-ND4 MT-CO2 MT-CO3 RAB3IP TMSB4X RPS15 ATP1B1 PPIA RPL37A PRNP MT-ND3 ATP5B SEMA4G PREPL HHIP CCK TSPAN7 ATP6V0E2 NGFRAP1 NRCAM MT-ND1 LANCL1 DNM3 NMNAT2 CALM2 CD99L2 ARFGAP2 NHP2L1 PELI2 GAD2 TEX15 RAB6A TMEM59L ELMO1 ATP2A2 SOD1 PSMC1 UQCRB OPALIN GRIN2A RPL15 TAC1 MBP PTCHD4 CDC42SE2 PPM1A OLFM1 FTH1 DCLK1 SLC31A2 SP9 B3GALT2 ACP1 HSP90AB1 SCD5 NECAB1 SNAP25 TERF2IP THY1 PIK3R1 BEX2 MYO16 RAN APLP1 MAL INA PEBP1 GPM6A NPTN IGFBP5 EFHD2 HMGCR EIF1AX IDS GABRA1 KIT PPP2CA C14ORF132 CLIC2 NDUFC1 SAP18 APLP2 SPRYD3 SKP1 YWHAQ ACSS1 EXTL2 CTSD FRMD4B FARSA OLA1 ACTG1 HHATL CAMK2G MYRF FAIM2 RPL13A ATXN10 PMEPA1 SLC7A8 MAFB EFR3A ITFG1 RTN3 CALM3 MT-ATP6 ZBTB20 CKB POLR2L TPT1 CAPZA2 TLE4 RNF11 MTCH1 GRIK1 BIRC5 FRZB CALM1 CTC-575D19.1 PDP1 RPL32 ANKRD20A11P GDI1 ANAPC13 HMGCS1 MTND1P23 ANLN VSTM2A YWHAZ NDUFB1 TOMM20 RPS6 RTN1 CLTC ERBB4 PCDH19 LDHB TMX4 EYA4 CRIM1 AP1S2 CD59 PLEKHD1 SYTL2 ZNF385D RAB3B MIF AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND3 MT-CO3 MT-CO1 MT-ND4 SYT1 MT-ND2 MT-CO2 MT-CYB MTRNR2L1 SLC6A1 SNAP25 KIT FXYD6 GRIN2A RAB3C RTN3 PREPL TMSB4X ATP2A2 MT-ND1 ZNF536 SERINC1 CHL1 ACTB MTRNR2L6 PPIA ARL6IP1 SARAF SPOCK1 TOMM20 DNAJC21 RTN4 YWHAG INPP5F ATP1B1 DNER MT-ND5 IQSEC1 KIF1A PRKACB CDK5R1 RTN1 SCD5 APLP2 CEND1 GAD2 CLSTN1 SLC22A17 NGFRAP1 TSPYL4 UQCRH NPTN TBC1D15 MT-ND4L ITM2C VAMP2 SLC12A5 CLTC PPP2R1A CADM3 TKT TMEM130 SOX2 SNX10 ATP9A SYNJ1 RPS28 CNTN1 ARL4C CTBP1 PHYHIP CALM3 NRGN SYN2 CAMK2N2 GAD1 TMEM59L SNRPN IDS PJA2 FAIM2 TPI1 MT-ATP6 PKM CA2 RAB3A GRIN1 PRNP CALM1 DUSP6 SCAMP5 ATP1A3 CLU FGF12 MORF4L1 RAB3IP NDFIP1 NXPH1 SUMO2 NEGR1 SUB1 RFK GDI1 NECAB1 PSAP TMEM255A TERF2IP SEZ6L2 SLC38A1 EIF4A2 KCNC2 GPM6A MAP1B ENOPH1 NSF GADD45GIP1 LINC00086 PCBP1 THBS2 NDUFB10 EPB41L3 DHCR24 ATP5B FBXW11 SPRYD3 FAM174A HTRA1 RAB3B USMG5 ACTR10 CCK SYTL2 ADSS ATP5I CBX6 MAGEH1 MAP2K4 PAK1 UBE2N LCP2 RPL26 RPL11 CERS6 VPS35 RAB2A PSMD12 TNFAIP8L3 GLO1 CDK17 PRKAR1A BASP1 VDAC2 VSTM2A RASGRP1 SERINC3 SOD1 DUSP4 PDZRN4 AES ATP6V1F STX1A PPM1A AAMDC ADD2 PRUNE2 CAMK2D GPRC5B KCNAB1 TUBB4B ROBO2 HCN1 PPP1CB HNRNPH2 UBE2M PHYHIPL PSMD8 SNCB ATPAF1 GRIN3A EPS15 TUBA1B RPL15 ADAM23 TBCA ATP6V1G1 SLC7A2 PNMAL1 DMTN REPS2 TGOLN2 MRPL15 RP11-632C17__A.1 NFIA RPH3A SYT13 DNM3 STRAP APP NXPH2 PTPRN2 EPDR1 CHP1 CDH8 SPTBN1 COPS8 MPPED1 STXBP1 WDR47 NOS2 TSPYL1 JUND ARF3 MYEOV2 SYT11 DNAJC6 KIF21A TRAPPC1 PI4KA ARHGAP35 THY1 DYNLL2 SYN1 CISD1 ISOC1 KLC1 RCAN2 SCN1B TMA7 SSBP3 ATP6V1B2 DPP6 RP11-20I23.1 STMN1 HDLBP CSDE1 ADARB2 PTPRN EPAS1 CDKN2AIPNL GOT2 PITPNA LAMP5 TSPAN7 EDF1 ATP6AP2 STMN2 RGS4 BNIP3 COX7B BSN COX4I1 ETV1 PNMA2 BCL11B TCEB1 NCOA4 UBB COPS7A TPPP MPC2 SLC9A6 SLC26A1 LYSMD2 MTATP6P1 EIF1 CHMP5 SERTM1 CDS1 TSC22D1 RBX1 EFHD2 IL6R SP9 ENO1 YWHAB ITM2B GAPDH OLFM1 SLC7A1 ATP2B2 ATP6V0C ZFAND5 SPCS2 WBSCR17 NUTF2 VAT1L CAPNS1 MAPRE3 GPX4 NDRG4 PEBP1 DPYSL2 DNAJC5 C14ORF132 COPRS MAGED1 VSTM2L PRKCE EIF4G2 CD59 SCG2 SYNGR1 MAF NRIP3 CETN2 NDUFB11 FAM163B SYT3 PDP1 PGM2L1 MAFB CHRDL1 CDC42SE2 CNP VSNL1 GNB1 RAB27B DNAJB6 SCN1A MAPK1 ENO2 PTMA ACTG1 FASN FUNDC1 SERF2 PDGFD SEPW1 PRKCB NTNG1 PTPRT MARCKSL1 DYNLRB1 TMEM132D CAPZA2 GYG1 ADRB3 SLC7A8 ATP1B2 TMEM14A NDUFB5 CLIP3 SPOCK2 MORF4L2 PAM PIP5K1B COX5B ID2 ANO3 TRPC3 HSPA4 GABARAPL2 PEG10 BEX5 PGK1 SKAP2 ALDOA ARF5 TUBB MBOAT7 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-ND3 MT-CO2 CXCL14 RELN SYT1 SLC6A1 CLSTN1 MT-CO1 MT-ND1 PGM2L1 MT-ATP6 CADM2 SNAP25 ELAVL4 RTN3 MTRNR2L12 GABRA1 MAPK1 NCAM2 SPOCK3 SYT4 ATP1B1 MT-CYB ADARB2 APLP2 JUND CNR1 TSPYL1 MTRNR2L1 CALM2 YWHAB FXYD6 SCN1A GAD2 EIF1 NR1I3 EPHA6 KCNIP1 SPOCK1 SCD5 AES OCIAD1 DNER PTCHD4 PPM1A STMN3 PHYHIPL FAT1 PPP2R2B FAIM2 CBLN4 PRNP SST MT-ND5 MT-ND2 GDI1 RP11-111M22.2 RAB3IP SCOC EPB41L3 NPTXR UBE2M BCAT1 GAD1 AP1S2 ASAP1 ITM2B ACTR10 DNAJB9 YWHAG FGF12 ARL4C HSP90AA1 HSP90AB1 ELAVL2 RPL26 TMEM14A PPP2CB EIF4A2 FSTL5 PLD5 SSBP3 PPA1 SLC2A1 SYNJ1 HNRNPH2 PRKCE GNAQ CLIP3 DCC FXYD7 MTRNR2L8 IQSEC1 STXBP1 ADD2 VAMP2 WASL ASAP2 GRIN2A RPH3A HBQ1 CX3CL1 TMOD2 UBE2V2 PLD3 COL5A2 RPL35 PPP3CA CERS6 PCDH17 DNAJA1 SLITRK1 EFR3A TCEAL3 SERPINI1 NARS PTPRM HMGB1P8 MYL6 SARAF KIF5A MAP2K4 PAFAH1B2 RAB11FIP5 LANCL1 THY1 GOLIM4 DUSP1 MAP1B STAG3 EGFR MT-ND4L KCNC2 ACTB TCEAL2 PLCB1 GUCY1B3 DKK3 SLC25A4 RAB1A PGRMC1 NAP1L3 GJD2 PSMD8 NREP NMNAT2 CTNNB1 PROX1 IDI1 PIP5K1B TEFM CALM1 ROBO3 ERBB4 CDS1 SYNGR1 NMBR NAP1L2 PARM1 CHN1 MARCKSL1 SKAP2 SALL1 RGS12 TMEM35 PPP2R4 DYNLL2 EIF4G2 NUAK1 AKAP12 QDPR DNAJC5 FGF2 HN1 COTL1 SNCA MAGED1 ATP1B2 SEZ6L FTL REEP5 D4S234E ASIC4 APP SCG2 PTPRN2 TM2D3 SERINC1 MTATP6P1 ATP2B4 YWHAZ PRKCB SYTL2 LMO3 NDNF WDR47 NSF IDS ARL6IP5 ROBO2 BEX1 PFKP MED10 NFE2L1 REEP2 ATP6V0C STX1B NXPH1 TRPC3 QKI ZFAND5 CDH22 SLC38A1 RHBDD2 GPRC5B SLC1A2 MAPRE2 BIRC5 ARL8B MAP1LC3A NXPH2 ARL6IP1 NAA38 RP11-20I23.1 RPS27A CYC1 ITM2A RLIM STMN1 TOX NHP2L1 MTUS1 CDK5R1 HEG1 TUBA1B C12ORF49 BCL11B SRM GSKIP TSC22D1 SLC25A22 TUBB2A ZNF385D PPP1R9B SERPINF1 RNF11 KCNAB1 SUMO2 GNB1 JAKMIP1 PRUNE2 DDR2 RAN KIFAP3 SCN3B NR2F2 SLC9A6 MPPED1 CAP2 STMN4 TERF2IP FKBP1A REPS2 CLTC SOD1 GPR158 BSCL2 MTRNR2L6 DYNLRB1 NGRN HILPDA B2M RPL13A MIF GTF2H2C_2 AC244489.1 PCDHA9 PCDHA10 PCDHA4 PCDHAC1 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 MT-CO2 MTRNR2L12 MTRNR2L1 SYT1 MT-CYB MT-CO1 SLC6A1 SNAP25 ATP1B1 MT-ND3 MT-ATP6 MTRNR2L8 KIT CRIM1 FXYD6 MT-ND1 TMSB4X RAB3C HAPLN1 PGM2L1 CLIP3 SCOC PPP2CB HCN1 SYT11 PCBP1 CLU PRIM1 SPOCK1 RTN1 AP2M1 ARL4C VSNL1 CALM1 DNER PSAP MT-ND2 CREG2 MAP1B GAD2 CALM2 NDRG4 GDI1 MTRNR2L6 KCNAB1 GDE1 TSPAN7 COL25A1 GAP43 CAMK2N2 RAD23B CDK5R2 YWHAZ PSMD8 ATG101 CDK14 RASL11B EEF1A2 PJA2 CEND1 ASNA1 DYNC1I1 SYN1 TLN2 NPPC PIN1 ATP1B2 RPS10 SELT ANK1 NAPA LGI3 FAIM2 LHX6 HDLBP TUBA1B RHOB ACTG1 ARL6IP1 RTN4 STX1B RP11-632C17__A.1 PEA15 MED31 QKI GABRA1 DCLK1 C7ORF50 PLD3 ADSS THY1 EGFR SPOCK2 STUB1 BCL11B ELAVL4 MGST1 PNMA2 MAP1A PROX1 ID2 GUCY1B3 MACROD1 RPS6 GLUL CALN1 VSTM2L EYA4 CNTN1 GPM6A KIF1A SLC9A6 BASP1 SFRP1 APBB1 DNAJA1 APP EIF1 HNRNPA1P40 ATP2B2 PPP3CB MAPK1 ITM2B RP11-175B9.2 EIF1AX NDUFA13 HSP90AA1 TSPYL1 TMTC1 FTL PDP1 SV2C RASSF8 TCEAL3 FAM163B ERBB4 ZNF536 ARL6IP5 SSBP3 CHMP4B KCTD12 CD24 MTUS1 MAFB RPL10A CTSD YWHAH CHL1 NPTXR IDI1 UBB GOLIM4 PPP3CA KLHL5 CAP2 PNKD KCNH5 ATP5I TNFAIP8L3 MT-ND4L SLC7A8 NECAB1 CDH13 KCNC2 DHCR24 BSN PPP2R2B ARL8B KIF21A TAC1 LIMK1 ZNF385D RP11-111M22.2 NSF SYTL2 RAB3B B2M PCDHAC1 PCDHA9 PCDHA10 PCDHA4 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ATP6 MTATP6P1 MT-ND3 SYT1 MT-ND4 MT-CO2 MT-CYB RELN DNER MT-ND2 ATP1B1 MT-ND1 KIT RTN1 GAD2 MTRNR2L12 CALM2 SNAP25 SERPINI1 SERINC1 MTRNR2L1 GDI1 ERBB4 CALM1 MT-ND5 RTN4 PSAP HSP90AB1 HSP90AA1 SLC6A1 PRNP PRKCB STMN2 GRIN1 CYFIP2 MTRNR2L6 NUDT21 SPOCK1 GRIN2A CBLN4 RTN3 TRPC3 PRKAR1A MAP1B PNKP FXYD6 PPIA LAMP5 DKK3 CADM2 TERF2IP MTRNR2L8 ZFAND5 PTCHD4 CLPTM1 TGOLN2 MAP1LC3B NAPB MDH1 PREPL SH3BGRL3 PPP3R1 TUBB2A CKB CSDE1 IGF1 SERPINE2 SARAF CALM3 IDS CX3CL1 FGF12 GABRA1 NPTN TOX2 ATP1A1 NAP1L2 PEBP1 POMP ATP6V0E2 PHPT1 CD99L2 PRKAR1B CDK14 CXCL14 SCG2 CLTC RPL15 SYN1 MT-ND4L PGRMC1 CLSTN1 ASIC4 UBB ZMAT2 LMBR1 HS3ST5 MAP4 KIF1A ATP6V1B2 B3GALT2 GAPDH KCNC2 ATP2A2 GNAQ SLC7A8 EYA4 VAMP2 TSPAN7 COX6A1 PKM AP1S2 BSN RPL31 APP TMEM59L LMO4 NPTXR NGRN B2M ATP6V0C RP11-20I23.1 MTND1P23 LSM4 UQCR11 HPRT1 NXPH2 DPY19L1 NDUFB8 TPGS2 RPH3A TMOD2 PDGFD SERINC3 STMN3 VPS35 EPHB6 TUBA1B NDRG3 SKP1 CADM3 SUMO2 SSBP3 DOCK10 STX1B FKBP8 CHCHD2 PCBP1 ZNF536 FAM3C RAB3B SCOC NCAM2 SPCS2 SYT4 ARF1 RAB4A GRINA FBXO2 ITGA6 LMBRD2 EFHD2 MAPK8IP2 CCDC85B LDHB GABARAPL2 PAFAH1B2 SCN1A CCK COA3 TCEA2 SLC6A17 COX7B DRAP1 PPP2CB GNG12 TIMP2 GPR158 RCAN2 TUBA1A EIF4A2 NDUFS5 NRIP3 TOX CLDND1 ETS2 RAB1A ARX PTMA FAM174A SV2C RND3 SEMA4G RPS6 MFN2 MAP2K2 RAD23B RAB3C RCAN3 CAP2 COX4I1 COX7C PRDX5 TOX3 PEG10 NRCAM RPL37A KCNAB2 KCNAB1 CYCS EDIL3 RPL35 DNM3 MYL6B ATP6AP1 BASP1 MAP7D2 UQCRC1 CMAS UQCRC2 MAF MAP1LC3A SNRPN EIF1AX EPB41L3 ENSA PNMA2 SUSD4 PDGFRA SEPW1 TSPYL1 MAGEH1 BEX2 SYT5 TMEM120A UBA52 DYNLL2 NDNF REEP5 CTSD CTNND2 NGEF NR1I3 WBSCR17 WLS RPS27A CD59 SYT13 ATP6V0B ITM2C UBA1 SHARPIN ATP6V1A PRUNE2 UBC HMP19 PPP1CB RNF11 SNCA GPM6A CDK5R1 PGAM1 NFIA HMGCR CITED2 AP2B1 KLHL12 DPYSL2 PCMT1 CDK5 INSIG1 ARL8B MPI PID1 SYNGR3 TMSB10 MRPS21 CRIM1 NAP1L3 LAP3 CFL1 ATP6V1C1 IQCK GJD2 FABP5 PIN1 MAP2K1 RPL39 GUCY1B3 TRIM37 OAZ1 LMO2 GRIN3A JAKMIP1 FAT1 RPL13 DPP6 DLX1 APLP1 GAD1 CACNG3 ARL4C LMO3 FAM127A RPL12 RPL38 RAB2A EPS8 SCAMP5 HOPX CACNB1 SLC39A10 SUMO3 TOMM70A LDB2 NDUFA2 GYG1 GSTO1 TMA7 DIRAS2 CREG2 NDFIP2 RHEB GHITM CDK5R2 HMGCS1 EIF4G2 ACTG1 NDUFV1 CACNA2D2 LIPT2 STXBP1 UBE2V2 HINT1 RRM2B ATP2B2 FTL SIRPA LYSMD2 GABARAPL1 WBP2 CAMK2N2 ADRB3 SNCB TPI1 HK1 ROBO2 PRKCE HDAC1 PSMD2 PCP4L1 VEGFA VSTM2L ARF5 NSF APOLD1 GABARAP RPL36A MIF TUBB RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 ATP1B1 NDFIP1 RAB3B MT-ND4 CLSTN1 TMSB4X GRIN2A KIT GPM6A TAC1 PTCHD4 DNER PSAP NXPH2 SCN1A MAP1B CNTN1 RAB3C SCD5 FTH1 KCNC2 ACTB THY1 TBC1D15 DNAJC21 DNM3 VPS35 CTNND2 FAIM2 BNIP3 PRNP SIRPA HSP90AB1 LAMP5 ARHGAP29 RTN3 STXBP1 LUZP2 HSP90AA1 ARL4C KIF21A VAMP2 SPARC TOX GOLIM4 PPP2CA ERBB4 ARL6IP1 TSPYL1 DPYSL2 EIF1AX NEGR1 PRKACB SEPT1 HTR2A PDP1 RTN4 APP CTBP1 PGK1 GRIK1 APLP2 ITM2C ALDOC CDH13 RHBDD2 STRAP NAP1L3 ATP2A2 MT-CO1 PPP2CB VSNL1 NIPA1 MTRNR2L1 GRIN1 NR1I3 ATP1B2 RCAN2 DCC SNRPN PSD3 ELAVL2 MYO16 CPLX2 NME1 MTPN CALM1 HPRT1 WLS MAP1A GPR126 SUMO2 MT-CO3 CBX6 CAMK2G CLSTN2 RPH3A CD59 CCK GBE1 OAZ1 GTF2B BSG SRM NUDT21 LIMK1 RPL32 OCIAD1 SLC8A2 GHITM RPL12 GDI1 PEBP1 FXYD7 NDN PPP3CA PHPT1 PXDC1 TM2D3 MT-ND3 KCNH5 C2ORF80 DPP6 SEZ6L2 ARHGDIA MAFB TMCC3 FAM19A2 EIF1 WASL NFIA DNAJC6 TUBB2A RPL3 SERINC1 MED31 EFR3A DKK3 MYEOV2 SPOCK2 FSCN1 MT-ATP6 PLD3 MYL12B SPOCK1 TOMM70A PNMAL1 PRKCB PPDPF PINK1 GAD2 ATP5J2 TCEB1 COX6A1 ITM2B BAI2 RAB1A STMND1 SLC9A6 GABRA1 TENM3 NXPH1 STMN1 YWHAB PREX2 RAB6B NDUFA4 QKI KCNAB2 LPPR4 NGFRAP1 NAP1L2 RPL41 SYN2 SLC6A1 OXR1 BANF1 CALM3 SLC24A2 SYN1 NECAB1 EGR4 DPY30 NCBP2-AS2 CLIP3 LAMTOR1 LGALS1 SV2C GUK1 BCL11B HTRA1 SLITRK1 C1QL1 OPCML LGI3 YWHAH FSTL5 GRIP2 SERF2 PJA2 SPP1 SH3GL2 SLC25A22 CLTC CRIP2 UQCRC1 NDFIP2 PLCB1 PKM EXTL2 TRHDE IL6R YWHAZ GAPDH NREP MTUS1 LRP2 PCP4L1 CPNE8 PTPRN2 CD99L2 SLC12A5 GUCY1B3 PRKCE SPARCL1 REPS2 TPI1 TMSB4XP4 NHP2L1 TSPAN7 FER1L4 ENO2 MAP2K4 BSN MTHFS SULT4A1 CNP LANCL1 NACC2 GAD1 SELT SLC38A1 SARAF DNAJB6 SOX2 NDRG4 KLC2 CDK5R1 MIR3916 TMEM35 PGD PPIA MLF2 SCN2B SEZ6 CAP2 C11ORF31 PIP5K1B TCEAL7 RTN1 PPP3CB LINC00086 MT-CO2 WBP11 SLC7A8 PIK3R1 SCOC DDX3YP1 DNAJC5 LAMTOR2 BEX2 NSF RP11-219A15.1 ATP6V0C RNASEK-C17ORF49 SERINC3 RP11-20I23.1 BSCL2 GABARAP MTRNR2L6 APOLD1 MIF RPL36A AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5 SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 MT-CO2 MT-ATP6 MT-ND1 MT-CYB VAMP2 MT-ND2 DNER SNAP25 MTRNR2L1 MT-ND3 TSC22D1 PMEPA1 ARF3 RASGRF1 ACTG1 ARL6IP1 ITGB5 PTCHD4 SV2C SYT1 HSP90AA1 PCSK1N SMAP2 DPP6 PRNP RP11-111M22.2 RAB3C SPOCK1 CDH13 RTN1 DSTN LMBR1 SNAP91 ATP1B2 PI4KA PSMC1 ERBB4 PTPRN LAMTOR5 GABRA1 UQCRC1 PTMA SLC8A2 ATP1A1 TMEM130 CAMK2D ARPP19 OLFM1 PFN2 SLC22A17 MTATP6P1 WBP2 GPR158 PSD3 APLP1 NCDN PDCD5 ANKRD20A11P HMGCR CLU SLC9A6 RANBP1 CISD1 MRFAP1 PPP3CB RPH3A VSTM2L RTN3 DPYSL2 SUB1 B2M ENO2 RPL32 PRKCE LL0XNC01-16G2.1 PDGFD KCNH5 THY1 BEX4 CERS6 COL6A2 GAD2 CXCL14 MTRNR2L12 MAF TSPYL1 NDUFA4 B3GALT2 PREPL PDGFRA SPOCK2 SELT LINGO1 PEBP1 GRIK1 PHYHIPL AES NDFIP2 NMUR1 NPTN PNMA2 TOX PROX1 GPM6A HIGD1A SPOCK3 CRISPLD2 DPF3 PKM TERF2IP MBP PTPRS DNAJA1 SCN3B RELN NR1I3 KIF21A FAIM2 POLR2I PLCB1 VSNL1 ETV1 CPNE8 TAGLN3 METTL7A KIT SOX4 NFIA TMEM179B NDUFB2 OAZ1 OCIAD1 CLTC GRIN2A MAP7D1 RPL35 SHARPIN SERTM1 CNTN1 SYT11 INSIG1 KCNC2 TMEM14A EPS8 RPL26 NTNG1 MAFB MGST3 GPRC5B TMSB4X VCAN CLTB AAMDC PPP1CB TUBB2A FAM163B SSBP3 RAB11A ARL4C ATP1B1 NDRG4 ARL6IP5 MTRNR2L6 OR6D1P IDS RP11-219A15.1 ESCO2 SYTL2 RAB3B ZNF385D DNAJC21 TBC1D15 PLEKHD1 AC244489.1 TUBD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 GAPDH SLC6A1 OR6D1P CFH OR7E117P RAB3IP RAB3B SYTL2 BIRC5 PTPRS YWHAG SAMM50 KCNAB2 NDUFAF2 PDE1C FTL GAD1 TCEA2 NRGN SCN1B NTNG1 GABARAPL1 DCTN1 PJA2 GNB1 ATP1B1 RP11-111M22.2 KLHL5 ARX FRZB CLTC SUB1 PKM TMA7 CALM3 COX7A1 ATP1A3 ATP5B SEPW1 TAC1 PLCD1 TMEM151A MTX3 GRIK1 RPL38 IDH3A CALM2 SLC12A5 TMEM59L SPARC STMN1 ANXA6 RPL32 RPL36A RTN4 PRKCE MAP2K1 THY1 KIF21A LMO2 OAZ1 MAP1LC3A EID1 ATP5I PLD3 PIP5K1B RPS15 FBXL21 APEH PPP3CB RGS4 QDPR PNMA1 VSTM2A AP2M1 RPL37A KIF5A RSL24D1 ATP1A1 CDC37 TBC1D15 DNAJC21 IDS MIF RPL7 PCDHGA6 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 CFH MT-CYB SLC6A1 SYT1 SNAP25 NPTXR ZNF385D GRIN2A MT-ND4 SPOCK1 ERBB4 ATP1B1 MTRNR2L6 CBLN4 PTCHD4 HSP90AB1 TPT1 STXBP1 TBCB SKP1 MTRNR2L12 DNER MT-ND1 ATP1B2 RELN ATP1A3 PNMA2 TMSB4X PTPRM TBC1D15 COL5A2 TSPAN7 LUZP2 EIF4A2 CNR1 ABHD8 PCGF1 KIFAP3 PRDX3 PEBP1 DOCK10 PREX2 B3GNT1 HNRNPA1P40 PRNP CERS6 RPL8 NR2F2 REEP5 MPPED1 PPIA ANO3 ALCAM YWHAH COX7A1 GABRA1 ARF3 FSTL5 KCNC2 SPDL1 HNRNPH2 ARL6IP1 CMPK1 WDR47 LINC00087 ARL4C NAP1L5 KMO NEGR1 CHCHD2 PRKCB DLX1 PCDH17 ATP5G2 GNAQ PITHD1 BEX1 KCNAB1 PDP1 CTBP1 ATP6V0E2 PPA1 C6ORF1 MED10 RAB27B NDRG4 SLC25A11 RHBDD2 RPS3AP12 RP11-111M22.2 ATP5E GPM6A SST SERPINI1 CAMKK2 CXXC4 SYT17 THYN1 MT-ND4L HMP19 CAMK2G OCIAD1 MT-ND3 MORF4L1 PRKCQ NAPB IDI1 SUCLA2 CXCL14 RPS27A DPYSL2 MT-CO3 PRDX1 CPLX3 GNB1 ARL8A EDNRB CRIM1 EPS15 QKI DCLK1 RPL35 GAD2 TIMP2 RHEB SNRPN BASP1 ATP5A1 MTX3 COX7B CKS2 MTRNR2L8 RP11-219A15.1 RP11-20I23.1 ATP6V0C AC244489.1 RPL7 BSCL2 IDS GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SYT1 MT-CO1 MTRNR2L12 MT-ND4 RAB3B SLC6A1 KIT HSP90AA1 MT-CO3 GAD1 GRIN2A KCNC2 MTRNR2L6 CLU MT-ND2 GABRA1 ATP1B1 DNER CDK14 SNAP25 CLIP3 CALM1 RAB3C PTCHD4 PREPL CALM2 PLCB1 SPOCK1 ATP1A1 RAB3IP CFH SCN1A MT-CO2 APLP2 HSPA8 STMN1 CADM2 UBB KLC1 SPOCK2 CDH13 YWHAB GAPDH DPY19L1 ZNF536 SLC24A2 MT-CYB GNB1 PKM APP DPP6 NRIP3 CLSTN1 MBP ELAVL2 STMN3 ITM2C NR1I3 DNAJC21 OXR1 RTN4 RPH3A PMEPA1 ADARB2 DYNC1I1 FSTL5 MT-ND1 GHITM RTN3 PPP3CB EIF4A2 CREG2 CA2 MRAS RPL32 VSTM2L FGF12 PCSK1N SYT4 ALDOC SLC7A8 MT-ATP6 SOD1 ATP5I SLC25A4 LMBR1 CYFIP2 THY1 PNMAL1 BIRC5 PINK1 PSMD12 PID1 RAB6B PEBP1 RPS15 DOCK10 CXCL14 SERPINI1 RPL3 PI4KA VDAC1 GPM6A PHYHIPL RTN1 CDK5R1 PRDX2 INPP5F RPS28 RPL31 CBLN4 TUBA1B GRINA CKB ATP2B2 RP11-111M22.2 SSBP3 SSTR2 DLX1 MAP1A CNTNAP5 TCEAL2 MORF4L2 ENO2 ATP5E GAD2 COX4I1 TMEM65 GOLIM4 PGK1 TMEM59L TSPYL1 PCDHA4 PCDHA9 IDS TF ESCO2 NHP2L1 HAPLN4 VAMP2 CACNA2D2 EID1 SEZ6L2 NDUFB8 VAPB ATP6V0D1 SRP14 STMN4 SEMA4G EIF1 POMP KAL1 RAB2A FKBP8 MORF4L1 KCNAB3 CFL1 ARF1 FAM163B RPL13 TMEM120A SYN2 LRRC69 NDFIP1 YAF2 LINC01314 GRIN1 LUZP2 CLPTM1 DEXI COX6C TERF2IP ENSA TMEM132D SYNGR3 SERPINE2 FLOT2 NDUFA13 UBE2V2 SYT11 MAP1LC3A LAMP5 TMEM151A DNM3 GRIP2 TMX4 IGF1 ATP6V0B MAP4 PRKCB SCN2B EIF4G2 ADAM23 DNAJB6 GDI1 QKI PIP5K1B SRP9 FXYD6 REEP5 TXN AES CEND1 HMGCS1 FNDC4 COX6A1 SNRPN PCDHGA5 DNAJA1 HSP90AB1 CAB39 TEFM SMIM13 TOMM7 GUCY1B3 NXPH2 PJA2 UCHL1 RPL6 SUMO3 LMO4 FAM174A MAPRE2 RPL10A ZBTB20 SPHKAP ATXN10 SAP18 GRIN3A SLC25A6 RHEB EFHD2 SYNJ1 CORO2B HILPDA APBB1 BCL11B NMNAT2 NXPH1 MARCKSL1 SV2C PEF1 COX7B PTGES3 TMSB10 TGOLN2 RGS12 SELT TENM3 PRNP TMEM117 MT-ND4L KCNH5 ADRB3 ARL6IP1 PGM2L1 RAB11FIP5 DNAJC6 UBE2F POLR2K RPL26L1 PFDN1 RAB5C HDDC2 ANXA6 SKP1 ARL4C NDUFAF2 RPS2 ATP1A3 PDP1 PTPRM NFE2L1 PAM ATP6V0E2 CYB5R3 APLP1 SCN1B SCOC RGS8 ARFGAP2 SERINC1 ID2 NIPA1 STMN2 CAP2 SLC6A17 COPG1 PLD3 OR6D1P PEX5L KLC2 PRKCE SYNGR1 B3GALT2 HINT1 NDUFS5 PEA15 NELL2 RPL8 SYNPR REEP2 DDN TAGLN3 CD99L2 ATP6V1B2 RBX1 CLTC PTPRT CHL1 MED10 CNR1 PRKACB KIAA1211 NAP1L3 NFIA TCEB2 TPGS2 UQCRH RPS27A PPP2CA MAP7D2 NPM1P30 TMEM35 NGFRAP1 PPP2CB KCNAB2 TOMM20 RFK MFSD6 RUNX2 H2AFZ RPL35 PTMA OCIAD1 INA MAGEH1 TPT1 CAPNS1 CNRIP1 NDUFB7 FAIM2 RPL38 SLC9A6 RAB4A ATP9A RPS19BP1 HCN1 PTPRS OPN3 ATP6AP1 PCP4L1 ABHD8 CTSD RLIM CBX6 IDI1 TSPAN7 MAPK1 VCAN DYNLL2 MFN2 PGAM1 ITFG1 GOT1 RPL13A TMA7 PPP2R2B SERINC3 C14ORF2 CDK5 PAK1 NAP1L2 TMOD2 CYCS SQLE GNAQ UBQLN2 TMSB4X LRP1B NEGR1 DUSP4 ARL8B RAB3A UQCRB CIAPIN1 PSAP VSTM2A DUSP1 DCLK1 MT-ND3 ACTB YJEFN3 SULT4A1 RPL37A GPX1 ARF5 RPL21 ATP6V0C RP11-20I23.1 NGRN PSMB3 RPL7 GABARAP GTF2H2C_2 RPL12 AC244489.1 RPS26\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: DNER MT-CO3 KIT CALM1 PPP2R1A SCN1A MT-ND1 FXYD6 PRNP CALM2 SNAP25 SALL2 MT-ND3 SLC6A1 CTSD FAM174A RTN1 B2M PTMA RPH3A CLU OPCML MAPRE2 MTND1P23 ATP6V1G1 ZNF385D VSTM2L ATP5C1 MRPS21 ACTG1 CDH13 STMN3 RELN TAGLN3 SYN2 CMPK1 PCP4L1 SYT1 MT-ND4 DPP6 PTPRN PIP5K1B TRPC3 NGFRAP1 ACLY RPL26 CAB39 COPRS MTRNR2L1 DMTN ARL4C PCGF1 ARF3 RAB3IP ATP1B1 BCKDHB RASSF8 SLC7A8 ARX ERBB4 SNCB TUBA1B PCBP1 CAP2 PTPRT RPL39 RASGRF1 SLC32A1 PRUNE2 PEBP1 THY1 PRKACB CD99L2 BEX4 BNIP3 ACTB MT-CO2 PTCHD4 TSPAN7 CBLN4 PREPL GAD2 DRAP1 FAT1 ALDOC SLC8A2 PRPS1 PCMT1 GRIK1 GRIN2A CCK YWHAG NMNAT2 MAF BSCL2 VAMP2 