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[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 MT-CO1 SYT1 CALM2 CHN1 MT-CO2 RTN4 MT-ND4 ARPP19 ENC1 CALM1 TSPYL1 RP11-111M22.2 MT-CO3 SERPINE2 MT-ND2 RTN1 VSNL1 FTH1 AK5 CLU TSPAN7 BEX1 CLSTN1 SLC39A10 CCK APP SERINC1 PLD3 PKM PRKCB GAPDH RTN3 PRNP APLP1 ACTB PSD3 NRGN CDK5R1 FXYD6 TESPA1 CALM3 NPTN C14ORF2 PIK3R1 CREG2 VAMP2 USMG5 EIF4A2 OLFM1 TMSB10 ARL6IP1 SCN3B TCEB2 TUBA1B RELN CKB BRK1 RPS28 DPYSL2 THY1 ATP1B1 SLC12A5 NDFIP1 ITM2C MT-ATP6 YWHAG RAN GDI1 C16ORF13 OCIAD1 CAP2 MT-ND1 RPL31 MAP1A PTK2B MAP1B CPE PRKAR1B NRCAM GRIN1 RCAN2 PPP3CA NGFRAP1 NELL2 RGS4 TMEM59L PSAP HSP90AB1 IDS ATP1A1 TUBA1A OR6D1P ZBTB18 C1D STMN2 DCLK1 APLP2 SYNGR1 RPL41 PRKAR1A SYT13 PGK1 DPP6 ATP5E MTATP6P1 ADD2 MTRNR2L1 MAPRE3 RPL32 PEA15 MAST3 UCHL1 HMP19 ATP2B2 SUMO2 NDUFA5 MZT1 NAP1L2 SEPW1 CEND1 TSC22D1 ATP6V1G1 CNTN1 ENSA CHL1 KCNV1 SYT4 PHYHIP JUND FAT3 RPS15 RANBP1 BASP1 RPL11 MT-CYB RAB6B HK1 ARF1 PCBP1 NECAB1 ATP5A1 LGI3 STXBP1 MYL6 SPRYD3 STMN4 CA11 RHBDD2 C1ORF115 SARAF ESCO2 ARFGAP2 ZNF385D SERINC3 MORF4L1 CYFIP2 CLIP3 RASGRP1 TOMM20 NDRG3 RRM2B TMA7 REEP2 GHITM RPS27A ARHGDIA PPIA ENOPH1 SLC9A1 PIN1 ENO2 FKBP4 MYEOV2 TERF2IP CAMK4 ATP6V0E2 SLC8A2 NDUFB2 COX6C PGRMC1 KIFAP3 ACTR1A NDRG4 GABRA1 PJA2 UQCRH COX5B YWHAH PDP1 COPG1 ARL6IP5 CADM2 MAP2K4 ARL8B LYNX1 RTN4R ATP6V1B2 SH3GL2 NCEH1 DNAJA1 ATP5B PRKCG SCN1A TMEM14A CMAS NFIA CBLN4 SKP1 SERPINI1 COX4I1 NUDT4 ATP6V1E1 SLC9A6 CRIM1 LMO3 MT-ND3 PREPL STX1B CORO2B PPP2R4 GMFB PRKACB PGM2L1 ARF3 RABAC1 SLC22A17 VDAC3 SYN2 HPS6 EPB41L3 HNRNPH2 BAD PCP4 CFL1 FAM163B SPTBN1 DYNC1I1 MAL2 PDE1A YWHAZ OXR1 BSN MAPK1 CDC42SE2 DNM3 TUBB2A SPOCK2 MT-ND4L DCTN3 SUB1 ATP6V1F RPL13 THSD7A ISCU RAPGEF5 NEGR1 NAP1L3 HMGCR COX7C TCEA2 ACTG1 RPL35 GUCY1B3 BNIP3 STMN3 ITFG1 NCALD MDH1 RP11-219A15.1 MTRNR2L6 NSF ALDOA ATP6V0C RP11-20I23.1 HOPX GTF2H2C_2 USP5 RHEB NTNG1 PRDX1 HINT1 GSK3A LAMP5 MTPN DNAJB6 NDUFB10 S100A6 MRPL33 STX1A CAPZB SLC1A2 C7ORF50 NUTF2 EIF4G2 GTF3A HHATL BAALC ETS2 CYC1 NDUFS6 MBP RAB11A UQCRQ NUP37 PITHD1 LCNL1 NUDT21 TM6SF1 PNMA2 NDUFV1 PNMAL2 TXN FAIM2 RAP1GDS1 ATP6V1C1 C19ORF43 PPP3CB ATP5G3 KCNMB4 MSMO1 VSTM2L SRD5A1 SYN1 SCAMP5 NDFIP2 MGST3 RPS4X ONECUT2 UROS COX17 FAM131B PEBP1 COX5A GNAQ WASF1 CDH8 NPTXR DHCR24 UBE2V2 RSL24D1 MAP1LC3A CRYM CTNND2 CD63 SUMO3 CAMKK2 TIMP2 MAGED1 PCDH19 MED31 TPPP SEZ6L EGR3 CRIP2 HAPLN4 PEG10 LRP1B AC011043.1 MYL6B VGF PPP1CB S100A10 DDAH1 CHMP4B CAMK2G TAGLN3 SNN PPARGC1A SLC24A2 HSPBP1 OAT C6ORF1 MAP2K1 SV2B ATP6AP1 GOT1 GABARAPL2 ATP2A2 PTPRQ SNCA PLEKHH2 SLC6A17 SPARCL1 HMGCS1 PNMA1 GPR26 LINGO1 TEX2 VPS35 NDUFB7 CNRIP1 BSCL2 MORF4L2 FXYD7 DNAJC6 DKK3 RPL38 ZMAT2 NBL1 TOMM7 GDA LSM4 CABP1 BCKDK ARHGAP35 ATP6V1A CARD16 RAB5C RPL39 AP3S1 INSIG1 BSG RAMP1 DPY30 JUN HTR2A TUBD1 MRPL20 SELT TPI1 TTN AP1S1 GPR158 NDUFB4 RHOB ARPC4 WBP2 FAM19A1 BTBD1 ERH SNX3 CPLX1 SNX17 TUBB4A LANCL1 VDAC2 RAB2A MRPS21 ZFAND5 APBB1 KCNC2 HPCA UQCR11 HS6ST3 ANAPC13 DCTN1 PLCB1 EPHB1 KIF21A SLC25A5 HSPA8 FGF12 MLLT11 FKBP1A PTPRT RPL18A YIPF3 CERS6 YWHAB OPA1 OST4 PRKD2 DYNLL1 VDAC1 FLOT2 LDB2 RAP1GAP2 PRDX5 PSMC1 OAZ1 KLHL5 UBE2E3 ADAM23 ATP5J2 RPL6 BEX2 TCEAL2 ATP6AP2 SEMA3C MRPL11 PFKP HOMER1 ATP10A SYT5 UBE2D2 CLTC MCHR2 BLOC1S1 CDK5 CTC-575D19.1 SUCLA2 PITPNA STMN1 KIF5A FIS1 PLEKHG1 SERPINF1 PNKD SYT11 BTBD10 CTNNB1 HSP90AA1 CPLX2 SCOC TBCA KIF1A RAB6A SERPINI2 ID2 NRIP3 RRAGA MIF NDUFC1 PTPRS EIF1B SLC2A1 CDK14 MTCH1 CTSD CD99L2 GPM6A TUBB4B DYNLL2 DNER CPNE4 RAB6C-AS1 RNF11 ATG101 COMMD6 TMEM147 NDUFB8 SDCBP RAP2A NDUFB3 EIF1AX SULT4A1 UBC ANO3 PSMA7 VSTM2A ATXN10 SPOCK1 NAA38 RPL37A OLFM2 WSB2 SLC25A53 ARL8A CAPZA2 UBA52 DIRAS2 PFDN4 TMEM158 NHP2 FABP7 PI4KA TMSB4X ACOT7 DGKG BEX4 METTL23 RAB3A COX6B1 SRP9 YWHAQ PDLIM5 QDPR ATRN PPP2CB RPL3 PPDPF PTGER3 MAP7D1 CRTAC1 C14ORF132 ROBO2 BRINP3 PTMA NAT8L NDUFA8 NARS CNGB1 TM2D3 KIAA1045 KCNK1 SRM GRIN2A PDCD5 REEP5 EPS15 DSTN PTPRN2 IDH3A GRINA CD59 NDUFB11 MT-ND5 NDUFA1 SNCB TMEM65 GSG1L ATP5J UHMK1 SYNGR3 EID1 MTRNR2L12 CMAHP NRF1 TBCB NPTX1 SSBP3 CNR1 TMEM130 C2ORF74 RPL36A NGRN SERF2 PSMB3 NDUFA13 RPL17-C18ORF32 PGAM1 RPL17 RPL13A AC244489.1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 