PITPNA NDFIP1 RPL13 NAP1L2 MT-ND2 PPP3CA TPI1 TOX3 MAGED1 SNCA CHST11 UBA52 NFIA VDAC2 SLC22A17 REEP5 CNTNAP5 NEGR1 DLX6 MAPK1 STRAP PDP1 EIF4A2 TMEM230 NDRG3 FABP6 PPP3R1 JUND FGF12 KCNH5 CKB FBXW11 STMN4 ATP5A1 SV2C RNF11 SPOCK2 RTN3 COA4 SARAF B3GALT2 PSAP ELAVL2 NAPB GDI1 FTH1 SPOCK1 PTPRM MTRNR2L12 KCNC2 TIMP3 PDGFD HDDC2 SERPINE2 ENOPH1 SFRP1 MAP1A CAMK2G GABARAPL1 KIF21A TCEB2 MLLT11 HNRNPH2 SPRN KCNAB1 FAIM2 PGRMC1 MT-ATP6 EIF1AX BIRC5 MTRNR2L8 SOX2 MTRNR2L6 ESCO2 NGRN RP11-20I23.1 NSF ATP6V0C PCDHGA10 PCDHGA5 PCDHGA6 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RELN MT-CO3 MT-CO1 MT-ATP6 MT-CO2 SYT1 GAD2 DNER MT-ND4 MTRNR2L1 CALM3 MT-ND3 SLC6A1 HSP90AB1 EIF4A2 TSPYL1 YWHAG ZNF385D ARL4C TERF2IP AP1S2 KIT RAB3C PEBP1 EYA4 RPS28 PI4KA CALM1 GAD1 CBLN4 NXPH1 TSPYL4 ITM2B MT-CYB NDUFC1 TSC22D1 SERINC1 PHYHIPL TM2D3 MTRNR2L6 GDI1 VAMP2 PTMA TSPAN7 PLCB1 MT-ND2 PARM1 PNMA2 GABRA5 NAP1L3 RAB11A PKM CERS6 MLF2 ATP1B1 YBEY MTRNR2L12 YWHAZ KIF1A RPL31 TMSB4X ACTG1 SARAF CALM2 SELT GABPB1 SERPINE2 ATP6V1B2 FAIM2 NUAK1 OPA1 TUBB2A MRFAP1 ATP2A2 DNAJB6 MAP1B MAP4 ATP1A3 BCAT1 KLC1 SLC10A4 ERBB4 NR2F2 APLP1 BNIP3 RTN3 SCD5 APP SPOCK1 MAP2K4 NPTN PRKACB BCL11B MACROD1 TMEM59L MTATP6P1 RTN1 ALK FNDC4 TOX3 ARL6IP1 ACTB MORF4L1 DOCK10 RAB7A NDUFA11 CDS1 NDUFA5 CNTN1 PGRMC1 AQP7 SPRYD3 PHYHIP CXCL14 PROX1 SNRPN PGM2L1 PET100 PPP2CB GUCY1B3 RPL26 JAKMIP1 ELAVL2 TMX4 PTPRT MORF4L2 GPX4 SLC9A6 SEPW1 CEND1 CLIP3 TRPC3 PEX5L BEX1 HCN1 PNMA1 TBCB SKP1 KIF3C PLD3 GRIN2A NDUFB11 JUND SPOCK2 TMEM14A C8ORF4 TOLLIP SNCB HNRNPH2 UBC PJA2 PGD TUBB4B OST4 PRDX3 MMD ATP6V1A GABARAP CLU SLC12A5 FSTL5 EIF4G2 RASGRF1 SYNGR1 ARL8A REPS2 RP11-195F19.5 TUBA1B LYNX1 FAT3 MED10 APBB1 CX3CL1 ATP2B4 OAZ1 FKBP4 ACTR10 CADM2 ARL6IP5 ATRN PAFAH1B2 FXYD6 PINK1 FLOT2 UBE2D2 ROBO2 SCG2 YWHAB FTH1 DISC1 ETV5 C1QBP HMGCS1 NAPB SCAMP5 C1ORF233 TUBB2B KIF5A ELAVL4 PMEPA1 RPL13A ZFAND5 TBCA PCDH17 UBE2QL1 CAP2 CTBP1 LIN7B PRKCB GPR158 EIF1 KCNC2 BCAP31 PPP3CA RTN4 CDC42SE2 RPL41 CHST11 PSAP SELM ATP1B2 LMO4 SFRP1 PTPRM D4S234E VDAC1 LMBRD2 MT-ND1 ENO2 SOD1 COL5A2 UBE2F MTRNR2L8 EID1 MIR6723 NDRG4 PRNP SV2C WBSCR17 KCNH5 KAL1 ASCL1 TMEM35 AES ATP5F1 PTPRN2 RPH3A SCN3B INA TOMM20 SUB1 SPOCK3 SST ENOPH1 NBL1 CPLX2 PIP5K1B ATP6V1C1 RPL39 GDA RGS12 PLCB2 C9ORF16 SEC61G SSTR1 NEGR1 PGK1 PPP1CB KCTD12 FGF12 STX1B CYCS MAGEH1 COX6B1 MT-ND5 GLO1 YWHAH GPM6A MAPKAPK2 MIEN1 RPS4X SYN1 NDFIP1 SOX2 PREPL LINGO1 CCDC115 EIF1AX ENO1 OPCML ASAP1 RAB6A NPTXR RP11-1396O13.2 ATP5O KCNAB1 SDCBP NGRN IDS ALDOA ATP6V0C RP11-219A15.1 RP11-20I23.1 RPL6 RPL21 PCDHGA10 PCDHGA6 PCDHGA5 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SYT1 MT-CO1 MT-ND1 KIT SLC6A1 MTRNR2L6 APLP2 GRIK1 MT-ND4 TBC1D15 GAD2 MT-CO2 PMEPA1 SCD5 MTRNR2L12 PRKACB EIF1 MT-CO3 SERINC3 EFR3A SCN1A SLC24A2 RPS27A NDUFB4 NRIP3 ATP1B1 LDHC PGRMC1 ERBB4 MT-ND2 DYNLRB1 GAD1 GRIN2A ATP1B2 RPL13A CAMK2G CALM1 CXCL14 RTN1 RTN3 PTCHD4 ITGB5 FAIM2 HSP90AA1 SYT4 DNER RP11-219A15.1 BIRC5 MAP4 ATP1A1 TMX4 CALM3 PRKAR1A SLC1A2 MT-ND3 NMNAT2 EGFR BCL11B CA2 DGUOK TMOD2 BCAT1 RGS12 SPHKAP RNF208 SERPINI1 SCAMP5 OST4 PCDHAC1 ATP6V1G1 PPP3CB UBB PARP14 ATRN GABRA1 GRIN3A PTPRM ARL2BP ITM2B UQCRB HOMER1 CLU SLC38A1 TOMM7 CRIM1 NIPA1 ATP5J PSAP PNMA2 USP5 TGOLN2 SLITRK1 CMAS RPL31 PIP4K2A PSMD12 CSDE1 TCEAL3 NDFIP2 NDUFS5 SRP14 NDUFA4 RP11-111M22.2 LAMA3 GUCY1A3 GUK1 ELMO1 NRCAM AHNAK2 COX7A2L VPS35 YWHAZ JUND PGM2L1 RPL39 RPL37A KLC1 SPRYD3 ATP6V1C1 KCNC2 DUSP1 PDGFRA FTH1 C1QL2 NXPH2 CLTC NTN4 DLC1 NELL2 RPL26 PNMAL2 STXBP1 MT-CYB SNAP91 VDAC2 NDFIP1 NAP1L5 UCHL1 MBP TERF2IP SELT PTMA MAP1B FSTL5 RPL38 BRICD5 VAMP2 SERF2 PLCB1 EIF4A2 LRRIQ1 PPP2R2B CNP MT-ND5 RPH3A HGFAC UQCRH TMEM35 PRNP PREPL ATP5J2 GRIN1 PTPRT SYNPR CALM2 UQCRFS1 ADAM23 ANXA7 PITHD1 UBE2V2 MT-ATP6 NARS GNG12 TNFAIP8L3 TRPC3 AES SLC7A1 FKBP8 VDAC3 TUBB2A HRK CCK RAB2A QKI ADD2 CPLX3 RPL21 C18ORF32 RPL17-C18ORF32 ATP6V1G2 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RELN CXCL14 MT-CO1 MT-ND4 GAD2 MT-CO2 MT-CO3 VAMP2 YWHAG KCNC2 DNER PREPL MTRNR2L1 GPM6A RTN4 CNTN1 MTRNR2L12 ACTB GAD1 RASGRF1 GRIN2A RTN1 CDK14 NMBR RPL23A ZNF536 HNRNPH2 ATP5A1 HSD17B14 SNAP25 DLX6 TGOLN2 DYNLL2 CHL1 KIF1A NAP1L3 MTRNR2L8 SLC12A5 UBE2QL1 SERINC1 APLP2 GNAQ DNAJB6 SYT1 TERF2IP PCDH17 COX17 EIF1AX CEND1 ITM2B SLC6A1 ATP2B4 COX7C FAM163B RPL37A SERPINI1 NDUFA4 PGM2L1 YWHAB MT-ND2 NME1 MAPRE2 ERBB4 CLU RAB3C EGFR PCBP1 TSC22D1 CITED2 C8ORF4 ZNF385D FXYD6 MTRNR2L6 CISD1 CFL2 PLCB1 WASL CLIP3 GRIK1 CCDC115 WBSCR17 PFDN4 ALK TUBB2A WASF1 PCMT1 TRPC3 ATP6V0E2 QKI PLD3 LINC00086 FAT1 PNMA1 SYN1 MT-ND1 SYN2 FOS SNRNP25 ATP6V1A SNCB RPL15 PSAP DPYSL2 TSPYL1 HMP19 GABARAP COL9A1 ARL4C MAFB SV2C CADM2 RPS6 DUSP1 SLC22A17 PRNP PEBP1 IRS4 CNR1 ENO2 CDK5 PRKAR1A MT-CYB ASAP1 SLC39A10 SAMM50 RAB7A WFS1 DYNLL1 NRCAM NUTF2 ATP2A2 RGS12 NRIP3 PTMA YWHAQ FGF12 EDF1 NAPB MARCKSL1 NDRG4 TPI1 UQCR11 PGRMC1 BAG4 TMEM65 PRKCE C1D DDR2 WSB2 AVPR1A CALM1 FXYD7 PTPRS GDI1 NBL1 ARPP19 PCSK1N GPX4 ATP6V1E1 AHNAK ZFAND5 MGST3 LMBRD2 MZT2B FKBP1A CDK17 BASP1 MAP1B SOD1 FAM134A SCG2 SUMO2 BCL11B HRK CPLX3 FSTL5 FAM131B LPPR4 BMP2 SERTM1 NRSN2 RAB11A TUBA1A ELAVL4 CD63 RP11-111M22.2 AES ATP5G2 TMA7 PCP4L1 MYL6B KIT ITM2C MAGEH1 SPOCK3 APLP1 NR2F2 DNAJC5 TENM1 RASSF8 SERINC3 RPS15 COX7A2 NSF MORF4L1 IGF1 SARAF ETV5 SPOCK1 ACTR10 WBP2 FBXL16 TMSB10 RPH3A CCDC85B RAB6B PRPS1 MANBAL KCNAB2 UBE2N RLIM PFN1 ATP1A1 TBCA NAP1L5 AP2S1 ABHD14A STXBP1 GSK3A LAGE3 PBXIP1 NDUFAB1 MRFAP1 GNG3 BEX4 PSMD8 SULT4A1 MORF4L2 NCAM2 DOCK10 CBLN4 PCDHGA10 SNX10 NDUFB1 ARL6IP1 PPP2CB C1QBP C14ORF2 PPP2CA DYNC1I1 EPB41L3 NDUFB8 MPPED1 CCDC25 MT-ND3 FTL DNM3 ATP2B2 VGF NAT8L NDN REEP5 MPC2 NUAK1 SST MFN2 RPL7 ARL2BP SUB1 SH3GL2 UQCRB TBC1D15 C11ORF31 ATP6V0C C18ORF32 IDS ARFGAP2 RP11-20I23.1 RPL17-C18ORF32 ALDOA TUBB3 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND3 GRIN2A MT-ND2 DNER MT-ATP6 MT-ND1 MT-CO1 SLC6A1 CXCL14 PREPL RTN1 RELN MT-ND4 MT-CO3 SLC7A5 MTRNR2L12 GDI1 RPH3A VAMP2 ATP1B1 COL5A2 SYT1 SCD5 SERPINE2 MT-CYB GNAQ PTMA APP SPOCK1 MTATP6P1 PCBP1 MT-CO2 DPP6 PHYHIPL ATP6AP2 RGS12 RP11-111M22.2 CFH NR1I3 SYNGR1 SPOCK3 MAP2K1 CKB CALM3 MTX3 GRIN1 FXYD7 SST ENO2 GNG3 FTL MAP1B MYL12B PRKCB TRPC3 NDRG4 ATP1A3 BEX1 FABP3 BSCL2 BCL11B ZFHX4 NPNT OLFM2 ATP6V1B2 SYNGR3 RTN4 SNAP91 ERBB4 PNMA2 GAD2 PPP2R4 DLX6 NRCAM PPP2CA HMGCR PGRMC1 PREX2 ASCL1 MAP7D1 TSPYL4 ITGA6 CCDC115 PLP1 ITM2B DUSP6 ALCAM SV2C GHITM DBNDD1 CAMK2G STMN1 SLC6A17 BNIP3 ADSS AEBP1 YWHAG GDA SLC25A48 PGM2L1 CAMK4 GAD1 MTRNR2L1 RAB6B SNAP25 PLCB1 SNRPN RLIM KLC1 C11ORF31 HSP90AA1 RPL35 NUAK1 PRKCE PROX1 UBE2N DOCK10 ATP5A1 ATP5G1 ELAVL2 TMSB4X SSBP3 ATP2B4 GPR158 ARL6IP5 FSCN1 RCAN3 SDF2L1 DYNLL1 NR2F2 CADM2 ATP2B2 MTRNR2L8 GRIN3A PFKP DYNLL2 SERINC1 RPL12 PCDH17 TCEAL5 COL21A1 TAGLN3 RTN3 RAB11A DNAJC6 IDS RP11-219A15.1 RPL13A NSF PTGDS RPL41 NGRN HNRNPA1P40 PCDHGA5 PCDHGA10 PCDHGA6 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-ND2 MT-CO2 MT-CO1 MT-ND1 MT-CYB SYT1 MTRNR2L1 MT-ND3 MT-CO3 MT-ATP6 RAB3B APP ARL4C SCN3B FSTL5 NRCAM SCN1A MTATP6P1 ZNF385D ATP1B1 CALM1 PREPL CPLX2 NFIA MAPRE3 RTN3 OR6D1P BCL11B PJA2 UQCRB MED10 NECAB1 OCIAD1 FAIM2 MT-ND5 GRIP2 SNAP25 PTCHD4 CLU ARHGDIG RPS28 TMA7 TERF2IP PDGFD RPH3A TMEM130 B3GALT2 ARL4D TOMM20 YWHAG ZFAND5 UQCRQ BRICD5 HILPDA CADM3 ALS2CR12 SCG2 CLSTN1 ACTB EGFR C11ORF31 RPS4X MTRNR2L8 YAF2 RABAC1 MT-ND4L KCNAB2 CALM2 GRIK1 SPOCK1 EXTL2 EYA4 TENM1 BEX5 MTCH1 PPP2CA DPYSL2 YWHAZ DKK3 INA STK39 MRPS21 MTPN YWHAB SARAF TMEM255A PFN1 GOLIM4 ATP5G3 CITED2 CDR2L SULF2 TOMM34 PLS3 CTBP1 PEA15 PRKACB DYNC1I1 NARS RPL23A MAP1LC3A DCTN3 ABHD14A RTN4 CD99L2 BIRC5 CA8 DPP6 KIF21A GLO1 SLC6A1 OPRM1 PLAC8L1 TXNDC17 PCMT1 ATP5G2 RPS26 DNM3 SERINC1 VAMP2 RPL21 COL25A1 GAD2 PPP3CB SLC39A10 PDGFRA PEF1 PTPRS TOX SCN2B RPS15 SEZ6L2 RNA5-8SP6 COX6C GPM6A HDLBP CLTC CD24 CRTAC1 MTRNR2L12 VWA1 BASP1 MIR6723 PCDHB2 IDH3A RPL32 FAM219A PTN PPP2CB SERPINI1 SERF2 LAMP5 AEBP1 SQLE HMGB1P35 CALM3 KIT DNAJB6 MYL6B SLC1A2 PLD3 AES PSMD2 TUBB4B ALDOA ANKRD18A PPP3R1 MIF PCDHGA6 DNAJC21 TBC1D15 SYTL2 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-ND4 MT-CO2 SNAP25 MT-CO3 DNER CCK SLC6A1 HSP90AB1 KIT MT-CO1 YWHAB RPS28 GAD1 RTN1 GAPDH ATP1B1 CKB GRIK1 HSP90AA1 FXYD6 MT-ND2 EIF4G2 PRKAR1A TUBB2A CALM2 RAB3B RPL37A NXPH1 MRPS21 GRIN1 PPIA CREG2 GDI1 ARL4C STXBP1 APP NDUFA4 CLSTN1 GUCY1B3 NAP1L3 EIF4A2 PEBP1 TMSB4X RPL26 DPP6 RPL41 CXCL14 PSAP RPL32 SV2C ACTB PRNP GAD2 GABRA1 ENO2 RHOB RPL13 GPM6A RTN3 RPS12 ITM2C AES SEPW1 NAPB TSC22D1 NPTXR RPS4X SERPINI1 PKM PPP2R1A MGST3 YWHAH ITM2B RPS27A ATP2B2 RP11-111M22.2 SCD5 KIF1A GNG3 PHYHIPL TMSB10 CDH13 VSNL1 ARL6IP1 TRPC3 AP2M1 SLC22A17 RTN4 RPS15 YWHAG TOMM7 SARAF SCN2B FABP5 NCBP2-AS2 NAA38 GPX4 CALM1 RPL11 DCTN1 SPOCK2 SPOCK1 GLO1 NGEF SYT4 BCL11B ALDOA B2M DLL3 TUBA4A DYNLL2 PGRMC1 GNB1 MAGED1 SCN1A ATP5J COX7C PCMT1 TRIM37 RPL38 APLP2 RASGRF1 POLR2I CRTAC1 SPRYD3 USP5 RELN ATP6V1E1 PMEPA1 ATP6V0B EGFL7 CD63 ANXA7 RAB3IP TCEAL3 ATP1A1 PRDX2 OCIAD1 ARF5 MAGED2 MAFB UCHL1 NFIA PCDHA9 PGK1 PTPRN COX4I1 CYB5R3 TSPAN7 RSL24D1 ZBTB20 COX6A1 KCNJ10 KLHL12 RRM2B POMP TERF2IP TOMM34 JUND PDP1 CRABP1 KCNAB1 RPL10A BRK1 ATP1A3 NAP1L2 WASF1 ROBO2 EYA4 FAM134A CLU UQCR11 TUBB4B PRKCB GRIN2A TUBA1B ID2 SPARCL1 CYP2R1 AP2S1 STMN1 SLC9A6 RPL13A RGS12 CBLN4 SERINC1 GHITM UBC CLIP3 ARF3 C1D PTCHD4 AP1S2 ATP5H PFN2 HMGCR EID1 SYT11 SCN1B RPL31 UBE2E3 MAP1B TMA7 KCNC2 ATP6AP2 SYTL2 RP11-20I23.1 ATP6V0C KCNA2 MT-CYB KCNIP1 OPA1 HSPA8 SNCG CTU2 ITFG1 CYFIP2 SNRNP25 CPLX2 PRDX5 PGAM1 VAMP2 EIF1 VSTM2A CCDC115 BAD STX1B MPC2 EGFR C11ORF31 COX6C PPP1CB NGRN RPL7 B3GALT2 PLD3 VAT1L NDUFB3 CRYAB SCD WBP2 CADM2 NDUFB4 DDR2 NDRG4 LAMP5 FAT1 SUB1 UBE2V2 NDUFA11 STOM LIMK1 MAP1LC3A MRAS RP11-632C17__A.1 ADAM23 CPLX3 C14ORF2 CBX6 CFL2 CHGB BSN FSTL5 MANBAL CALM3 GPR88 RNF11 EHD3 MAL2 ARL6IP5 CACNG3 FAM3C C10ORF10 PRDX1 SEZ6L2 PCSK1N TCEAL7 GPR158 NEFM GSTT1 RHEB MTRNR2L8 MTRNR2L1 SOX2 CFL1 CAB39 TPGS2 PTPRM IFI6 SRM FAM127A RAB6B DYNLL1 NIPA1 MT2A SERF2 C2ORF47 ZBTB18 BEX2 BEND5 NDUFB8 SCAMP5 TGOLN2 AP2B1 NRCAM ASPDH NAP1L5 FAIM2 DNAJC6 RPS3A SLC7A2 SOD1 MBP MT-ND1 PEA15 RBX1 LUZP2 ATP5I SULT4A1 XAF1 PHB THY1 B3GNT1 PRKACB MAPK1 LINC00116 ATP5G3 CCDC25 PRDX3 PGD HS3ST5 PNKD C1QL1 MRPL55 PNMA1 PLCB1 TMEM130 FTH1 CEND1 SYNJ1 SPCS2 MFSD6 RPL39 C1ORF52 CYCS CAP2 MDH2 SSTR2 CDC37 MYL6 KCNF1 SLC25A4 TAGLN3 GSKIP RPS19BP1 ACOT7 NCALD VDAC2 GSTP1 MRPL52 SLC24A2 MZT2B GABARAPL1 ENO1 GOT2 RPH3A COX7A2L SUMO3 RHOA ANO3 NDUFS5 LDHB C6ORF1 MTRNR2L12 CMPK1 CETN2 ACLY LAP3 RPL18A CIAPIN1 ATP1B2 DNM3 SRP9 TCEB2 KCNMB4 YAF2 ARPC4 WLS ZFAND5 COX6B1 WBP11 PTGES3 LIG1 SLC25A22 FBXL16 PIK3C2G AKAP12 DCC CRKL UQCRB UBE2N NDUFA5 MAPRE3 ATP5O EPDR1 SELT MTCH1 C12ORF57 MAP1LC3B RPL21 ABHD14A TPI1 FABP3 USMG5 LDOC1 PINK1 BEX1 EFHD2 FSCN1 STMN2 VPS35 DGUOK OAZ1 FLOT2 PAPLN FTL PIP5K1B ZNF536 TUBA1A FXYD7 SFRP1 NELL2 AP3S1 ADARB2 SUCLA2 CD24 PREPL UQCRC1 CERS6 SNN CLIC4 KCNH5 GMFB CD99L2 PPP2CA GRIP2 MT-ATP6 CISD1 ATP5J2 STRAP MAP2K1 ZMAT2 BEX4 SNAP91 COX7A2 HNRNPH2 RPL23A ATP6V1C1 SLC22A4 TMEM59L RASGRP1 KIF5A RCAN2 TMEM147 PSMC5 NR2F2 NDRG3 DSTN DIRAS1 OXR1 UBL4A EIF1AX HAPLN1 MPPED1 MT-ND3 RAB6A PPP2CB CXXC4 RPL17 ATP5G1 SCN4B TCEB1 KLC1 SRP14 MLF2 FUNDC1 EFR3A CABP1 COX5A LMO3 FBXW11 APEH CDK17 PNMA2 ETS2 SYN2 PPP1R7 AP1S1 BIRC5 CDC42SE2 TRIM36 SYNGR1 UBE2M NMNAT2 RHBDD2 MRPL33 ATP6V1F ASCL1 GRINA CDK14 SPTBN1 POLR2M TUBB4A CDH8 ISCU RPL17-C18ORF32 DOCK10 GOT1 ATP6V1G2 RNASEK-C17ORF49 NSF BSCL2 RPL3 GABARAP EPHB6 IDS NDUFA13 TUBB RP11-219A15.1 CAPZA2 MIF AC244489.1 PCDHGA6 PCDHGA5 PCDHGA10 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B TMSB4X SNAP25 CALM3 RAB3IP SYT1 GAD2 MT-CO1 FAIM2 ITM2C RTN3 NECAB1 MT-CO3 RPL37A SLC6A1 RPL26 OR6D1P RPL39 COL25A1 ARFGAP2 CADM3 DCLK1 SERINC1 RPL41 CIAPIN1 BSCL2 ATP6V0E2 RPS15 MT-ND2 GRIK1 RTN4 RPS28 SPOCK1 PTCHD4 FTH1 GAD1 NDUFV1 GRIN3A EYA4 TMEM130 ARL6IP1 RPL36A STMN1 MRPS21 NRIP3 CALM2 MT-CO2 ARF3 DNER EPDR1 SLC7A8 IDS RPL23A CDH13 TBCA KIT DKK3 SYTL2 KIF5A RPS6 RAB3A UQCRB GUCY1B3 TIMP2 USMG5 SLC39A10 ARHGAP35 PET100 HOMER1 HCN1 MANBAL SNRPN ITFG1 MYL6 SUMO1 NDUFB8 KLHL5 TKT VPS35 CLU ANXA7 NDUFB1 JUNB TMEM255A RPS27A RHEB NDUFA1 STXBP1 APLP2 RPL31 HSP90AB1 ARPP19 RP13-492C18.2 CFH GRIN1 EDF1 MAGED1 GNB1 NUDT21 DIRAS2 COX7A2 OPCML CCK GAPDH KIF21A ATP1A3 FSTL5 PRKCB ATP5J2 ARX ATP1B1 LMBRD2 NCEH1 ATP11C COA3 COX7C EBF4 YWHAZ PRKAR1B TMA7 NTN4 WBSCR17 SNCB ENSA SLC12A5 FAT3 PDCD5 MAP2K1 EIF1B TGOLN2 SCD5 SDF2L1 NFIA MAPK8IP2 PKM TUBA1A RTN1 SYNGR3 SCN3B NAPB RPL10A ATP5H SV2C ITM2B BEX4 MMP24-AS1 PRKCE MAP1B HS3ST2 HMP19 ARL6IP5 GDI1 LHX6 RPL21 LAMTOR2 SARAF COX4I1 PPP2R2C ARL4C CPNE8 MZT1 B3GALT2 HMGCS1 GRIP2 ATRN QKI CRH MAPRE2 CHMP4B PNMA2 MAFB ATP6V1A SLC22A17 PHYHIP GRIN2A MAP2K4 MYEOV2 FKBP4 CNR1 WDR47 PTPRN UBC TUBA4A ATP2A2 SYT13 RAB3C LMO4 NXPH1 SPARCL1 INSIG1 D4S234E ELMO1 C19ORF10 SLC24A3 LDHB FAM127A KRAS FAM163B KLC1 RPL32 CHCHD2 RP11-111M22.2 VSTM2A MAF PRKAR1A TMSB10 FAM174A MT-CYB QDPR ACTB NUDT4 AZIN1 TMEM59L FXYD6 MT-ND3 TCEA2 PTPRT PSMA7 LMBR1 SLC9A6 ATP6V0B POLR2M VSNL1 RPS3A MT-ND4 EIF1 UQCRC2 RPL18A SIGIRR ATP1A1 SPOCK2 MT-ATP6 NDFIP1 TM2D3 APLP1 ERBB4 CD99L2 KIF1A COX8A YWHAG NDUFA4 AP2B1 RP11-20I23.1 GABARAP C18ORF32 RPL6 ATP6V0C RPL17-C18ORF32 NSF GTF2H2C_2 LAMA2 GPR98 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYT1 MT-ND3 MT-CO1 MT-ND4 MTRNR2L1 ZNF385D RELN SCG2 CALM1 GRIN2A MT-ND1 RPL41 SPOCK1 MT-CYB CXCL14 PNMA2 SLC6A1 HSP90AA1 PLCB1 PRNP MT-ND2 PRKCB ACTB REEP5 FSTL5 CNTN1 CAPZB SLC12A5 CDK5R1 RTN3 HSP90AB1 CNR1 MT-ND5 MT-CO2 STMN2 KIF21A COL25A1 DNAJB6 ATP5I QKI GAD2 SEZ6L GPM6A STMN4 MT-ATP6 CALM2 MTRNR2L6 DNAJC21 TBC1D15 USP5 NDUFS5 RPL21 SPOCK3 MAP1LC3A ARL8A RPH3A CDC42SE2 CLTC B3GALT2 ALDOC FBXL16 STMN1 SYT17 RTN1 ELAVL4 EIF4G2 TCEAL7 CKB HS3ST5 LMBRD2 CADM2 OXR1 SCN7A POLR2K AP3S1 RAB6C-AS1 TPD52 RGS12 PEBP1 PGM2L1 YWHAZ GAD1 YWHAB OPA1 MAP2K4 MT-ND4L TAF7L GABRA1 B2M RHBDD2 ALCAM IDS TALDO1 IQCK BCAS2 NR2F2 RTN4 RPL26 GDI1 TIMP2 ISCA1 RHOA FAIM2 KCNAB1 ROBO2 ACTR6 NAPB PRIM1 HSPB8 GLRA3 ATP1B2 SEZ6 TRIM36 PTCHD4 EPS15 GAPDH GRIK1 SNAP25 PTMA SSTR1 ATP6V0E2 COL5A2 SLC39A10 MAPK1 RNF11 PDGFD ARHGAP35 ARL8B FLOT2 KAL1 LAMP5 RAB3C VSTM2A CRIM1 HMP19 ENO2 MAPRE3 C8ORF4 TMSB10 GRINA COX4I1 MED10 PPP3CA ATP5O SCOC SLC7A8 CCDC154 TMX4 ACTG1 NDRG4 ITM2B NDNF LUZP2 PDE1C PRUNE2 KIF1A PDP1 ADAMTS6 ATP1B1 CLTA TUBA1B KIAA1211 TM2D3 STXBP1 PFN2 MTRNR2L12 AES CTGF PGRMC1 SYT3 LANCL1 NXPH2 TERF2IP HSPA4 SCN1A CNIH3 DKK3 PRELID1 NFE2L1 ATP6V0D1 ATP5G3 MRPL55 SERINC3 SCN2B MTATP6P1 SYTL2 RAB3B GABARAP BSCL2 RP11-20I23.1 PTPN20A ATP6V0C NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RELN MT-CO3 SLC6A1 SST MT-CO2 CXCL14 RAB3B CRH CCK RTN3 PRNP MT-ND2 CLSTN1 CLU ERBB4 CBLN4 MT-CYB DNER RTN1 GAD2 APP MT-ND1 SPOCK3 ATP2B2 MT-ND3 GRIK1 FSTL5 NAT8L EPHB6 MT-ND4 SNAP25 PCDH17 HSP90AB1 EIF4A2 MTRNR2L1 ARL4C PTPRN H2AFZ ITFG1 ATP1B1 GOT2 NPTXR DPYSL2 SERINC1 ARL6IP1 MAP1B PPP2R2C SPOCK1 HSP90AA1 TSPAN7 KIF1A NDRG4 ITM2B BIRC5 ATP6V0C DNAJC5 SLC12A5 WLS SNX10 PJA2 ATP1A3 MYL12B CAP2 RPS27A SYT1 PSAP SPCS2 RPL36A TOLLIP TMX4 GAPDH SYNJ1 PET100 MTRNR2L12 PRKAR1A CXXC4 RPL35 FXYD6 PCDHA4 OXR1 GABRA1 RP11-20I23.1 SERPINI1 STMN3 CALM1 SCD5 SSTR1 PRKCB RPH3A HAPLN4 RAB3C TMEM59L ATP1A1 RPL41 ZFAND4 RPS28 PPM1A STXBP1 GPX4 CHL1 GNB1 ELAVL2 PCDH19 SPTBN1 VSTM2A YJEFN3 DOCK10 C1ORF56 NCAM2 STMN1 PEBP1 MORF4L2 MT-ATP6 SLC38A1 TPGS2 CD63 FGF12 ZNF385D RNASEK-C17ORF49 TCEAL7 C6ORF141 PKM MYL6B PNMA1 VAMP2 SYT11 SERINC3 CRKL ATP6V1C1 SMS LYNX1 RPL37A GRINA ZNF536 CYP26B1 CST3 SYT17 CABP1 JUND NHP2 OPA1 MAGEH1 PREPL NSF SQLE PPP1CB CADM3 SGCD DRAP1 KCNC2 NDUFA4L2 PEG10 TMSB4X SCN1A MRPL37 CAMK2D GPR88 CA11 SCOC KAL1 MRAS MAPK1 SCN2B RAN ATP5E SLC35B1 NGFRAP1 NPAS3 ATP2B4 GAD1 RSL24D1 TEX2 TSPYL1 CALM3 NDUFA2 APLP2 ROBO2 GLIS3 COX7B DKK3 CA4 CNTROB ARPP19 USMG5 WBP11 TBCA TRPT1 COL5A2 ATP6V1A PFN2 C1QBP PGK1 STMN2 DIRAS1 CNTNAP5 DNAJB6 DUSP4 NMBR RNF11 SCN1B MPPED1 PDCD5 LINC00087 TXN ASCL1 CD59 FARSA PINK1 THYN1 GRIP2 CYFIP2 RPL39 ALCAM MTRNR2L8 NAPB SNN NHP2L1 RAB6B PTMA ATP6V1G1 RAB11A NNAT RPL13A LYSMD2 RTN4 SYNGR1 ATXN10 EIF4G2 PSMD2 AKR1C2 COX6B1 ACOT7 NRCAM AP2M1 MYO1B ATP5C1 SCAMP5 AES ATP5G2 FSCN1 DCLK1 RABAC1 MAP7D1 NOV GLRA2 KLC1 SAMM50 SERPINE2 SEZ6L2 SEMA5A RPS2 ARL6IP5 NPTN TCEAL3 CTSD NAP1L3 ATP6V1B2 CKB PRKACB PARM1 KCNC3 CISD1 KCNAB2 TIMP2 CDKN2D UBE2N OLA1 SV2C BEX2 RPS6 SCN3B CHN1 CTBP1 TPPP EGFR MAGED2 CDC37 FAIM2 DSTN CAMK4 MRPL55 PHYHIP UQCRC1 UBA52 PTPRS HGFAC SLC9A6 ACTR1A PRKCE HMGCS1 SNCA HMGCR CNR1 RAP1GDS1 PLD3 UQCR10 ACTR10 OPCML C1ORF52 GUCY1A3 ATP2A2 FBXL16 MAGED1 SOD1 NDUFA13 TMEM179B UROS NDUFC2 MED31 GRIN2A FNDC4 RPL8 D4S234E UBA1 GSKIP RPL17 SLC7A8 WBP2 SCG2 FKBP8 CTNNB1 RPL26 SULT4A1 GDI1 SYT4 PSENEN FAM127A STRAP YWHAG DGKG CAB39 CBX6 NECAB1 NBL1 UQCRQ SOX9 WBSCR17 MAP7D2 CDH8 GPM6A WDR47 HTR2A FTL B3GNT1 RPL23A PRELID1 CX3CL1 UBE2E3 AP2B1 ETFB TMOD2 DLL3 SYT13 SYNGR3 RPL6 EHD3 FIBP GNAQ SYN2 FAM174A OR6D1P NGRN CFH BSCL2 IDS ATP6V1G2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L12 MT-ND4 MT-CO3 MT-CO1 MT-ND1 SLC6A1 MT-CO2 MT-ND3 RAB3B MT-ATP6 MTRNR2L1 MT3 YWHAB ATP1B1 CNTN1 HSP90AA1 SYN1 MT-ND2 PGK1 MBP ARL6IP1 CPLX3 ATP2A2 PTGDS CDK14 NECAB1 SYT1 RELN SNAP25 TPT1 KIT RAB3C SPOCK1 PRKCB GNB1 PTPRM RAD23B CTNNA2 SERF2 PTPRT LMBRD2 ERBB4 SYNJ1 AC244489.1 ZNF536 CALM1 FTH1 AP1S2 RPL11 COX4I1 MKX PREPL ATP5G3 RPL37A FSCN1 SPOCK2 AVPR1A STMN2 ARL6IP5 RAB3IP SEPW1 NHP2L1 HSP90AB1 APLP1 GDI1 NGFRAP1 RPL31 STUB1 SNCB PCDH17 SERINC1 KIF21A FXYD6 APP VAMP2 TSC22D1 UBQLN2 TP53TG5 PPP3CB CADM2 RGCC ATP5G2 AZGP1 OR6D1P CXCL14 CALM3 FIS1 RPL39 RAB3A TCEA2 EGFR RPS5 MAFB SV2C UBA52 ATP5F1 CKB TMOD2 NPTN GPM6A C16ORF13 NUAK1 HHATL GOLIM4 ELMO1 ROBO2 FAM107B GLO1 CHMP4B YWHAH RPL3 BNIP3 UQCRHL ALDOC MT-CYB NAP1L3 RNF11 TMEM258 SLC12A5 CMAS ATP6V1A TMEM144 THBS2 MTPN GPRC5B PAQR8 FAT1 ATP6V0E2 CCDC154 PACSIN1 PGRMC1 DPYSL2 SULT4A1 CLMN PSAP MAP1B SRP14 CRIM1 PI4KA COX5A KCNAB1 NDFIP2 GABRA1 C12ORF49 DNER GTF3A MT-ND4L KLC1 RPS4X CRYAB PKM CNP CPLX2 PDP1 CLTA TERF2IP CCK RTN4 LDHB CNDP1 NR1I3 SSBP3 SERPINI1 NDRG4 KCNMB4 DNAJB6 STX1B YWHAG ARL4C MTRNR2L6 COX5B YIPF3 PLCB1 ELAVL4 ITM2C RAB1A DYNLRB1 CFH RPL41 MBOAT7 RPL6 RPL21 ABCA8\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 SYT1 RAB3B DNER MTRNR2L12 MT-CYB MT-ND2 MTRNR2L1 APP MT-ND1 SPOCK1 MT-ND3 RTN3 SARAF SLC12A5 NRIP3 VAMP2 GAD2 DNAJC21 SLC6A1 SV2C KIT RP11-111M22.2 RAB3IP PGAM1 ACTB MT-ATP6 ITFG1 TMSB4X APLP1 OR6D1P SPOCK2 KLC1 SLC9A6 ARF1 PTPRT ATP1B2 SERINC1 LAMP5 PCDHA4 KCNA2 ATP1B1 RAP2A UCHL1 CNTN1 MT-ND4 FTH1 NDFIP1 NFE2L1 RPL15 WBP2 SYN2 STXBP1 TMA7 NPTXR HSP90AA1 SCN1A RP11-219A15.1 YWHAZ CREG2 NRCAM TMOD2 ATP6V1A MYRIP SPHKAP SCAMP5 PHYHIPL NMNAT2 ATP1A1 NPTN UBQLN2 ATP6V0B CNTROB ATP6AP2 CALM1 C14ORF132 PAFAH1B2 BEX4 ITM2B PMEPA1 ACACB ENO1 C10ORF10 NGFRAP1 PRNP LPPR4 MAPRE2 HMGCR PTMA CLTB RLIM TPI1 NAP1L5 COTL1 RPL10A SDCBP PPP2R2C ATP2B2 SELT PGRMC1 COX6B1 PREX2 SGCZ SPRYD3 CAMK2G CLU ZNF385A GNB1 CCK RAB7A NAP1L2 THY1 LANCL1 HMGCS1 NEK7 CDK5R2 SNRPN RPS19BP1 NBL1 SH3RF1 TSC22D1 DUSP6 PJA2 LAMTOR5 PPP3CA GOT2 PREPL LRRIQ1 BCL11B MAP1B NDRG3 CA8 PEBP1 HCN1 GLUL CADM2 SPCS2 SLC22A17 UBE2QL1 GRIN2A DNAJB9 DMTN EGFL6 RAB3A RPL38 SLITRK1 GTF3A RTN4 CPNE8 C1QBP VAMP1 GPX4 FXYD6 ARL6IP1 ATP11C KCNAB2 NFIA OST4 NDUFA11 ATP5B CD99L2 FTL YJEFN3 PKM PROX1 DNAJB6 RAB4A NAPB ATP2A2 PLCB1 MORF4L1 ZFAND5 STX1B PNMA2 CPLX1 CRIM1 SSTR2 SKP1 UQCR10 ACP1 MBP IDH3A PRKACB GNG3 MTND1P23 GMFB LUZP2 KCNH5 THSD7A MGST3 MTRNR2L6 SLC6A17 RAB3C SRP14 ATP6AP1 SFRP1 PTCHD4 B3GALT2 CAP2 EIF4A2 RNF11 MTATP6P1 C1ORF52 HNRNPA1P40 BIRC5 NGRN RPL41 C18ORF32 B2M PGK1 RPL17-C18ORF32 RPL21 SYTL2 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SCG2 ATP1B1 CKB GAD2 ERBB4 WASF1 CBLN4 SCD5 TGOLN2 CAPZA2 AP2M1 ITM2B MYO1B BEX2 MT-CO2 IDS THY1 SPOCK1 RPL37A RELN MRFAP1 SLC6A1 PCDH17 KCNC2 DNER PPP3R1 OXR1 TBC1D15 SNAP25 UBQLN2 RPH3A ASIC4 TRPC3 GDE1 UBA1 NGFRAP1 GRINA TIMP2 CLSTN1 ACTR10 SPOCK2 REEP5 SFRP1 RNF11 CBX6 FAIM2 ATP2A2 H2AFZ AP1S2 CABP1 RPL21 NDUFA1 PRKCB PTPRS KLC1 UBC HSPE1 ENO2 SPOCK3 HTR2A IDI1 FTH1 NRSN2 PREX2 VSTM2A SLC2A1 SRP14 ARHGAP42 IPCEF1 RTN3 KAL1 SERPINI1 SYN1 UCHL1 RAN B3GALT2 APP CLIP2 ACLY CTSD EIF4A2 NHP2L1 NMBR NDFIP2 TOMM20 TOX3 ITM2C PTPRT RAB3B SLC1A2 GABARAPL1 CADM2 ACTB CAPZB MTRNR2L8 BCL11B NEGR1 CLPTM1 FAT1 NCAM2 CMPK1 DCLK1 CALM3 LPPR4 FXYD6 GLUL CTNNB1 EDF1 PODXL YWHAG HS6ST3 DDR2 KCNIP1 EIF1AX RGS12 PRNP TCEAL7 MT-ATP6 RPL13 SYTL2 SYT17 RP11-166O4.4 FBXL16 SYT1 ATP6V0B SV2C RTN4 KCNA2 PLD3 MT-CO1 TSPAN7 TUBB2A CDHR1 COX5B EIF1 GRIN1 NFE2L1 ATP6V1B2 ARL6IP1 ARL8B KIF21A MTRNR2L12 RPL39 OLFM1 SPRYD3 PTPRM BEX4 C1D PSAP CNR1 PPP2CB ACTG1 SLC7A8 COX7C MTX3 PTMA ETFB BTBD10 CHMP5 NXPH1 ATRN SCN1A ATP6AP1 FBXL15 RPL35 RPL31 RPL41 NFIA RPL36A ALDOA RPS28\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-ND3 MT-CO2 MT-ATP6 SYT1 MTATP6P1 MTRNR2L1 DNER MT-ND1 MT-ND2 SNAP25 MT-CYB IDS KIT MTRNR2L6 ATP1B1 ARL4C SCD5 TUBA1B NDRG4 TMSB4X SCG2 ITFG1 YWHAZ EIF4A2 RELN MTRNR2L12 SERPINE2 GDI1 PRKCB TSC22D1 NDUFA13 RPL38 ATP5E CALM3 RTN1 MTRNR2L8 POMP PNMAL1 RPS12 TUBA1A CKB PHYHIP MT-ND4L OLA1 PPA1 NDUFA1 SLC6A1 NUDT21 APLP2 NAP1L2 GRIN1 DPP6 TBCA VAMP2 PPM1A NDFIP1 USMG5 PPP2R1A MORF4L1 RPL37A STMN2 SERP2 ATP5I PEBP1 CALM2 INA PREPL SPOCK1 DSTN CADM2 RAB6A ABRACL PTCHD4 SNRPN GAD1 OLFM1 ATP1A1 ENO2 GAPDH RTN3 MT-ND5 COPE NUTF2 UBL4A LAMTOR1 COX7C CTNNB1 TMEM35 HPX SDCBP SH3GL2 SCAMP5 MANBAL RNF11 TPI1 GOT1 UQCRC1 COPRS ARF5 BEX1 C8ORF4 YWHAG RPL31 ATP6V0E2 PPIA SNX3 ARFGAP2 KCNAB1 OCIAD1 ATP6V0D1 HSD17B14 ARF1 TERF2IP PGAM1 TOLLIP MAP1LC3B KCNAB2 PROX1 SNX10 MDH2 CPLX3 RPL8 RAB3C ATP6V0B APLP1 CA2 VAMP1 BEX4 PRPS1 SERF2 HSP90AB1 UBB GPCPD1 CDH8 GNAQ TPPP TM2D3 POLR2K BRK1 AVPR1A PSMB5 PGM2L1 PRIM1 MORF4L2 NDUFC2 ZFHX4 DPYSL2 RPL3 MAP7D1 DYNLRB1 RFK SLC22A17 MDH1 CXCL14 GNB1 ATP5B IQSEC1 ENC1 CTNNA2 RPL26 PTPRN2 SLC25A22 MRPS21 PHYHIPL C6ORF1 DYNLL2 STUB1 GFRA2 LDHB ARF3 RTN4 RANBP1 SRD5A1 FTL NRIP3 C11ORF31 NTHL1 SUMO2 ELAVL4 ITM2B UQCRH PJA2 MZT2B ETV1 PAM ATP6V1G1 HSPE1 ACLY ERBB4 SST RAB3A RAB3B RPL41 OAZ1 CHMP5 RGS12 PTMA COL6A2 PSMD8 TMEM141 OXR1 CISD1 CCK NGFRAP1 TPGS2 CSDE1 ATP5G2 UQCRB EFR3A MAPRE2 GRIN2A SYNGR1 NDUFS5 STMN1 FBXW11 CHCHD2 EIF1 SYN1 CHN1 APP PCP4L1 EIF1B RPS10 CLSTN2 SELT ITM2C GUK1 DNAJB6 TUBB6 DMTN ARL6IP5 PAFAH1B2 CPE PRDX3 DUSP1 PDP1 SNCB CYC1 TCEB2 BTBD1 MAPKAPK2 RPL15 ENO1 AP2S1 GBE1 CCDC85B STK24 HMP19 VAT1L STXBP1 SARAF JAKMIP1 ATP1A3 KLC1 ATP6V1B2 LANCL1 NMNAT2 SERINC1 NPTXR LINC01314 ATP1B2 THY1 SHE RPS27A CCT5 CEND1 NDUFB1 TRPC3 RPS26 IGF1 PRDX2 CBX6 RAB1A SLC38A1 ATP6AP1 ID2 ANAPC11 CAPZB TCEAL2 PMEPA1 PSMD2 MAP1B RPL13A TMEM14A RPL23A BCL11B RPS28 VPS35 C1QL2 RPL6 TPT1 NAP1L5 PINK1 SUMO3 STMN3 BNIP3 YWHAH CLTB RRAGA SLC25A5 GNG12 GRINA PET100 BSN RPL17 ATP6V0C CFH RP11-20I23.1 RNASEK-C17ORF49 GABARAP RPL17-C18ORF32 PCDHA4 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SLC6A1 MT-ND4 NGFRAP1 RAB3B MT-ND1 SNAP25 NRIP3 VSNL1 GAPDH MORF4L2 GAD1 MT-CO1 MT-CO2 RPL13A C14ORF2 PLD3 USMG5 VAMP2 RPL41 SPOCK1 OXR1 GAD2 MTRNR2L1 SERINC1 STMN3 PREPL CCK MT-ND2 CKB YWHAH CALM1 MT-ATP6 ZNF385D SUB1 MPC2 PTPRT CFL1 NFE2L1 SERPINE2 RPL37A SYT1 CNTN1 HSPE1 PPP2CB ATP5E RPL32 RPL3 THY1 SYNPR TMSB10 TUBB2A SERF2 LAMP5 ITM2B ATP1B1 RPS27A ARL4C ADARB2 APLP2 HSP90AA1 NAP1L3 KIT NME1 ITFG1 SYT4 RPL26 LINC01296 SRM RPL36A EIF4A2 IFT52 COX7C CALM2 RNF11 RAB6A MT-CYB SCN1A RTN1 UQCR10 SLC12A5 STMN2 MTATP6P1 DYNLL2 SLC10A4 PTCHD4 MAP1B TMA7 ATP1A3 BEX2 EIF1AX ARL6IP1 CXCL14 RPL38 KCNAB1 TOMM7 STMN1 NSF HNRNPA1P40 TF ARFGAP2 RAB7A NCDN GPR158 TSPYL1 NXPH2 HDDC2 DNER MB21D2 NAPB HRH3 CDK5R1 TPI1 FGF12 MAP4 SV2C MTRNR2L6 KCNC2 PVRL2 TSPYL4 PSAP COX5B GTF2B NAP1L5 PIK3R1 SLC32A1 TUBA1B KIFAP3 LGI3 CIAPIN1 COX4I1 GPNMB MT-ND4L NDUFB11 LUZP2 PJA2 CLTC PNMA2 TXN JUND SH3BGRL2 KCNIP1 SYN2 ATP5J CA2 FTH1 PCP4L1 INA PPIH RPS15 GABRA1 HSP90AB1 PTPRS CLTB HMGCR GSTT1 PRKCB RGS12 ACTB PTGES3 GADD45GIP1 TMOD2 VDAC3 CHN1 MYBL1 LINC00086 CPLX2 COPE GRINA AP3S1 MLLT11 LMBRD2 ATP5J2 MTRNR2L8 ATP6V1B2 BCKDHB ATP6V0E2 GORASP2 WASL ID2 KIAA1211 NDUFB1 OLFM1 ABHD8 RAB3IP PDZD11 UQCRH PTMA ACTR10 NDUFV1 CMAS TMEM141 PPP2CA PLEKHG3 SNRPE C10ORF10 AES YWHAZ CTNNB1 NDUFS5 DSTN EID1 DMTN HNRNPH2 PHYHIPL CPE CERS6 TBCA FSTL5 RABAC1 NPTX1 GPM6A BRICD5 PSMA7 NDFIP1 RPL17-C18ORF32 STRAP IDS CRYM FAM43B PINK1 MT-ND3 GDI1 RPL17 STAG3 PNMAL2 IQSEC1 GRIP2 PITHD1 LINC00087 SCAMP5 GOLIM4 PTPRN ENO2 SKP1 TOX3 CCT5 CACNA2D2 BAG4 YWHAG GRIN1 MRPL20 TSPAN7 ETV1 ADORA1 AP1S2 PGRMC1 CNTROB CHGB OAZ1 EGFL7 PRKCE TCEAL2 FAIM2 PEBP1 TCEA2 FXYD6 CCDC85B PLCXD3 RGS4 LPPR4 CNR1 SLC8A2 SCD5 ARL6IP5 GPX4 RPL13 GNB1 ATP1B2 ISCA1 RPL35 NPTN UBA1 BCAT1 COX6C BEX4 KCNC3 APP B3GALT2 UBE2D2 SLC22A17 SEC61G HK1 ACLY SMYD2 SPARCL1 SLITRK1 MTRNR2L12 ITM2C ANAPC13 TMX4 SARAF FAM174A RIIAD1 GOT2 RPS26 UBA52 CHL1 OCIAD1 VSTM2L CYC1 SUCLA2 NDRG3 MAFB DPP6 MORF4L1 CEND1 INPP5F WSB2 RPS28 PRDX5 ATP5F1 BSG PSMD8 TERF2IP PPTC7 ATP6AP2 MGST3 LAGE3 SH3RF1 CRYAB YWHAB B2M ATP6V0C MBOAT7 RP11-20I23.1 ALDOA LMBR1 RP11-219A15.1 RPL21 AC244489.1 PCDHA10 PCDHA9 PCDHAC1 PCDHA4 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MTRNR2L12 SYT1 MTRNR2L1 MT-ND1 ATP1B1 MT-ATP6 SNAP25 SLC6A1 MT-CO2 MT-ND3 SYTL2 MTATP6P1 MT-CYB MT-ND2 SARAF GAD2 MTRNR2L8 APP MORF4L1 DNER RPS27A NRIP3 RPS6 GRIP2 KLC1 CALM2 RTN3 MAP1B CAP2 ZNF385D CLU SLC7A8 PRNP GDI1 MDGA1 GAD1 AES EFR3A TMSB4X QKI GPM6A OCIAD1 ARL6IP1 PROX1 PCDHGA5 MTRNR2L6 MORF4L2 FTH1 PSAP C1QL1 KIT IDS CKB EYA4 RP11-219A15.1 BIRC5 NDUFB8 SSBP3 KIF21A TMX4 SYNGR1 ZBTB20 SCN1A FXYD6 EFHD2 CD59 GRIN2A SLC38A1 ATP5J NARS GOT1 TPRG1L RPL39 PKM KCNC2 CERS6 CRKL PLCB1 ATP1A1 FAIM2 SERPINE2 CAMKK2 ATP1A3 CHST11 PTPRS NFIA MAFB CALM1 ITM2B PTCHD4 RAB3IP DSTN ADARB2 MT-ND5 YWHAG MAP7D1 PTMA HSP90AA1 STXBP1 EIF1 RP11-111M22.2 DNAJB6 RPL21 LUZP2 STX1A PSMA7 PACSIN1 CCK LAMP5 CADM2 RAB3B ETFB HNRNPA1P40 SLC9A6 MTUS1 CAB39 NFE2L1 POLR3H ZFAND5 TUBD1 GAPDH CDH6 SYT13 PGAM1 PGK1 SYNPR ARL4C WBP2 DPYSL2 FAM134A SPTBN1 LINC00116 FAM219A BEX2 FGF12 MGST1 TMEM35 NOS1 PPP3CA OXR1 NPTXR SLC9A1 VDAC1 YWHAZ GSKIP DNM3 THY1 MAP1A KAL1 TSPAN7 GHITM RPL17 NDUFA12 TEX15 LMO3 DDR2 RPH3A SLC22A17 FKBP8 ELAVL2 C1ORF233 AP2B1 KIF5A TMEM144 DYNLL2 NCEH1 RELL2 MAF NDFIP1 ATP11C DNAJA1 RNF208 SEZ6L2 MAP2K2 CCDC183 EIF4A2 FAM131B GMFB CDC37 UBE2QL1 DNAJC5 BAALC SCG2 RAMP1 HSPB8 B3GALT2 SEZ6 SFRP1 HSPA8 GNAQ CLTC CDKN2AIPNL RP11-345J4.4 TMLHE SLC32A1 GNB1 TMOD2 NDRG4 GABRA1 YBEY SV2C RAB11A AP1S2 PDP1 ATP2A2 CHN1 ITGA6 PI4KA NGFRAP1 TRPT1 RPL38 PNMA2 ATP5H GPR98 ISCU C14ORF2 ACTG1 SYT11 RP11-631M6.3 GPCPD1 EGFR GSK3A FBXL16 SCOC PAFAH1B2 PPP2R4 ACTB SKAP2 ATP6V1F SYT4 STMN4 PGRMC1 RPS12 KITLG PDGFRA ATOX1 DOCK10 KIFAP3 RNF11 RPL15 CNTN1 PRKAR1B TUBA1A TUBA1B PTPRN2 TCEB2 ADSS CALM3 NCAM2 PHYHIPL TENM1 RPL17-C18ORF32 KCNA2 ARF3 PSMB5 CA2 CLSTN1 CALN1 UBE2M RPL26 ENO2 RGS12 MDH2 EIF4G2 C18ORF32 CTBP1 NAP1L3 BCL11B BAI2 RPL11 ATP6V0E2 TMEM255A SERINC3 WDR47 RPS15 UTRN TXN RPL26L1 C12ORF57 SCAMP5 GRIN1 AP2M1 MTX3 CFL2 SLC2A1 TKT CNP GRIK1 ERBB4 VAMP2 D4S234E MYL6 TOX HCN1 FAT1 GUCY1B3 ATP6V1C1 LAMTOR5 DKK3 SIRPA SNRPE PCDH17 ARHGDIA OLFM1 PTPRM UQCRB CHST9 SCN1B ITM2C SLITRK1 EDF1 DNAJC6 FAM149A NAPA CADM3 RTN4 DCLK1 UCHL1 APLP2 DYNC1I1 TUSC2 GRIN3A PTPRT NSF ATP6V0C RP11-20I23.1 C11ORF31 B2M AC244489.1 TBC1D15 ARFGAP2 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MTRNR2L1 MT-CO1 MT-ND4 ZNF385D SLC6A1 SYT1 RAB3IP GRIN2A AES TCEAL3 ATP5E PGRMC1 ROBO2 MT-ND2 TMSB4X MT-ND3 GRIN1 NTNG1 ATP1B1 MTRNR2L6 ESCO2 MYO16 TPT1 RPL32 POLR2I UQCRH RCAN2 CALM1 MAP7D2 RPL31 RPS2 CDH8 DYNC1I1 TOX2 APLP2 ZNF536 AHNAK2 KCNAB1 UTRN REEP2 MTRNR2L12 ARL6IP5 PCMT1 PRKAR1B ANAPC13 SYTL5 KIT CCK PREPL DOCK10 SNAP25 RPH3A ACTG1 TPI1 MAGED1 APLP1 NHP2L1 MAPRE3 NRCAM RPS5 ATP6AP1 PCDHGA5 ITM2B OCIAD1 NAP1L3 CHST11 SULT4A1 DNAJB9 EGFR NRIP3 SERINC1 SCN1A CHN1 PRKACB TUBA1A MAP1B APP ZBTB20 ITFG1 ATRN TCEB1 WBSCR17 C19ORF70 NAPB MTRNR2L8 MAPK1 MT-CYB TMEM130 GPM6A MAF ABHD8 RTN1 SOX4 NR1I3 IGF1 AP1S2 OPRM1 GABRA1 CADM2 PNMA2 CAP2 PPM1A RBX1 PPP2R2B PTPRS IDS IGFBP5 UHMK1 SLC38A1 MORF4L1 ELAVL4 TOMM20 NDRG4 IQSEC1 UQCRB PNKD KLHL5 LMBRD2 MRPL33 NGEF NFIA GPRC5B TOLLIP TSPYL4 SYTL2 RAB3B CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO3 MT-ND2 MT-ND4 MTRNR2L12 RELN ATP1B1 MTRNR2L8 RAB3B MT-ND3 MTRNR2L1 SRP14 DNER ZNF385D TBC1D15 MT-CO2 MT-ATP6 NDRG4 GAD2 SCN1A SNAP25 RAB3IP SLC38A1 SLC6A1 RAB3C WDR47 MT-CO1 MT-CYB CALM2 HSP90AA1 CFH KIT C11ORF84 GPM6A HSP90AB1 DLX6 JAKMIP1 GNB1 PTPRT NAP1L3 APP PREPL GRIP2 CLU TMX4 STXBP1 GDI1 BIRC5 NDFIP1 SYNGR3 ELAVL4 AES SERPINI1 EFHD2 NFIA C14ORF132 ATP6V1G1 DNAJC5 ZNF536 FTL SERINC1 GPR158 DOCK10 GAPDH ATP5F1 DPP6 PRKAR1B TSC22D1 RTN4 TCEAL2 SCOC PLCB1 TF OR6D1P MAP1B NAT8L CPLX3 ETNPPL SV2C PAM RCAN2 TSPAN7 NDUFB4 CLSTN1 SLC22A17 CNTNAP5 PITHD1 NFE2L1 PNMAL1 SPOCK2 CDH13 NAP1L5 RAB4A KCNC2 TMEM35 C1D ARL6IP1 SUMO2 MORF4L2 ATP6V1B2 DPYSL2 TMTC4 KIF21A NDUFAF3 PTPN20A DLX1 CKB CRYAB CLPTM1 STMN1 STMN1P1 SNAP91 HPRT1 ACTB CTSD BTBD10 PPP2R1A YDJC RAB7A DIRAS1 NDRG2 SEZ6 SYN2 CBLN4 SCAMP5 TOMM20 ELAVL2 DCLK1 RPLP0P2 ATP6V1A SERPINE2 RTN3 SRP9 TMEM130 FSCN1 NDUFC2 YIPF3 RPL39 FAM131B ZFAND5 SKP1 CALM1 COA3 B3GALT2 EPHB6 GPX1 CCK ALDOC ITM2B GRIK1 YWHAZ OAZ1 CDH8 UQCRC2 COX7C MTPN TUBB4B EIF1AX CTNNB1 TMOD2 WBP2 EFR3A ENOPH1 GHITM GRM8 PSD3 PNMA2 KIAA1045 RNF11 QKI RNF182 PGM2L1 MRAS ARL4D C1QL2 CABP1 CREG2 CHP1 ARHGAP35 CTBP1 NCDN ARX RPS2 RHEB ADARB2 UTRN CHGB CHL1 NRIP3 CDC42SE2 TSPYL4 CETN2 PJA2 PIK3R1 VPS35 CHRDL1 THY1 TXLNB RP11-111M22.2 VCAN CD9 SEZ6L2 DYNLRB1 PRNP MYO16 ATRN SPOCK1 ARHGAP42 SARAF C20ORF24 HAPLN1 C6ORF1 PRKACB BEX2 ISOC1 PSMD2 PHYHIPL NMNAT2 SOD1 ANXA7 OPCML PRKCB GABRA1 RTN1 APLP2 PEBP1 ATP6V0E2 ADD2 MAP1LC3B KLHL5 NEGR1 REEP5 MAP4 CD24 LGI3 SCD5 PPP2R2B CDKN2AIPNL SYNJ1 MAPRE2 HMGCR PDGFRA DKK3 AP1S2 MTRNR2L6 FAM3C SERF2 RPL41 NSF SERPINF1 BSCL2 IDS DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYT1 MT-CO1 MT-CO2 DNER SPOCK2 KIT MT-ND4 SLC6A1 MT-ND2 MT-ND3 NFIA RAB3C ARL6IP1 TF RPL37A CNTN1 RPL38 GABRA1 PNMA2 GRIN2A ATP1B1 VAMP2 CDH13 AES CALM1 SNAP25 RTN1 PGAM1 CADM2 AP1S2 ATP6V1B2 RPS27A B3GALT2 PTPRN TBCB GAD2 CLU SARAF KCNAB1 FXYD6 MAP1B EPHB6 MORF4L2 PSAP ZBTB39 ATP6V0B CDK5R1 MT-ND1 FAIM2 TSPYL1 ARL4C PGM2L1 DYNLL1 RPL23A NXPH2 SLC22A17 FARSA NAP1L2 TMSB4X ID2 RPL32 CYFIP2 GRIK1 BSCL2 SLC12A5 MT-CYB TRPT1 ITM2C UBA52 NRIP3 ATP6AP2 RAB3IP MTND1P23 NGFRAP1 SPOCK1 EIF1AX ACTR10 SDCBP ELAVL4 NTNG2 NCDN INA FKBP4 PRDM16 MTRNR2L8 NDUFB8 RPL35 CSDE1 BMP3 RPL12 FAM134A RPL15 KCNA2 PSMA7 TRPC3 SCG2 ANXA7 TPT1 PNMAL2 ATP5G1 SLC39A10 MTRNR2L12 DDR2 NEGR1 RNF208 SYNJ1 MTRNR2L1 NCAM2 RPS26 STXBP1 CREG2 TPPP NMNAT2 CLEC2L SERINC3 PCMT1 YJEFN3 CBX6 FTH1 RTN4 RPL13A FAM131C OLFM2 CD99L2 TERF2IP NPTN TMEM14A ITM2B OCIAD1 PREPL TGOLN2 DIRAS3 PRKCB MT-ATP6 PTPRVP HAPLN4 LPPR4 OXR1 RASGRF1 C1ORF233 PHYHIPL EIF4G2 SLC38A1 RPL31 ASPDH PNPLA3 THY1 ENOPH1 EFHD2 CDK14 ALDOC AC244489.1 PPP1R14A DNAJC5 CXCL14 RTN3 ITFG1 ATP5A1 CNTNAP5 SMIM13 MAP7D2 MPP1 PTMA SNX3 PKM NPAS4 SKP1 PTCHD4 CAMK2G BEX2 ERBB3 UQCRC1 COX7C SLC24A2 PNP BCL11B RELN BASP1 KLC1 MAFB TSPAN7 LDOC1L PFDN4 CPLX1 ATP2A2 PRKAR1B PRPS1 DKK3 ALDH5A1 NFE2L1 SCN1A CTSD PMEPA1 TMEM160 RPS28 TSC22D1 NPTXR UBC UBQLN2 BEX1 YAF2 CRH IFI6 KITLG PLCB1 KIF21A PDGFD SYN2 CRYAB EIF1B APP ATP6V1A SPTBN1 HMP19 BRK1 CPNE2 TENM1 PPP3CB KIFAP3 DOCK10 TMSB4XP4 RASGRP1 PPP1R7 ARL8A NTNG1 DPP6 THYN1 ATP5G3 MIF RAB3B SYTL2 RPL41 IDS ATP6V0C RP11-20I23.1 NSF MTRNR2L6 NR1I3 PCDHAC1 PCDHA10 PCDHA4 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SLC6A1 RAB3B SYTL2 GRIK1 SNAP25 MT-CO1 RAB3IP VSTM2L SLC7A8 ARL4C PSAP TUBA1B ATP6V0B GAD1 ZBTB20 GNAQ KCNAB1 TBC1D15 REEP2 WDR4 PDP1 NFIA ATP1B1 RANBP1 PLCB1 RP11-111M22.2 PREPL PTPRM SNRPN PJA2 CADM2 NPPC MTRNR2L1 PIP5K1B LCP2 BCL11B OLA1 ARL6IP5 GUCY1B3 DYNC1I1 PRKCE CERS6 RAB3C RPL23A VDAC3 TM2D3 GRIN3A EPHB6 LMO3 MT-ND3 CALM2 GPRC5B SYN2 GRIP2 MYRIP PPP2CB MAP4 RCAN2 MPPED1 PGRMC1 CHMP5 UQCRB TCEAL3 SLC7A2 PI4KA ATP1A1 MT-ND1 CISD1 MORF4L2 PNMAL2 MGST3 VCAN ATP1A3 SYNJ1 WBSCR17 ARL6IP1 KLHDC3 IDS SERINC1 VAMP2 HNRNPA1P40 ARL8A PDGFRA NPTN NECAB1 LDOC1 SELT CKB COX7A2L AK5 TXLNB CDK14 MT-ND2 CDH8 TMSB10 KLHL5 MT-CO2 ACTB FIBP RBX1 ATP2B2 YWHAQ MAPKAPK2 FAIM2 DNER LAMP5 TUBB4A TOMM20 APP CNTN1 UQCR10 MAFB MTRNR2L12 UQCRH MTRNR2L6 BSCL2 RPL17-C18ORF32 C18ORF32 RPS15 PCDHA4 PCDHA9 PCDHA10 PCDHAC1 DNAJC21 CFH ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 MT-CO3 SYT1 MT-CO2 MT-ND1 OCIAD1 TMSB4X SNAP25 MTRNR2L1 MT-ATP6 CCK MT-ND4 MT-CO1 MT-CYB TM2D3 RTN4 MTRNR2L12 ATP1B1 CDK14 OPA1 MT-ND3 CNTN1 GDI1 DNER RPL31 SLC6A1 PRNP WBSCR17 TCEAL2 KLC1 YWHAH RAB3B ZNF385D TF BIRC5 PGRMC1 RAB3C PPP3CA RPL37A CRYAB BEX4 RTN3 ARPC5L TSC22D4 CLTA KCNC2 NCEH1 APP PAQR8 RPL32 ETV1 IDS COX7A2 NCDN PHPT1 RAB3IP ERBB4 PTPRN EIF1AX PTMA ATP1A1 TOX2 GAD2 MAPK1 PPP3CB SELT KIT USP5 SSBP3 SH3RF1 OXCT1 ATP5G2 ATP6AP1 HMGCS1 QKI ZCCHC12 FBXL16 DUSP6 ARF1 HMGCR SPHKAP ATP9A MYO16 PNMA2 SERINC3 RRAGA OLFM2 IMMP1L MTATP6P1 BCL11B UBQLN2 RAD23B YBEY PREPL LAMP5 FAM174A SPOCK2 TMEM65 TERF2IP NTNG1 INSIG1 BSG ATP1A3 GPM6A MT3 RPL39 ATP2B2 MAP2K4 REEP2 LANCL1 IDH3A RPS15 GUCY1B3 SLC39A10 MTRNR2L6 NUTF2 CFH MT-ND5 MARCKSL1 CTBP1 PCDHA9 MAPK8IP2 GABRA5 APLP2 SPTBN1 PEG10 KCNIP1 DPYSL2 TBC1D15 RP11-111M22.2 DNAJC21 ARFGAP2 RPL21 RELN TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 MT-CO3 KIT MTRNR2L1 SLC6A1 MTRNR2L12 MT-ATP6 ATP1B1 MT-ND4 MT-ND1 MT-ND3 MT-ND2 CDH13 PTCHD4 RAB3B DNER CCK MT-CO2 GRIN2A SARAF ARL4C SNAP25 GAD1 MTATP6P1 PRKACB SCN1A NXPH2 TBC1D15 DNM3 ATP1A3 RAB3C PRNP GRIN3A CLU FAM3C PLCB1 NRCAM MTRNR2L6 ARL6IP1 YWHAB KCNC2 BCL11B RTN3 GAPDH GOLIM4 ATP1A1 GAD2 NFIA SV2C LPPR4 GABRA1 CXCL14 ZNF385D NR1I3 RPH3A RPS26 