MT-CO1 SYT1 SNAP25 RAB3B CALM2 MT-CO3 MT-ND4 MT-CO2 CCK MAP1B PPP3CA CHN1 CALM1 RTN4 ENC1 RP11-111M22.2 ZNF385D NRGN SYTL2 VSNL1 SPARCL1 ARPP19 TSPYL1 MT-ATP6 OLFM1 MT-ND3 RTN1 CALM3 TMSB10 MT-CYB SCN1A ATP2A2 KIF5A YWHAB GPM6A ATP6V1B2 NECAB1 C14ORF2 SEPW1 RTN3 EIF4A2 YWHAH VAMP2 MT-ND2 PRNP PTPRS TUBA1B GAPDH STXBP1 DPYSL2 CABP1 FTH1 SLC39A10 NSF IFI6 MLLT11 NDFIP1 YWHAG CHL1 TMOD2 SERINC1 STMN2 NELL2 APP ARL6IP5 TMSB4X GDI1 MT-ND1 TSPAN7 COX7C PPIA SERINC3 SYT11 PGAM1 PJA2 PKM ATP1A1 PIK3R1 AC244489.1 NR1I3 ATP1A3 DYNLL1 HSP90AA1 SYT4 CKB PSD3 PSAP ATP2B2 KLC1 MTATP6P1 PRKCB PHYHIP UCHL1 ATP5B ACTB HS6ST3 GAP43 NEFL NUAK1 SNCA NEGR1 NMNAT2 FAIM2 SYN2 BEX1 CLU CADM2 THY1 BIRC5 CFL1 PRKAR1B DIRAS2 GABRA1 PLCB1 ATP6V1A CDK5R1 MAPK1 HSP90AB1 KIF3C NUDT4 VDAC3 STMN1 DCLK1 TCEB2 NARS MORF4L1 APLP2 TRIM37 GHITM SERPINI1 LYNX1 SLC17A7 SLC24A2 SPOCK1 REEP5 DKK3 EID1 KCNAB2 ALDOA SEZ6L2 ATP6V0C RP11-20I23.1 CEND1 OXR1 APBB1 CNTN1 PPP2R1A SKP1 RAB3C PREPL PRKACB ENO2 DHCR24 TUBA1A TSPYL4 FAT3 UBL5 INPP5F AES COX6A1 PPP3CB CAP2 VPS35 TBCA ATP6V1G1 CERS6 SARAF KCNV1 HMP19 MTRNR2L1 YWHAZ ATP5I TMEM130 PTMA TUBB2A SNCB ATP6V1F GRIN2A MORF4L2 CTNNB1 RORB FTL NAPB NRN1 FKBP1A PFN2 CPE PTK2B BSN STX1A DYNLRB1 CLSTN1 SLC12A5 EPS15 PEBP1 NRCAM HAPLN4 VDAC1 PTCHD4 TBC1D15 NPTX1 SYNGR1 NDUFC2 SPTBN1 GABARAPL1 PDP1 CRIP2 DYNC1I1 RPS28 UQCRH HK1 RPL13A NDFIP2 WASL RAB3A CDK14 RGS4 PEX5L PINK1 UQCR10 EIF1 RAB6B RAP1GDS1 TUBB4B BEX2 DNAJC6 TOLLIP PFDN1 CHMP4B SUMO2 PNMA2 APLP1 ARL6IP1 ARF1 RPL32 NCDN TAGLN3 UQCRB BEX4 ENO1 GOT1 NDUFA5 UBC AP3S1 WASF1 PGK1 RAPGEF5 MARCKS MAPK8IP2 MAP1LC3B TOMM20 SULT4A1 AP2B1 PPP2R2B TSC22D1 BAI2 GRINA MTRNR2L12 TPI1 CA11 TPPP MT3 RPL7 NDUFA4 RAB2A NCEH1 ACTG1 C1ORF56 LINGO1 VAMP1 UBA52 ATP6AP2 NDUFA1 PRDX2 TMX4 SLC22A17 COX7A2 KIF21A SUB1 AK5 MAST3 ETFB ATP6V1E1 SRP14 ONECUT2 AP2S1 SNX10 PHKG1 BAALC PLD3 ENSA MAL2 RPL17-C18ORF32 PRKCE OPCML CPNE8 TM2D3 PDCD5 MAP7D2 PSMC3 EIF1AX STX1B NPTN COL5A2 CAMK2G PSMD12 NHP2L1 HIGD1A HMGCS1 PPP1CB YWHAQ C11ORF31 CAB39 ARL8A NDUFB7 SSBP3 NCALD MAP2K4 NGFRAP1 UBQLN2 TMEM70 CAMK4 SYNJ1 WSB2 OCIAD1 D4S234E KCNH5 PTPRN GNB1 GUK1 PAK1 SPRYD3 IDS LMO4 SIRPA HSPA4 RHEB SELT NDUFB8 MLF2 TUBA4A MYRIP FAM134A ISCU ATP9A RPS2 HSPBP1 HDLBP NDRG4 NEFM RPL37A LDB2 TCEB1 ELMO1 FAM84A TTN SNN PACSIN1 DCTN1 NGEF GLRA3 CX3CL1 NAT8L EDF1 TCEA2 ATP5A1 S100A6 CREG2 CYFIP2 C12ORF49 LANCL1 EFR3A MAP1A ATP6V0B EPDR1 ADD2 BSCL2 GOT2 NDUFA11 CAPZA2 FIGN UBE2V2 KCNA2 RPH3A CDH8 UBE2N FAM219A PCMT1 PPP3R1 OAT DNAJB6 DSTN PPDPF ITFG1 CADPS2 USMG5 ACOT7 SERPINE2 RPS26 PNKD PTGES3 GPX3 SCG2 RAB11A IQSEC1 ADAM23 C9ORF16 STXBP6 PTPRT POLR2I DLD STMN3 CCDC85B HSPE1 EIF4G2 RNASEK-C17ORF49 TUBB3 PCDHGA5 ARFGAP2 CFL2 UHMK1 NCAM2 RAB40B RHBDD2 TUBB4A JAKMIP1 KIFAP3 PSMD8 GDA PRELID1 MAPRE3 LINC00087 PCDH8 CYP1B1 DPP6 PSMA7 FXYD7 CYC1 OXCT1 SMAP2 ATOX1 RPL15 FXYD6 SDCBP MANBAL PI4KA RBX1 POMP UBA1 SERP2 BCAP31 ENOPH1 CLIP2 TPT1 LZTS1 LAGE3 GPR98 TESPA1 CDC42SE2 SPCS2 SH3GL2 ARHGDIA HSPB3 ESYT1 MGST3 PPP2R4 SCAMP5 TMA7 B3GALT2 RPS12 NDUFS6 DDX3YP1 LMO3 DNAJC5 WDR47 RPL18A TMEM258 CCDC183 NIPA1 RAB7A SLC35B1 CA10 PNKP CRYAB ANO3 RAN GUCY1A3 SIGIRR LINC01296 KLC2 VDAC2 HOMER1 TMEM59L COX8A NPTXR SCN3B RAD23B SYNPO RAP2A FUNDC1 FBXL16 NDUFB11 ZFAND5 TOMM70A CBX6 B3GNT1 NREP FBXL15 HMGCR LGI3 DIRAS1 PITPNA ASPDH PHB ANAPC11 BANF1 PRKAR1A RPL21 NDUFAF2 MAP2K1 YAF2 RAB3IP TPD52 PGRMC1 CISD1 CTNND2 TM6SF1 C19ORF70 SV2B JUND PET100 SOD1 BSG GMFG COX5B FGF12 MTPN GNAQ ELAVL4 SH3BGRL3 ARF3 RPS6 LMBRD2 SRP9 OAZ1 TCEAL7 AP2M1 FSCN1 GTF3A PCSK1 SLC30A3 TBCB PNMAL1 NEUROD6 SYT13 TGOLN2 SYNGR3 LMBR1 CTSD INA CNRIP1 MIEN1 NDUFA13 RFK HCN1 MTCH1 BCAS2 BASP1 ACP1 CLTB RNF11 COX4I1 ITM2C FAM131B TLN2 COX7A2L QDPR ABHD14A CLTC CTBP1 PARM1 MET TPGS2 SELM GNG3 MDH1 GABARAPL2 PFN1 RPL8 MED10 TUBB HNRNPA1P40 RELN RP11-219A15.1 MTRNR2L6 NGRN CYCS GSK3A TUBD1 ATP6V1G2 MRPL52 NME1 FIS1 PRDM8 USP5 ARC LGALS1 VSTM2L NPTX2 MZT1 HLA-B PCDH17 LINC00116 PRDX5 RPL38 UQCR11 ATP5J PGM2L1 CDK17 WBP11 RANP8 SH3RF1 PSMC1 BTBD1 CACNB1 ERH TMEM132D GPX4 NDRG3 TMEM14A WARS ANKRD30A RAB4A RAB1A VSTM2A RASGRF1 SQLE CAMK2D WWTR1 CNR1 RELL2 PTPRM ASAP1 UROS DACH1 RAB6A CLTA KLK5 SLC1A2 CTU2 SLC38A1 DEXI RPL10A