HSPA8 RPL12 ZFAND5 IL12A RP11-111M22.2 FAIM2 CKB ZBTB20 APP ATP6V1F APLP2 HSP90AA1 ACTG1 D4S234E MTUS1 YWHAH AP1S2 ATP1B2 PSMC5 GRIK1 SYNPR CALM1 SLC1A2 RASGRF2 NDFIP1 NSF NECAB1 PJA2 RAB2A SLC38A1 THSD7A MORF4L1 CALM3 FTL CLSTN2 ITM2C TSC22D1 GABARAPL2 PCDHGA5 MT-CYB MAP2K4 UQCRC2 PTPRT CADM3 RTN1 SLC24A2 CRH RAB3IP ATP9A YWHAG TUBB2A OPCML NBL1 KLC1 HAPLN1 KIF1A RGS12 B3GALT2 PSAP IDS RP11-20I23.1 ATP6V0C TCEAL7 BSN QKI RTN4 CAP2 CRTAC1 FXYD6 RP11-154D6.2 PGD C18ORF32 LANCL1 MAPK1 NDUFAB1 ELAVL2 SKP1 GSK3A PPP3CA RASGRF1 RAB6A UBE2QL1 PITHD1 TMOD2 CDK5R1 BSCL2 TSPAN7 PCBP1 PDGFRA UBE2N ATP6V1B2 ENO2 GLO1 ASAP1 RPL32 SALL1 CLIP3 NRIP3 CD99L2 OCIAD1 LMO2 TRAPPC1 HSP90AB1 TMEM65 NDRG4 FBXL15 ADAM23 CITED2 ATRN KCNAB1 DNAJC6 MDH1 DNAJC5 ERH SLC25A4 CHL1 UQCR10 ARL8B BIRC5 HS6ST2 EIF4A2 CDK14 NGFRAP1 EPHA6 C16ORF13 RAB5C SPOCK2 NDUFB7 DPYSL2 ATP6V0D1 COX7C GPR158 BEX5 ALDOC CHN1 CLSTN1 ITM2B SLC7A2 DNAJA1 NRSN2 MTRNR2L8 YAF2 TCEB2 CNTN1 CCDC85B VSTM2L MYL12B MB21D2 PI4KA ARL6IP5 NCALD SCD5 HCN1 SCN3B DPP6 RPS6 ATP5E GRINA ACTR1A APBB1 PTMA HMGCR SLC8A2 PROX1 TPI1 TTN CX3CL1 RAB6B PREX2 FRMD4B GRIN1 KCNIP1 COPS7A MBP RRS1 MARCKSL1 SLC12A5 LAMTOR5 KIFAP3 EIF4G2 AES SERPINI1 ARF3 RHEB MT1X S100A6 SPCS2 ARF5 POLR2I BASP1 CDS1 ANK1 HSD17B14 MANBAL BEX4 GOT1 DCC TERF2IP STMN4 LAMP5 CAMK2G UBA1 SLC6A17 ARHGAP35 ALK HMP19 CALM2 PSMC3 UBE2V2 MAGED1 NTNG1 CMPK1 CNTNAP5 WDR47 PTPRM RPL7 PLCXD3 VPS35 GPM6A PCP4L1 THY1 RPL13 CBX6 GPR98 SRP14 UHMK1 SDCBP PRKCB ELMO1 ZNF385A RPL31 NXPH1 CAMKK2 BAG4 RPS27A HIGD1A SEZ6L ACLY PLD3 ADARB2 SNN ETV1 PRDX1 CSDE1 PPP2R1A PEG10 MZT1 KIF21A PPP2R2C ARL8A SNAP91 PDP1 PFN2 ATP6V1A GABARAPL1 ATP5H GMFB ARPP19 ZNF536 SYT11 CYP2R1 SYT4 BCAP31 VDAC2 DDR2 PRKAR1A VAT1L RPL23A MRPL11 STXBP1 PREPL ACTR10 DYNLRB1 LOX CNR1 GUCY1B3 KCNV1 CHRDL1 MTCH1 RPL26 CDK17 OPA1 GTF2H2C_2 LIN7B ETFB ATP6V1G2 PCDHA4 PCDHA10 PCDHA9 PCDHAC1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 RAB3B SLC6A1 MT-ATP6 MTRNR2L1 HSP90AA1 ATP1B1 DNER SNAP25 RPL41 MT-CO3 RTN4 GAD2 KIT ARL4C TSC22D1 BCL11B PREPL CCK MT-ND2 MORF4L2 SCN1A ANXA7 STXBP1 MDH1 B3GALT2 RAB3IP FXYD6 MTATP6P1 MT-CO1 HINT1 OAZ1 RPL26 TSPYL1 PID1 CLIP3 ITM2B RPL37A MTRNR2L6 USMG5 RTN3 CXCL14 MTRNR2L12 MPPED1 PPTC7 CRYAB SLC38A1 MT-ND3 DIRAS2 RTN1 ATP1A1 NFIA AC073264.6 GRIN3A NUDT4 KLHL5 BEND5 FGF12 FBXO2 RASGRF2 FBXW11 RHOA CAP2 SAP18 MT-CO2 TUBA1B MT-ND4 CA2 CNTN1 MAP2K4 PTPRT RP11-632C17__A.1 RELN SYT4 ACOT7 KIF3C COX6C CLIC4 MSMO1 SERINC3 YWHAB TGOLN2 APP RAP1GDS1 KIF1A LANCL1 EFHD2 AES RPS15 PRKAR1A GMFB FSTL5 ELAVL4 MYL12B GYG1 BEX1 ATP6AP2 OCIAD1 SPOCK3 CPLX3 GABRA1 LDHB EYA4 TPT1 FAM131C HSPA8 ATP6V1C1 RBX1 TMEM130 PTGES3 ATP1A3 APLP2 SELT NAA38 NPTN ZNF536 RP11-111M22.2 SQLE RLIM SYT11 ACTB PRKACB EIF1 C11ORF31 SSBP3 ATP1B2 EXTL2 WBP2 CDH13 LAMP5 KIFAP3 CALM2 PMEPA1 EIF1B CYC1 PLCB1 SNAP91 TSPAN7 PDP1 RPS4X KCNIP1 MT-ND1 TUBA1A SULT4A1 ARHGAP35 DOCK10 RPH3A RFK MT-CYB HMP19 DCLK1 FAIM2 GHITM RPS26 LUZP2 SYNJ1 GOLIM4 KCNAB1 RPL35 GRIK1 PNMA2 ARL8B PRUNE2 MT3 COX4I1 RPS10 CDKN2D GLIPR1 NDUFA5 RHOB RPL15 VPS35 KCNC2 NARS NACC2 PRNP DNM3 AP1S2 CADM2 VSNL1 EPHB6 QDPR ATP6V1G2 HAPLN4 CFH MORF4L1 NDUFB8 PGK1 HNRNPA1P40 RPL36A PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L12 MT-ND1 MTRNR2L1 MT-CO2 KIT MT-ND2 MT-CO3 PRNP MT-CYB SYT1 SPOCK2 TM2D3 GPM6A DNER SNAP25 CADM2 GAD2 MT-ND4 RAB3B MTRNR2L6 OXR1 CST3 PSMD12 PROX1 OSGEPL1 DNM3 PJA2 MAF FIBIN SPTBN1 STMN2 GHITM YWHAG DPYSL2 PITPNA SMIM13 SYT11 GOLIM4 CLIC4 MTRNR2L8 USP5 HTRA1 ARL8B CPE OR6D1P AP3S1 RTN1 PKM MAPK1 AES MT-ND5 HSP90AA1 PAFAH1B2 ARF3 CLSTN1 VAMP1 C14ORF2 HMGCR HINT1 WASL BAD NPTXR GADD45GIP1 MT-ND3 EPDR1 CHL1 TMEM59L REEP2 CPLX3 AP1S2 TSPYL1 CEND1 DISC1 SYN2 SYNJ1 OPA1 SNX3 SDCBP LZTS1 PGRMC1 NFIA FXYD6 SEZ6 RGS12 CALM2 MFGE8 BASP1 ELAVL2 STXBP1 CFL1 TIMP3 MT-CO1 CHMP5 NEGR1 RAB3IP DPP6 PLCB1 PTPRT TCEB2 GPR158 SLC6A1 EIF1AX ATP6AP1 RAN TMEM130 CORO2B PPP2CB SCN1B RAB3C SLC38A1 MT-ATP6 ATP5F1 INSIG1 PEBP1 TMOD2 TOX2 GRIK1 PMEPA1 CALM3 RPS6 TPGS2 THSD7A KIF21A SGCD ACTB PRIM1 NUDT4 BIRC5 ATP6V0C IDS RP11-20I23.1 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "SV2C-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-CO3 MT-ND4 MT-ND2 SYT1 MT-ATP6 MT-ND3 ARL6IP1 PRNP MTRNR2L12 PTPRS SPOCK3 GPM6A HMP19 FXYD6 SERPINI1 NDFIP1 ERBB4 EIF1AX SNAP25 RELN SEZ6L COL5A2 SLC6A1 RHBDD2 SYNPR MTRNR2L8 REPS2 OXR1 ACTG1 VSNL1 SCN3B MORF4L1 ROBO2 CALB1 FAT3 DYNLL2 NAP1L3 BIRC5 ITM2B BSG ARL1 RHOB ATP2B2 CALM1 PTGES3 MT-CYB ETS2 SLC9A6 SCG2 TSPYL1 SERINC1 COX6B1 ATP2B4 PTPRN2 DPP6 GABRA1 LPPR4 STXBP1 BASP1 DKK3 PSD3 ITFG1 PAM PITHD1 TMEM59L ATP1B2 SYTL2 RAB3B ARFGAP2 MIR6723 SCOC PCDHA4 CALM3 MT-ND1 EPS15 NCOA4 VAPB SLC39A10 MDH2 ATP5J CLSTN1 NCAM2 STMN2 RPL15 CKB PTPRT NIPA1 CACNA2D2 EXTL2 NAPB CLPTM1 MAP1LC3A MT-ND5 UBE2QL1 SERPINE2 PDE1A ZFAND5 CNTN6 LINC00116 UBQLN2 KCNAB1 CDKN2D COPG1 CDS1 RGS12 CDH22 CXXC4 PRKACB FSCN1 SCD5 PJA2 COX7C PPP3CA ATP1A3 HIF3A SOD1 CFH SYN2 KLHL12 PARM1 UCHL1 TMSB4X YWHAB TBCA VDAC3 ALCAM RPS19BP1 SMYD2 ATP1A1 UBC TNNT1 STMN3 TP53I11 RASGRF1 RAB11A MTRNR2L1 ERMN DNM3 ATP9A ATP6V1E1 NDRG4 SKP1 OVCH1 MMD GNB1 CNTN1 MAPK1 GTF2B SPHKAP MED31 ARL8A MGST3 DPYSL2 MAP1LC3B KIF5A TERF2IP KIT DNAJB6 PNMAL1 PRKAR1A DNAJC6 WBSCR17 FAM19A2 SPOCK1 SRP9 GAD1 FTL PPIA NPAS3 SPRTN OAZ1 RP11-111M22.2 SPOCK2 RP11-133L19.3 PRDX3 IDS DYNLL1 ARPP19 ENO2 APLP2 STMN1 TMEM151A MSMO1 CHRM2 LMBRD2 CAMK2G PGM2L1 SDCBP CDK17 PCDH8 GPCPD1 ATP1B1 ATP6AP1 COA4 EID1 TPGS2 MARCKS PRPS1 TALDO1 NXPH1 NCEH1 APP RTN4 OLFM1 PSMC5 OAT NGFRAP1 EPS8 MTCH1 UQCR10 PHYHIP CAPZB LUZP2 SLC25A11 NAP1L2 DIRAS2 PPM1A ZNF365 PPP1CB ATP2A2 NAT8L SUSD4 DCTN1 MAP1B GADD45GIP1 CA11 ACTB RASSF8 AK5 FKBP4 FNDC4 SLC38A1 RTN3 GOLT1A CCDC124 PCDH17 CADM2 FTH1 ATP6V1G2 TMEM191A GTF2H2C_2 PTCHD4 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 MT-CO3 ZNF385D SYT1 MT-CO2 THSD7A MT-ATP6 MT-ND4 MT-ND2 TBC1D15 MTRNR2L6 SNAP25 MT-CYB SLC22A17 PRNP ATP1B1 MT-ND1 GAD1 CPE PROX1 NDFIP1 YWHAH ALCAM RTN4 GRIN2A CADM2 MT-ND3 PTCHD4 RTN3 CREG2 RPL13A FGF12 DKK3 FAT3 CLSTN1 PEBP1 EIF1B NDRG4 SLC6A1 AK5 TPI1 TMEM130 ARL6IP1 ERBB4 PNMA1 ENOPH1 APLP2 NPR3 SERINC3 GDI1 PPP2R1A BASP1 BSG PTPRN SEZ6L2 MT-ND4L RP11-111M22.2 TOMM20 GABRA1 IDS TMOD2 COX4I1 TMA7 PREPL ATP5A1 S100A6 NUDT21 PSAP ATP1B2 NGFRAP1 SLC39A10 SDHAF1 PDCD5 PCDHA10 NR2F2 NEFH ARL4C DPYSL2 AP1S2 NAP1L2 PKM SYN1 OPCML KIAA1211 SPOCK3 PJA2 PAQR9 CLU MRPL52 ADAMTS5 KCNK1 FTH1 YWHAQ AURKAIP1 MAF OR6D1P TAGLN3 PNMA2 ZNF425 EDIL3 PTGDS TSC22D1 GPM6A SPRN FKBP4 PPTC7 WASL C12ORF57 GABARAPL1 GRINA CYC1 QKI COL9A1 STMN2 SCD5 SEPW1 RAB1A PNMAL1 CRYAB NAPB DYNC1I1 CD99L2 CHCHD2 RAP2A TSPYL1 TMSB10 AP2S1 SLC7A5 SCAMP5 SERINC1 TERF2IP TMSB4X ATP6V1G1 TRIM37 CERS6 PRUNE2 KLC1 ARL6IP5 MAP1B TMEM14A ITFG1 BEX4 APP CALM3 ATP2A2 NFE2L1 COX8A NPAS3 KCNC3 RPS15 TEX2 TIMP2 NARS SPTBN1 WBP11 HSP90AB1 SNAP91 MLF2 CX3CL1 RGS12 AZIN1 SFRP1 UBB DNAJB6 ENO2 SCG2 HDDC2 INPP5F PDE1C UQCR10 SPOCK1 NXPH3 VAMP2 NIPA1 EIF1AX PAM YWHAB GHITM RRAGA GPR158 MAP1A DLD NEGR1 ANK1 MAP1LC3B CBX6 GNG3 MIEN1 PARM1 GDA NEFM SPCS2 PCDHB18 CNR1 KIF5A RPL23A C18ORF42 PLCB1 CYCS RAB2A PCDHA9 DGKG ATP6AP2 STMN1P1 MTATP6P1 UBA52 COX14 DYNLT3 OXR1 LRP1B RPL32 VAMP1 COX7C MAPRE3 ATP6V0B NCALD PRDX2 CSDE1 PGM2L1 TBCA EDN1 ITM2B WFS1 RANBP1 CAP2 MAP2K4 SLC12A5 IGFBP5 EPDR1 RAB7A HSPA4 BCAT1 TXN GNAQ COL11A1 KIFAP3 RFK RSL24D1 SERF2 ALDOA RNASEK-C17ORF49 ATP6V1G2 RPS28 RPL21 AC244489.1 PLEKHD1 NR1I3 HNRNPA1P40 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ATP6 MT-CO3 MT-ND4 MT-ND1 MT-CYB MTRNR2L12 MT-CO1 MT-ND2 SYT1 RAB3B HSP90AA1 APP GRIN2A MAP1B HSP90AB1 STMN3 NAT8L SYNPR CADM2 MTND1P23 PSMC1 SV2B PAK1 RPS27A KIF1A C18ORF32 TUBB4B ADARB2 DCC ST8SIA2 RAB4A ARL6IP1 NAP1L3 EIF1AX ACTR6 FKBP8 UBA52 PPIA SNAP91 ARF1 NPAS3 CHL1 PEBP1 POLR2M ANK1 GAPDH SYT17 YWHAG TUBA1A VAMP2 TMEM200C UBC RPL10A HNRNPA1P40 RPL37A SPOCK1 SNRPN CLTC ZCCHC12 TEFM NCAM2 FAM219A ROBO2 IDS SKP1 ADAMTSL1 ELAVL2 SCN1A STXBP1 SCAMP5 PNKD RPS28 SEZ6 CALM2 PARM1 NRIP3 NDUFA4L2 TCEB1 DNER ATP9A DPF3 COX7A2 NACC2 PTPRN2 TSPAN7 SLC38A1 ADAM33 NDFIP2 PRNP CRKL RNF208 C14ORF132 MT-ND5 CAMK2G RGS5 SLC7A5 SLC6A1 LINC00087 C3ORF80 TKT KCTD12 CLSTN1 TMEM130 EDF1 SEZ6L ATP5H CALM1 PFDN4 GAD1 UQCRB RASGRF1 PLD5 FTH1 TSPYL1 KCNK1 QDPR PHYHIPL MT-ND3 GABRA1 GUCY2D CNTNAP3 B3GALT2 CPE ATP6V0E2 RAB3C PPP2CB RPL8 ISCU IGFBP5 EPS8 INPP5F PTPRZ1 DNM3 SARAF MPP1 FIBP NARS NECAB1 ATP6V1A CITED2 B2M MCHR2 RPL17-C18ORF32 RPL17 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 ELAVL2 MTRNR2L1 MTRNR2L12 MTRNR2L8 HSP90AB1 CXCL14 PRNP CNR1 SYT1 SYNPR ADAM33 CYFIP2 DPYSL2 VDAC3 CALM1 EIF1B MAP1B OXR1 MT-CYB PRKACB ARL4C ITM2B DNAJB6 QKI CDH7 MTRNR2L6 RTN3 MT-ND2 SDCBP SNAP25 RAB3C ATP6V0E2 SLC6A17 RNF11 SUSD4 PTMA COQ10B CALM2 NAP1L3 YWHAZ ARL2BP SNAP91 GPRC5B FIS1 CNTN1 YWHAG SSBP3 CHL1 DOCK10 MT-ND4 DKK3 ERBB4 RPL35 CLEC2L ZFAND5 SLC25A5 NBL1 TCEB2 SPOCK1 CLU TPT1 ROBO2 RNF17 KLHL12 UQCRB AP2B1 ADSS BCAT1 PLCB1 TOX3 MKX GUCY1A3 PPP2CA ATP1B1 SCN2B RP11-111M22.2 TENM1 VSTM2A FTH1 MAP4 ATPAF1 RASGRF1 LYNX1 NDUFB5 MT-ND1 STMN4 TSPYL1 SLC12A5 WBSCR17 DNER TSC22D1 FABP5 OAT RGS12 GPM6A BRK1 ASAP1 NDFIP1 PSAP ZBTB20 MAPRE3 MT-ATP6 DCTN1 SEMA3C DSTN NAP1L2 MRPL33 RPL39 BTBD11 SCAMP5 ISG15 ATP2A2 NCAM2 BAG4 PRKCB AKAP12 MT-CO2 ABHD14A REPS2 NUAK1 COX4I1 IGF1 TGOLN2 UQCR11 LPPR4 RPL13A NDN EBAG9P1 CCK IQSEC1 NPAS3 STX1A RPL37A NEK7 WBP2 ETFB VEGFA GAD2 SNRPN ARHGAP42 UBA52 NECAB1 CADM2 OCIAD1 RAB3B ZNF385D SYTL2 TBC1D15 DNAJC21 GABARAP IDS HNRNPA1P40 PLEKHD1 BIRC5 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MTRNR2L12 RAB3B MAP1B CCK MT-ND4 PROX1 MT-CO2 CALM1 VIP MT-CO3 GAD1 HSP90AB1 RPS12 MT-CYB SNAP25 TBC1D15 PGM2L1 DCLK1 SPOCK2 CNTN1 COX5B CADM3 TAC3 HSP90AA1 OLFM1 ROBO2 PRKACB SLC6A1 MT-ND3 FAM174A CNTNAP3 CALM2 AURKAIP1 RPL15 ARL4C STMN1 RTN4 SLC17A7 GNAQ DIRAS3 FXYD6 CLTC SCAMP5 ATP6V1F EPHA6 YWHAZ SYT17 GAD2 PNMAL1 TSPYL4 TUBA1B ARF1 AP2B1 CDH8 DNER DNAJC5 VCAN PPP3R1 HSPE1 BASP1 FAM149A PDP1 CORO2B AP1S2 MT-ND4L LANCL1 CERS6 DKK3 MT-ATP6 ATP6V0E2 EIF4A2 PREPL DLX1 MORF4L1 CHRNA2 SYNPR ATRN GRIN1 GPM6A RPL13 ST8SIA2 FGF12 UCHL1 TENM3 TCEA2 YAF2 ATP1B1 SLC24A2 PSMB7 MTCH1 OAZ1 EPAS1 ATP5H CACNA2D2 RPL11 TUBA1A FIGN MTRNR2L1 ARL2BP SMOC1 FBXL16 RLIM KCTD12 ADAMTS6 SH3BGRL3 ANKRD18A CAMK2N2 MAP4 RPL38 SERINC3 TPT1 CNR1 HPRT1 GHITM RPL37A NDRG4 HS6ST2 WBP11 SYT1 KCNK2 ACOT7 ATP5B KIF5A CHGB PRNP NDUFS5 CYFIP2 NDUFA12 RAB5C D4S234E RAB3A ETV1 SKP1 RPS4X ASIC4 IGF1 PCP4 TOMM20 SCN1A TIMP2 C14ORF132 NUAK1 ARF5 ZBTB18 MAPK1 ATP1A3 NPAS3 RP11-195F19.5 NUDT21 GLUL WSB2 COL12A1 SEMA3B GNB1 PGD MT-ND1 CD63 CAB39 FTH1 MYL6B CMAS WNT4 SNRNP25 HMP19 NAP1L2 WFS1 MT-ND5 GDI1 CACNB1 SYNPO PEBP1 CHP1 MAF GABRA1 CLU SLC7A8 PTK2B DOCK10 PPP3CA ASAP2 RTN3 FAIM2 ARL6IP1 BIRC5 ATP5J VSTM2A TMEM59L LRP2 GDA RHOB ZBTB39 YIPF3 YJEFN3 NAPB SPARCL1 SCN3B CDK5R1 PGRMC1 KLC1 ERBB4 PLCB1 IDS RPS28 BSCL2 ALDOA NDUFA13 RPS15 HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L12 MTRNR2L1 MT-CO2 ATP1B1 ZNF385D MT-CO3 SNAP25 MTRNR2L8 MT-ATP6 MT-ND4 PREPL ERBB4 HMP19 ATP2B2 CADM2 ARL4C MT-ND2 SYNGR3 PLCB1 RTN3 RTN4 LRP1B GAD1 SCG2 NCAM2 ALCAM RPL17 KCNC2 APP THSD7A MAP1B CPE MT-ND1 DPYSL2 RPL13A SYNPR SEZ6L MTRNR2L6 STMN3 CEND1 TMSB4X RPL41 INPP5F NFIA ADAMTS6 TMEM59L LYNX1 TIMP2 MAPK1 TNS1 SLC6A1 DNAJA1 PPP3CB TSPAN7 DPF3 ANKRD26P3 ITM2B CNTN1 PTMA NUAK1 RPS3A MT-ND4L ASIC4 RPS27A CALM1 CALN1 HS6ST3 PDE3A OXR1 SPTBN1 WBSCR17 PRUNE2 CCDC85B SPOCK1 NR2F2 SKP1 BCL6 TSPYL4 MT-ND5 MAP4 RTN1 NFE2L1 OR6D1P VWA5A PGK1 ATP6V0C DGKG FBLN1 MAPRE2 CNTNAP5 PPP2R4 MYOM1 ATP2A2 RPL38 CREG2 ATP1A1 NRGN ARL6IP5 IGF1 GOT1 NEGR1 AP1S1 CRIM1 RHBDD2 NRIP3 DPY30 NDFIP1 MT-ND3 UBQLN2 PRKACB PITHD1 NRCAM SDCBP B3GNT1 C14ORF2 PPP2R2C PARM1 AK5 CTBP1 CD99L2 ATP6V1A GSTP1 NDUFB11 SH3GL2 C11ORF31 PPP2CB MRAS NAT8L SAP18 PPP2R2B RNF208 DNER CDK5R1 DSTN CALM2 DOCK10 GRIN1 CSDE1 BEX4 PAM SCN2B PAX7 STMN2 YWHAH SMAP2 EIF4A2 SLC35B1 SHISA6 HSP90AA1 HRH3 SLC12A5 LRRC69 PTPRZ1 H2AFZ COL11A1 BTBD11 ELAVL4 SYNJ1 ATP6V1E1 CERS6 RGS12 TEX2 NDUFB10 GDE1 FAM134A NDUFA1 PACSIN1 FBXL16 DHCR24 BCAT1 NPAS3 OLFM1 TP53I11 AP2M1 MRPL20 OCIAD1 KITLG UBL5 IGSF21 PCP4 TMEM100 HSPB3 PRELID1 MAF MT-CYB GABRA1 DNAJC5 CDH13 PREX2 NDUFB8 SRM SNAP91 PSMD8 ABHD8 PGD HCN1 CAMKK2 RP11-111M22.2 FXYD6 HMGCR CFL2 KIF1A C18ORF32 ANK1 ALDOC MORF4L2 SRP14 IFI6 TRIM37 KCNMB4 SCN1A PKM TENM3 LMBR1 APLP2 GRIN2A GNAQ TMX4 RPL32 BRK1 CADM3 SYTL5 CYCS PFDN4 FIGN HTRA1 DIRAS1 CAMK2D BTBD10 ATP5B SNX3 TPRG1L PPARGC1A PNMAL2 TKT RPS28 RBX1 PSMC3 CLSTN1 CCK ARL8B PCMT1 TNNT2 DCLK1 SLC22A17 CPLX2 PRPS1 PIN1 GPATCH4 RPL31 HSP90AB1 SYT5 B3GALT2 CNR1 TMEM160 NCALD MAGED1 EBF4 CDH8 CIAPIN1 C6ORF1 NHP2L1 BSG COL21A1 RAB3IP ARL8A RP11-20I23.1 PNMA2 ALDH5A1 FHAD1 TMSB10 CNTNAP3 GADD45GIP1 UQCR11 ATP6V1G1 SPOCK2 ATP6V1C1 ETV5 RAD23B VGF RAB2A PHYHIPL SNCA STMN1 SH3RF1 CABYR ATP5J2 PRKCE NRAS RPL7 NR1I3 CAPZA2 IDS RNASEK-C17ORF49 HNRNPA1P40 RAB3B SYTL2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 RAB3B FAIM2 ITM2C HNRNPA1P40 SERINC1 SLC6A1 YWHAG RPL37A CCK CLU SLC22A17 RPS15 RTN4 VIP ATP1A3 ATP6V0B ITM2B DLX1 EFCC1 TBC1D15 DNAJC21 KIF21A PSMD12 GPM6A SSBP3 RPL38 BSN PVRL1 PPIA PNMA2 PIN1 KIFAP3 ZCCHC12 MT-CO2 STMN1 MRPL55 CADM3 SELM CNTN1 MAPRE2 ATP5J UHMK1 ATPAF1 RPL10A PCDHB10 MT-CYB CXCL14 BEX5 ATP5I LMCD1 WSCD1 ATP6V0E2 MAP2K1 LMBRD2 SKP1 MZT1 GABARAPL1 SNCA PCDH18 DNAJB9 ALCAM CTGF UCHL1 ACTB CD24 UQCRC1 ATOX1 PROX1 SNAP25 PSAP CST3 UBE2F ARHGDIA APP WBP11 NCAM2 PAFAH1B2 SCOC CHCHD2 CTBP1 RPL13 NDUFA13 APLP1 EPHB6 MAP1B GAPDH MAP1LC3A GLRA2 POLR2I YJEFN3 INPP5F SCD5 DNER TOPORS-AS1 SARAF DPYSL2 HTR2C PPTC7 RHBDD2 NR2F2 RPL15 GNAQ RPS10 KIAA1024 PNMAL1 IPCEF1 PTPRS IDS CALM3 NDUFB8 MLF2 TMSB4X STUB1 PKM CTXN1 ALDOC BIRC5 STX1A PTPRN AES DNAJC4 FAM134A COX5B BSCL2 RP11-20I23.1 ATP6V0C\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN1 MT-CO1 DNAJC21 RAB3B DCLK1 MT-CO3 SYNPR RPL13A ERBB4 GPM6A RPL41 MT-CYB MT-ND4 FXYD6 NDFIP1 RPL21 SYT1 MT-CO2 SNAP25 RPL17 PRKACB RPL38 TPT1 RPL12 NCDN RPL26 STXBP1 HSP90AA1 CALM2 RPS28 PEG10 VIP RPL39 MYL6 TAC3 RPL23A CALM1 FKBP8 MDH1 SYT11 RPL32 TAGLN3 CABP1 SLC25A5 PLD3 RPL31 MTRNR2L12 FTH1 RTN3 ITM2B RPL37A PNMA2 NDRG3 RPL3 NPTXR MT-ND1 CNR1 TUBA1A SARAF SCG2 RPL35 ATP6V0B RNF11 HMP19 RPS3A SERINC1 DYNLL1 NDUFA13 NELL2 CYFIP2 PCP4 ACAT2 SLC38A1 SLC24A2 CPE EPS15 PEBP1 PRUNE2 AP2S1 MTRNR2L8 ATP2B2 FTL GPR68 PIK3R1 TUBB2B TSPAN7 DNM3 MAP1B TOMM20 TRHDE CAB39 SPOCK2 RPL18A PPP2CA PSAP CHRNA2 SLC22A17 TCEAL2 CFL1 CDC37 BTBD11 TPI1 HSPA8 CTD-2026G6.3 MAPK1 ATP1B1 CCK GAPDH BAD UBB ACTB CTNNB1 RNF181 ACTG1 NCALD HK1 NCEH1 NDUFS6 BASP1 EIF4A2 CHL1 GABRA1 UBE2V2 RPS27A ZFAND5 RPS26 ARPP19 GPX1 ATP6V0E2 GDI1 OCIAD1 CAP2 NEGR1 ARL6IP1 CISD1 NDUFS5 TPRG1L UBA52 NDUFB8 PET100 NPTX1 NARS LDHB CYCS CKB SSBP3 COX6C APP THOC7 UBE2QL1 TUBA1B THY1 TSPYL1 SCAMP5 RP11-111M22.2 HTRA1 MAP4 HMGCS1 TMSB4X MGST3 MTRNR2L1 SNX3 PTPRS SPOCK3 GAD1 YWHAB CADM2 CLU COX7C ALDH5A1 ARL6IP5 INSIG1 RPS12 IDS ARFGAP2 PRDX2 ETS1 FXYD7 SLC9A6 TMA7 RABAC1 RLIM SUSD4 ATP6V1A STK39 WASF1 PEA15 COX6A1 USMG5 PPP1R9B COA3 TPPP PIP5K1B GUCY1A3 SPARCL1 NDUFA12 SLC17A7 PVRL1 PLS3 TUBB2A RPS15 AK5 VAMP2 CLTC ATP6AP1 C12ORF49 NUAK1 RAB2A RAB3IP LPPR4 RGS12 IMMP1L STX1B CLSTN1 ARC RPS5 PSMA7 RTN4 TOMM7 ATXN10 INPP5F EIF4G2 TOMM70A PNMA1 SERINC3 PRKAR1A DDR2 SHISA8 INA RAD23B ELAVL4 MARCKSL1 EXTL2 MAP2K2 WBP2 TMX4 ATP6V1F MZT2B COX7A2 CADM3 KLC1 DLX1 MMD ANXA7 MYBPHL TENM3 ATP5A1 APBB1 TMEM144 TMEM59L PHYHIP COX7A2L ADSS TOLLIP MRFAP1 PRPS1 ROBO2 PAFAH1B2 CNTNAP5 SNX17 UBE2N WBP11 RPL11 VSNL1 CD63 CNRIP1 GPX4 MAP7D1 RAB1A RHOB KIF21A SPOCK1 ACTR10 MARCKS GDA MAPRE3 RASGRF1 NGFRAP1 NAP1L2 WARS ATP9A TIMP2 TMOD2 MRPL51 KCNAB3 YWHAZ SUCLA2 ATP5G1 RPL7 SLC31A2 THSD7A LYPD1 WSB2 TERF2IP LANCL1 GUCY1B3 ATP6V1E1 LMO4 MLLT11 SMS BSG AURKAIP1 ABHD14A NWD2 POLR2K VPS35 NAP1L3 DSTN PFDN1 NDRG2 RAB3A NAPA CAMK2G RAB3C DUSP6 SYNGR3 DHCR24 MAP1LC3A CDS1 GRIN1 UQCRB CD99L2 MT-ND2 NDUFA8 ATP1B2 KIF3C PLD5 RAB6A NDUFA2 MRPL52 PPP1CB PGD REEP2 SCOC UBA1 NFIA RPL6 PCYT2 OLFM1 GUK1 ATP1A3 NDUFC1 SNX10 SYT5 PTPRN2 DYNLRB1 MYEOV2 ATP5I FAIM2 EPB41L3 ENC1 ZBTB18 RPL10A PARM1 SELM MAGEH1 SDCBP PREX2 C12ORF57 SNCA FAM3C TMSB10 RPP40 CXCL14 VDAC1 GNG5 CLIP2 ZNF385A SLC12A5 RGS4 PSMC5 MAP2K1 ECM1 IRS4 SUMO1 PRNP VDAC3 WBSCR17 PITHD1 NOP10 MYL6B KRAS SYNJ1 COX4I1 CNTN1 HFM1 STMN1 PPIA PTGER3 PHKG1 NDFIP2 UQCRFS1 BNIP3 OLFM2 NRGN MRPL55 YBEY UCHL1 KCNK1 DMTN C19ORF70 MYOM2 NR2F2 ATP6V0D1 TMEM35 TPD52 RPL13 AP1S1 KCNAB2 GLIPR1 CSDE1 SNCB NDUFB4 TRMT112 RAN SKP1 PJA2 SRR OPCML SLC2A1 PGAM1 PFKP DACH1 ALDH1A1 PPP2R1A VAPB SPTBN1 TUBB4B ATP5B ALDOC ADAM33 DKK3 MSMO1 PGRMC1 SUMO2 MT-ND5 PROX1 PELI3 FARSA PPP2R2B PCDHA9 WI2-1896O14.1 GHITM MAST3 ATP5E PGM2L1 ATP1A1 ARF1 SEMA4G POLR2J ATP6AP2 PLCB1 NAA38 KLHDC3 IDI1 B3GNT1 REEP5 CLSTN2 NDUFA1 LGI3 SYNGR1 UBC NELL1 CEND1 RPL15 CAPZA2 KIF1A NECAB1 PDE1A KIF5A KCNMB4 CDC42SE2 ARHGDIG CHCHD2 RRM2B CHGB PCDH8 RHBDD2 ALDOA HSPE1 NSF HNRNPA1P40 RPL36A TUBB AC244489.1 TBC1D15 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 DCLK1 TMSB4X GRIN1 PIK3R1 TAC3 THSD7A CALM1 RTN3 FAIM2 VIP PREPL ATP1B2 RPL41 RPL10A MT-CO2 NPAS3 ATP2B2 PCSK1N MTRNR2L12 PDE3A RGS12 OXR1 SPARCL1 RP11-219A15.1 MT-CO1 TUBB2B MAP1B PTHLH TBC1D15 RAB3B ZNF385D SYTL2 SEZ6L2 TENM3 APP RPL18A RPL37A PCDHB10 SOD1 SEZ6L HSP90AB1 SLC6A1 SYN1 MT-ND1 NDUFA13 PSAP KIAA1211 MT-ATP6 ATP5G2 MT-ND5 GABARAPL1 CADM2 NRCAM NPR3 PPP3CB RTN1 SLC1A2 CCK CAPZB HS3ST3A1 GGNBP1 SYNGR3 SALL1 ZBTB18 SULT4A1 SPOCK1 HSP90AA1 GAD1 MT-ND4 ETFB NBL1 RRM2B CHCHD2 ASIC4 UQCRH MRPL33 HINT1 SNCAIP CYP2R1 COX7A2L VSNL1 RAB3IP RNF11 CRIM1 ASAP1 NRIP3 ERBB4 SYT13 NFE2L1 VAT1L COL12A1 SPOCK2 EIF1AX SLC12A5 COX6C PIP5K1B AP1S2 FXYD6 ZNF365 PRKAR1B ATP1B1 ATP6V1A ENOPH1 SPOCK3 LAMA2 OLFM2 MT-ND2 RAB1A KIF1A MAP1LC3B FLOT2 TP53I11 TMA7 GABRA1 RPL8 C11ORF65 MZT2B SYT4 LGI3 UBE2QL1 ITM2C PCDH15 RHBDD2 ARF5 TSPAN7 NHP2L1 CALM2 TCEAL2 UBC EIF1 LANCL1 ADAM33 SCN3B SSBP3 OR6D1P BSCL2 MTRNR2L6 SNRPN DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CPLX2 MT-CO2 MTRNR2L1 SNAP25 SYT1 ATP1B1 VAMP2 SPOCK2 RTN1 EFR3A GAD1 MAP1B ACTB FSCN1 ROBO2 SERINC1 HSP90AB1 KIF1A PNMA2 RAB3B GPM6A ATP2B2 VIP CNTN1 CADM2 PREPL VCAN TSPAN7 FAIM2 EID1 INA MT-CO3 RGS12 MTRNR2L6 MTRNR2L12 CCDC115 MT-ATP6 RPL41 RAD23B CHCHD2 CCT5 EDIL3 RNF11 C14ORF132 CALM3 CBLN4 TUBA1B CLSTN1 BAALC NUTF2 PPP3CA SCAMP5 HK1 IGSF21 COPS8 UCHL1 PFKP MYL6 MARCKS ATRN SMOC1 DLX1 JAKMIP1 CEND1 SCOC ACTG1 THSD7A KCNIP1 SPOCK3 CDC42SE2 MAP4 PRKACB YJEFN3 NDUFA2 NDRG4 LDOC1L D4S234E EIF1AX NDUFB8 IGF1 TMEM130 BEX1 PDP1 PPIA MTRNR2L8 COX6B1 OLFM1 LDOC1 QKI RTN3 RAN NGRN SLC38A1 SARAF MORF4L1 CAPNS1 EIF1B CMPK1 TOMM20 PRKAR1A C1ORF52 REEP2 FSTL5 FGF12 RPL6 GHITM ACTR6 NAT8L NDUFB11 GABRA1 APLP2 SLC9A6 SH3BGRL3 STMN2 MLLT11 GRINA BASP1 ACTR10 PPP2R1A YWHAG CDK14 DMTN CDK5R2 SYNPR SLC24A2 RPL32 NTN4 MT-ND4 CAB39 SUB1 ASIC4 NTHL1 MAPRE3 NELL2 BCAT1 PFN2 ISOC1 RP11-111M22.2 YWHAZ CDK5R1 THYN1 HMP19 NDUFA11 UQCRH TMSB4X CMAS NDFIP2 COX4I1 CNR1 ENOPH1 SYNGR1 PTHLH EIF4A2 SCD5 ERBB4 AURKAIP1 APP PAK1 MAP1LC3B CD24 FTH1 TBCA PTMA RPL18A PGRMC1 CDH8 KIF21A ENC1 NCALD CCDC85B SLC22A17 CHL1 SMIM13 PPP3R1 GNG2 INPP5F MAFB SEZ6L2 ARL2BP ARL6IP1 TPT1 CD63 GRM8 ARL4C TENM3 YIPF3 NDFIP1 FXYD6 CHRDL1 CERS6 GDI1 CALM2 CLIP2 PRDX1 MRPL37 NUAK1 IDS RPL12 TCEB1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MTRNR2L12 MT-ND4 SYT1 RELN MT-ND1 CCK MTRNR2L8 CXCL14 MTRNR2L1 MT-ND3 MT-CYB MT-CO2 BIRC5 ZNF385D ITM2B GPM6A APLP2 MAP1B CNR1 MT-ATP6 RAB3IP DNER MTRNR2L6 MT-ND2 ATP6V1E1 SPOCK1 SCG2 AES MTATP6P1 GLUL SERPINI1 STX1B RPL13A MT-ND5 YWHAH EGFR APP RGS12 ATP1B2 ATP6V1A SYT4 PRPS1 RTN3 NXPH1 CALM1 ARL8B DLX1 MORF4L2 HNRNPA1P40 DNAJC5 RBX1 TSC22D1 SCAMP5 TOX2 NDRG4 QKI RPL32 DLD TMEM200C RTN1 PGRMC1 ADARB2 SMAP2 MTPN SYN1 CLU IMMP1L SGCD BEX1 CYB5R3 PI4KA DYNLL2 PPP2R2C YAE1D1 ARFGAP2 PEBP1 NDFIP1 CDH24 ALDH5A1 ATP5E DPP6 ARL6IP1 YWHAG CSDE1 CLIP2 MAPRE2 GRIN2A RPL31 YWHAZ RPL38 SLC12A5 TUBA1B EPB41L3 PDCD5 FAM219A PIP5K1B ATP2B2 MYL6 C16ORF13 CPE PLD5 BSN ITM2C ATP1B1 KITLG MAPK8IP2 RPL23A FKBP4 ERBB3 RASSF8 GABRA1 ACTB CHL1 GHITM GNB1 SLC1A2 EPHB1 GMFB BCL11B PPAPDC1A KIF1A RPL6 TUBD1 PPA1 APLP1 NCALD ATP6V0E2 DNM3 TGOLN2 OCIAD1 PLOD2 STK39 FSTL5 SCD5 NDUFA1 PHYHIPL CKB WDR47 GUCY1B3 SLC7A8 PSAP SNAPC5 UCHL1 CDK5 PHB SLC8A2 FAM134A TMX4 RREB1 SCN2B SLC25A4 DDR2 DKK3 SHISA8 MTX3 CADM3 ATP5I CPLX2 TCEB2 SLC9A6 TMSB4X BCAT1 PAFAH1B2 TUBB2A RPL13 SYT11 POLR2I GAPDH C12ORF57 PTPRZ1 NRIP3 RPS12 MT-ND4L TM2D3 RHEB TCEAL7 CUBN C6ORF1 CADM2 NDRG3 EIF1AX IGF1 DNAJC6 PRKAR1A FNDC4 ATP5C1 SYTL2 RAB3B RPL17 RPL17-C18ORF32 RPL21 ALDOA IDS TUBB AC244489.1 GTF2H2C_2 SNAP25\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 RAB3B ARL4C GPM6A MT-CYB ERBB4 RGS12 MT-ND2 MT-ATP6 SNAP25 MT-ND1 GUCY1B3 ATP6V1B2 CADM2 GRIN2A SYT1 MT-ND4 MAP1B ARL6IP1 ATP1B1 TTN NR1I3 RPL39 IDS DPYSL2 MAP1A KCTD12 SYNPR RTN1 APLP2 TPT1 GABRA1 STMN2 IGFBP5 TMEM130 LRP1B ELAVL2 ALDOC MTRNR2L1 NDUFA4 PRNP SHISA6 STK24 EFR3A GNB1 DKK3 ATP2B2 CHL1 MT-ND3 PRKACB PLD3 PNMAL1 SPOCK2 VDAC3 MTATP6P1 THSD7A RAB3C CCDC152 SLC6A1 RP11-219A15.1 LGI2 CD63 NPAS3 ARL2BP ALCAM CDKN2D NAP1L2 SEZ6 PROX1 HPCA CAMK2G C4ORF3 MFSD6 ACTB AES ASIC4 FXYD6 NELL2 GRIN3A TMSB10 HEPACAM NTN4 PREPL ATP6V0B ARFGAP2 SAMM50 CAPZA2 PPTC7 ARF1 CTNND2 PPP2R2C ATP5G1 GUCY1A3 DNM3 APP ARL6IP5 PFN2 SLC38A1 PSAP RAB2A NTNG2 SCN1A SCAMP5 COL12A1 EIF1B INPP5F PTGDS PIK3R1 ATP6V1C1 STX1B DSTN SCRT2 NRCAM VAPB CALM2 COX7A2L QKI UCHL1 GORASP2 RPL37A SCN5A MRFAP1 YDJC TOLLIP MAF CHRNA6 CAMK2N2 DCC CNTN1 ARL8A SYNJ1 RPL26 ATP2A2 BEND4 REEP2 YAF2 RPS4X RPS6 FAT3 RPL38 CCDC141 CDH8 PPP3CB MTCH1 RTN3 OLFM2 GPR98 HMGCS1 RAB1A RAB6A COBLL1 NUAK1 GDF10 HK1 KRAS ATP6AP2 GPCPD1 RPL35 CPE STMN3 MTRNR2L12 RAB11A ADAM33 STMN4 CDK5R1 PTK2B FGF12 HMP19 TCEA2 CEND1 FAM3C CA8 FGF2 HDLBP NDUFB5 CLU PLAUR ATP9A KIF7 ACTR10 NPTN TIMP2 SLC12A5 RAN KIF21A ITM2B MPP1 MAPRE2 ACOT4 UQCRH CALM1 NDUFB8 PAFAH1B2 RTN4 ATP6V0E2 TOMM7 SUB1 GABARAPL2 BIRC5 GPRC5B TSPAN7 MTRNR2L6 PRDX1 COX7C ADAM23 COL11A1 RPS28 COX4I1 THY1 ADSS TUBB3 PSMC1 PET100 NSF RPL36A TUBB AC244489.1 TBC1D15 DNAJC21 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC6A1 SLC22A17 DNAJC21 ZNF385D SNAP25 THSD7A CAMK2G CDK5R1 MT-CO3 SCN3B CXCL14 TRIM36 ATP1B1 HSP90AA1 CYFIP2 ITM2B PROX1 MAPK1 ELAVL2 TPRG1L MAPRE3 RPRM NMNAT2 KCNC2 FSTL5 SCD5 MRPL37 ATP9A SSTR2 ADAM23 MT-ND2 TPT1 GDI1 SYNPR MT-CO2 KLC1 SERINC1 STMN2 RP11-111M22.2 INPP5F NPAS3 RPL41 CPE APLP2 PTHLH RPL13 AP2B1 KIF5A RAB1A BCAT1 MYEOV2 FKBP1A POLR2K INA ISCA1 ARL6IP1 PNMA2 PARM1 RTN4 PRNP RAB3IP ZFAND5 VSNL1 GPM6A SCN7A RPL32 RORB OPCML CADM2 PDLIM5 RPL15 PPP3CA FAM127A PCDHA4 SCN1A TSPYL1 NCOA4 SLC38A1 BIRC5 GSK3A ZBTB20 HSP90AB1 CLSTN1 SYT4 HDDC2 CYCS HDAC1 OXR1 GRIN2A OLFM2 ARL8A MAST3 TMEM59L TM2D3 PTPRN2 EIF4A2 KCNAB3 ERBB4 C12ORF57 MT-CO1 MYL6B HTR2A FAT3 UBE2V2 ATP2B4 CHN1 HTR2C JUND MAP1B IDS LMO3 RPL6 NSF RPL13A HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MTRNR2L1 MT-CO3 TSHZ2 SYT4 IQSEC1 CADM2 WFS1 NAP1L3 MT-ATP6 MT-ND3 GAD1 MTRNR2L6 PARM1 SYT11 MAPK1 PPP3CA DKK3 PSAP UQCRH NDUFB3 MORF4L1 NCEH1 LMBR1 D4S234E VPS35 ENC1 SPRTN ATP1B1 MBP CRIM1 CCK GAPDH BIRC3 VWC2L MAP1B MTRNR2L12 LYPD1 ELAVL4 THSD7A CNTNAP5 CLU ARPP19 RAB11FIP5 RGS12 MT-ND5 CPLX2 SNAP91 CPE ASAP1 ATXN10 PFKP ATP6V0E2 SARAF RHOA ARHGAP35 RPS4X ROBO2 ATP2B2 HN1 GPR56 SCD5 MT-CO1 ACTR10 TUBB2B STMN2 PPP1CB ATP6V0B NHP2 GRIN2A HSP90AB1 PLCB1 C1ORF52 BIRC5 YWHAG PHYHIPL ATP5A1 PNMA2 ZFAND5 GPM6A TSPAN7 NFIA ACTB SLIT1 PDE3A PI4KA RNF11 SLC24A2 TIMP2 CDH13 SYT13 NBL1 VDAC2 TSPO APP ARL6IP5 IGFBP5 TP53I11 RPL38 AP2B1 NSF RAB3B ZNF385D ESCO2 SYTL2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L1 MT-ND4 MT-ATP6 ATP1A3 MT-CO3 RAB3B ATP1B1 SYTL2 MTRNR2L12 PEG10 MT-ND2 RPL35 PROX1 ASIC4 MT-ND3 PPP1CB GPM6A TIGD4 CREG2 CEND1 MT-CO2 MTRNR2L6 RP11-219A15.1 KIAA1211 HDLBP CXCL14 ITFG1 PARM1 PTMA SLC6A1 INHBA NDRG3 UBE2N TUBD1 ATP1A1 RGS16 HAPLN4 RGS12 SAP18 SPTBN1 PTN STMN2 FAT1 RPS28 APP PRKCE NPTXR ATRN MTATP6P1 SARAF ZBTB20 COX7C PRDX3 NXPH3 OLFM1 SOX2 ANKRD18A PPP3CA MAPK1 SLC12A5 PTHLH SCN2B AP2S1 HTRA1 B3GNT1 INA PPA1 PNMAL1 MAOB PPP2R1A SPOCK3 PLD3 TIMP2 COX6A1 HRH3 TCEAL2 KCNC2 MTRNR2L8 TMEM130 GRIN1 BASP1 FTH1 ATP5A1 GABRA1 EPHB1 PSMC5 YBEY EDIL3 PCDH17 ADARB2 ATP6V0E2 RHOB VWC2L TLN2 SLIT1 FXYD6 MT-ND4L STMND1 BSCL2 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VIP TSPAN7 SYT1 SCG2 SPOCK2 ATP1B1 RAB3B TMSB4X STXBP1 APP RTN4 RPL35 SERINC1 CLU FXYD6 NPTXR RPL41 TBC1D15 RTN1 PPP2CB SYNPR MORF4L2 KIF1A ERBB4 MT-ND4 HMP19 CTSD SEZ6L ELFN1 ADAMTSL1 NCAM2 PRKACB DLX1 MAP1LC3B TMA7 EFR3A ARL4C TXN RTN3 B3GNT1 VAMP2 REEP5 PLD3 EID1 CALM1 ARL6IP1 UCHL1 NGFRAP1 ENO2 STMN3 SYN2 BIRC5 CPLX2 PNMA2 SCAMP5 ZNF385D RP11-20I23.1 ATP6V0C ITM2B KCNC2 TUBD1 CHRDL1 SLC39A10 CSRP1 PRUNE2 VDAC2 MTCH1 ATP2A2 GABRA1 FIS1 CLIP3 TRHDE RRM2B RPL32 PTGES3 MAP1B APLP2 HTRA1 CBLN4 THSD7A EIF1AX ENC1 SYT17 MMD CADM3 PPP2R2B SYNPO DCLK1 SYT4 NHP2L1 SLC22A17 UQCR10 QKI ATP6V1C1 DIRAS1 ENOPH1 SLC38A1 RPL12 OPCML LGI3 MPP1 PGK1 TUBA4A DKK3 KIFAP3 PCDH8 PSMC5 SRP14 NACC2 C18ORF32 MFN2 PJA2 BEX2 FTH1 RPS6 HEATR4 PRNP EIF4A2 NPAS3 CALM2 SEMA5A EIF1 KLC1 TCEAL2 SEMA4G VSNL1 C9ORF16 VGF TIMP2 RABAC1 ATP1A1 TSPYL1 THY1 FIGN NAP1L3 YWHAH TOMM22 CDH13 MYL6B ADAM33 GUCY1B3 LIMK1 WDR47 DPYSL2 PGAM1 TBCB SNAPC5 PPP1CB RPL13 SKP1 FAM19A2 TMSB4XP4 MAP2K4 C2ORF80 BAD PROX1 WBSCR17 PCDH19 MT-CYB FBXW11 NPTX1 TCEAL7 MT-ATP6 SULT4A1 PPP2R2C SIRPA CNR1 PLCB1 NDUFAB1 FABP5 PPP3CB TUBB2B ATP6AP2 RPL26 PGM2L1 ENSA ANXA7 TOMM7 RPL13A ATP1B2 HIF3A SYT11 BSG SLC10A4 RPL38 COX4I1 PARM1 RAP2A OCIAD1 ESYT1 GDI1 MT-CO1 ATP5E SUB1 DIRAS3 ALDOC SEC61G COL11A1 NFIA PTPRN NAPB SLC6A17 EIF1B LANCL1 BCAT1 YWHAG FXYD7 PPP2CA AP2B1 TRMT112 RP11-111M22.2 CA10 UBQLN2 OR6D1P ROBO2 ATP5J PNMAL1 COL5A2 RAB6B ST18 RP11-195F19.5 RPL18A PAFAH1B2 ZNF536 WASF1 CRIM1 VPS35 CLTB HSP90AA1 ATP5G3 NDUFB2 OXR1 TF CFH RNASEK-C17ORF49 ALDOA AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MTRNR2L12 MT-CYB MT-ATP6 MT-ND3 MT-CO2 MTRNR2L8 MTRNR2L1 MT-CO1 MT-ND2 MT-ND1 PRNP RPL38 MTATP6P1 MT-ND5 GRIN2A PJA2 SV2C PEG10 HSP90AB1 DNER GAD1 DNAJC6 PREPL ZNF385D RAB3B RGS12 ATP6AP1 RELN HS3ST5 ARL6IP5 ITM2B GUCY1B3 CKB PCSK1N JUND YWHAB CALM3 KIF21A PCDHA4 PNMA2 CAP2 RPL13A SLC9A6 PSMD12 ATP2A2 SCAMP5 HS6ST3 NARS ARL6IP1 SPOCK1 ELAVL4 SNAP25 FSTL5 NDFIP1 SLC12A5 CERS6 MAP1B APLP1 ERBB4 RTN1 COL25A1 GPM6A MYL6 ROBO2 RPH3A SYT4 TBC1D15 IDS GAP43 SMS ANAPC13 DISC1 ZFAND5 COL5A2 RAB6A PGK1 PSMD8 SFRP1 GUCY1A3 ATP2B4 SERPINF1 NPTN PIK3R1 ARHGDIG NR2F2 HSP90AA1 RASSF8 ALDH5A1 SLC39A10 OLA1 FARSA RPS12 RPL13 OAZ1 RAB3C CTNND2 ATP6V0E2 TSPYL4 KCNC3 HTR2A QKI TAF7L ARL4C SERINC1 RTN4 SARAF ERH RAPGEF5 ADAM23 MAP2K1 NDUFA4 RPL10A LINGO1 HPCA GABARAPL1 RPL7 CDK17 PSMC3 PTMA BSG STMN3 GPR56 UQCRB SERPINI1 YDJC CNR1 THY1 MTRNR2L6 CAPZB ATP6V0C PELI2 UQCR11 PPP2R4 TIMP2 KRAS PCDH18 FAM134A PCYT2 SYN1 SLC1A2 RPL21 PNMAL2 RP11-20I23.1 STMN1 TMSB4X PCDH17 FSCN1 NXPH1 NRCAM SCG2 PDGFD TMEM59L MAPK1 NMNAT2 CHL1 EPHB6 RAB2A WASF1 SCD5 FGF12 TSPYL1 MIR6723 CYFIP2 ATP1B1 MTND1P23 STK24 MT-ND4L GDI1 MAPRE2 TUBA1B SLC25A6 KCNAB1 AES ATP5A1 ATP9A APLP2 OAT OXCT1 PTCHD4 GRIK1 SPRYD3 PRPS1 PGRMC1 MPPED1 MEGF11 ARF1 STXBP1 PHYHIPL CST3 CSDE1 NRIP3 CCDC184 IGF1 MAGED1 MBOAT7 SSBP3 HDLBP IQSEC1 CALM2 CNP TERF2IP CHN1 PNKD NHP2L1 COPG1 SYTL5 YWHAZ KIF3C PTPRT ABHD14A SNX17 LAMTOR5 ATP1A3 RPS28 ISCU DOCK10 EPB41L3 UBE2L6 CFL1 RPS2 EGFR NDRG3 SYT11 NME1 TGOLN2 CALM1 FAM174A FAT1 TPI1 RPL35 SSTR1 VDAC1 HNRNPH2 SLC6A1 APP TMSB4XP4 NCBP2-AS2 PTPRN EID1 VAMP2 CNRIP1 FTH1 RPL37A RPS15 DPP6 PPIA RPL3 RPL18A ATP6V1G2 GTF2H2C_2 AC244489.1 PCDHGA6 PCDHGA10 PCDHGA5 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RELN MT-CO1 DNER MT-ATP6 MT-CO3 SNAP25 MT-CYB CXCL14 CLU SCG2 FXYD6 SV2C EIF4A2 SPOCK1 SPOCK3 MT-CO2 CLSTN1 RTN3 MT-ND4 SLC6A1 RTN1 CHL1 PRNP ATP6V0B SARAF GABRA1 NCAM2 ATP1B1 SST BEX2 GAD2 DPYSL2 RPL41 SERINC1 MT-ND3 MT-ND2 DYNLL1 RAB3B TBC1D15 CERS6 TMSB4X HSP90AB1 HS6ST3 CCT5 HSP90AA1 NPTXR HMP19 FAIM2 SLC22A17 DPP6 RPL38 DOCK10 UQCRB RPL13 RPS15 TOX3 RTN4 FSTL5 TMX4 NR1I3 FXYD7 PLD3 MPPED1 SYN2 CHGB STXBP1 GRIN2A EPHB6 IDS RP11-20I23.1 RPS28 GAD1 GNB1 RAB6B RPL3 MORF4L1 LL0XNC01-16G2.1 BSG SCN1A PRKCB SCN2B ATP9A PTCHD4 BASP1 GPM6A ENO2 TSPAN7 LPPR4 ATP1A1 NHP2L1 ATP6V0C RGS12 ATP6V0E2 UCHL1 AP2B1 SEZ6L2 ATXN10 PSAP ATP1A3 RPL13A PCDH17 ATP6V1A EIF4G2 CNTN1 CALM2 STMN1 MORF4L2 PGK1 EGFR OR6D1P ARFGAP2 APLP2 DCLK1 ROBO2 CAMK2N2 NMNAT2 MAP2K1 KIF1A TRAPPC1 FKBP1A RABAC1 PEG10 C14ORF132 RAP1GAP2 SELT GNAQ YWHAQ PTMA SCOC RPL12 SCAMP5 NAP1L5 RHOB ALCAM SLC1A2 OPCML C11ORF31 APBB1 ERBB4 ENSA PNMA2 NIPA1 TUBA1B PBXIP1 EGFL7 MT-ND5 ARL4C FAM134A LUZP2 RAB3A PRDX3 PRKACB DHCR24 SLC10A4 CADM2 COL5A2 QDPR EEF1A2 TRPC3 PGRMC1 TMEM179B EFR3A MYL6 ITM2B B3GNT1 TPT1 RAB7A LAMA2 HPCA DKK3 NRSN2 ATP6V1E1 PCDHB10 AP2S1 ID2 UQCRH MT-ND1 NME1 DDR2 NCEH1 ATP2B2 SYT11 FTL GSTO1 ARF3 PEBP1 SPATA13 NACC2 SLC40A1 MAP1A LANCL1 MTATP6P1 UBQLN2 TOMM7 LMBRD2 AURKAIP1 RPS27A RPL21 DNAJA1 WBSCR17 NDUFA4 ATP6AP1 BEND5 FGF12 MAPRE2 TCEB1 PRDX2 MACROD1 CLIP3 RPS10 UQCRQ TMEM59L NBL1 RPL32 VSTM2A MYO16 MTRNR2L1 VCAN UQCR10 ATP6AP2 TOLLIP ARL6IP1 RAB3C TPPP ATP5I PPDPF GRINA MTRNR2L12 NDRG4 BEX1 GRIK1 FAM3C SLC7A8 NPTN MDH2 PRKAR1A SRP9 GPNMB PHYHIPL DUSP2 PREPL USP5 ATP1B2 NDUFC2 RP11-111M22.2 SYT4 PJA2 GUCY1B3 SSTR1 PRKCE ETV1 SOX9 TBCB PSMC5 RNF11 KCNC2 PGAM1 RREB1 ADARB2 MTCH1 NTHL1 SELM PLS3 CD59 SERPINI1 VDAC3 HSPA8 GAPDH SLC17A7 APP TUBB2A SYNPO NAPB KIF21A INPP5F TPI1 MYO1B MTRNR2L8 CNR1 ACTR10 VGF REEP5 LYPD6 DDN KCNC3 PCMT1 ELMO1 C4ORF3 FBXL16 AKAP12 COX7A2 SERF2 CTNNA2 ACTR6 SLC12A5 NDN SLC25A6 APLP1 CDS1 CCK NDUFB11 PFKP ACTB HRH3 WASL LSM4 RHBDD2 ATP2A2 ATP5A1 BLOC1S1 RCAN3 RPL10A CKB NGRN SERINC3 STMN4 AK5 MTND2P28 IMMP1L ATP5C1 SUSD4 BRK1 REPS2 NDUFB3 COX6A1 RPS19BP1 CAPZB PTPRN RCAN2 RPL11 CAMK4 CDK5 PITPNA NUAK1 SALL2 PKM KIT CST3 SLC25A4 SPRYD3 RPL8 NXPH2 NDUFA13 PNOC GPCPD1 NDFIP1 MAP1B BCAP31 PRKAR1B PSD3 RPS26 TMEM150C NPAS3 CACNA2D2 FAT1 TERF2IP CPLX3 AZIN1 PGM2L1 C18ORF32 SYNJ1 SCN3B YBEY SNRNP25 SUCLA2 RFK AP2M1 PNPLA5 SYT1 BSN BTBD11 TUBB ALDOA B2M RNASEK-C17ORF49 GABARAP THY1 PCDHA4 PCDHAC1 PCDHA10 PCDHA9 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MTRNR2L1 MT-CO2 MT-CO3 MT-ND1 MT-ATP6 MT-ND2 MT-CYB SYT1 CADM2 ZNF385D RAB3B MTRNR2L6 ASIC4 RGS12 MTATP6P1 DNER PCDHA4 RPL13A YWHAG C14ORF2 ATP1A3 RTN4 RNF11 TMEM160 PPP3R1 MT-ND3 MAPK1 CAMK2G CX3CL1 MTRNR2L8 NR2F2 RPL31 MORF4L1 CALM1 RPL23A RPL32 NACC2 SLC40A1 PREPL EID1 DLX1 VAPB AP2B1 PROX1 TMEM150C GPM6A LMBRD2 RTN1 CLU TMEM258 RELN COX5B MTPN NDUFA13 VDAC3 RPL26 ROBO3 SPOCK2 SEZ6L RPL35 USP27X SCOC MTRNR2L12 GTF2H2C_2 SYT11 NCOA4 HEPACAM PSMD8 PGRMC1 PCDH19 ARL4C SYNPR YWHAB VWC2L THY1 MRPL51 RPL13 PLCB1 B3GALT2 CNDP1 APP HSP90AB1 CERS6 IGFBP5 SNCB TPI1 GAD2 PPP3CB SNX3 COX17 UQCRH CLIP3 SLC9A6 OPCML ISCU RFK ELAVL4 DNAJB6 PSAP VIP PAM OR6D1P GRIN2A PHYHIPL MAP1LC3A RPL15 TUBA1B FAIM2 GAPDH WASL ALCAM PRKACB NDFIP1 TM2D3 CTBP1 EDIL3 ATP1B1 ADSS MAF PCSK5 KLC1 GABRA1 SUSD4 GRIK1 TOMM7 PCGF1 CAB39 PDE1C PCDH18 BTBD1 SLC6A1 RTN3 CNR1 RHEB ATP6V1C1 TRMT112 PITHD1 TUBA1A PNOC RPS28 TBCA PINK1 POLR2M GNG2 COX14 RSL24D1 RAP2A NSF GABARAP RPL18A CFH PTCHD4 RP11-219A15.1 ALDOA PCDHGA6 PCDHGA10 PCDHGA5 TF SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 MT-CO2 SNAP25 MT-ND4 MT-CO1 MT-CO3 ZNF385D IGFBP5 SYT1 CXCL14 MT-ND2 SLC6A1 GAPDH PRKACB PPP3CA VIP SYNPR RTN4 PTMA CALM1 ARL6IP1 MAP1B CAMK2G EIF4A2 CALM2 APP DNER NPTN TSPAN7 REEP5 EDIL3 BIRC5 CALM3 PJA2 YWHAZ OCIAD1 ATP2B2 SERF2 MT-CYB RPL26 EPDR1 RGS12 RPS3A MTRNR2L1 PREPL YWHAG PRNP ROBO2 MT-ND3 DCLK1 CADM2 RAB3B ATP6V0C RP11-20I23.1 VAMP2 CLU MTRNR2L12 OXR1 POLR2I ITM2B GPM6A SKP1 ACTB OLFM2 SYT11 ARL1 PPIA HSP90AA1 PRKAR1B RPL3 CKB GABRA1 BSCL2 HRH3 RPS4X MORF4L1 GNB1 RTN1 ARL6IP5 ATP6V1C1 FXYD6 GPX4 ZFAND5 TCEA2 FGF12 KIF5A RPL15 RFK CCDC184 TAC3 MT-ND1 ENC1 DIRAS1 NDRG4 SPOCK3 TAGLN3 RPL8 IDS MTRNR2L6 DNAJC21 RPL38 GPRC5B SNRPN SCOC GRIN2A GNG12 THSD7A SARAF RPL41 ACTG1 CREG2 IGSF21 PKM PAFAH1B2 TUBB2A NGFRAP1 NDFIP1 GAD1 UCHL1 MTRNR2L8 YWHAH TOMM70A CRIM1 GOT1 TMA7 SIRPA COL21A1 RPL37A UQCR10 PLD3 ADD2 PNMA2 SNCB CDK5R1 GOT2 SPCS2 MAP1A DCTN1 MAF PPTC7 VAMP1 PEA15 NFIA GABARAPL2 IQCK ENO2 HPCA TUBA1B PRDX1 RAB1A RTN3 EFR3A NAP1L3 OLFM1 FAIM2 MT-ATP6 SERINC1 RAB3C BNIP3 TUBB4A CITED2 ARF3 RNF144B PSMA7 ATP5F1 CHRM2 DPYSL2 RPS28 MSMO1 PREX2 SCN1A FIGN RPL31 TSHZ2 CPLX1 CERS6 RP11-111M22.2 ERBB4 CFL2 CNTN1 SNAP91 FTH1 SUMO2 ATP5B NAP1L5 PINK1 KCNC2 RAB6A CD63 USP5 MYL6B TCEB2 RPS15 KIFAP3 EPHA6 PRUNE2 GPR158 YWHAB MTATP6P1 SPARCL1 CD99L2 WASF1 GNAQ TMSB10 KIF1A NDUFA11 CMAS PSAP ATP2A2 AES LANCL1 CMPK1 ALDOA NR1I3 ATP6V0B C1ORF52 PPP1R7 MAPRE2 RHEB SUMO1 RCAN3 GHITM BTBD11 TMEM160 IL33 MAP1LC3A FBXO8 ATP5I PIP5K1B ALDH5A1 NDUFAB1 VSNL1 GRIP2 MPC2 ATP5O MRFAP1 BLOC1S1 NRSN2 RP11-632C17__A.1 MAPRE3 PLCB1 MRPS21 NCDN RPL36A SCN2B APLP2 COX5A DYNC1I1 RAB5C B3GNT1 LPPR4 CHGB ACTR1A LIN7B PHB HSPA8 LGI3 DNAJC6 NDUFC2 MRPL12 GDA REEP2 CLTB C14ORF2 ADAM23 THY1 C19ORF53 VWC2L SCAMP5 MORF4L2 GNG3 COPG1 SLC7A8 DRAP1 TMEM130 PAM GNG2 ENO1 ARL8B C4ORF3 ARPC4 IDH3A PGM2L1 ATP5A1 ITPR2 PCSK1N GDI1 CLTC BEX2 PAPPA YAF2 SYNJ1 FAM134A D4S234E MGST3 MFN2 RPLP0P2 TUBD1 TMEM14A CRYAB AP2M1 BAI2 NAA38 PCBP1 HMP19 ATP6AP2 PLEKHF1 NAP1L2 SQLE SULT4A1 TMEM258 MTPN AP2S1 DMTN IGF1 ATP5G3 CSDE1 LRRC59 PSMD12 POLR2M SIRT4 CTSD GRIN1 SLC25A5 CAP2 MAP7D2 CAMK4 MAGED1 SYN1 ELAVL2 PPARGC1A FAM19A2 FABP3 CHL1 PRKCB GPX1 PRKCE HAPLN4 AP1S1 UQCRC2 HOMER1 PHYHIPL RASSF8 GSKIP GREM2 COX6B1 CNR1 SLC25A6 SEZ6 LMBRD2 DNAJB6 TSPYL1 TMX4 RAB3IP PFDN4 TXN LAMTOR1 PGAM1 TIMP2 RPL39 WBSCR17 CTBP1 RPS26 NHP2L1 NDUFA4 SPTBN1 PPP2CA CORO2B UBC