WBP2 RAB27B TMEM141 ZBBX NAPA PAFAH1B2 MAGEH1 CAMKK2 ARL4D NHP2 LSM4 COX17 PRDX3 NKIRAS1 GJD2 CDS1 C1ORF115 MYEOV2 GPCPD1 RPL39 SLC8A2 PFKP ETS2 RASGEF1B CRIM1 COPS7A MYBPHL CD63 TXNDC17 BNIP3 ATP5H COL6A1 CPLX2 CLEC2L MMD LAMA2 HEY1 BCAT1 CD99L2 MSMO1 MRPS21 BRICD5 NAP1L5 TMEM120A MAOB PAX8 ATP2B4 SUCLA2 SLC39A3 TALDO1 GRIN1 RPL31 ALCAM ZBTB18 MTHFS MAGED1 PRUNE2 NFIA SGCD NTN4 ARHGDIG MYL6 ACAT2 LAMTOR2 DYNLL2 NEUROD2 NDP RPS10 EPHB6 ACTR6 MRAS CMAS AKAP12 PODXL NDUFC1 NEUROD1 TUBB2B COL5A3 POLR2K FBXO2 SALL2 STMN4 SELENBP1 SPOCK2 POLR2L MTUS1 TBR1 CLIP3 C16ORF13 NBL1 EDIL3 NDUFB10 MAP7D1 HSPB8 OSGEPL1 TKT HCN2 NDUFB2 UQCRC2 GSTP1 CHAC2 RPS27A SCN2B SYN1 TMEM151A TOX TM4SF1 DUSP4 FKBP4 PSENEN COX6B1 COL24A1 RHOB ANKRD20A11P ACTR10 COPG1 TCEAL5 FGFR3 CHCHD2 PSMD2 PANX1 COX5A ZNF547 UBE2E3 HN1 PPP2R2C PPP1R9B ITPR2 AP1S1 TLE4 CTXN1 FASN PPM1A PRSS3 RPS5 PDE1A MAPRE2 TMEM65 ID2 RP11-403P13.1 PEA15 UBE2M CDC37 MBOAT7 RANBP1 MRFAP1 KRT17P6 TMTC1 TCEAL2 SAMM50 PPTC7 C1ORF52 C6ORF1 SLC25A6 KLHDC3 THYN1 PVRL1 PTPRN2 UQCRC1 C2ORF74 COX6C TMEM147 GMFB WNT5A NDUFB3 HOPX CD59 CBLN4 LDHB SDHAF1 HNRNPH2 IGFBP2 CPLX1 ARL4C RPL3 NAP1L2 TMEM158 GADD45B LPPR4 LAMTOR5 NFE2L1 SUMO1 IDI1 PNMA1 NUDT21 FAM127A NDUFV1 TOMM7 OPN3 ATXN10 JOSD2 POLR2J EGFL7 ENPP2 PHPT1 HPRT1 KCNA1 NDUFA2 SYT5 CKLF CACNG3 NDUFB5 PLEKHH2 CDH13 CADM3 BAD GYG1 CYBB HMGB1P8 RPL12 ARL1 SSTR1 CYSTM1 ARHGAP29 RPS15 CRYM ETV1 KCNK1 CYBRD1 NNAT MPI ATP5G1 C14ORF132 NEFH FARSA GPX1 MAP1LC3A SCD ATPAF1 ALDOC ZNF343 AURKAIP1 TMEM150C SCD5 RIT2 ARHGAP35 EHD3 DMTN SNCG GPR171 PPP1R7 OLA1 GREM2 BRK1 SNX3 PLS3 OST4 TXN GLUL RPL26 RPS4X SNAP91 MT-ND5 CDH22 FLOT2 BDNF EIF1B C1ORF233 C1QL2 RHOA SLC7A1 UBB XX-CR54.1 PHYHIPL GPR6 KIF1A CTNNA2 ANXA6 GLO1 KCNF1 GDE1 IGSF21 CCDC184 BMP8A RPL35 ABHD8 LYSMD2 AGA KIAA1045 SNRPE TNNT2 BAG4 GSG1L DRAP1 MRPL20 TRAPPC1 ARF5 THOC7 MT-ND4L PAM ATP6V0E2 ASNA1 TMEM191A MBP C19ORF10 ATP6V1C1 LAMP5 EPHA6 TMEM35 SRD5A1 FRMPD2 IFITM1 PSMB3 SSTR2 RPL41 GABARAP SERF2 RPL36A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND1 RPL36A CHN1 ENC1 MT-ND4 SNAP25 MT-ND3 PPP3CA MT-CO2 MT-ATP6 PEBP1 SYT1 RTN4 NECAB1 MTRNR2L12 VSNL1 MAPK1 PREPL SNN SLC24A2 PRKCB TMSB4X LMO4 RPL37A PSAP SLC12A5 CDK5R1 OLFM1 RPL7 GNAQ IDS ELMO1 FAT3 ATP1A3 SLC9A6 CLSTN1 MAP1B MT-ND4L INPP5F CALM3 EFR3A GAP43 RTN1 ONECUT2 LPPR4 ATP6V1G1 EDF1 TMSB10 UQCRB MT-ND2 EIF4A2 TMX4 ATP1B1 SH3GL2 PRNP RPL26 PHYHIP GRIN2A CPLX2 NGFRAP1 SLC38A1 STXBP1 MAL2 NEGR1 RLIM PINK1 COX7C CLIP2 APLP2 YWHAB CREG2 MOBP CALM2 RPL41 PDP1 OAT ACTR10 SCN1B TSPYL1 LMBRD2 NCEH1 ATP5A1 MTCH1 AP2M1 PCMT1 BNIP3 MTRNR2L1 RPL13 APLP1 RPL8 SUSD4 PPP2CA IPCEF1 ACTG1 RPL38 PLCB1 SLC38A11 LINC00116 MAP2K2 OPCML YWHAG FGF12 TMEM70 DPY19L1 NAT8L RRAGA PNMA2 COPS8 RPL31 NDFIP1 C11ORF96 ATP5G1 CFL1 SNCA ATP1A1 DMTN RGS12 SCAMP5 C1ORF115 TOMM20 NDRG3 CH17-53B9.2 MT-CYB MRFAP1 CTNNB1 FABP5 YAF2 SYN2 CSDE1 DIRAS2 GDI1 KCNC3 MLF2 ATP5E PEA15 CHCHD2 RPL32 MAP4 RAB6B FXYD6 PTGDS TSPAN7 GPM6A SUB1 SEZ6L PCP4 B3GNT1 ATP5G3 ATP6V0B PRKAR1B NFIA ERH MAP2K1 SULT4A1 NEUROD1 DNAJC5 PHYHIPL CFH DNAJC21 ARF5 TBC1D15 ALDOA RPL13A ESCO2 ZNF385D RAB3B SYTL2 ARFGAP2 PCDHGA10 PCDHGA5 PCDHGA6 TF HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 SYT1 CALM1 SNAP25 RAB3B PRNP CALM3 YWHAB SV2B NECAB1 RTN1 CALM2 BIRC5 GDI1 RP11-111M22.2 MAST3 TBR1 RTN3 HSP90AB1 MAP1A SYTL2 FTL GYG1 KLC1 SNCB PAK1 TSC22D1 UBA1 TMEM130 MAPK1 LANCL1 RELN BEX1 MT2A ETFB EIF1 MT-ND4 MED10 ARL6IP1 PI4KA ATP1A3 FAIM2 GPM6A DKK3 KIF1A ENC1 RGS4 TBCB DPP6 PPP1CB MT-CO1 RPL38 GRIN2A PHYHIP TRMT112 RCAN2 PEA15 HSPB8 CCK PIK3R1 MAPRE2 RPL13 SCAMP5 THY1 PPIA NRGN DCLK1 PSAP PJA2 NAP1L2 MMP24-AS1 ATP6V1B2 ATP1B1 PTPRN NDRG4 ATP2B2 SLC9A6 SCN3B VSNL1 ITM2C NAT8L PRKCB PCDHA10 PCDHA4 CDC37 PLD3 UCHL1 WBP2 ARL1 SPARCL1 FTH1 LIN9 LYNX1 SLC17A7 RAB5C PET100 LMBRD2 KRT17P6 FASN ENSA CHP1 SYT3 PRKACB NCAM2 LDHB C1ORF115 MZT2B FAT3 MLLT11 ARFGAP2 CDK5R2 HOPX LL0XNC01-16G2.1 SIRPA VAMP2 BASP1 HSP90AA1 ZBTB18 PPP2R2C RPS12 OPA1 ATP1A1 ATP6V1C1 APLP1 SYT13 STMN1 COX5B SLC38A11 APP FAM84A KIAA1045 SYNJ1 TOMM20 SLC7A5 IL33 UBE2E3 PHPT1 PEX5L CKB MPP1 GLIS3 GRIN1 COMMD6 SERPINE2 CAMK2G DPY19L1 FBXO2 MT-CO2 ENOPH1 YWHAG KCNAB2 OPCML SERPINI1 