TMEM141 BAG4 HEPACAM HSPB1 UQCRH TRIM37 NDUFB8 IGFBP6 SLC9A6 PPP2R2C RAB6B ATOX1 MAGED2 CLDND1 SLC38A1 SEMA5A NAT8L KLHL5 GAP43 EPS15 RPL11 FBXW11 PCDH18 CDC42SE2 TOMM34 CLSTN1 PFN1 CCK AP2B1 CCDC85B UBA52 PARM1 FAM149A SEZ6L STXBP1 SLC24A3 NR4A1 PTPRN2 CAMKK2 KIF3C SUMO3 TCEAL7 SCG2 C6ORF1 FBXL16 RAB11A BCL6 CPE ATP6V1E1 KCNK1 ALDOC RASGRF1 RELL2 CRIP2 SRP14 INPP5F DLX1 GDE1 TCEAL3 TSPYL4 COPE RPS2 APEH ETS2 LGALS1 HPS6 PPP3CB CNTNAP5 SYPL1 SH3GL2 ZNF804A COPRS UBL4A LGI2 RAB2A NKIRAS1 FAM131B CHP1 TM2D3 NELL1 ATP6V1F TOMM20 FBXO2 MAP1LC3B AZIN1 PPP2R4 TUBB TKT VDAC1 NFE2L1 CTNNA2 STMN4 SCD LRP1B ASIC4 MDH1 MT-ND4L RBX1 CALN1 CLDN10 RPL7 HOPX AKR1C2 HS6ST3 ACTR10 PROX1 SRR ARPP19 TMOD2 BCKDK GAD2 INSIG1 PTPRN RGS16 UBE2M SELM TMEM59L SYNPO DKK3 ATP6V1B2 TCEB1 MARCKSL1 COL11A1 ATP1A1 OPA1 UQCRB CAPZA2 PPA1 NCEH1 HSP90AB1 PGRMC1 CDH13 CLIP3 EGFR KCNAB1 PPP1CB CD163L1 KLC1 ADAM33 TRMT112 ATP5G1 CRKL RAPGEF5 RNF208 OAZ1 NEGR1 NAPB KCNAB3 LINGO1 SLC1A2 YJEFN3 SCD5 RPL32 PTGDS RELN DYNLL1 WFS1 RPS27A ANXA6 FARSA PRDX2 AK5 B2M CABP1 NPR3 DSTN PIN1 OAT AP3S1 SCN1B GSTO1 CYFIP2 FASN SLC35B1 RNF11 C18ORF42 PLD5 NRIP3 NDUFA13 RPL23A ATP6AP1 NMNAT2 HPRT1 SUCLA2 GRIK1 ATP1A3 TBC1D15 RPL18A RP11-219A15.1 RNASEK-C17ORF49 AC244489.1 PCDHA10 PCDHAC1 PCDHA9 PCDHA4 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 SNAP25 TAC3 EIF1B ATP1B1 PEBP1 FAIM2 INPP5F NDRG4 YWHAG ENC1 ZFAND5 PSAP MT-CO3 SYT4 HSP90AA1 SPOCK2 PCDHGA6 KCNAB2 GAD1 GAPDH VIP CREG2 GPM6A RNASEK-C17ORF49 SSTR2 PITPNA CADM2 SAP18 STX1A ACOT7 C9ORF16 PSMC1 JUN DIRAS3 PPIA ATP9A C14ORF2 MTCH1 SEPT4 MAP1B TSHZ2 PTMA FASN COL11A1 TENM3 GUCY1A3 HMP19 REEP5 CALM3 FSCN1 GNG12 ATP1A3 GRINA RAB11FIP5 RPL11 RAB3A SLC6A1 MLLT11 NR2F2 ZNF385D MT-CYB NDUFB1 KIF1A CPE THY1 NFE2L1 MT-ND3 ADAM33 COL21A1 CLU DNM3 RNF181 RPL3 NPTXR DPY19L1 CCDC184 ATP5E ELMO1 GRIN2A IDS TMEM35 CDH13 SPOCK3 POLR2K APLP1 SERINC3 RTN4 BAG4 DNER RPS26 CXCL14 NFIA ADAM23 MT-ND2 SLC1A2 SDF2L1 CLTA RPL39 CYB5R3 UBL5 ARPP19 TMEM130 MAPK1 PAK1 PDE1C EGFR FTL DCC CALM2 SNX3 CD99L2 NCDN MCTP2 THSD7A TMEM200C FNDC4 NDUFB10 TUBB2A VAMP2 GUCY1B3 HAPLN4 HMGCS1 ANXA7 RGS12 NPTN TPGS2 MDH2 MT-ND4 ARHGAP35 COL9A1 RAB3IP RPS5 FIGN CLSTN1 PLD3 RTN1 TMTC4 NAPA SQLE CACNB1 DNAJC6 SLC6A17 TSC22D1 ARL4C UROS HLA-B NGRN RPL21 RPL13A CFH RPL17 RPL17-C18ORF32 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CCK SYT1 CNR1 ATP1B1 TMSB4X FAIM2 FXYD6 RAB3B NRCAM RPL23A CLU MYEOV2 ATP2A2 SERPINI1 DPP6 APP RAP1GAP2 PCDH8 HMP19 SYT6 SGCD SYTL2 ZNF385D PLEKHD1 ATP6V0E2 GAD1 DKK3 YIPF3 COX6C SPARCL1 THY1 CKB ANXA7 MT-CO2 SYT11 OR6D1P CAB39 RPL11 KCNF1 ROBO2 RPS3A SELT ATP5G1 MRPL51 RTN4 UCHL1 CHRNA2 RAMP1 KIF21A ARL4C TNS1 ATP5J MORF4L1 SPTBN1 FTH1 CLSTN2 QKI CALM2 MTRNR2L1 RTN3 BTBD10 MRPS21 LMCD1 NR2F2 KIF1A ITM2C CLPTM1 CLSTN1 CAMKK2 SPOCK3 ACTR10 KLHL5 PSAP NAPA PPIA DNAJC5 ITM2B FTL PNMA1 RPL26 CALM1 PET100 PRNP NDUFC1 NDUFB8 PARM1 TMEM35 PPP2R1A EPDR1 RPL31 ZBTB18 PI4KA RAP1GDS1 FAM3C BEX4 NTNG1 PCSK1N SRM RPL6 NECAB1 CYB5R3 VSTM2L SYNPR C1ORF56 MAST3 ATP1A1 ARL6IP1 SPOCK2 WNT5A ACTB DYNC1I1 KCNA5 COX7A1 NDRG4 GPM6A SNAP25 UBE2N CALM3 DPYSL2 USMG5 DNER ATP10A NCALD PTPRZ1 ENSA TPT1 UBC COX6A1 NEGR1 RPL37A CLDND2 C6ORF1 NPAS3 RTN1 RPS28 NAPB RP11-111M22.2 BCAP31 HMGCR MAP1LC3A SYNGR1 C19ORF70 UQCRQ APLP2 ATXN10 DHCR24 SCD5 SLC6A1 ATP6V0C IDS RP11-20I23.1 RPL13A RPL21 PCDHGA10 PCDHGA5 PCDHGA6 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MTRNR2L12 MT-CO3 MT-ND1 MTRNR2L1 MT-ATP6 CNR1 MTRNR2L8 GAPDH CXCL14 MT-CO2 ATP1B1 MT-ND2 MT-ND4L MT-CYB SYT1 RPS15 CCK MTATP6P1 ZNF385D MT-ND3 CPLX3 PCDHGA5 ADARB2 MORF4L1 SUCLA2 OXR1 SCG2 SLC22A17 CPE RPL36A HSPA4 PSMD12 SEPW1 METTL7A APP RGS12 EIF4A2 MAF PACSIN1 PGM2L1 FABP5 RTN3 GFRA2 LYSMD2 CALM1 ADAM33 DPP6 CALM3 CRIM1 DNER PCP4 RAB3B SYTL2 IDS MTRNR2L6 RAB6A DOCK10 PBX3 SSBP3 TSPYL4 UBB MDGA1 RFK DPYSL2 CLTC ATP6V1B2 HMP19 EHD3 MAGED1 D4S234E PLP1 AP1S2 PRKAR1A HIF3A CDK17 SLIT1 PPP2R2C TOLLIP MYL6B PTPRN UCHL1 TRIM37 H2AFZ TSPAN18 RTN4 PSAP RPL8 TUBB2A VSTM2A SNAP91 PSMD2 SNAP25 KIF1A ARL4C CERS6 CAMK2D PHYHIPL ACP1 MRPL55 UQCRC2 ATP5A1 NDRG4 PTPRZ1 COX5B STC2 GDI1 YWHAB CREG2 PGRMC1 NCALD SUMO3 ENOPH1 PTMA ENO1 RPS2 SCOC ACTR10 FKBP8 CBX6 PRDX3 FGF12 ELAVL2 GMFB IQCK TMEM130 PAFAH1B2 MAPK1 BAI2 RPS6 PCGF1 PRNP COX7C KIF21A NDFIP1 DYNLL2 ZNF536 NOP10 SCN1A MYO10 KLF2 ARL6IP1 RPL3 CRYAB DNAJC4 TPPP RLIM DKK3 KLC1 SLC9A6 YJEFN3 ARF3 PPP2CB FTH1 FSTL5 BCAS2 CHST11 HINT1 RABAC1 BEX1 SRP9 USMG5 ETFB GABRA1 ATP11C UBA1 TMSB10 GGNBP1 ZCCHC12 SLC25A22 NCOA4 TAGLN3 HGFAC GPR98 PNMAL2 PSMA7 CTNND2 LAMTOR2 SERINC1 CALM2 SLC7A8 GRIN1 SEC61G ATP1A1 STMN1 SYT11 ACTG1 TUBA4A ATP6V1C1 NRCAM SH3RF1 TMX4 AES CDKN2D TENM1 YAF2 NAPB DNAJC6 SCN2B CNTN1 TUBA1B ZBTB20 MT-ND5 RPS3A LMO3 PCDH17 MRPL52 GHITM TSHZ2 MRPS7 APLP2 IGF1 B3GNT1 NAP1L2 ARFGAP2 RNASEK-C17ORF49 ATP1A3 RPL13A HNRNPA1P40 PLEKHD1 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-ND3 MT-CO3 MT-ND1 MT-ND4 MT-CO2 MT-ND2 MT-CYB MT-CO1 SLC1A2 MTRNR2L12 MAP1B RTN4 MTRNR2L1 CALM1 SYT1 PTMA ATP1B1 SPOCK2 ARL6IP1 ATP1A3 PRKACB SOX9 PRNP PEBP1 MTCH1 NFIA ARL4C MT-ND5 NDUFB8 DYNLL1 OXR1 ZFHX4 MT-ND4L ZNF385D MTATP6P1 CLTC SERF2 RTN3 MGST1 PCDH17 CADM2 TXNIP ERBB4 ATP5A1 CPE PREPL THSD7A MPC2 CREG2 ALCAM STRAP ARL8B PRUNE2 SCN1A CLSTN1 METTL7A PTPRN2 NDRG4 RAB3C GABRA1 GPM6A KCNC2 DPYSL2 SLC24A2 PKM DMTN TMEM200C MT2A DKK3 AZIN1 PNMAL1 CDH7 ENC1 PPIH EIF1 KLC1 NR2F2 RPS28 PPP3CA EIF4A2 ATP1B2 SLC1A3 CERS6 SYNPR CLU COX5B IMMP1L STXBP1 RPS12 BSG TF NR1I3 RP11-219A15.1 AP3S1 GABRG1 EZH2 HIF3A PPP2R2B PTGDS SLC39A10 GPRC5B SPOCK3 ANKRD18A DRAP1 FTL OPCML DCLK1 SLC6A1 MRPS21 RPL41 COX7C WBP2 PPA1 OAZ1 DLC1 RPL37A SLC38A1 CABP1 VAT1L CYFIP2 C12ORF60 PLD3 PHPT1 RPS27A TSPYL4 FAM219A ATP5J SUB1 PPP2CA UBC MTRNR2L8 ATP5E SNX10 YWHAG MT3 CNR1 DNM3 KMO MYEOV2 MAGED1 NAT8L COX7A2L TLE4 ATP6V1C1 DGKG NPTXR ALDH1L1 DPY30 NHP2L1 NAP1L3 KIF1A PSAP PCBP1 CTSD PTPRN GORASP2 PSD3 FAIM2 ATP5I WFS1 KIF21A COX4I1 CHRNA2 GPR98 BCAT1 BEX1 FGF2 PODXL ABHD14A HTR2C C19ORF43 RPL11 BEX4 EZR PPP5D1 SLC39A3 ANGPTL4 APLP2 SNAP25 SLC22A17 RPS4X TMEM59L SNRNP25 RPL38 ITFG1 ROBO2 PARM1 VIM GNB1 ADAM33 MAGED2 PTGES3 CAMKK2 HSP90AB1 SCOC ACTG1 KIF5A RP11-632C17__A.1 DYNLT3 OAT PPIA DNAJC5 GABARAPL2 SYNGR3 FAT1 ARL6IP5 COX6B1 SERPINE2 PRKCB ATP5B FAM134A LHFP PLCB1 CCDC169 SNRPN DNAJB6 NDUFA13 RPL10A APP ATP6V1B2 GUCY1A3 PRDM16 RPS10 RHBDD2 INA PAQR8 TKT TMX4 DCC EID1 GAD1 CLIP3 IGF1 STOX1 HFM1 SRM SPCS2 FBXW11 TRIM37 RPL32 IGFBP5 ZBTB20 YIPF3 NCEH1 GNG12 MAPK1 NDUFA4L2 MTND2P28 SSTR2 NCALD ENOPH1 EIF4G2 RPL13 GDA SLC14A1 GOT1 EPDR1 HSP90AA1 ETS2 GJA1 MAP7D2 LGI3 LDHB RAB3A TSPAN7 NAP1L2 RHEB USP5 BASP1 ZNF804A TSC22D1 CDKN2D GRIN2A KLHL12 ATP6V1G1 CCDC25 PON2 STMN2 MRAS PLS3 NEGR1 TRIB2 CAMK2D GRM3 SPATA13 TOMM70A SMOC1 COL21A1 GNG5 ZFAND5 TPPP CLTA NFE2L1 VAMP2 SPARCL1 NBL1 SPTBN1 NDFIP1 FXYD6 ATP6V0C UCHL1 RGS12 APLP1 SFTPD RP11-20I23.1 FABP5 VPS35 SOCS3 SUMO2 MLLT11 EFR3A DIRAS3 NCAM2 NCDN GSK3A RAB40B TAGLN3 DNAJC21 TBC1D15 RNASEK-C17ORF49 NGRN TLR4 RPL17 RPL17-C18ORF32 MTRNR2L6 ATP5O ATP6V1G2 RPS26 RAB3B PCDHGA6 PCDHGA10 PCDHGA5 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CXCL14 SYT1 MT-ND4 MT-CO2 RPL31 SNAP25 RPL26 ATP1B1 RTN4 RAB3B DKK3 SST TMSB4X HSP90AA1 CNR1 CALM1 GABRA1 ATP5G2 MT-CO3 ZFAND5 CCK GPM6A PGAM1 CHST11 NGFRAP1 PRKACB MT-CO1 RPL3 CNTN1 NR2F2 THY1 VSTM2A STRAP ZNF385D TF RPL39 UBC CPE NDUFA1 GAD1 CLSTN1 ZBTB18 PLS3 MTRNR2L12 PREPL ISCU APLP2 SNX10 TMEM130 PIK3R1 RPS15 EIF4A2 MT-ND1 ATP5B COX5B ENO2 CD99L2 EGFR NDFIP1 SCN2B MT-ND2 RPL37A STMN4 C19ORF53 CALM2 RPL38 MAPK1 TERF2IP GNG12 COX7A1 ACTB KIF1A UQCR11 KIT GDI1 KLC1 PROX1 ELAVL2 NAP1L3 ARL6IP1 TMSB10 HSP90AB1 NGEF PITPNA NR1I3 LMBRD2 TSPYL1 NDRG4 DNER BASP1 SNCB STXBP1 SHISA6 UBE2QL1 GRIN2A BNIP3 CHL1 PKM LANCL1 GRIK1 IFI6 NCAM2 UQCRC1 SRP9 MPC2 BEX1 PPP3CB PNMA2 CPLX1 CHGB ARL4C RNF212 TAGLN3 HS6ST2 PTPRZ1 SKAP2 NDUFC2 RTN1 ISCA1 MORF4L2 TPD52 CNP SYT11 LIMK1 PNOC PAM COX4I1 RPRM CLTB PPP2R1A COX7B PRDX2 TTN TMTC4 POLR2K TP53I11 RPL35 MAPK8IP2 CCDC85B RP11-20I23.1 SUB1 ASAP2 NARS PELI3 NDUFB5 HSPE1 MAPRE2 SLC25A22 APLP1 LPAR2 COX14 ST8SIA2 PEG10 BCAS2 PRDX1 CAB39 PGM2L1 SPOCK3 TPRG1L ATP2A2 SDHAF1 MT-ATP6 ZNF536 HDLBP GRIN1 KIF21A COMMD6 RPS28 ERBB4 AP2B1 MTATP6P1 CKB ADAM33 CRYM NDUFS5 TMEM35 SLC22A17 TMEM117 NAPB THSD7A PSD3 SEZ6 RHOA CSDE1 PEX5L CAP2 NAP1L2 RPL10A PSAP DDN RLIM GUCY1A3 CCDC115 DCN SERINC1 NEFH PNMAL1 GABARAPL1 PLCB1 MYL6 MLLT11 CXXC4 PLD3 COX7C MT-ND5 PLD5 SEZ6L2 C1ORF233 GNG2 MAPRE3 RANBP1 NDFIP2 RNF11 SEPW1 BMP2 PHYHIP SPARCL1 NMNAT2 RTN3 MRPS21 TSPAN7 ARHGDIG UQCRH MSMO1 SYN1 CEND1 SLC12A5 RHOB TBCA GPX1 FAM84A OXCT1 SLC6A17 NPAS3 PRDX5 HMP19 UBL4A NBL1 FXYD6 COPS7A KLHDC3 SYT13 SCOC MAP1B PEBP1 TUBA1A FRMD4B DPP6 PHYHIPL GDF10 RPL13A GPR26 CAPNS1 LGALS1 PTMA H2AFZ TMEM151A SLC1A2 ATP6V0E2 SYNPR PRKCB CLTC MTRNR2L1 NUDT21 NCKAP5 SLC7A2 AP2S1 COBLL1 COL21A1 ALDOC PFDN4 MAP4 CHP1 ADORA1 RAB3C WBP2 ATP5J ACTR1A GAPDH SCAND1 SNAP91 ADD2 TUBB2B ROBO2 GRIN3A IGF1 PIN1 MTCH1 CST3 CAPZA2 MACROD1 MAP7D1 OAZ1 SCG2 SYT17 TCEAL2 ITM2B DNAJC6 KIF5A RPS5 BEND5 RRAGA ATP2B2 ACAT2 ACOT7 RPS27A PTPRM PNMAL2 RAB2A CADM2 CPLX2 ATP1A3 PSMD2 ENO1 DIRAS1 LPPR4 MT-CYB GOT1 TENM1 AP2M1 UQCRB CYB5R3 EPHB6 TUBB2A EDF1 HEG1 ATP6V0C EPHA6 RCAN2 RAB1A SAMM50 GPATCH4 SCN3B NPTXR TPT1 CDH8 CREG2 DCC ATP6V1F NCEH1 OXR1 ATP6V1G2 AC244489.1 ALDOA IDS NUDT4 ARF5 TUBB3 MTRNR2L6 RPL21 PPIA RPL36A NSF GTF2H2C_2 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 RAB3B SNAP25 GDI1 MT-CO2 ARL8A ARL6IP1 HOMER1 MAP1B LL0XNC01-16G2.1 SYNPR NAP1L3 ATP6V0E2 SKP1 PROX1 SCN1A ATP1A3 GABRA1 TSHZ2 PREPL TPRG1L INPP5F APP PRKAR1B SEZ6 MTRNR2L12 QKI SLC6A1 MAP4 TF ZNF385D CHGB ESCO2 ADARB2 SLC9A6 LMBRD2 BIRC5 SNCB NDRG4 ENC1 QDPR LIMK1 PCMT1 SLC38A1 EIF1AX SMOC1 ACOT7 KCNF1 CACNB1 DNAJC5 PTMA ATP5B CDC37 UBC MTRNR2L1 THSD7A CA11 DKK3 SPOCK3 TBCA CBX6 HSP90AB1 RPL32 PCDH8 NAT8L NR2F2 TSPYL1 DNAJB9 UBL5 SYT13 PCDHA4 RELL2 CKB TP53I11 RPL31 OCIAD1 VWC2L MT-ATP6 ARHGAP35 PTCHD4 TSC22D1 CLSTN1 HMP19 CLU DNER FXYD6 RP11-195F19.5 GABARAPL2 RPL13 ACTR1A EXTL2 CISD1 AP2M1 PSMC3 RTN1 PSAP SARAF SCN3B OR6D1P SLC22A17 LGI2 GHITM DMTN ITM2B VIP PRKCB MAP2K4 NAP1L2 DSTN CALM3 SLIT1 ID1 ANKRD26P3 NMNAT2 KIT VAMP2 NGFRAP1 EDIL3 RTN4 SUMO3 FAIM2 COX6B1 SPOCK2 MTRNR2L8 LRP1B CERS6 OPA1 OLFM1 MT-ND1 FAT3 FIGN PNMA2 SELT PGM2L1 KIF1A NARS ATP1B1 CAP2 ATP6V1E1 APLP1 UBQLN2 CEND1 TM2D3 RPS15 FABP3 TSPAN7 COX7C ROBO2 GAD1 RPL13A TIMP2 MT-ND2 TUBA1B PARM1 SCG2 C19ORF10 SH3RF1 CADM2 SNRPE RPS28 GPX4 SNAP91 NDUFC2 RBX1 SYN2 SYT4 KIFAP3 GRIP2 MORF4L1 HOPX ITFG1 CYFIP2 PEBP1 TAC3 PEX5L SLC22A3 RP11-20I23.1 RPL17 ATP6V0C RPL17-C18ORF32 NGRN IDS MTRNR2L6 RPL7 PCDHGA10 PCDHGA5 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 RPL41 ATP1B1 MT-ATP6 MT-CO2 MT-CO1 RPL13A IGFBP5 CCK MTATP6P1 MT-ND2 RPS28 MT-ND3 RGS12 TMSB4X RPL3 FXYD6 RPL26 RPL21 CKB RPL17 RAB3B PRNP RTN4 GAPDH TSPYL1 SYNPR UQCRB RPL7 MTRNR2L12 MT-ND4 MT-ND1 CADM2 RPS12 RPL37A MTRNR2L1 SERINC1 RPL35 EIF4A2 OXR1 PSAP PREPL PTMA RPL32 RPS15 GRIN2A GPM6A HSP90AB1 CALM2 RPS27A OLFM1 FTL SNAP25 VSNL1 TAC3 CYFIP2 TSC22D1 VIP GPX4 TCEA2 STXBP1 ATP6AP2 HMGCS1 RPL23A RPL15 FKBP4 PPP1CB SLC6A1 RPS26 MRPS21 SLC22A17 ALDOC USMG5 RPL38 ENO2 RPL10A ERBB4 CFL1 TUBA1A SCG2 CDH13 OAZ1 RPL13 RPL31 C14ORF2 COX4I1 ATP5J2 ZNF385D RP11-20I23.1 ATP6V0C SEPW1 MYBPHL ATP1A3 ROBO2 LRRC39 DLX1 FSCN1 KLHDC3 GNAQ SEZ6 APLP2 B3GNT1 ACTB GUK1 CHGB VAMP2 SYT1 PRKACB FGF12 TPT1 MAP1B CALM1 CHRNA2 NDFIP1 DNAJB6 TOMM7 NGRN CCDC184 NDUFA1 KIF1A CLTC OPCML TERF2IP CLU VSTM2A GAD2 DRAP1 TUBB2A NCALD DSTN PRDX2 GUCY1B3 RPL11 STK24 MORF4L1 STMN2 RPL8 ITM2B COX7C PRUNE2 RNF11 CBLN1 KIAA1211 RTN3 VSTM2L ATP1B2 PRKAR1B SH3BGRL3 GRIN1 MAF RPS6 PPIA RNF181 ARF3 LDHB SNAP91 SMS ATP2B2 FARSA RPS3A D4S234E CADM3 SPOCK2 TCEB2 KLC1 PNMA2 DPYSL2 COX6B1 PROX1 UQCRH TKT RPS10 WBP2 PFDN1 SKP1 RPL12 CNR1 GABARAP RPL36A MTRNR2L6 ALDOA DNAJC21 UBE2N RPL6 BSCL2 UQCRQ RTN1 EIF4G2 SALL1 CRH SLC17A7 QDPR ATP5O ARHGDIG FAM96B GMFB FAM127A ATP5E PSMB7 C19ORF10 SCD5 ZNF536 CFL2 PRDX3 TOMM20 EIF1 OST4 PCMT1 SRP14 SELT SERINC3 MT-CYB AC244489.1 DOCK10 TMOD2 ABHD14A GBE1 DNAJC5 PEPD GPR158 COX7B EID1 MDH1 EDIL3 WSB2 BTBD11 MZT2B AKR1C2 MAP4 BSN ARL8A NGFRAP1 RABAC1 SOD1 NRIP3 ATP6V1A CPNE2 MRPL11 CDC42SE2 GOT1 NHP2L1 POLR2K MAP2K4 LYPD6 CAP2 CA2 RPL18A MTND1P23 PGK1 BCAP31 CLIP3 NFE2L1 ATP5B ASIC4 SERF2 PPIF NR2F2 LAMTOR2 CNTNAP5 NDUFB7 UQCR10 RAB3C PDE9A COX6A1 REEP5 KCNK2 LINC00116 TSPAN7 MRAP2 LPPR4 ATP1A1 GABRA1 CREG2 AGA CDK5R1 PKM EDF1 PTGDS MAPRE2 UBA1 YWHAZ VDAC1 KCNIP1 DPY19L1 RAB6B HNRNPH2 TMSB10 NOP10 NARS NDUFB4 SDC2 IQSEC1 ATP5J CALM3 MTRNR2L8 ENC1 KLHL5 IDS DNER EPB41L3 PREX2 COMMD6 STMN4 PDP1 MAGEH1 DCLK1 JAKMIP1 NDRG4 MRPL20 DPP6 BEX2 HSPA4 GAD1 SYT11 C6ORF1 SERP2 MAP2K2 LAMTOR5 PRDM8 BRK1 CST3 LMBR1 GUCY1A3 NAPB OLFM2 PRDX1 TMEM59L FBXL16 KRAS TMEM147 ARPC4 CD163L1 YWHAG PPP2R1A ID2 CSDE1 DYNLT3 ARL4C CHL1 RAN NRSN2 HEPH HPCA SLC24A2 SEMA4G DHCR24 SLC7A8 TEFM ADSS MGST3 OR6D1P NSF RAB3A CYCS TOLLIP RAMP2 ATRN NEK7 SLC25A6 SYNGR3 MYEOV2 FSTL5 NINJ1 SYNJ1 PSMA7 PIP4K2A PINK1 BNIP3 SNX10 DYNLL1 FAM3C DYNLL2 ARL6IP1 RRM2B SUSD4 CNRIP1 PLS3 FAIM2 CA11 KCTD12 ATP6V1B2 ITFG1 ALDH5A1 WBSCR17 TGOLN2 RPS2 SUB1 KCNAB2 COPE GRIK1 RPS5 RLIM YWHAH CLEC2L APLP1 TSPYL4 MAPK8IP2 NDUFA11 CBX6 KITLG ATP5G1 ARL6IP5 DNM3 CRIM1 MSMO1 NDUFA5 CAMK2G NUAK1 SERPINF1 APP MRPL51 HSP90AA1 CITED2 OCIAD1 MFSD6 SCN3B FTH1 ATG101 CLDND1 SCN1A DIRAS2 SLC25A5 PJA2 DDAH1 RP11-111M22.2 PLD3 ARL8B PPTC7 VWC2L SYT5 PEBP1 ISG15 NRCAM UQCRFS1 TUBA1B ATP5H ZBTB18 FBXW11 AK5 WASL MAPK1 PSMC5 APOE NDUFB10 C4ORF3 DIRAS3 GNG3 POLD1 FBXO2 CXCL14 PVALB PPP2CA PPP3CA PIK3R1 ATP6V0E2 RP11-413E6.1 UBA52 ATXN10 CABP1 BAG4 RBX1 HMP19 RPS4X RHBDD2 GTF2H2C_2 PSMB3 RNASEK-C17ORF49 ATP6V1G2 TUBB SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CNR1 CCK ATP1B1 RELN NDFIP1 SYT1 CXCL14 APP PGRMC1 PPP2R1A MT-CO3 DNER CHL1 CADM2 MT-ND1 NECAB1 DKK3 DPYSL2 PPIA GDI1 PPM1A GABRA1 NAPB FXYD6 GRIN2A SLC22A17 RAP2A ITM2B GPM6A SNAP25 ZNF536 PPP2CB ATP2B2 TERF2IP ATP6V1B2 GABARAPL2 SCD5 AP1S2 SERINC1 CLSTN1 PRNP BIRC5 VSTM2A HSP90AB1 MAP1B PTK2B TUBA1B TMEM59L TSPAN7 TGOLN2 TENM3 CAMK2D CALM1 RP11-219A15.1 PNMA2 HAPLN4 PRUNE2 HGFAC COX8A MARCKS ATP6V1C1 SLC12A5 MT-CYB HTRA1 TPT1 PSAP MAP2K2 MED10 ATP1B2 YWHAZ MAGED2 SRP14 SLC39A10 KIFAP3 NRGN NCDN GUCY1A3 FAM134A OLFM1 RPH3A SLC9A6 LMBR1 ATP6V1F MORF4L1 GSTO1 TMSB4X RABAC1 CLTB CTNND2 PAX6 EPS8 STX1B SOX2 PGK1 KIF21A ATP5G3 BEX1 RTN3 MAP1LC3B PAFAH1B2 DNAJC6 ACTR10 ATP6V1G1 TENM1 RNF11 RAB3IP NELL2 ATP1A1 NPAS3 SLC25A22 ENO2 SOX4 AZIN1 RPL39 PCDHA4 MAPRE2 OPCML MPI COX14 TUBA1A PLS3 MT-ND2 KLHL5 MT-ND3 GAD1 DYNLL2 CDKN2D SEPW1 QKI MT-CO1 MTUS1 CHP1 FUNDC1 ALDOC EIF4A2 ARL8B APLP1 PSMD12 SH3GL2 GFRA2 MAP7D1 FAIM2 ISCA1 SPOCK1 NDRG4 C14ORF132 CREG2 TAGLN3 CHGB TMSB10 EIF1B PREPL TMEM11 SLC38A1 RPS6 PLCB1 SPOCK3 CYCS PPP3R1 GPRC5B NRIP3 VSNL1 TRHDE HMGCS1 MT-CO2 GRIP2 PLCXD3 SCG2 AMIGO2 CLTC MAPRE3 CFH PIN1 CCDC168 GNAQ PPP1CB PRPS1 PCDH8 CTD-2179L22.1 COL12A1 SNCA GABRG1 ATP5B STMN2 SCN1A PINK1 TSPYL4 FGF12 GRINA MAP4 ATP6V1A MT-ATP6 SYNGR3 SLC7A2 TIMP2 ATP1A3 ELAVL2 UQCRC1 OAT CHMP4B GAPDH TCEAL5 UQCRB CHMP5 SCN7A PKM CNTN1 HDAC1 DDR2 SEZ6L TCEA2 FSTL5 C19ORF10 SPTBN1 ARF3 DYNLL1 MZT1 P2RX6P CPLX3 GPX4 PRDX1 GYG1 UBL5 RPS28 SLC7A8 EIF4G2 CDK5R1 ATP9A BCKDK HCN2 HMP19 TSC22D1 RAB3B ZNF385D SYTL2 HNRNPA1P40 FTH1 NGRN RPL36A ALDOA NDUFA13 NUDT21 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 MT-CO2 SYT1 PENK ATP1B1 ARL6IP1 MT-ATP6 NAP1L3 SYNPR GPM6A DNER SERINC1 DLX1 VAMP2 CLIP3 TSPAN7 YWHAB VIP MARCKSL1 TIMP2 GAD2 MT-ND1 NAP1L2 WASL EDIL3 INPP5F GAD1 MAPRE3 HMP19 RPH3A ENO2 ATP1A1 RTN1 PLD3 PRNP CADM2 CALM2 MTATP6P1 MORF4L1 MAP1B CAMK2D EIF1 HSP90AB1 MT-ND4L SNAP25 RAB1A VSTM2A PREPL SPOCK1 NCEH1 MT-ND3 CDH13 ANXA7 THSD7A TMSB10 OPCML PCDHA4 MT-CYB ARL8A NPR3 NRCAM KIF21A PEX5L PNMAL1 ATP5E SERF2 FXYD6 NPTN SCD5 ALDH5A1 DMTN PCYT2 CAP2 ACTR10 PLD5 TUBA1B RTN3 MTRNR2L1 LUZP2 GUCY1B3 SCN1A ENC1 TAGLN3 RNF11 OXR1 HNRNPH2 RGS12 CD63 TSC22D1 CPE GHITM RLIM NDUFS5 USP5 HSP90AA1 REPS2 INA STMN1 CSDE1 TSPYL1 PGM2L1 ABI3BP RPL37A CHN1 AP2M1 NEGR1 OPA1 VDAC3 SLC22A17 RAB3B WBP2 CLU RPL35 GAP43 KIFAP3 SERPINE2 CETN2 C11ORF84 GRIN2A APLP2 CAMK2N2 PRDX3 TMEM150C SLC6A17 NUAK1 TMSB4X NARS HPCA RAB3IP ALDOC ASPDH CACNA2D2 GNAQ C16ORF13 MTUS1 LINC00087 PSD3 ENOPH1 CAPZB LANCL1 KLHDC3 D4S234E HK1 PDZRN4 TMOD2 RASGRF1 GABRA1 PROX1 CDH8 STMN3 GLO1 PCBP1 NDUFB7 SULT4A1 ACLY BRICD5 PHF11 PITHD1 SYN2 COL11A1 TMEM59L USMG5 UBE2M NDN CALM3 NPTXR NAP1L5 GDI1 SLC12A5 PFN1 FAM127A UBQLN2 FIGN MTCH1 GAPDH CERS6 FAM219A ATRN ADARB2 SRP14 NCAM2 SERPINI1 CRKL CNTN1 LYSMD2 NDUFA11 YWHAZ PTPRN2 PTPRM IGSF21 CCDC124 PIN1 RAB3C ARHGAP35 BCAT1 TMEM130 CAPZA2 SYT13 MAOB PPP2CB PIP5K1B HAPLN4 MTRNR2L12 DLC1 CRIM1 TUBB2B RABAC1 TERF2IP TGOLN2 SUMO3 RPS15 ATP2B2 MTRNR2L6 MZT1 TOMM70A OCIAD1 KLC1 NDUFA5 SHISA6 PNMA2 PEBP1 ZNF319 CLTC DPYSL2 SLC24A3 SEZ6L SEPW1 RHBDD2 UQCRB MED31 DCLK1 RTN4 ARFGAP2 ADAMTS6 UBE2E3 RNF208 SLC7A1 MAP1LC3A MAPK1 IDS AES SELT AP2B1 RAB7A TMEM132D SOX11 ITM2B RPS28 MAP1A SV2C ID2 MAP2K2 SPOCK2 NCDN SPARC NDRG4 GABRA5 B3GNT1 TPPP FAM163B SRP9 CALM1 ITGB5 TEX40 ATP5A1 PPP2R1A FTH1 SYNGR3 VAPB PRKACB CADM3 PIK3R1 MDH2 PGAM1 CCDC85B OPRM1 SEZ6L2 ATP5B ENO1 OR6D1P PPP1CB NR2F2 APP SCG2 MTHFS GRIN1 GLRA2 PPM1A SPOCK3 PTPRN NGFRAP1 SPRYD3 PNMA1 SYNGR1 S100A6 CHL1 CTNND2 ADAM23 UBE2N TUBB4B SNX3 CKB HTR2C PPP3CB CISD1 CNR1 LYNX1 ARF1 MGST3 APLP1 CPLX2 DCTN1 ZFAND5 SLC9A6 OAZ1 BSN HCN2 ISG15 ITFG1 SPTBN1 NDUFB1 SDCBP HPRT1 NRIP3 PALD1 ATP1A3 DNAJA1 SSBP3 FKBP1A SLC38A1 TSPYL4 PDLIM5 NDUFB2 RPL26 LMBRD2 NFE2L1 SLC7A5 HRH3 ADD2 DNAJC6 MAP2K4 PPP2R2C CAMK2G MAP4 TBCA CLSTN1 LRP1B DNAJC5 ATP6V1G2 TUBB B2M NGRN ARF5 RP11-219A15.1 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 SYT1 MT-CO2 ATP1B1 MT-CYB MT-CO1 CALM1 EDIL3 MT-ND3 ACTG1 SNAP25 MT-ATP6 ALCAM GNAQ ELAVL2 CADM2 ARL4C PHYHIPL DPP6 TMEM130 TSPYL1 MT-ND2 GABRA1 SYTL2 ANK1 BASP1 AES QKI SPOCK1 SKP1 MAP1LC3A VAMP2 HSP90AB1 GPM6A SYT11 ATP6V0B CALM2 THSD7A NAPB SLC6A1 NDFIP1 GAD1 IDS MAP1B PCDHGA6 CHMP5 ALDOC KLHDC3 PGM2L1 RELN MTRNR2L12 SCAND1 UBE2V2 RPL13A CNTN1 UBL5 GDI1 CHRNA2 MARCKS STMN2 SERF2 RGS12 ACTB FXYD6 COL11A1 PRKAR1B CDK5R1 MAPK1 ZFAND5 NR2F2 TMEM65 ARL6IP1 LCNL1 TMEM59L PROX1 TMEM200C PCBP1 PPP2R1A RTN4 GRIN2A RPL18A ERBB4 NBL1 ATP1A3 CLTC ATP2B2 KCNC2 ACLY SCAMP5 SERINC1 TMEM230 EIF4A2 MTRNR2L1 EIF1AX CBX6 RPS28 RTN1 PRKACB GAPDH DNER HSP90AA1 NDRG2 SARAF GRIN1 LGI3 FAT3 NAP1L5 DCLK1 MTPN KIF21A ZNF385D TBC1D15 FAM219A RBM20 ASAP1 DNM3 AGT ATP5F1 TOMM7 PSMD8 TUSC2 GTF2B NGB SNCB MAGED1 INPP5F RPL32 MYEOV2 TCEAL3 TMOD2 RPL3 DYNLRB1 ACOT7 SLC9A1 NAPA JAKMIP1 MT-ND4L NREP MT-ND5 RPL38 NPTN TMEM35 SIRPA LRP1B VIP PGRMC1 PPTC7 MYL6B TBCB DNAJB6 RAB6B DGUOK NCOA4 ATP5I RPL35 PFN2 TMSB10 APLP2 CDKN2D NDUFB8 PPP3R1 MZT2B TUBA1B COL12A1 HTRA1 DNAJC6 COX7A2 PALD1 ENOPH1 GHITM UQCRH CAPZB ASIC4 SNAP91 TCEAL7 ACTR10 UBC SPOCK2 CD99L2 BIRC3 UBA52 ATP6V1G1 PTMA TMA7 HRH3 CLPTM1 ATP6V1B2 CDK5R2 SNN SYNJ1 NDRG4 ARF3 PPP2CA CMPK1 SCN1A TUBB2B TPRG1L PSMD2 CFH TUBB4B SMIM13 STMN1 VEGFA SALL1 GOT1 PTPRN CSRP1 PTPRN2 OXR1 CAMK2D NGFRAP1 PSMD12 INA COX4I1 ITGA6 MTRNR2L8 TENM3 SRP9 STMND1 PTPRM TCEAL2 SLC38A1 SYT13 SMS RPL7 CREG2 PRDX5 SAMM50 PNMAL1 RBX1 SRD5A1 CDR2L DYNLL1 ITM2C TSPYL4 GUCY1B3 LMBRD2 SYNPR SULT4A1 RPL13 PRNP MRPL11 ANXA7 ITFG1 GNB1 SNCG CAMK2N2 FAIM2 UQCRC1 CKB GPR158 PNMAL2 VSTM2L MARCKSL1 NEFM NUAK1 COX6B1 FGF12 OLFM2 TERF2IP FKBP1A STXBP1 NCALD RPS3A WASF1 BEX4 FAM131B CCDC152 SCG2 FAM134A UQCR10 HSPA8 ARL1 HMP19 TRMT112 FSCN1 VDAC1 TPI1 GLRA2 LZTS1 SRP14 NDFIP2 PPP1CB CNTNAP5 RPS6 NAP1L2 ATP5H MAPK8IP2 NRF1 PNMA1 SLIT1 BRICD5 KIF1A RPL36A STX1A RAN CDH13 VAMP1 NHP2 UBE2F D4S234E CADM3 CX3CL1 HSPA4 ATP5G2 RNF11 C8ORF4 PRKAR1A NDUFA11 CPE RTN3 PCSK1N CERS6 HIGD1A PPP2CB COMMD6 CSDE1 ATP6AP2 SYPL1 ARPP19 STMN3 SLC25A6 COX6A1 RPL6 MGST3 VSTM2A RPL37A OAZ1 NRSN2 OLA1 ROBO2 PPP2R2C HHATL ANAPC11 ITM2B IGF1 GSKIP HS6ST3 RPL15 RAB6A C1ORF233 OLFM1 LANCL1 CTNND2 DNAJA1 NDUFA1 PLCB1 EID1 KLC1 PLD3 CPLX1 RAB4A PJA2 RPL8 ADAM33 RNF208 MYL12B PREPL ARHGAP24 EFR3A ADAMTS1 MAPRE2 C16ORF13 SUSD4 CFL1 KIT ATP9A SNX10 YWHAH PFN1 RP11-20I23.1 TUBB3 RPL17 ATP6V0C OR6D1P ARF5 NSF RPL26L1 RPL17-C18ORF32 ATP6V1G2 RPL21 AC244489.1 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L1 MTRNR2L12 MT-CO2 MT-ND3 CCK MT-CYB MT-ND2 MT-ND4 VIP SYT1 PLP1 MT-ATP6 ADARB2 RPS15 MTRNR2L6 ATP2B2 MTATP6P1 CALM2 SYNPR PTMA ARL4C SCD5 PLCB1 CLSTN1 RPS5 SLC6A1 TOMM20 CNTN1 SCG2 ATP1A1 CADM2 ATP6V1A RPL21 TMEM130 ATP5I PET100 MYEOV2 RPS3A MT-ND1 LAMA3 MARCKS RGS12 UBQLN2 TERF2IP PRNP NR1I3 MPC2 CTGF ITM2C TPI1 NRIP3 CAMKK2 PKM RPL38 TRIM59 GABRA1 PDE3A COX6A1 ARPC5L DNER KIF21A NDUFS5 CA2 EBF4 PCDH8 CADM3 PPP1CB RP11-111M22.2 SOX10 RAB40B THY1 MFN2 ZNF536 TUBB2A SLC39A10 ARL6IP1 SLC12A5 WASF1 STXBP1 HS6ST3 PLD5 UQCRH SOD1 HMP19 DNAJC5 SLIT1 PAK1 ARL6IP5 DPYSL2 GHITM SERPINE2 NPAS3 CAMK2N2 NDUFA1 DBNDD1 EIF1AX BCAS2 SULF2 ITM2B CDH8 SERINC1 RAPGEF5 OXR1 UBA52 VAMP2 MRPL52 HSP90AA1 NDUFA12 DYNLL1 RPL17 EDIL3 QDPR RNF11 HAPLN4 RTN4 UBB CRIM1 NIPA1 TUBA1A APLP1 NPTXR SLC1A3 COL12A1 SCN1A SLC25A6 LPPR4 PGD ELFN1 PFDN1 PARM1 CA11 LRRC39 KLC1 TMEM160 CSRP1 TENM3 FGF12 RPL26L1 CPE ATP6AP1 CNP CNR1 RTN3 MIF SRP14 SYNGR1 SCD ENO2 SLC1A2 LMBRD2 GFRA2 PPP2R2B SKAP2 BTBD11 ATP6V1C1 HIF3A SNAP91 RAD23B RAB11A IGF1 ZBTB20 KLHL5 PROX1 SNAP25 ERBB4 RCAN2 MORF4L1 MTRNR2L8 TMEM120A KCNC3 RAB3C SSBP3 FTH1 SPARCL1 MT-ND4L JUND RPL23A KCNAB2 ELAVL2 SNRPE TLE4 PTCHD4 TPT1 TKT IQSEC1 PPP2R2C OPRM1 GNAQ CLDND1 TRIM37 MRAP2 BIRC5 ATP9A MRAS RAB7A HINT1 RPL10A ALCAM RAB3B SYTL2 ZNF385D PIN1 PCDHGA6 RPL13A GTF2H2C_2 PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 ATP1B1 MTRNR2L1 MT-ND4 MT-ND1 MT-CO1 HSP90AA1 RGS12 MT-ND2 MT-CO2 ATP1A3 HNRNPA1P40 SPOCK2 SSBP3 CALM2 GPR68 VAT1L THSD7A GRIN2A EFR3A THY1 CDH13 CCT5 TSPYL4 TGOLN2 MT-ATP6 APLP1 CLTA CADM2 PRKACB SYNPR FXYD6 RPL13A ARL6IP1 PROX1 CAMK2G SYTL2 RAB3B DNAJC21 OR6D1P CDC37 MTRNR2L6 SCOC CX3CL1 NRCAM HTR2A PGRMC1 NDRG3 BSG RPS3A ACTG1 MT-ND3 RPS4X APLP2 PSMB7 SLC12A5 RP11-111M22.2 MT-CYB C19ORF53 SMIM13 TSPYL1 MAP7D1 HSP90AB1 COX7C HMP19 DKK3 MAOB KIAA1024 PIK3R1 PRKCE VAMP1 OCIAD1 EIF1AX RPL37A TPT1 SUB1 PEG10 FAM43A APP SLC24A2 SLC38A1 PPP2CB RAB7A RASGRF2 CYB5R3 GAPDH PGM2L1 RPL38 ZBTB18 GABRA1 ATP5I EPHA6 DPF3 ELMO1 ERBB4 PRKCB CAMK2D TMSB4X PEA15 TMX4 PPP2CA CDC42SE2 EIF1B RPL39 PSAP NDFIP1 ARL4C SSTR2 NCAM2 CYFIP2 CXXC4 LANCL1 CALM3 MAP1B TPD52 BAALC ZFAND5 GRIN1 ATP6AP1 RPL13 HINT1 SYT1 ITM2B CFL1 GPM6A EDIL3 WARS PTGDS FABP5 CD63 UCHL1 CABP1 HSPE1 NEFM PREPL ARL8B SYT10 NDUFB2 LCNL1 GRIP2 VAMP2 CTSD PPDPF MT-ND5 PPP2R1A FASN S100B ALDH5A1 INPP5F ACTB MAF KIFAP3 SEZ6 HOMER1 DYNLRB1 PPM1A NAP1L3 KLC1 BIRC5 MTRNR2L12 DNAJC6 RPL18A PPIA RNASEK-C17ORF49 RPL26 PSMB3 AC244489.1 IDS BLOC1S1 MBOAT7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 SYT1 SNAP25 SYTL2 CALM2 TAC1 ZNF385D MT-CO3 SYNPR MT-CO1 RTN3 GRIN1 DNER BASP1 RAB3C NPTN MAPK1 CALM1 PJA2 TMX4 SERPINI1 ATP9A CHN1 YWHAG GPM6A ARF3 PITHD1 AP2M1 ALDOC GUCY1B3 VDAC1 MGST3 RPL39 MT-CO2 ATP2B2 PHYHIPL KIT PREPL ALCAM GNAQ SLC22A17 OXR1 ARL6IP5 GDI1 PCDHA10 PCDHA4 OLFM1 CHMP4B CALM3 RNF11 BCKDHB PNMAL1 COX6C COL21A1 THY1 CRYZ FAIM2 ATP6V0B STX1B SPOCK1 CDS1 FKBP1A KIF21A PLD3 BEX1 RPL36A NDUFB1 RPS6 PTPRS THSD7A DYNC1I1 YWHAH MAPRE3 SLC12A5 TSPAN7 ALDH5A1 TXLNB PDP1 UBB PNMAL2 CHGB PHYHIP NAPA YWHAB PSD3 ARL4C PPP2R2B PRNP NPAS3 VAMP2 ATP1A1 MT-ND5 MTPN PAK1 PRKAR1B BCL6 NECAB1 SERINC3 CPE DCTN1 DYNLL1 GAD2 CLU NDFIP1 HSPBP1 MAGED2 VAT1L MT-CYB MAP7D1 GAPDH ATP1A3 RPS27A HSPA4 ENO1 TERF2IP HSPB3 SYT5 OXCT1 ISCA1 PARM1 EIF4A2 UBA52 RANBP1 NUDT21 LGI2 TGOLN2 TMEM59L ARHGAP35 C12ORF57 SCOC IGF1 INA NAP1L3 KCNAB2 MAP1B STMN3 PEG10 HPRT1 RTN4 RAB11A TMEM130 RPS4X GABRA1 TMEM132C DYNLL2 RAB3IP PSAP PKM GRIK1 CKB MTCH1 BEND4 STXBP1 RAB4A CRKL QKI LBH CBX6 TSPYL1 PPA1 KCNF1 MT3 HS6ST3 QDPR PRDX3 EIF4G2 CHRNA2 IDH3A ADARB2 FAM127A UQCRB DLX1 PVRL1 SEZ6L CLSTN1 FBXW11 NRCAM SV2B TUBB4A FAM84A GNG3 GAP43 RAB3A TKT TUBA1B JUND PROX1 RPS5 ASIC4 MT-ND4 CDK17 EGFL7 TCEAL3 SPCS2 ARL6IP1 CCDC25 PPIA CTSD LMO3 VSTM2A PDE1C NR2F2 NUDT4 RP11-111M22.2 WBP2 ELMO1 VSNL1 MARCKSL1 GSTP1 ARF1 BCAT1 PGRMC1 CLTC HMP19 GABARAP FTH1 ALDOA SERF2 IDS CYB5R3 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 RAB3B MT-ND3 MT-CO2 MTRNR2L1 RGS12 MT-CO1 SEZ6 ARL6IP1 CADM2 RP11-111M22.2 APP ATP2A2 TSPAN7 EIF1B MT-ATP6 RTN3 OCIAD1 PRKCE TMEM130 FXYD6 SLC6A1 PROX1 MT-CYB SYNPR MARCKSL1 RAB3C MTRNR2L6 ERH PPP2R1A OXR1 VSNL1 TSPYL1 CA9 NCALD EPB41L3 PNMA1 BCL6 PCDH8 PEX5L RPL37A LIMK1 OLFM2 DCLK1 GDA MT-ND1 MAP1B CALM2 HSP90AA1 MTATP6P1 CYFIP2 MT-ND4 RP11-219A15.1 THSD7A COA3 ATP5A1 FGF2 SOX2 PJA2 CDS1 RTN4 EDIL3 PLCB1 PKM YWHAG ATP1B1 LCNL1 CDH13 TOMM70A SERINC1 KIF1A UCHL1 TERF2IP TIMP2 CTNNB1 OPCML AKAP12 CALM1 ALDOC VWA5A GHITM ZFAND5 GRIN2A SYT11 CISD1 RNF152 ATP2B2 DPP6 GSTP1 PAM NFIA RPS2 CLTC FTL QKI REEP2 RPL35 SCN1A ZBTB18 ALDH5A1 ARL4C GRB14 ZBTB20 PCDHGA5 POLR2J COA4 RFC4 KCNAB1 PSD3 RBX1 SEMA4G PPP2R4 BEX2 C12ORF49 HAPLN4 NPAS3 MT-ND2 UBA1 PCDHA9 RPL31 TCN2 DLX1 FAT3 MYO16 MAF SYT1 ATP5H SEZ6L NGFRAP1 DRAP1 UBA52 NAPB LRP4 YWHAH PNMA2 DYNLT3 STMN1 PPP2CB MTRNR2L12 PREPL ATP6V1A RTN1 PRKACB ANXA7 HMP19 PTPRN FIGN ENC1 CYCS PDZD11 APLP2 CREG2 NDUFB11 HIGD1A BTBD10 ERBB4 PGM2L1 ATP5O TCEAL2 YWHAB LANCL1 EIF4A2 FKBP8 SLC1A2 KLC1 ITM2B EID1 CD59 DNER RPS6 SSBP3 HS6ST3 SCN7A PDE1C GAD1 MAPK1 DIRAS3 AES OPRM1 TCEB2 IDS ALDOA BIRC5 CFH ZNF385D SYTL2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RELN SYT1 ZNF385D MT-CO1 SNAP25 MT-CO3 MT-CO2 CXCL14 RTN1 ATP6V1B2 SPOCK1 CCK GDI1 ARL4C ATP1B1 CNR1 RPL21 MT-ND1 COX4I1 GAD1 FXYD6 SLC9A6 ARL6IP1 DNER RPL38 SLC6A1 CAMK2D PNMA2 PPP3CA FAIM2 NDRG4 DNAJC21 TMEM200C PTGES3 TSC22D1 PTPRZ1 VPS35 SLC7A8 ATP6V1A PLCB1 NSDHL REPS2 WBSCR17 HCN1 NPTXR ELAVL2 CPLX2 PPA1 RTN4 HMP19 PTPRN UBE2QL1 BEX1 AK5 LPPR4 ARL8A EIF4A2 PREPL CRH TP53I11 PLS3 SPOCK2 ARFGAP2 MTND1P23 DKK3 PRIM1 MRFAP1 TKT CALM2 FAM3C SYNGR1 CDK5R1 WASF1 CERS6 WIF1 EGFR CREB5 HAPLN4 PDE1A ISCA1 EID1 ETS2 EYA1 YWHAB PARM1 DUSP1 ERBB4 SLC1A2 CTDSP1 RABAC1 MT-CYB NDUFB8 ATP6V1G1 POMP CALM3 KCNC2 TOMM20 NAP1L5 CNTN1 NMUR1 ACTB REEP2 BCL6 SUB1 RAB3IP SOX2 SLITRK1 AZIN1 NFIA MTRNR2L12 BAI2 SLC38A1 PRDX1 ATP6AP2 RPS26 TRIB2 GPR158 SARAF SEPW1 HNRNPH2 CYB5R3 HCN2 SPRN SPRYD3 C1ORF115 PHKG1 ARL8B STXBP1 PGM2L1 CYCS SYT5 SCOC CADM3 IDS PRNP CDC37 GRIN2A SKP1 TRPT1 USMG5 EXTL2 GPM6A COX7A1 BTBD10 KRAS UBB C14ORF2 BEX2 TSPYL1 ARF1 MTCH1 NCAM2 OAT PKM PHYHIP DDR2 SYT17 GPR133 VDAC3 ARF3 FSCN1 THY1 COX7C SYT4 ENPP2 MORF4L2 PFN2 TLN2 KIF1A NR1I3 RHOB DMKN DNAJC5 GJA1 HSP90AB1 EPHA6 EFHD2 SLC22A17 APLP1 RPS27A GABARAPL1 COX14 CALM1 CTNNB1 RPL11 LSM4 DLL3 MTRNR2L8 PTPRS ATP2A2 UBA52 DPYSL2 TCEB2 NAA38 UBL5 CDKN2D GRIN1 GDE1 SCG2 APP SYT13 CTBP1 CYFIP2 MAP1A NPAS3 SLC25A22 PNMAL1 TMEM35 ADARB2 B3GNT1 EIF1B RPL41 UBE2M PAFAH1B2 RPL31 CAMK2N2 IQCK EPHB6 ROBO2 TBR1 ATP2B2 CFL1 SYT11 MT-ND2 AP1S2 SEMA4G RPL26 PCBP1 CDH13 IGSF21 CBX6 GUCY1A3 GPX4 JUN PCDHA4 EIF1 MAP2K4 RAB2A RCAN2 SNRPN CABP1 CHCHD2 CDS1 WSB2 MAP4 C2ORF74 ARPP19 ATP2B4 MT-ND3 RPL32 MED10 CPE MRPS21 SRD5A1 RTN4R DNAJC6 CDK5R2 CLIP3 NECAB1 TUBA1B EGFL7 CHN1 GABRA1 REEP5 MAP7D1 NRCAM IFI6 C11ORF31 EFR3A TMEM59L TMEM151A SERPINI1 ATP5G2 DPP6 ITFG1 GOT1 KCNA2 CHL1 NAP1L3 ALK PTPRN2 VDAC2 NXPH1 CACNB1 PLCXD3 PPM1A HGFAC PRPS1 CFH ATP6V0C RP11-20I23.1 FTH1 NGRN RPL18A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-ND1 MT-CO3 RAB3B MT-ND2 MT-ATP6 MT-ND5 CALM1 MT-ND4 MT-CYB ARL4C MTRNR2L12 TSC22D1 VIP RPL37A MT-ND3 TMSB4X MTRNR2L1 HMP19 DPYSL2 PAFAH1B2 NDRG4 HSP90AA1 ERBB4 MTATP6P1 PKM BEX1 PNMA2 ARL8A UQCRB RPS5 GNB1 RTN4 FTH1 RPL31 CAMK4 RPL35 GNG2 MTRNR2L8 KLC1 DCLK1 DNAJC6 WBSCR17 YIPF3 ATP1A1 EIF1B CLSTN1 SELT UCHL1 PREPL ATP5J2 NELL2 SYT1 SEPW1 RPL13 MAP1B CCK PTPRN FTL SYT17 STMN3 KIF3C GAD1 PRNP SERP2 PROX1 C20ORF24 PCP4 VWA5A TSPYL1 FBXL21 RPL38 HS6ST3 SYNGR3 SERINC1 EFR3A TGOLN2 CALM3 SSTR2 KCTD12 FGF12 PCDH8 GABRA1 VDAC3 KLHDC3 PPP1CB RAB3IP CADM2 RAB6A PAK1 MARCKS ADD2 ATP5O PRKACB RNF11 PLCB1 PJA2 UQCRQ RAB31 TCEAL7 LL0XNC01-16G2.1 EIF1 SYT11 MRFAP1 HPRT1 SULF2 GNAQ RPL41 PNMAL1 SERINC3 MTND1P23 TMX4 DYNLRB1 NGRN CNR1 COX7A1 ATP6V1B2 SH3BGRL2 SCG2 ACTG1 SLC25A6 CEND1 WBP11 ADARB2 NAP1L5 SOD1 NDUFB8 PSAP DLX1 PARM1 THY1 SPOCK1 ATP6V1A CSDE1 KIF1A PHYHIP SOX2 UBA52 CBX6 CTBP1 RHEB SMS FBXL16 SCAMP5 UHMK1 INPP5F WDR47 TCEAL2 BLOC1S1 UBE2N YWHAB RPL15 KLHL5 BEX2 RPL13A CPE CDK5R1 SHC4 PEA15 RPL10A PRKAR1A CCDC85B TSPAN7 NRCAM PLD5 HK1 MRAS SEZ6L SYNPR CREG2 ELAVL4 SCN2B DNAJA1 CHRNA2 ZNF804A OAT NPTXR EIF1AX C1D MTRNR2L6 GABARAP RPL18A AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CCK SNAP25 CALM1 MAP1B MT-CO2 CALM2 COX7C CXCL14 RPL41 MT-CO3 SYTL2 ALCAM ACTB NDUFS5 CNR1 PPIA ATP1B1 TMSB10 RPL23A RPL15 GRIN2A FXYD6 MT-ND2 RPL13A TPT1 ATP1A3 RPS26 TUBA1B RGS12 ATP6AP2 CADM2 BEX2 RPL31 HSP90AB1 RPS27A RPL38 CPE MT-ATP6 MT-CYB TOMM7 RPS28 RPL3 ALDOC RPL13 CRH VAMP2 RPL17-C18ORF32 SNCG DPP6 PRKAR1A APBB1 RAB3B SLC38A1 ATP6V1F RPS4X JUND ATOX1 PRKCE TXN PPP2CB PTPRN2 FIGN IQSEC1 NMNAT2 ARF3 PGAM1 YWHAB EIF4G2 SEZ6L2 EPB41L3 GPM6A USMG5 STXBP1 DCLK1 GAPDH SPARCL1 KIF5A ITM2B SLC24A2 RPS15 GDI1 DNM3 SYT1 RP11-111M22.2 SKP1 RHBDD2 VIP EIF1B ELAVL4 SPOCK3 RPL26 RELL1 MT-ND1 TMSB4X NBL1 CNTNAP5 ATP6V0E2 EDIL3 PPP3CB ATP5I FTH1 PGK1 ATP5E NDUFV1 PRNP MTATP6P1 TSPAN7 PKM ATP5A1 DNER COX5A MGST3 CTSD TMA7 SELM MAPRE3 ARL4C CD63 PCMT1 COX4I1 ISCU POMP CTC-575D19.1 LIN7B RTN3 NDUFB11 CLSTN2 CCDC141 ZNF385D NR1I3 KLC1 PEX5L FBXL15 OSGEPL1 NDUFC1 MAF KIAA1211 RPL6 PTPRN RAB6B PDP1 PPP2R4 KIF7 HPCA SCN1A UQCRH TUBB2A PPP2R2C HSPA8 YWHAH SYNPR ATP6V0B TOMM70A C9ORF16 ATP5H ELAVL2 COX6C NPAS3 ARL6IP1 PSMA7 PSAP AURKAIP1 UBC TMEM200C GAD2 H2AFZ MZT2B CA11 NRCAM THYN1 PNMA2 ACP1 PCBP1 KIF1A AGT ROBO2 ACAT2 NDUFB8 MAP1LC3A IGF1 SHISA6 NSF MTND1P23 PPP2R1A PRKACB FAM43A NAP1L5 IDI1 RAB6A STMN2 WBSCR17 SNCA SLC12A5 FAM174A MORF4L2 ATP6V0C NDUFA5 KIF3C FSCN1 MANBAL TMEM35 CALM3 PSD3 CNRIP1 CRYAB NCEH1 NRAS UBE2QL1 FIBP RAB3IP CKB HMGCS1 COPRS YWHAZ ARL8A PNMAL1 SHISA8 DNAJC4 MTRNR2L12 COX6A1 CYCS CREG2 OXR1 GPNMB NDUFA4 LGI3 AP1S2 CTNNB1 ATRN MDH1 LAMTOR1 FXYD7 PRUNE2 DPF3 THSD7A MYL6B APP TUBA1A OCIAD1 PTMA TUBB4A CYFIP2 BAG4 PRKAR1B OPCML CAPZA2 SP8 ARHGAP35 CPLX2 PRPS1 SERINC1 COX5B DYNLRB1 GAD1 RPL8 ENC1 GSG1L FABP3 ARL4D THY1 C19ORF43 TMEM258 RTN4 POLR3H BEX1 SLC25A4 RTN1 PRDM16 PREPL NDUFAF3 GRIN1 RPS12 EGFR CHL1 SEPW1 CLTC FBXL16 MAP1LC3B CLSTN1 ATP1A1 TEX2 ZNF536 RCAN2 WASF1 VDAC1 CAP2 ATP6V1A VPS35 LHFPL3 ARL6IP5 EBF4 GUK1 TMEM14A PRDX2 ERBB4 NCAM2 SCN1B FABP5 CCDC184 ATP9A GCHFR SYT13 RNF11 MRPL51 C19ORF10 SEPT4 SQLE PGRMC1 LMO2 GNG2 KIT NPTN YAF2 RRAD GTF3A FSTL5 BIRC3 LMO3 LINC00116 MYO16 NGEF ATP5G1 SH3BGRL2 DNAJC6 CLIP3 RP11-20I23.1 ENO2 MT-ND3 CPLX1 TMX4 RPL12 ACTR10 CHRNA2 CDH13 ATP5B ASPM NPR3 INA CERS6 COX7A2 PEBP1 SYNJ1 ATP5G2 ELOVL7 YJEFN3 SERP2 RASGRF1 PRDX1 BHLHE40 SLC9A1 CEND1 BEX5 RSL24D1 TKT DYNLL1 SLC9A9 TPI1 PPM1A PNKD PPP3CA C7ORF50 ATP6V1B2 NDRG4 AES IPCEF1 RAB5C OLFM1 CLDN10 RPS6 NDUFS6 CFL1 ISCA1 BEX4 LPPR4 LRRC39 DIRAS1 SNX3 B3GALT2 MYL12B MAGEL2 ATP2A2 C11ORF31 NELL2 MT-ND4 CAPZB SLC22A17 SNX10 STMN1 PPP2R2B RPL7 SRP14 NAT8L ATP5O PIK3R1 SLC17A7 RPL35 TM2D3 MRFAP1 ARPP19 FAIM2 RPL11 RHOA GMFB CCDC168 PPDPF PLD3 UBA1 DPYSL2 NPTXR RPL21 INSIG1 ACTG1 DNAJB6 EIF4A2 SERF2 PTGES3 ZBTB18 REEP2 COPS8 PSMB3 MTRNR2L6 NGRN RPL36A ALDOA RPL18A ATP6V1G2 TUBB PCDHA4 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 ATP1B1 SYT1 SNAP25 CXCL14 THSD7A HSP90AA1 PNMA2 RPL31 MT-CYB ITM2B CALM2 RTN4 PPP2CB SLC6A1 PPP3CB PRKACB MT-CO3 RTN1 PPP3CA SCG2 HRH3 MT-ND4 ATP2A2 RPL6 RAB6B GABARAPL2 RGS12 RPS4X MT-ND1 RPL36A TSPAN7 UQCRH FGF12 PGAM1 RPS27A PRDX2 FXYD6 RAB3B SYTL2 UBA1 ARF1 PTGDS RNF11 RAN PLD3 ROBO2 SLC12A5 ATP5B LDHB NELL1 OXR1 CNTN1 PREPL COX6A1 COX8A ENO2 EFR3A SYNPR KCNA2 DPYSL2 VDAC2 CADM2 NEFH RPL37A CLU ATP1A3 RPL15 MT-ND3 SNRPN TCEB2 TM2D3 TENM3 IGSF21 RHBDD2 SSTR2 RPL41 TSPYL1 RPL38 CYB5R3 ATP5G2 ARL4C SERINC1 SPOCK2 TMEM160 CALM3 YWHAH PEBP1 CCK RPL11 NCEH1 RPL23A RTN3 ZNF385D EDIL3 BTBD10 C12ORF57 ALDOC NR2F2 COX7A2 RPL32 NDUFS5 UQCRB ATP6V0D1 MRPS21 HMGCS1 COPE TOMM20 DCTN3 RPS3A INPP5F VDAC3 NDUFB11 SLC6A17 GPR158 HSPBP1 SLC9A6 SPRYD3 CD63 SCAMP5 NFIA GOT2 GLO1 COX6C FBXO2 YWHAG GNG12 GAPDH CALM1 DCTN1 LYNX1 VAMP2 ATP6V0C STMN1 BSCL2 NRF1 RPL12 PFN2 NEK7 RPL17 SLC39A10 ATP5I PLS3 SEZ6L2 ERBB4 PPP2R1A MAP1A ARF5 HMP19 ATP5C1 RPH3A NCKAP5 TAGLN3 PDP1 UQCRC2 RFK C19ORF53 MTRNR2L1 PRNP ATP5J2 TEX2 VSTM2A DSTN RP11-111M22.2 HBQ1 RPL39 LCNL1 SFRP4 PIN1 CAPZA2 TBCB LYSMD2 NDUFB5 PTN ISCA1 COX6B1 EIF1 MORF4L1 RAB3A PRIM1 MT-CO2 TGOLN2 SCD5 UCHL1 EEF1A2 FAIM2 CLIP3 PSAP APLP1 SNAP91 HPRT1 SDCBP ITM2C IDS STXBP1 WARS SSBP3 BASP1 NOS2 OPA1 NPY RPL26 HSPA8 CD99L2 NDUFB1 NFE2L1 MAP2K1 REEP5 KCNAB2 EPS15 AP1S2 AES KIFAP3 SH3GL2 TUBB4A SEZ6 CORO2B CISD1 GLUL MLLT11 HSP90AB1 DKK3 NTNG1 CNP CITED2 SPARCL1 TSC22D1 HEPACAM TAC3 SFRP1 NDUFAB1 GNAQ CKB STX1A OLFM1 PPP1R7 PGM2L1 TMEM132D PNMAL1 APOD CFL2 TCEAL3 EIF1AX ETS1 TPI1 PJA2 RPL13A CAB39 ELAVL2 DYNLRB1 PAQR9 ZBTB18 ADSS SEPW1 APP ATP6V1C1 DYNLL1 RAB1A CEND1 C19ORF43 MT-ND2 CTSD ADAM23 NDUFA12 GRINA EIF4A2 KLC1 ATP5J CLPTM1 UBE2D2 SCAND1 SYNGR1 THY1 MAP1B NAP1L2 COX7C NGEF RPL8 SUMO2 NAP1L5 NRCAM ARF3 NRAS MTUS1 TMEM155 NDUFC2 HSPE1 ARL6IP5 TERF2IP ABHD14A CLSTN1 NME1 HDDC2 GPM6A YJEFN3 ATP5A1 BAD CLDND1 MAP2K4 SLC7A1 TMEM120A HEPN1 SYT10 PCDH8 DNAJB9 NDUFB8 ACTR1A STX1B CREG2 RP11-20I23.1 POLR3H CMAS ARL6IP1 SCN3B UBE2N SOD1 MARCKS AC244489.1 RNASEK-C17ORF49 CFH MTRNR2L6 B2M ALDOA GHITM RP11-219A15.1 PET100 RPL18A RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 