ARHGDIA PCDHGA5 MTPN MRPL33 PPP2CA COX7A2 RPL12 ATRN CLU SERINC1 ADSS RRAGA EPB41L3 PREPL RPL7 NDUFA12 RTN4 CORO2B GPR116 FAM131B NGFRAP1 GUCY1B3 PPP2R2B CHMP4B ATP9A TSPYL1 RRM2B MARCKS ZCCHC24 OR6D1P SLC12A5 PPP3CA TUBA4A SNCA WASF1 PPP2R4 PCSK1N RPL37A RPS28 DNAJC5 SYNGR3 UQCR10 ATP6V1E1 DYNLL1 SLC8A2 YWHAH FXYD6 MT-CO3 CREG2 MTCH1 AP2M1 NFE2L1 RPL3 ADAM23 USMG5 SCN1A MT-ATP6 ATP6V1A SARAF GABARAP ALDOA KRTAP5-7 TCEAL3 HCN1 OCIAD1 PPARGC1A ATXN10 PGRMC1 PSMD12 MT-CYB RPL41 COL11A1 GDA PPP3CB GRPEL1 KIFAP3 ATP6V0E2 TOMM22 DMTN NDRG3 LIMK1 CSDE1 NREP ATP5J2 GAPDH EPS15 STX1A ATP6V1G1 CAMK4 NPTX1 YIPF3 RAB11FIP5 COX7B SMS NDUFA4 COX6A1 CADM2 SCG2 TMX4 PDE1C PNKD TMEM14A DPYSL2 SLC39A10 AP2B1 LINGO1 SPRN PTPRZ1 NPTXR ARPP19 OAZ1 NDUFA13 PNMA1 CCDC25 STMN2 ACTB RNF208 TUBB3 GSK3A RPL6 ATP6V1G2 CYB5R3 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 MTRNR2L1 MTRNR2L12 MTRNR2L6 PEBP1 SYT1 CHN1 MT-CO2 MAP1B RTN3 MT-ND1 SNAP25 FAIM2 AC244489.1 RTN1 RTN4 ATP1B1 CADPS2 MT-CO3 GAPDH HSP90AB1 PPP1CB PARM1 MTRNR2L8 SYTL2 ZNF385D RAB3B ESCO2 RAB3IP GPM6A ENSA NDUFB7 PINK1 TOLLIP SLC9A6 MAPK1 CTNNA2 SPTBN1 MT-ND2 B3GNT1 TUBB2A AP3S1 YWHAB FKBP1A SYT11 PEA15 SULT4A1 PNMA2 NREP PPP3CA RAP2A PEX5L ATP5I VAPB NGFRAP1 EIF4A2 NAP1L2 TCEA2 TMSB10 PPP2CA ELAVL2 YWHAH IFI6 ZBTB18 TMSB4X ATP6V0B GDI1 MAST3 CALM2 TOMM20 HS6ST3 VAMP2 NAT8L KIF21A CARTPT C14ORF132 CLU PEG10 DMTN BEX2 MYL6 MYBPC1 SUMO2 SSBP3 KCNH5 RPL18A HINT1 TGOLN2 PREPL CRIP2 ZFAND5 ARF3 NAPB H2AFZ ASAP1 COL5A3 ARHGAP35 HSP90AA1 FTH1 HIST1H2AC PSMA7 ITFG1 GNAQ WSB2 NARS ATP2B4 RHBDD2 RPL23A APP PPP2R1A PHYHIPL STMN1 CHL1 ACTB PI4KA SH3GL2 BCAP31 EPB41L3 BCL11B CBLN4 CALM1 SPOCK1 COX7B SUMO1 DCLK1 USMG5 C14ORF2 PPP3R1 SCN1A TSPYL1 EFR3A SERINC1 MYL6B ACTR1A RAB2A RPL39 BSCL2 CFH NUDT4 RP11-20I23.1 ARL6IP1 ATP6V0C IDS GTF2H2C_2 RPL7 TBC1D15 DNAJC21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 CHN1 MT-CO3 SYT1 MT-CO1 CALM1 NECAB1 MT-ND2 CCK PPP3CA SYTL2 RAB3B TUBA1B MAP1B MT-CO2 VSNL1 NRGN MT-ND1 ONECUT2 ACTB PRNP APP ARFGAP2 ZNF385D BEX1 MT-ATP6 RTN4 SCN1A RGS4 TMA7 MTRNR2L12 RPL3 ISCU ATP2A2 SKP1 MAPK1 ATP1A1 NR1I3 IDS ARL6IP1 PPARGC1A DYNLL1 RHBDD2 YWHAZ ARF1 CX3CL1 UBL5 KLC1 TOMM20 KCNAB2 PAFAH1B2 TSPAN7 CHL1 ATP1B1 ATP2B2 SYT11 FGF12 SERINC1 TSPYL4 PHYHIP PRKAR1A ATP6V1C1 IPCEF1 RPS4X FAT3 ITM2B DKK3 APLP1 SLC17A7 NCAM2 SERF2 HSP90AA1 TMSB4X CABP1 PCSK1N PIK3R1 SCN3B GPM6A CALM2 SYNGR1 ELAVL2 HSP90AB1 PNMA2 SARAF NAT8L CALM3 SPARCL1 BSN EIF1AX PRKCB TMX4 OXR1 EIF4A2 HNRNPA1P40 TUBD1 TLE4 TCEAL5 SLIT1 STMN4 GRINA OAZ1 PNMAL1 TOMM22 SNX3 LAMP5 S100A6 CA10 PTMA TPGS2 PGRMC1 JUN TRHDE TBCB NDFIP2 PSMB7 PSAP ATP6AP2 ID2 PSMC5 MARCKS LINGO1 ZMAT2 KCNA2 GAPDH THY1 ACTR6 GAP43 GABRA1 DDAH1 PEBP1 FTL MYL12B NRCAM GPR56 CERS6 ATP5F1 PRDX1 SERPINI1 SYN1 CTNNA2 NEUROD1 GSKIP ENC1 ATP5A1 STX1B D4S234E PFDN4 APEH UCHL1 ACTR1A ARL8B NPTN ROBO2 DYNC1I1 RCAN2 ACP1 SPOCK1 ATP9A ARF3 SELM ATP6AP1 EGR1 MT-ND4L TRIM37 STXBP1 ENO1 EPS15 AHNAK2 HSPBP1 LYSMD2 NIPA1 PRPS1 ELAVL4 HOPX GNAQ ARL6IP5 WDR47 RPL13 ZFAND5 RP11-111M22.2 APLP2 RPL41 FILIP1L GABARAP YWHAG CSDE1 NAP1L2 EPHB1 C14ORF2 RAB3IP GUCY1B3 SSBP3 RAB4A MT-ND5 MAP2K4 FXYD7 LIG1 RAB3A RTN3 YWHAH PEX5L SLC24A2 MTRNR2L1 GABARAPL1 SERINC3 SKAP2 BSG LPPR4 TSPYL1 PSD3 DNAJB6 RASGRF2 CPLX1 CLU MRPL47 LANCL1 ARPC5L APBB1 NUDT21 NELL2 AK5 CPE PJA2 SNCB HSPB8 CFI GPATCH4 LMBRD2 VAMP2 GNG2 SCAMP5 NDUFB2 RAD23B RRM2B CRKL PREPL TEX2 VSTM2L SRP9 NDFIP1 TMEM59L PPP3R1 PCDH17 PRKACB CLSTN1 PSMC3 COX7C SNAP25 OPN3 LDB2 ENO2 SH3GL2 TMOD2 CD59 VPS35 CBX6 STMN2 NRN1 SLITRK1 SUB1 CORO2B FXYD6 NBL1 CAMK2G SNAP91 PLD3 ATP6V1B2 PODXL RTN1 ATP2B4 DNM3 PAM UBA52 CLTB WASF1 IGSF21 HOMER1 CAPZB CYFIP2 KCNK1 MT2A CAP2 REEP5 WBP2 SSTR2 UQCRC1 EDF1 FAM19A2 ITM2C IDH3A LGI3 COL24A1 MT-ND3 SGK223 DPYSL2 MYO1B MYH7 PPP2R2C SOD1 GLRA3 OLFM1 PLCB1 FAIM2 CPLX2 FTH1 NSF RPL17 RPL17-C18ORF32 PLEKHD1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ND4 SYT1 SNAP25 MT-ND3 ENC1 CALM2 MT-ND2 RTN3 MT-CYB MTRNR2L1 MT-ATP6 MT-ND1 CALM1 ATP1B1 CHN1 RTN4 MAP1B NRGN GPM6A VSNL1 CLSTN1 YWHAG GABRA1 PREPL GAPDH CLU TSC22D1 GDI1 SPARCL1 FAIM2 NECAB1 PRKCB MTATP6P1 APP ZBTB18 MTRNR2L12 MT-ND5 CALM3 VAMP2 EIF4A2 PHYHIP CADM2 TMSB4X