MT-ND3 MT-ND2 MT-ND4 MT-ATP6 MT-CO3 MT-ND1 MT-CYB MT-CO2 SNAP25 RELN NAP1L3 CALM1 MT-ND5 ATP1B1 RAB3C MTRNR2L12 MT-ND4L CHL1 CNTN1 MTATP6P1 ATP2B4 EIF4A2 ATP1A3 RTN1 DNAJC21 SYTL2 SERINC3 ACTB EYA4 SPOCK3 KIT RTN4 PGM2L1 GRIN2A PTPRZ1 ATP2A2 FAM174A UBQLN2 HSPE1 DPYSL2 GPM6A BEX2 PPP3CA PSD3 PPIA GDI1 PHYHIPL MAOB SYNPR PREPL SARAF PTMA MAP1B GAD2 SERINC1 TMEM14A NRIP3 CERS6 ATP1A1 SOX9 ADAMTS5 PMEPA1 LPPR4 YWHAB GABARAPL2 MAPK1 RAB1A ELMO1 PTPRM MTRNR2L8 RPL37A GDA REPS2 RTN3 DKK3 WBP2 TIMP2 VSTM2A DNAJB6 SCN1A RP11-111M22.2 CAB39 FAM3C NDUFS5 TENM1 RAB11A ARF3 DNAJA1 MAP4 RPS28 PRKACB ATP6V1B2 NDRG4 PLCB1 TPT1 TMEM130 ATP6V1E1 EPHA6 CPNE8 RPL3 SP8 SLC6A1 GRIK1 GJD2 ANXA7 MFSD6 PKM VAMP2 ATRN PPP2CA LMO4 OXR1 FXYD6 LANCL1 NDUFB2 SPOCK1 DPP6 APLP2 NPTN QKI TSPAN7 SKP1 ATP13A4 CPE PTPRT STMN4 CHMP4B TUBB2A GNAQ ARPP19 GABRA1 MPPED1 MBOAT7 UHMK1 SCD5 RANBP1 ACTR10 NAPB PVRL1 CDKN2D PNP PNMAL1 DNAJB9 EIF1AX RNF11 SCML2 OR6D1P PRNP CMAHP SCG2 TMSB10 HCN1 CTNNB1 PPP2R1A PNKD ATP2B2 PNMA2 AC244489.1 PPP3CB GHITM TUBA1B MPC2 RASGRF1 SNAP91 GUCY1A3 CLEC2L ZNF536 COPRS FGF12 HSP90AB1 EDIL3 LMBRD2 ACTG1 NUAK1 RRAGA SLC9A6 DDR2 SULT4A1 BEX1 MTRNR2L1 SPHKAP DNER ARL6IP1 ERBB4 CLTC ELAVL2 NXPH2 NACC2 APP CDS1 FSTL5 PITHD1 TMOD2 NMNAT2 CYFIP2 BSCL2 NSF PCDHA9 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RP11-111M22.2 RTN3 SEZ6L SLC9A6 SLC6A1 CAMK2G VIP PREPL MT-CO2 DLX1 MAP1A ATP1B1 HMP19 SYT1 LRRC39 RPL37A KCNAB1 RPL3 IGFBP5 RPL17-C18ORF32 PRKAR1A PID1 NDFIP1 ATP2B2 ASIC4 HDAC1 RBX1 SULT4A1 RPL13 ARL8B LINC00116 SCN1A C19ORF43 RPL23A ACTG1 ANXA7 KIT PTPRS EIF4A2 MT2A SRP54-AS1 PCDHA4 YIPF3 COQ10B RAB6B SRP9 GAD1 GPX1 NAT8L LCNL1 MAPRE2 GRIK1 OR6D1P RHOB MAPK1 RGS4 NAPB NDRG4 ATP1B2 THSD7A COX7C WASL RAB3A STMN2 SMYD2 DCTN1 CHCHD2 ADAMTS6 PLD5 VAMP2 APLP1 MAP1B MTRNR2L1 TBC1D15 STXBP1 CHMP4B CADM2 CPE REPS2 SCAMP5 SYNPR CALM2 RNF11 GRIN1 TSHZ2 YWHAH CAPZB FAM3C CCK AES SYN2 DYNLL2 MT-ND4 TMEM35 APBB1 GMFB RPL32 LMO4 CD24 MAP2K4 SEZ6 KLHL5 GUCY1A3 ARL6IP1 ITM2B TCEB2 DCLK1 WBSCR17 LANCL1 CDC42SE2 GDI1 RABAC1 PROX1 PITHD1 PTPRZ1 TSPYL1 RPL41 SKP1 IDS FKBP1A MTRNR2L6 ATP1A3 ATP6V1G2 RAB3B ESCO2 SYTL2 ARFGAP2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CXCL14 DNER MT-ND4 CALM1 PRNP MT-CO2 CNR1 CPE GPM6A MT-CO3 VDAC1 CHL1 SPOCK1 PREPL CADPS2 ATP1B1 PNMA2 SYT4 SNAP25 PEBP1 CALM2 GABRA1 ARL2BP PACSIN1 PPIA ENO2 GHITM NR2F2 PFN2 ELAVL4 PPP2CB SYT1 OXR1 COX4I1 SYNPR MORF4L1 ZNF385D YWHAG MT-CO1 VAMP2 VSTM2A CLIP3 SARAF PJA2 MAGED1 NIPA1 ARL6IP1 NDRG4 CADM2 IDS PGK1 NR1I3 EIF4A2 ATXN10 PFN1 STMN1 ARL8A CHMP4B ATP1A1 ARPC5L SIRPA SLC12A5 FAM43B LDB2 TERF2IP STMN3 ARL4C PLD5 TCEB1 GNG2 PPP2R1A RAB3A ENOPH1 BAI2 GPX4 FNDC4 WNT5A TOLLIP HSD17B14 DCC PDLIM5 RPH3A SCD5 MRPL11 PHYHIP MAPRE3 MAPK1 CRIP2 MLLT11 ABHD14A NBL1 SCOC TSPAN7 DNAJC6 CTGF TPI1 YWHAB PEA15 MYO1B VSNL1 PEX5L SYNGR1 C1ORF52 ANK1 RAN SLC1A2 PRDX3 GRIN1 REEP5 ELFN1 MAP4 FAM107B ELAVL2 INA NUAK1 GAPDH BEX2 LYPD6 DRAP1 SMOC1 CERS6 DSTN NPAS3 HMP19 NPTXR GAD1 CHRNA2 NAA38 ISCA1 CDK5R1 GRINA SCN7A CAMK2D UBA52 STXBP6 CAMK2N2 FRMD4B SELT HIGD1A ATP6AP2 TSPYL1 ASAP1 SYNJ1 SCG2 MGST3 ADARB2 CNTN1 NGFRAP1 HPCA C14ORF132 TSPYL4 MT-ND3 CCK SLC9A6 FXYD6 ANXA7 HSP90AB1 CD63 LPPR4 NAP1L3 RHOB YWHAZ AP2M1 SLC30A3 NUDT21 SSBP3 IDH3A NDFIP1 UQCR10 RNF11 RFK TUBA1B SPOCK3 SPCS2 DYNLL1 IGFBP5 CAP2 PCMT1 ATP6V1B2 TUBB2A SLC25A5 GNAQ AES DYNLL2 SULT4A1 SLC17A8 EIF1AX BCL6 CMPK1 KCNA2 TMSB4X KLC1 PLD3 NMNAT2 NGEF NAP1L2 RPL35 MAP1B MRPL12 ASIC4 RTN3 NCAM2 IQSEC1 TMEM59L FBXO2 PCBP1 SEC61G NECAB1 PLCB1 HTRA1 RPL36A BSCL2 CFH MTRNR2L6 NSF NDUFA13 NGRN RP11-219A15.1 HNRNPA1P40 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MTRNR2L1 MT-CO2 MTRNR2L12 MT-CYB MT-CO3 MT-CO1 MT-ND2 MT-ND1 MT-ND3 ATP1B1 MTRNR2L8 SYT1 CXCL14 CHL1 CREB5 PEX5L ZNF385D PPP2CA GDI1 FKBP1A CAMK4 YWHAZ SNAP25 PGM2L1 CPE NRIP3 CDH5 MAP1B ARL6IP1 APP KIF5A DYNLL2 NCAM2 MTRNR2L6 MTND1P23 HSP90AB1 CCK VSTM2L TTN IGFBP5 TBCA QKI STMN1 PREX2 PSAP TMSB4X NHP2L1 TKT DCLK1 LDHB RHOA CLU LMBRD2 ARL4C NECAB1 ACTG1 MEGF11 VDAC2 SPOCK2 GNG12 LAMTOR1 GDE1 HN1 PRKACB ROBO2 SULF2 PVRL2 SCG2 NAPB SLC7A2 EIF1B SMS PPTC7 HK1 TMEM158 SERINC1 RP11-111M22.2 RPL32 HCN1 SCN2B MAF PDE1C CDK5R1 GPM6A LDB2 B3GNT1 TERF2IP FSTL5 HMGCR NAP1L3 CALM2 SNX3 FABP5 ADARB2 SLC12A5 MSMO1 WLS TSPYL4 MTUS1 PEBP1 NDFIP2 RPS6 NDUFB2 MT1X GADD45GIP1 MT-ND4L HOPX DPYSL2 DOCK10 EBAG9P1 SCN1A RPL38 NHP2 BEX1 EIF1 SSBP3 COX7A2L MYO1B ELAVL2 PHYHIPL MORF4L1 MT-ATP6 LRRIQ1 COL21A1 TMX4 PGRMC1 KIF1A CHGB PPP2R1A NDNF ACTR10 GAD2 NEGR1 MAP4 ARHGAP42 GNG2 RPL15 SUB1 CTSD GABRA1 RPL31 GPR98 ATPAF1 SARAF RAB11A PNMA2 ATP5C1 RAB2A CPLX2 B2M RPL41 SERF2 MIF GTF2H2C_2 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 MT-CO3 SYT1 MTRNR2L1 MTRNR2L12 MT-ND1 HSP90AA1 MT-ATP6 MT-CYB MT-CO2 SNAP25 FAIM2 CCK RELN VAMP2 CXCL14 SCG2 RTN3 MT-ND3 PREPL MTRNR2L8 RGS12 ATP1B1 MTATP6P1 MT-ND4L MTRNR2L6 MT-ND5 SEZ6L2 PTN RPL38 C1S RTN4 MRFAP1 DDR2 UBA52 SLC6A1 EIF4A2 CERS6 SPTBN1 DIRAS1 PNMA2 B3GNT1 PITPNA NDFIP1 BEX1 PDZRN4 ROBO2 RPS28 MZT2B DCLK1 NUAK1 NAP1L2 RAB3C RAB3A RPL13A FAM3C MT-ND2 YAF2 IDS ARFGAP2 COL6A1 SLC22A17 RPL6 TMEM59L UBE2N PLCB1 GFRA2 SNRPE CNTN1 ADARB2 DNAJC6 PTMA ENO1 RHOB VPS35 PPM1A RAB7A FTH1 ATP6V1A NARS UCHL1 PTPRN2 RPL39 LANCL1 CYFIP2 ATP6V0E2 GABRA1 PNMAL2 UQCRC1 MAGEH1 TSPAN7 NCEH1 MAP2K2 BRICD5 BEX4 PJA2 EFR3A SLIT3 CLIP3 SYT3 UBB CAPZA2 LDHB ISCA1 APP NDUFB8 SRP14 SNX10 RSL24D1 HSPA8 COX4I1 VAPB GRIN1 TCEA2 PPP3CB SEPW1 RASSF8 ADAM23 YIPF1 INA GPR158 SCOC HCN1 UBL5 SYT13 KIF3C SSBP3 SRP9 ALDH5A1 SERINC3 B3GALT2 TMOD2 SOX11 CLTC SERP2 GRINA GPCPD1 ITFG1 PBX3 UBQLN2 CAP2 YWHAB UBE2E3 GRIN2A RFK MTPN MDH1 NRSN2 ATP6AP1 MAP1LC3A NDUFA13 CHL1 SUB1 RAB40B LPPR4 SYT11 NFE2L1 RPS15 ZNF385D NPTXR AHNAK2 REEP5 NEGR1 OSGEPL1 CFL1 RPL37A C14ORF132 LSM4 SUSD4 MAP1B CLSTN1 RPL3 PRKACB COTL1 OLA1 SERINC1 RPL26 RPS4X CCDC25 RTN1 ATP1B2 MAPRE2 RPL23A SLC8A2 DKK3 NCAM2 ATP2A2 MAPK1 TOX3 RPL41 TIMP2 RAB3IP CLGN FAM84A KLC1 WASF1 MTG1 TP53I11 CABP1 ATP5I TRHDE SCN7A TMSB4X THYN1 H2AFZ SKP1 PEBP1 RNF11 DPYSL2 HNRNPH2 NAP1L3 FAM127A KIF21A PSAP SNCA SEC61G VSNL1 CDK14 PSMC3 RP11-20I23.1 ATP6V0C BSCL2 PET100 GTF2H2C_2 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MTRNR2L1 MT-ND4 MT-CO1 MT-ND2 MT-ND3 ATP1B1 LRP1B MTRNR2L6 TBC1D15 MT-CO2 MT-CYB KIFAP3 MT-ATP6 SLCO4A1 DNAJC6 RPL32 ZNF385D UQCRC1 SYT1 DPF3 SLC38A1 SLC6A17 ARF5 GPM6A GUCY1B3 CSDE1 HSP90AA1 GOT1 GAD1 TMEM120A NR2F2 RPL13A SSBP3 NAPB KIT ARL6IP1 SCOC KIF21A MAGED1 VAMP2 BLOC1S1 PNMA2 WIF1 ROBO2 THSD7A STXBP1 CHMP5 RPS28 ACTG1 MORF4L2 RPS27A MT-ND1 PROX1 CADM2 KIF1A CDH13 ARF1 FAM149B1 SNRPN DNAJC5 ATP1A1 HDLBP MTATP6P1 CAMK4 EDIL3 CDC42SE2 HS6ST3 CA11 RSL24D1 NDFIP1 DMKN GABARAPL1 DNER SERINC1 PRNP TMEM200C KCNC2 AIMP2 MAPK1 RASGRF1 DCLK1 RTN4 UBC TMEM35 RPS5 UTRN PPP2R2B ERBB4 SLC12A5 MTRNR2L8 TTN SMAP2 SEPW1 ATP6V1B2 BASP1 ITM2B COX7A2 ENO2 PJA2 SYT13 LGI2 PPIH GSTT1 MTND2P28 CPLX2 STMN2 LAMTOR1 RPL41 MAP1B BCL6 SEZ6 PPARGC1A KLHL5 MTRNR2L12 OPRM1 RP11-219A15.1 ARFGAP2 RPL18A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-ND2 MT-ATP6 MT-ND3 MT-ND4 ATP1B1 MT-CO1 MT-ND1 SNAP25 SYT1 CHL1 OXR1 GAPDH MTRNR2L12 BIRC5 MT-CYB SYTL2 RAB3B NDUFB5 VSTM2L ACTB RGS12 SMYD2 EIF4A2 SPOCK1 MAP1B GAD1 MTRNR2L8 NR2F2 RPL38 CALM2 VSTM2A SLC6A1 AK5 DNAJC21 TBC1D15 NR1I3 FAIM2 PROX1 DPY19L1 PIK3R1 RPL13A CNTNAP3 CALM1 CHST11 ERBB4 FBXO2 HSP90AA1 COL12A1 FGF2 NEGR1 RTN3 ENO2 SEMA4G IGF1 SPTBN1 MTATP6P1 RELN BASP1 MTRNR2L1 SLC25A22 RAB11FIP5 CALM3 APLP1 PFKP ARL6IP1 MT-ND5 DNAJC5 BCAP31 TMEM35 UBA52 OAT CAMK2G TAC1 TMSB10 OLFM1 B3GALT2 DOCK10 PPM1A SUMO1 NAP1L3 VAMP1 CADM2 MAP4 ITM2B GPM6A GAD2 TSPYL4 RNF11 HMGCR PEBP1 ADAM33 ATP5G3 RCAN2 PRKAR1B RBX1 DNAJA1 VSNL1 TSPAN7 RRM2B MORF4L2 SYNGR3 CHRNA2 RND3 CCK DPP6 SLC39A10 PSD3 MTND2P28 FAM127A SCN1B ARF1 PPIA KCNC2 FAM84A TUSC2 MTND1P23 SLC1A3 CHADL GABARAPL2 MAP1LC3A KIF21A PTPRN2 MAP1A HBQ1 CHRNA6 THY1 RAB3C ANKRD26P3 CD63 MAP2K4 UQCRH MT3 CERS6 SKP1 NDFIP1 RNF208 SELT INCENP HIGD1A PLD3 LANCL1 KCTD12 ATP6V1G1 TOMM20 RAN STMN2 RASSF8 FAM163B BTBD11 ARL4C SNCG ISCA1 PSMD12 DGUOK TUBD1 TLR1 ATP5O COX5B PNMA1 EPHB1 RSL24D1 PTMA PPP2R1A CRKL PPP2R4 RTN4 CACNA2D2 ELFN1 SPHKAP UBE2N REEP2 TUBA1B TUBB2A ARL2BP MAP2K1 NRCAM TPD52 PCSK5 YWHAB LBH TMOD2 GABARAP FTH1 RNASEK-C17ORF49 IDS PPP3R1 RP11-111M22.2 PCDHAC1 PCDHA4 PCDHA9 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-CO2 MT-ND4 MT-CO3 MT-ND3 MTRNR2L12 MT-ND2 MT-CO1 SYNPR OXR1 SNAP25 TMSB4X IGFBP5 MT-ND1 NPTXR CALM1 SERINC1 ZNF385D THSD7A YWHAG NPTX1 INPP5F RPS28 TUBB2B EIF1B ZBTB20 MTRNR2L8 RAB6B RTN4 PCDHA4 ATP1A3 NAP1L3 PRNP BAG4 RTN1 MT-ND4L SCG2 IDS MT-CYB ARL6IP1 PROX1 RPL37A SERPINI1 ATP2B2 TAC3 RPL39 DCLK1 RPL23A CDK5R1 DIRAS2 SYTL2 RAB3B GLRA2 PSMA7 TBCA C18ORF32 MT-ND5 ATP6AP2 ATP6V1C1 RPS5 CAMK2N2 TMEM130 SLC12A5 ETV5 PRKAR1B TF NAP1L2 HMGCR HSP90AB1 RTN3 ARFGAP2 RP11-111M22.2 ENSA SARAF RPL13A ATP1B2 NUTF2 GPM6A DIRAS1 CHRNA6 ATP9A HDAC1 KCNIP1 AP1S2 CKB FXYD6 CADM2 WASL C6ORF141 PSMC5 ATP1B1 TMSB10 ITM2B GDI1 RAB2A SYT1 KLC1 NR2F2 PPP2CB C14ORF132 PTMA CLIP3 UBB IL6R TMEM59L DPF3 ARL4C GPR56 HPRT1 EIF4A2 STX1B CXXC4 HSP90AA1 PCDH17 IGF1 CD99L2 PNMA1 ARX PDCD5 CTNNB1 ALDH5A1 HNRNPH2 ATG9B FAM107B NDUFB8 MTRNR2L1 CNR1 NRCAM PCYT2 ACTR6 VDAC3 ACTR1A OLFM1 SNCA STXBP1 FAM134A LMO4 MARCKSL1 FAIM2 UQCRB SYT11 CDC42SE2 RPL21 FAM3C MAP2K4 SKP1 TKT NDN JUNB GNG2 EIF1 CAB39 PRELID1 NELL2 VSNL1 TENM3 APP SEPT4 ARF3 TSPAN7 KLHL12 ITFG1 FIGN KCTD12 COX6C BCAT1 ARF5 ERBB4 CLU BASP1 SYT2 NECAB1 GSKIP SEPW1 CALM2 PEG10 NGFRAP1 PCDHB11 PPP2R4 TSC22D1 AES NBL1 SLC22A17 KCNA2 GDA CORT BSCL2 RPL41 RP11-219A15.1 RELN TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ND4 PROX1 MT-CO3 CCK SYNPR MT-CO1 MT-ND2 TBC1D15 MT-ND1 CPLX2 IGFBP5 MTRNR2L1 DKK3 RPS3A DPYSL2 ASAP1 ATP1B1 RPL8 RPL21 RTN4 ATP2A2 DMTN CALM1 MT-ND3 RPL23A CLSTN1 PSAP RPS28 MAF ACTB PEBP1 CHN1 SNN CLU VSTM2L RPL38 UBC TF PREPL TMX4 ATP6V1F MT-ND4L TMEM70 GRIN2A NAT8L PSMB5 EFR3A TMSB4X CAMK4 ZNF536 ATOX1 WBP2 MT-ATP6 PARM1 OAZ1 NDUFB8 KLC1 PRKAR1B MAP1B EID1 BRK1 PEX5L SALL1 SPTBN1 PCSK1N RPL37A NDUFB1 RPL13A MORF4L1 DCLK1 TRIB2 PAFAH1B2 HK1 RPL41 SUMO2 OXR1 ATP5E SOX2 STMN3 EIF4G2 PTPRM SEZ6 LRP1B MZT2B ERBB4 MT-CYB ZFAND5 CADM2 BCAS2 SSBP3 RASGRF2 PELI2 TSPYL4 PRKACB LANCL1 PGM2L1 OXCT1 VIP ARL4C HMP19 GAPDH CDK5R1 NPTN TSPYL1 SCN3B KCNA2 NEGR1 CIAPIN1 DRAP1 GPM6A SP8 TRPV2 ARHGAP35 NBL1 BASP1 SEZ6L2 APP FAM134A TGOLN2 KIAA1211 ATP1A3 AP3S1 HTRA1 RPL13 TBCA SLC25A6 ELFN1 SYT3 ANAPC13 FAM3C GPATCH4 CALM2 CXCL14 PDZD11 ITPR2 HSP90AB1 RAB3A QKI PFDN4 PEA15 CKB RPL7 CLTC ATP6V1A GRIN1 PPP2R2C RPL12 NFIA PFN1 EIF4A2 RAB3C DNER YWHAZ ACTR1A NCAM2 HSP90AA1 PPP2R2B SKP1 GDI1 ASIC4 SLC22A17 CAMK2N2 SLC9A6 NUDT21 RPL31 TSPAN7 KIFAP3 CYP27A1 DNAJC6 COX4I1 ARL6IP1 RPS15 SNCB RTN1 ATP1B2 PPP3CB SYTL2 RP11-20I23.1 IDS RP11-219A15.1 ATP6V0C RPL3 RPL18A RAB3B RPL36A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 ATP1B1 RAB3B MT-CO1 THSD7A MT-ND4 ARL6IP1 RPL13A VAMP2 NGFRAP1 FXYD6 RPL35 NR2F2 SERF2 RHEB RPL26 RPS15 ATP1A1 RPL13 PIN1 MT-ATP6 HNRNPH2 ATP5E UBE2N SLC9A9 SERINC1 CALM2 HMP19 SYN1 CAPZA2 RTN4 UQCRQ GAD1 OAT RTN3 CREG2 MT-CO2 CERS6 TERF2IP SYNPR S100A6 ATP5I GAPDH POMP MT-ND3 MT-CO3 RPL41 ATP6V1A YWHAG CKB DNER RTN1 GSTP1 RPL37A CCDC184 UQCRC1 GDI1 ATP5G2 NAP1L3 ATP1A3 STMN1 EIF1AX MTATP6P1 CCDC25 USMG5 RSL24D1 SRM RPL11 NDUFB4 RAB6B SEZ6 SNX10 CMAS MAP1A APP OXR1 SNCB PPP2CA PRKAR1A PSMA7 NDFIP1 DPYSL2 RAB6A VPS35 UROS NCALD NDUFAF3 RPL15 IDS LIPT2 CLIP2 GRIN2A PTMA GRIN1 SYT1 RAB5C CD99L2 MORF4L2 ATP9A C11ORF31 PRKACB PCBP1 TMSB4X RCAN2 KCNAB3 DIRAS3 SEPT4 CLSTN2 HPCA NFIA AP1S1 MTRNR2L12 ARL4C SLC9A6 ATP6V0B RAB3A COX4I1 ADAMTS1 HDAC1 TOLLIP GPM6A RPL32 MGST3 TUBB2A HIGD1A PFKP VSNL1 PPP3CB PNMAL1 CALM1 ATP6V1E1 MAPK1 SYT5 UBE2M RPS3A GHITM RPL18A RPL23A NREP TCEB2 DMKN STRAP FKBP8 SLC8A2 C18ORF61 RNF11 COX6C STX1B SLC22A17 CABP7 CSDE1 MORF4L1 HAPLN4 AK5 GDF10 RIT2 PRNP GAD2 LANCL1 SERPINF1 REEP5 RPL8 SLC6A17 RP11-632C17__A.1 CDK5R1 CAPZB PTPRM TSPAN7 ZNF365 MDH1 YWHAZ SLIT1 MACROD1 ATP2B2 CFH UQCR11 ACTB NEGR1 SULT4A1 KCNAB2 CLTC MT-CYB STX1A FABP6 GPX4 TMEM59L ATP6V1B2 ARF5 CXCL14 DNAJC5 TPD52 MRPS21 ACTG1 CNRIP1 DCC POLR2I RHBDD2 SCOC GPX1 SCD5 CPE SEC61G SUCLA2 KIT ARF3 CHCHD2 VIP SPOCK1 GADD45GIP1 PPDPF MRPL33 NME1 DNAJB6 RPS6 PTGER3 MAP1B ATP6AP2 CLIP3 TSHZ2 SOD1 CNTN1 VSTM2L CAMK2N2 ASPDH RPL31 MZT1 STK39 PTGDS NUDT21 CLSTN1 TSPYL1 FABP3 DYNLL1 CCDC152 NPY SCN1B ELAVL2 CLU NAT8L DDN ERBB4 NPTN MT-ND5 CTSD ERH OCIAD1 PPTC7 ADD2 ITM2B ARHGDIG SNRPE PLD3 AURKAIP1 TMA7 MYL6 CRIM1 ARPC4 AP2M1 NDUFC2 KIF1A MAP2K4 RPS28 NUTF2 PKM NDUFB2 DPP6 TMSB10 NCEH1 VDAC3 DNAJC21 TBC1D15 RPL3 GABARAP RNASEK-C17ORF49 MIF ATP6V1G2 RPS26 RP11-219A15.1 PCDHGA6 PCDHGA5 PCDHGA10 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL26 RPS15 RPL37A ZNF385D RPL41 RPL6 ATP1B1 PRKCB CALM2 RGS12 RPL35 SYNPR RPL12 DUSP1 MT-ND1 MT-CO1 ATP6V0E2 RPLP0P2 MT-CO3 GRIK1 NCALD RPL13A HINT1 LAMTOR1 CADM2 RPS2 ERBB4 FXYD6 OLFM1 TENM3 RBX1 TAC3 GPR149 LCNL1 RPL13 DYNLL2 ESCO2 RAB6B KCNA2 CPE SV2B KIF1A NHP2L1 ATP6AP2 UQCR11 LDB2 SPOCK2 STXBP1 FTL PDE1A OR6D1P PTPRN BSN RTN3 TSPYL1 EIF5A2 UBB PTMA ATP5J2 CNTNAP5 YWHAZ SCN2B ARL6IP1 PPIA TUBB4B SELM FTH1 PAM HRH3 PTPRZ1 PNOC CLDND2 CERS6 TUBB4A EIF4A2 SLC22A17 MZT2B NFE2L1 CAPZB PTCHD4 ATP6V0B SHISA8 PPP1R7 ATP5E ANK1 GDI1 CCDC184 PEBP1 NAP1L5 UQCRH ASIC4 NAT16 PSMC1 SCN3B PSAP NPTN ATP1A3 OST4 MT-CO2 RPL11 RPL17 RPL15 CTSD SHARPIN RPL3 NDUFV1 DPF3 ROBO3 ARL4C EPDR1 DNAJC6 MTRNR2L1 ELAVL2 TP53I11 AP3S1 RAB27B MFN2 RPS4X BRICD5 SYT2 BSG MAP1B GABARAPL2 JUND TMEM160 CHL1 TMEM141 SLC25A6 MT-ND3 RPL32 PRKACB NDUFA13 SLC12A5 SCN1A GNB1 PNKD ARX RAB1A RPL23A SNCG SYT11 SERINC1 CXXC4 GDA LRP1B ATOX1 SLC9A6 ACTB SLC6A1 TSPYL4 SEZ6 EGR1 GNAQ DPP6 SPTBN1 DYNLL1 NDUFB1 CADM3 MT-ATP6 SYT13 HSP90AA1 NGFRAP1 SYNGR1 SCD5 CDC37 PHYHIP UBA52 LGI2 FAT1 PNMAL2 MTCH1 SOD1 GHITM RPS27A PDE9A HTRA1 POLR2M RPL10A PCSK1N BIRC5 RTN1 DNAJB6 TMX4 OPCML TUBA1B CFL1 RPL36A NRGN PPM1A RAB3A NMUR1 LL0XNC01-16G2.1 CPLX1 RTN4 USMG5 TMEM14A RPS6 RPL17-C18ORF32 SPX RPL18A MT-ND2 EDIL3 PJA2 TCEA2 SIRPA BCAS2 WASF1 SEZ6L VDAC3 FAM96B SLIT1 ISCU RP11-20I23.1 ATP6V0C TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
[
{
"content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.",
"role": "system"
},
{
"content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CCK ZNF385D TAC3 VIP DCLK1 SYT1 MT-CO1 ERBB4 MT-ND4 APP CALM1 RPS28 RTN1 MTRNR2L12 GAPDH SYNPR CTC-575D19.1 FXYD6 SLC12A5 MT-ND3 MT-CO2 ATP1B1 RPS5 PCP4L1 NDUFA1 CKB MTRNR2L8 ARL6IP1 PPP2R1A PROX1 ATP5J2 CLIP3 BAG4 ATP5B CALM2 ROBO2 NEGR1 CALM3 PAM YJEFN3 EIF4A2 SLC6A1 PTHLH MT-CYB PCP4 ACTB RPL6 SLC9A6 TENM3 IDS RPL7 REEP5 PJA2 NDN QKI ARF1 ABHD14A NMNAT2 TMEM258 RPL18A AP2M1 ATP6V0E2 SLC24A3 HSP90AB1 NBL1 PTPRS FAM96B ENO2 SPARCL1 CDK5R1 NDUFA13 CADM2 STMN4 UQCR10 IDI1 TUBA1B TSPAN7 SPOCK2 PEBP1 MIF PIK3R1 OXR1 FTH1 RPS3A LPPR4 RBX1 CD99L2 HSP90AA1 NAPB TMEM70 BEX4 PGM2L1 RTN3 NPTX2 ALKBH7 DPYSL2 KLC1 RAB5C CDH13 C14ORF2 SPCS2 PSMB5 C2ORF80 PRNP BEX1 RGS16 SCD INPP5F RRM2B TM2D3 WFS1 MT-ND4L GOT1 RPL15 ITPR2 CNTN6 ALDOC MTFP1 ARL4C PTMA MBP SYT17 MT-ND2 VAMP2 CNTN1 ATP6V1A MMD RPL37A PRKCE NDUFB2 COA3 HK1 MPC2 NCDN HINT1 WNT4 CREG2 CHCHD2 GAD1 SPOCK3 SNX10 NDUFB1 RPL38 TRHDE KCTD12 OPCML NME1 RP11-632C17__A.1 FARSA MDH1 PPP2CB THSD7A RAMP2 WBP2 UBE2L6 MTUS1 FIS1 NDUFS5 SNRPN SEPT4 SLC1A2 MAP1B SCN1A DRAP1 SAP18 CDK14 PCDH8 PNMA2 RAB3A SCD5 NGEF PPIA GUK1 SUSD4 KCNC2 C1D ENO1 NAP1L3 CPNE2 DNER ACTG1 STK24 EHD3 SLC25A6 RNF208 TOMM7 RSL24D1 PFN2 ZFAND5 RPL23A ARHGDIG DNAJB6 RTN4 HTR1F EIF1AX TMX4 UBE2QL1 PRKCG GPR158 C19ORF10 PCDH19 MAP4 PSMA7 SYNJ1 SCOC BSCL2 ARHGAP35 MARCKSL1 C16ORF13 NDUFS6 PREPL TGOLN2 VSTM2L SNAP25 ATP5O RPS27A CTSD MAGED1 D4S234E RHOB SERINC1 MGST3 PGRMC1 RCAN2 ASIC4 ITM2B RPS4X DGKG RPL8 CCM2L RLIM NPR3 KIF1A RAP1GDS1 RAB2A COX7C CISD1 AP1S2 NTNG1 TOMM20 ARL8A SMOC1 UBE2V2 CHRNA2 MT-CO3 UQCRB LANCL1 DKK3 ACAT2 RGS12 CCDC85B ATP1A3 NDUFA4 YWHAZ STMN1 TERF2IP MT3 ADAM33 ANXA7 CFL1 PSMC5 CAMK4 MAPRE2 AP2B1 MRPL20 DYNC1I1 SSBP3 PPP3CA KIFAP3 IGFBP5 GABARAPL1 TBC1D7 SSTR2 RPL35 DOCK10 FTL ZBTB18 SLC22A17 PSMD8 TIMP2 IGF1 BRK1 ANXA6 CHGB ATP5E PTPRN SNRPE PRKACB ATP5C1 GPM6A RAB6A TMSB10 SYTL5 MAST3 RPL12 HSPA8 AP2S1 STMN3 VSNL1 NGRN NPTXR DLX1 LMBRD2 ARL8B GNB1 CNTNAP5 ATP5A1 IFT52 NDUFB7 GSG1L TPD52 CBX6 MRAS VIPR2 FAM219A UQCRQ MYL6B RPS2 HMGCS1 NPTN STX1B ATP5J MTRNR2L1 UBL5 SYN2 HS6ST3 GUCY1B3 CLPTM1 BSG PRKCB RPS15 LMO4 NDUFB11 DNAJC6 HMGCR RPL21 RPS26 RPL17 RPL13A ALDOA MTRNR2L6 RPL3 RPL17-C18ORF32 TUBB3 RP11-20I23.1 RPL41 MCHR2 ATP6V0C RPL36A TF CYB5R3 BIRC5 ESCO2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.",
"role": "user"
},
{
"content": "VIP-expressing interneuron",
"role": "assistant"
}
] |
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