RGS4 ARPP19 CNTN1 ATP2B2 CAP2 PRKACB ENO2 PPP3CA RTN1 CPE NAP1L2 CDK5R1 MTRNR2L6 CREG2 RHBDD2 PIK3R1 NPTXR YWHAB PRNP GAP43 CABP1 MTPN NAP1L3 PJA2 BEX1 FKBP1A DYNLL2 PKM RCAN2 SLC22A17 YWHAZ SERINC1 STXBP1 MORF4L1 TSPAN7 NDRG4 ATP1A3 PCDHA4 TBC1D15 ITM2B DCLK1 COX6B1 SLC39A10 ARF3 YWHAH TERF2IP ARL6IP1 EPB41L3 NEFL SNRPN ACTB CCK PPP3CB SEPW1 PNMA2 PNMA1 BASP1 SERPINE2 FXYD6 INPP5F OXR1 AK5 CADM3 WASF1 MTRNR2L8 OLFM1 JUN ZFAND5 ATP1A1 NGFRAP1 RPH3A PRKAR1B STMN2 SLC12A5 OPN3 MAPK1 RBX1 TMA7 KCNAB2 TSPYL1 TMEM59L ELMO1 SERPINI1 SARAF COX5B SLC6A17 SYT11 ZNF365 NREP LDB2 BSCL2 COX6A1 VPS35 NAPB VDAC1 CBLN4 ATP5B TMEM130 TMX4 COX7A2 BSN CX3CL1 NPTX1 NAP1L5 KIF1A PFN2 APLP2 SCN3B UBQLN2 PPP1CB OPCML STMN1 SLC24A2 HSP90AA1 NCEH1 MAST3 TCEAL5 NGRN IDS HMP19 KIF5A CAPZA2 RP11-111M22.2 ALDOC PPP2R1A C1ORF115 BCAP31 SCN2B RPS15 GNAQ ADORA1 HMGCR ATP5E MT-ND4L EIF1AX RPS27A GRIN2A DHCR24 PGK1 ATRN FAM84A PSAP GABARAPL1 TESPA1 CAMK2G HSPB8 CAMKK2 PSD3 TUBB2A CYFIP2 SCG2 PRKAR1A WBP2 GORASP2 APLP1 KIF21A PGAM1 GUCY1B3 WFDC3 DNAJB6 MT3 PPP2CA TOMM20 PRDX3 DCTN1 JUND SELM SPOCK2 PTK2B TUBA4A POMP SOD1 SV2B NELL2 RPL35 POLR2I MAP2K1 UBC TMEM65 OPA1 NSF ONECUT2 SERP2 PDP1 ATP2A2 KIAA1045 FUNDC1 TUBB4A LANCL1 RAB6B TOLLIP ATP6V1E1 PCSK1N TMEM155 THY1 CAPNS1 TAGLN3 RABAC1 CHL1 ATP6V1A UBE2V2 PLCB1 NDUFA13 PCP4 C3ORF80 CDK14 CDC42SE2 TUBA1B UQCRC1 CEND1 OAT SNX3 FAM174A RAB1A SLC9A6 B3GNT1 GALK1 MANBAL HOPX TCEB2 ADD2 MDH2 RAPGEF5 FASN GOT1 RPL15 RAD23B CKB OAZ1 GRIN1 ATP6V0E2 USMG5 COX7A2L PEX5L C14ORF2 COX4I1 ACTR10 NAPA CRYM SSBP3 PTGES3 CLTC KCNV1 ATP6V1B2 DYNLL1 MAP1LC3A GDA HSP90AB1 ETS2 FAM3C RPL18A FSCN1 PPIA FTH1 TGOLN2 NDFIP1 SERINC3 CDH13 SCOC PLD3 AP2S1 ARHGAP35 PAFAH1B2 FAM127A KLC2 ATP6V0C RP11-20I23.1 BIRC5 ZNF385D RAB3B SYTL2 MTND1P23 PID1 NDUFA11 MYL12B CLPTM1 NDUFB5 ARF1 HPCA TMSB10 COPG1 SLC25A11 DUSP1 NPTX2 PRUNE2 TBC1D7 DUSP4 C20ORF24 FAM198B GHITM LCN12 KLHL12 NDUFC2 ATP5F1 PPP2CB WSB2 LMO4 SIRPA ARFGAP2 DGUOK FBXL16 RPL8 SLC8A2 SYT4 PTMA TUBB4B C14ORF132 NDUFB2 SLC1A2 OCIAD1 TMSB4XP4 UROS TCEAL7 POLR2M LINGO1 GLUL ATP5A1 PPP2R2B LINC00087 C16ORF13 HBQ1 ELOVL7 TMEM11 PGM2L1 FAT3 TXNDC17 LAMTOR1 FAM134A MDH1 COPS8 PIN1 AP2M1 FAM96B PSMD2 DYNLT3 RPS4X MFSD6 PAM SULT4A1 NDUFA4 RPS28 MRPL55 ATG101 DPYSL2 MFN2 RPS26 PCDH8 ATP5I ERH PFDN4 HOMER1 ANO3 PSMB7 PPM1A WASL ARL8B DPP6 RP11-195F19.5 RAP1GAP2 REEP5 PPP2R4 PRKCG RAB3C NFIA MAP2K4 KLHDC3 STUB1 ACTR1A LINC00116 RNF11 UBE2E3 RASGRF1 SH3BGRL2 AZIN1 FBXW11 ATP6V0B APBB1 VSTM2L EGR1 SNCB TPT1 PET100 ADCYAP1 SRP14 AQP4 KCTD12 SYNJ1 ECM1 NDUFA5 PSMC3 BAG4 PSMD8 BCAT1 DKK3 ASB13 CPLX2 WDR47 FAM163B CERS6 RAB3A AES COX7A1 GTF3A BANF1 ARL6IP5 HSPA8 PHYHIPL SEMA3C C1ORF233 NRSN2 TPGS2 RHEB MAGED1 ABHD14A SLIT3 ATPAF1 LMO3 PGRMC1 SGK223 RRAGA BHLHE40 ZNF574 COL24A1 RAP1GDS1 CHMP5 GPX4 ITFG1 EFR3A RHOB MBP RAB2A LMBRD2 HSPBP1 UBA1 NGEF TUBB3 CRIP2 IGSF21 PTPRS NDUFS5 WFS1 SNAP91 KCNF1 ATP6V1F VDAC3 PEA15 PPP1R7 NPM1P30 MMD PCBP1 EIF1B STK39 AKAP12 RPL41 SYNGR3 LDOC1L SNX10 NTN4 HCN1 CCDC115 DMTN C4ORF3 TRMT112 CFL1 GSTT1 TPRG1L CHGB ABHD8 FAM219A TPI1 BMP8A TUBA1A MLF2 CLSTN2 COPE LPPR4 ATP5G3 RPL3 NUAK1 TSPYL4 SERPINF1 RAB7A NBL1 FKBP4 UBE2N ARHGDIG SUMO2 C1D RANBP1 HIGD1A FGF12 ATP6AP2 EID1 UBE2QL1 MTCH1 RAB6A CAPZB UQCR11 TCEAL2 SKAP2 LL0XNC01-16G2.1 NDUFB7 AP3S1 CD99L2 MAPRE3 DEXI ACTG1 PI4KA NEFM MAPK8IP2 UCHL1 HINT1 MAL2 UQCRH INA MMP24-AS1 CCDC85B COL11A1 MBOAT7 PCDH17 PRDX2 SYN2 PEG10 SCN4B ADAM23 FAM162B PEBP1 CAMK4 PNMAL2 PAK1 CA10 RPL17-C18ORF32 CPLX1 SLC17A7 REPS2 UBE2D2 H2AFZ LMBR1 ANXA7 UQCRFS1 TMEM70 USP5 TMEM158 ZBBX ITPR2 PFN1 RPL31 PCMT1 NARS UQCRB DCTPP1 MAP4 SYN1 SMIM13 TPD52 SOX9 C1ORF52 RPL17 ATP2B4 RPL11 MAP1A SH3BGRL3 GPCPD1 SNN MAGED2 RAN NEGR1 FTL RPS6 P2RX6P NDFIP2 RIT2 UHMK1 CDK17 BSG DMKN TMEM35 BEX5 CLIP3 SCD5 BNIP3 SEZ6L2 NEFH COX8A ENO1 ID2 RPL13A SCAMP5 ELAVL4 RPL32 MFGE8 DNM3 MTX3 UBB RPL21 RNASEK-C17ORF49 EPHB6 ARF5 TUBB ALDOA ATP6V1G2 GTF2H2C_2 AC244489.1 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO2 MT-CO1 MT-CO3 SYT1 RTN4 SYTL2 CALM2 ARPP19 CALM1 RP11-111M22.2 RAB3B CHN1 HSP90AA1 PRKACB STMN1 MT-ND2 MT-ND4 CADM2 PRNP MT-ND3 PSD3 UQCRB CKB RPL31 RPL38 YWHAG PPP3CA THY1 CALM3 RPS28 VSNL1 ATP2B2 ARL6IP5 YWHAH OCIAD1 TBC1D15 SCN3B LINC01296 PRKCB NGFRAP1 RAB6B ATP1B1 RTN1 NDUFB1 NRGN ENC1 SLC30A3 MAP1B UCHL1 TMSB4X ACTB DPYSL2 OLFM1 RPL26 NDUFA4 PJA2 NPTX1 TMSB10 NFE2L1 GDI1 STXBP1 BEX1 NCAM2 SYT4 SYN2 NEFL ITM2B KIF1A LINC00086 WBP2 RPL37A TSPYL1 NRN1 RPS12 TESPA1 HMGCR RAB3C TUBA1B CCK MT-CYB PKM ENSA TUBB HNRNPA1P40 ARFGAP2 CNTN1 SLC17A7 SERPINI1 GABRA1 FAT3 ABHD14A PLCB1 CD63 PI4KA PGRMC1 KLHDC3 CDK5R1 RPS3A AZIN1 SV2B TERF2IP CDH8 NRCAM RPL41 ENO2 RTN3 NPTXR ATP2A2 COX4I1 TMA7 PDP1 FXYD6 SLC22A17 PPP2CA PREPL APBB1 RAB6A DMTN RPS15 EFR3A KCNMB4 SLC12A5 CPE ZBTB18 SAP18 RAB3A LINGO1 GDA GAPDH AK5 SPARCL1 DYNLL1 MAPK1 PEBP1 NPTN MBOAT7 PHYHIP ATP1A1 LPPR4 PIK3R1 OAT RNF11 TUBB2A GRIN2A ATP5A1 ZNF385D PPIA RP11-20I23.1 ATP6V0C PGK1 EPB41L3 CHL1 PINK1 VDAC1 EIF4A2 UBC FAM19A1 CSDE1 COX5B FKBP1A LMBR1 DPP6 MTCH1 SULT4A1 UQCRQ SYT11 BRK1 SKAP2 DKK3 TBR1 PIN1 ELAVL4 CAP2 RPL12 BSN MTPN ATP5J PSMC5 BEX4 EIF1AX GABARAPL2 NDUFS5 TCEAL3 RGS4 C16ORF13 MT-ND5 ANXA7 SIRPA TCEAL5 KCNAB2 DYNLT3 SSBP3 SRP14 NDRG4 PFN2 BEX2 RAB40B TPD52 ITFG1 NDUFA2 TSPYL5 DCLK1 RHEB REPS2 RHOA NDUFA13 PPP2R2C RPL18A OR2M4 NCOA4 MT-ND1 C19ORF70 RPS6 RPS10 DRAP1 SERINC1 CLTC CCDC183 KLC1 MAST3 OXR1 NUDT4 ACTG1 IGSF21 RPL7 SCD5 FBXL16 ZWINT NECAB1 PTPRT ATP6V0E2 GPM6A SLC39A10 KIF5A NDUFB2 EPHB6 IQSEC1 C14ORF132 NNAT HMP19 GYG1 TSC22D1 ATP5I GPR116 MDH1 DYNC1I1 SYNGR1 STMN3 GUK1 VAMP2 USMG5 SERF2 LAGE3 RPL13A NAP1L5 DCTN1 RPS27A NEGR1 CFL1 RPL36A MAPRE3 RPL8 ENO1 TMEM230 RAD23B UBE2QL1 TMEM191A MCHR2 SERPINE2 NREP ZFAND5 ATP1A3 HINT1 CABP1 NDUFA11 TOMM20 LRFN3 RPL35 ACTR1A KIFAP3 ZNF365 ANO3 ARL6IP1 GABARAPL1 ALDOA NGRN RPS2 TSPAN7 NUDT21 LINC00116 TUBA1A PRELID1 DNAJC5 ADORA1 CTNNB1 C1ORF56 APP TUBB4B LMO4 NWD2 QDPR HRK NDFIP1 EGR3 SYT5 TCEB1 H2AFZ RP11-632C17__A.1 CNR1 CDK17 CHMP4B SMYD2 B3GALT2 EGF SPRYD3 BAI2 CA10 GHITM SYNPR ASAP1 STMN4 VDAC2 C14ORF2 PSAP DBNDD1 CACNG3 PDE1C PNKD PRKAR1B SPARC ALDH1L1 FTH1 BANF1 OR6D1P MANBAL CIAPIN1 SCAMP5 ETS2 NDUFA4L2 RCAN2 DNAJA1 C7ORF50 PRKCE MARCKS RHBDD2 SPTBN1 ACAT2 ROBO2 TPRG1L CLIP2 GRIN1 SLC8A2 APLP1 CNTNAP3 BNIP3 UBE2D2 MFSD6 SEZ6L2 NCDN MAPK8IP2 ATP6V0D1 KIF21A CAMK4 AP2B1 RFK RPS4X CDC42SE2 ACTR10 PLEKHG1 COA4 CLIP3 PLS3 RTN4R ZBBX STK24 MAP1LC3B WDR47 ATP6V1B2 NDUFB8 SNX10 AP3S1 FIBP CBX6 GPX4 TCEAL7 RAN PPP2R1A PEX5L SNN PCDHGA5 CYC1 BAG4 EIF1 PRDX3 WBP11 DGKG MAP2K1 UBA1 VSTM2A CORT RAP1GAP2 GUCY1B3 THYN1 INPP5F BCL6 SNCG HSPA4 PET100 PTGES3 ELAVL2 APLP2 COMMD6 GABPB1 WASF1 MRFAP1 SYNGR3 YDJC BASP1 VDAC3 MMD FAM19A2 NRSN2 RASL11B SELT HSP90AB1 PRKD2 TOMM7 TLN2 C6ORF1 GPR158 SMS GLO1 HMGCS1 CAB39 ALDOC TUBB4A ENOPH1 GSK3A TSPYL4 RPL32 MAPRE2 CALB1 SLC38A1 SUMO3 ATXN10 KCNH5 GPR171 NGEF ARHGDIG DIRAS1 SYT17 NDUFV1 FILIP1L AES NUAK1 PNMAL1 MT3 HDLBP MAGEH1 PIK3C2G LRRC53 ADD2 CHMP5 NEFM FAIM2 MSMO1 SNAP91 IQCK SLC9A6 DIRAS2 PRPS1 GLRA3 MYEOV2 COL11A1 NAPA MAP7D2 TMX4 PSMD2 PPM1A CHP1 WARS UROS POLR2M CRIP2 LMO3 EID1 RAB7A THSD7A COL5A2 PPP1R9B ISCU PLD3 PAK1 PDCD5 CD59 RPL13 MTATP6P1 NDFIP2 MAP1LC3A FAM127A PSMA7 PCSK1N POLR3H MB21D2 PDE1A PTGDS WASL CTBP1 SYNJ1 TMEM117 NME1 C19ORF43 DISC1 NELL2 ETV1 CTNND2 TBCB MRPL52 CLSTN1 RAB9A FAM174A ATP5J2 STX1B ARSE MT1E GRINA PTMA KITLG SNRPN EHD3 SUMO1 IDI1 RPS19BP1 EGR1 EGFL7 UQCR11 ATP5E LGALS1 GNG3 DNM3 RPL39 SYT13 DNAJB6 YWHAQ PRDX1 COX6C TMEM151A ERICH2 AP2M1 PPP3CB C16ORF93 MRAS PRKAR1A CCDC124 KIF7 MTRNR2L1 KCNC2 TRIM37 HN1 SRM FAM84A GABARAP SNCA YWHAZ SARAF YJEFN3 ACP1 NDUFS6 MORF4L2 MRPL55 PRKCG VPS35 SRD5A1 ARL8B JAKMIP1 TMEM147 ATP6AP1 ATP6V1G1 MRPS21 NCEH1 CMAS BSG MT-ATP6 TMEM59L NAP1L3 CA11 NHP2 RAB11A RASGRF2 AKAP12 MYL6B SDCBP SQLE TOMM70A PRDX5 ATP2B4 NIPA1 TBCA STMN2 NDUFB11 EDF1 STRAP COX7C IDS FBLN2 ARPC4 CHRDL1 RHOB ATP6V1F AP1S1 PPP2R4 PFKP SYNPO UHMK1 SLC24A2 MPC2 SNCB PARM1 PPP3R1 RAB1A C9ORF16 HPRT1 ARL1 CREG2 MLLT11 KCNAB1 SMIM13 LYNX1 EIF4G2 RPL3 MTRNR2L12 GUCY1A3 PPP2CB STX1A VSTM2L SEPW1 BTNL9 COX7A2 IPCEF1 DNAJC6 GPRC5B CLU RPL23A COX17 RAP2A CTSD CAMK2N2 MYOM2 RPL17-C18ORF32 C18ORF32 RNASEK-C17ORF49 ATP6V1G2 NSF BSCL2 ARF5 TUBB3 AC244489.1 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 ATP1B1 RTN4 RPL37A GPM6A STMN4 RPL13A PREPL MT-CO3 CHN1 BEX1 CALM2 GRIN1 RPL41 VSNL1 CADM2 SYT1 TOMM20 YWHAZ CALM1 RTN1 SERINC1 PPP3CA RTN3 SEPW1 RPS27A SUB1 MT-ND4 KIF21A OLFM1 TMEM59L TAGLN3 RPL38 RP11-219A15.1 RHBDD2 SCOC SYT5 RPL31 RPL26 VAMP2 MT-ND2 RPL21 NGEF NPTX1 PRNP REEP5 TPI1 EIF4A2 TMA7 NDUFA13 RPL7 BTBD10 TUBB2A CLTC OPN3 GAP43 SLC38A11 CYCS SLC22A17 RAB6A UQCRB NDRG4 RP11-111M22.2 RPL17 UQCR10 DKK3 UQCRH CFL1 CADM3 CHL1 APLP1 IDH3A NUAK1 NDFIP2 ATP5J CPE NRCAM THY1 HPRT1 TSPAN7 ATP6V1C1 GNAQ DCLK1 MAPK1 PIK3R1 STXBP1 SKP1 RPS4X CNTN1 RPL3 ACTG1 ENC1 C1QL2 ATP6V1A TGOLN2 PSAP RGS4 RPL13 TM2D3 MLLT11 ITM2B ANXA7 FAT3 TSC22D1 PACSIN1 CDC37 RAB40B HMP19 MAP1B NRGN ATP2B2 NPTN PRKACB AP2M1 PJA2 ZBBX ALDOA BNIP3 ATP6V1B2 NEFL MT-CO2 APP MRPL51 TMSB4X RPS15 PRKAR1B DYNLL2 DPP6 SIRPA PNMAL2 PCP4 ENO1 NAT8L GRIN2A CA10 UBE2V2 NR1I3 GABARAP TMOD2 CLDND1 CYFIP2 GRINA COX7C MT3 MBP NEUROD2 CHAC2 LMO3 ACTB FAM163B VDAC1 BEX5 CMPK1 CHCHD2 PEBP1 WDR47 SCG2 TSPYL1 STAG3 HIGD1A CPNE8 AP3S1 QDPR RAB11A SLC30A3 FTL EFR3A TMSB10 EIF4G2 NDUFB10 BSCL2 CPLX2 PNMA2 TUBA4A MMD HNRNPH2 CCDC144NL HS6ST3 RAN CDH13 CNTNAP5 UBE2QL1 GTF2H2C_2 AP2S1 SYNJ1 GSG1L MTPN MSMO1 PRKCG CTXN3 CHMP5 CLSTN1 PPIA SERPINI1 PPP3CB NMNAT2 SLC8A2 HAPLN2 DNAJB6 CREG2 KLC1 TBR1 SPOCK1 MTCH1 RPL12 CNTN6 ARL6IP1 CA11 COL5A3 OXR1 ARPP19 GABARAPL2 MT-ND4L EID1 CYP26B1 PTPRN GNB1 ATP6V1F RAP1GAP2 SH3GL2 COX7A2L THSD7A SLC12A5 NPTX2 FAM219A MAP2K1 USP5 CTC-575D19.1 OCIAD1 CXCL14 LZTS1 RSL24D1 TPT1 SARAF ZMAT2 CCK SYN1 FAM19A1 MDH1 RBX1 GDI1 WBSCR17 TUBA1B RAB7A WSB2 PVRL1 NECAB1 NDUFA12 NRIP3 MYL12B PEA15 NCEH1 MRPL20 CAMK4 HMGCR EIF1B FKBP1A PFN1 RPL39 HINT1 SNRPN STAG3L5P ELMO1 SCN3B CKB CAP2 KIFAP3 PNMA1 RAB2A SNAPC5 ARL6IP5 LDHB SH3BGRL3 ACTR6 GABARAPL1 ATP6V0B ATP5O RAB6B TRIM37 YWHAG GOT1 C10ORF54 TPPP NAP1L5 ATP5E PHYHIPL VPS35 LANCL1 ATP4A PGM2L1 ZFAND5 SYNGR1 ADAM23 ROBO2 MTRNR2L1 SMS MAP4 SULT4A1 UQCRQ REPS2 MORF4L2 RPL23A NDUFC2 NOV FAM3C RP11-20I23.1 PSMD8 C4ORF3 NEFM ATP2A2 BASP1 LRRIQ1 SELT POMP ATP6V0C COX6A1 C1ORF52 MYEOV2 BIRC5 NAP1L3 COX6C PEPD RPS3A GAPDH PKM CDH22 GOT2 STMN3 UBE2E3 NDUFA11 TBC1D28 HSP90AA1 RFC4 IGSF21 RPS6 NEUROD1 PFN2 MT-ND5 RPS2 COX7B MRPL37 HBB NAP1L2 NGFRAP1 ZBTB18 RPS12 TCEAL2 SYT3 CABP1 DIRAS2 POLR2K NDUFA4 AAMDC MYL6 ATP1A1 ATP6AP2 MAST3 PRKAR1A CAB39 ATXN10 PSD3 CCDC85B RHEB TMEM130 GMFB SNCB PI4KA FSCN1 SLC25A4 FBXW11 TMEM160 NDUFB7 OAT TMEM155 CHP1 FILIP1 CSRP2 RPS28 ARL2BP STX1A JUND ARF3 HSP90AB1 UTRN COX5B OPA1 VDAC3 IQSEC1 COPS8 AZIN1 SPARCL1 ZNF385D SYTL2 RAB3B TBC1D15 SLC26A10 OR6D1P IDS NGRN SERF2 TUBB3 MTRNR2L6 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 SYT1 MT-CO3 MT-CO2 MT-ND4 ATP2B2 SNAP25 NRGN MAP1B TSPYL1 ATP1B1 SERPINE2 MT-ND3 ENC1 MT-ND1 TOLLIP CALM2 PRNP SLC17A7 ACTB CALM3 VSNL1 NPTN MT-ND2 MT-CYB ZBTB18 PJA2 FAIM2 IPCEF1 MT-ATP6 GPM6A CNTN1 WASF1 MORF4L1 PRKCB NDFIP1 CALM1 CCK MTPN SERINC1 GDI1 RTN4 MTRNR2L1 PLCB1 KLC1 TMX4 SYN2 PTK2B HOMER1 OCIAD1 PGAM1 ZFAND5 EIF4A2 ARPP19 RAB3B RAB11A MTRNR2L12 SNX3 NCAM2 AP2M1 GAPDH PPP3CA SPARCL1 NRCAM FKBP1A MSMO1 LMO4 KIF21A LMBRD2 PPP3CB ATP1A1 BIRC5 HNRNPA1P40 RTN1 ATP5B GSK3A NCDN ARL6IP1 NGFRAP1 SYT4 TUBB4A RP11-195F19.5 PKM GNG3 SYNGR1 PNMA2 ITM2C VAMP2 DPP6 TBR1 ENO2 NAPB TMSB10 PRUNE2 TPD52 CA10 CADM3 ASAP2 CDK14 ACTG1 PHYHIP EHD3 SYT13 STMN2 APLP2 NDFIP2 COPG1 ELAVL4 COL5A2 CCDC85B GRIN1 DNAJC6 PCSK1N RGS4 ARF3 CKB WBP11 PRDM8 ZCCHC12 HSP90AB1 NAP1L3 MTRNR2L6 SCD5 YWHAH LMO3 PIK3R1 PREPL PRKAR1B TPI1 BSG FTH1 SYNPO NECAB1 ATP1A3 DMTN CAMK2D ACOT7 TERF2IP ATP6V1E1 SERPINI1 PSD3 APP MARCKS GABRA1 NFE2L1 TMTC1 TUBA1B RTN3 ANO3 PPP2R4 ATP9A PIN1 YWHAG EIF1B RAB5C TUBB2A CD63 UCHL1 BASP1 CDK5R1 SCN1A PCDH17 CFH ARFGAP2 RP11-111M22.2 NDUFA5 SCN2B SEPW1 IDI1 PI4KA CTSD GPRC5B DCLK1 FJX1 RAP1GAP2 ATP6V1F PRDX2 NGEF ARHGDIG MT-ND4L ATP6V1A SPRYD3 YWHAB PAQR8 FAM127A BAI2 MFSD6 BEX4 MPC2 MDH1 DIRAS2 CTNND2 VDAC1 OAT ARHGAP35 NAT8L ATOX1 TUBA1A TSPAN7 MAPRE2 GLUL APLP1 CPE GNAQ MOBP DYNLRB1 SKAP2 PPTC7 BSN CLTA B3GNT1 ATP6V1C1 COL12A1 TCEAL2 SLC25A4 UBA52 RAB40B RLIM NDUFC2 DUSP1 SLC8A2 MTATP6P1 PCDH19 RAB3A PPP2CB BHLHE40 C1ORF95 COX17 CACNA2D2 STX1A ASAP1 NUAK1 NAP1L5 GAP43 ATP6V1B2 MMP24-AS1 ACTR1A MAPRE3 ERH SEZ6L2 DCTN1 EID1 TPRG1L VSTM2L CPNE4 RAB2A RTN4R SLC2A1 ZNF365 TUSC2 NELL2 WASL PSMC1 FAM134A NCEH1 STMN4 NDRG4 SNX10 ARL6IP5 TRAPPC1 FABP7 CHMP4B HMGCR PTGER3 STMN3 TMEM150C TMEM155 DCC NTNG1 NPTX1 RAB7A OAZ1 PNMA1 DIRAS1 TMEM70 VDAC3 MLF2 YJEFN3 BAG4 UBE2V2 SCN3B LPPR4 KCNK1 OPA1 SYNGR3 NCALD MAST3 SARAF CDH8 ITFG1 SYT5 ZNF574 CDK5 NPTXR EPHA6 TMSB4X KCNC2 BEX1 LHFPL3 DPYSL2 B3GALT2 NDUFC1 PNMAL2 SLC6A17 MTRNR2L8 NOV MAPK1 ATRN SIRPA DNAJB9 CHP1 RPL35 ACP1 VGF MMD MAP4 APBB1 FSCN1 SQLE SLC25A5 VSTM2A RHOA RCAN2 IGSF21 ATP6V1G1 LZTS1 PRKAR1A PPP3R1 HDDC2 RAB6B RAPGEF5 SLIT1 CHL1 PELI2 CRYM PPIA TMEM59L SLC9A6 DBNDD1 TUBB4B PEA15 LYNX1 CLSTN1 CADM2 PPP1R9B CA11 APEH TMEM35 TSC22D1 PPP2CA HSPBP1 RHEB NDUFB11 ESYT1 RAB3C PTMA PGM2L1 FBXO2 SLC30A3 SLC12A5 RPL31 ATP5A1 UQCRH PLD3 KIF3C PSAP CMAS TAGLN3 FAM3C UBE2M CLU ISCU ATPAF1 ADAM23 RPL15 SNRPN CAP2 KCNMB4 SPOCK2 KCNV1 WBP2 OLA1 JUNB HOPX CTBP1 C1ORF115 PEBP1 NAP1L2 DDN RPL19P18 CAMKK2 SV2B TGOLN2 UBQLN2 GPR98 NREP COX5A ARPC4 SYT11 NDUFA4 OLFM1 UQCRC1 CCDC154 MTCH1 HMP19 ATP5G3 PET100 RPL8 YWHAZ CCDC184 RHOB TPPP OXR1 OPCML FBXW11 EGR3 NARS ATP6V0E2 ATP2B4 CLIP3 EFNB1 ATP5E GUK1 CSDE1 INA RPL3 PDP1 MZT2B BTBD10 DYNLL1 SUMO1 PELI3 PPP2R2C ANXA6 CAMK4 GADD45GIP1 DNAJB6 GLRA3 PPP1CB SLC25A6 EGR1 ATP6V1G2 IDS NUDT4 ATP6V0C NSF RP11-20I23.1 BSCL2 TUBB PCDHA4 PCDHA10 PCDHAC1 PCDHA9 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SNAP25 MT-CO2 MT-CO3 MT-ND4 CHN1 PPP3CA MT-CYB MT-ND2 ENC1 VSNL1 GDI1 MT-ND1 RTN1 RTN3 ATP1B1 RTN4 TSPYL1 SYT1 LMO4 MT-ND3 SYTL2 VAMP2 MT-ND5 PRNP LMBRD2 MTRNR2L1 ZBTB18 PDP1 ATP2A2 CSDE1 SPARCL1 NECAB1 CCK SERINC1 PREPL IPCEF1 LMO3 WASL PRKCB ATP6V1B2 SNCB NGFRAP1 CALM1 GUCY1B3 PPP3R1 APLP2 DKK3 PHYHIP NCDN HNRNPA1P40 PEX5L TMEM130 CALM2 GPM6A CTSD ATP2B2 TRIM37 SLC17A7 RPL31 MT-ATP6 ATP9A NEFL INPP5F CPLX2 PRKACB GPX4 SLC9A6 CREG2 TSPYL4 VSTM2L CDK5R1 RGS4 ARL6IP1 SMS MTATP6P1 ZFAND5 APP CDK5R2 NRCAM CORO2B LDB2 PSAP ARHGDIA ACTR10 DCLK1 PPIA OR6D1P DPYSL2 EPS15 SLC30A3 CLSTN1 IDS NEGR1 SYT11 OLFM1 THY1 BSN TSC22D1 GNAQ PNMA2 TUBA1B TM2D3 CDK17 UQCRC2 ISCU AK5 GAP43 PLCB1 RAB6A OCIAD1 CAP2 HK1 JUND NDRG4 PKM BASP1 CAB39 SCN3B SV2B MAP4 CLU KIF1A SARAF NCEH1 EFR3A STMN3 YWHAG ARL6IP5 RP11-111M22.2 EIF4A2 GNB1 FXYD6 CDK14 TMEM59L CADM2 BEX1 SEPW1 RP11-20I23.1 ATP6V0C NR1I3 PI4KA RPL35 PRDM1 RAPGEF5 ATP5A1 AP1S2 SERPINE2 MAP2K4 RPL12 MZT2B STXBP1 RAB2A TESPA1 EIF4G2 TMSB4X MTRNR2L12 FBXW11 PRKAR1B KLC1 ARPP19 SYNJ1 SPOCK3 EID1 RAB40B YWHAB ATPAF1 FAM131B PJA2 ZNF350 CTNNB1 CTBP1 ATP5E SCN1A TOLLIP PRUNE2 SYT17 PVRL1 HSP90AA1 SERPINI1 TLN2 SUMO2 SULT4A1 APLP1 C1ORF115 UBL5 NRF1 SLC24A2 CNTN1 MYL12B CKB CMAS WDR47 UBC RGS12 SIGIRR WASF1 TPT1 YAF2 CDH22 TAGLN3 CDC42SE2 RNF11 OPN3 LINGO1 PPP1R9B TSPAN7 CFH YWHAQ FAT3 HMGCR ARL2BP PCDH8 EIF1 ISCA1 MPC2 JOSD2 PRDX2 ITM2B NPAS3 PCMT1 C1ORF52 DMTN MTPN PLS3 VGF NME1 YBEY PAM TERF2IP CADM3 BAI2 UCHL1 MORF4L1 C14ORF2 CBX6 SEZ6L TBCB RPL18A RRAGA TMA7 NPTX2 PCDH19 ELAVL2 CAPNS1 RPS5 HTR2A SEZ6L2 ENSA YWHAH PPP1CB ATP1A3 MRPL15 EGR3 SUCLA2 MPPED1 VDAC1 FAM219A ASAP1 WBP11 PNMAL1 GRIN2A CABP1 OPA1 FKBP1B WSCD1 FBXO2 RPL41 TUBB4A RPS10 SLC16A11 C7ORF50 ARHGAP35 FAM96B ARPC4 DUSP6 DIRAS1 COPS7A SCAMP5 ACTB PTPRS HPCA SEPT1 SRP9 HMP19 PPTC7 XX-CR54.1 SLC1A2 SLC39A10 OAZ1 NDRG3 PAFAH1B2 SPRYD3 FAIM2 SERF2 SDCBP MAPK1 GAPDH TEX2 CAMK2G PHYHIPL NPTX1 COX7C CYCS HNRNPH2 ATP6V0D1 TOMM20 RAB3C DNAJB6 CLTC COL24A1 ACP1 DPP6 CNTN6 KIF5A MTRNR2L6 PNMAL2 C12ORF49 PNMA1 FKBP8 UBQLN2 DNAJC6 FJX1 PGM2L1 NDFIP2 STMN1 NPTN MTRNR2L8 SYNPO SAMM50 CHGB JUN H2AFZ NDUFA13 PSMD2 GPR37L1 CX3CL1 PIK3R1 PET100 RPL36A UBA52 LANCL1 SNRPN GMFB CHL1 TGOLN2 CAPZB F8 NSF APOLD1 RNASEK-C17ORF49 TUBB3 ATP6V1G2 BIRC5 RPL21 PCDHA4 PCDHAC1 PCDHA10 PCDHA9 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 RPL37A GRIN1 CLSTN1 GPM6A PREPL RPS15 MT-CO1 NDUFB8 RPL38 SYT11 CA11 RPL31 CALM2 SNAP25 SV2B PRNP MAPK1 RTN4 RPL21 NRGN CHN1 VAMP2 PTK2B PPP3CA SUB1 TBC1D15 PLCB1 RTN1 RP11-111M22.2 RPL23A TSC22D1 ARPP19 MTRNR2L1 SLC39A10 CDK5R1 ATP5B TMSB10 RPL6 TMSB4X PEBP1 MT-CO2 NDUFB2 ITFG1 FTL SUMO1 RPL41 YWHAZ MT-CO3 SH3GL2 PDE1A SDCBP COL5A3 CALM1 PIK3R1 OLFM1 MTX3 PRKACB RPL3 CACNB1 HS6ST3 UQCRB IDS ELMO1 RAB3B SYTL2 DNAJC21 SCN1A TMA7 COX7C C1ORF115 NGRN CLPTM1 NDFIP2 NDUFA4 PIP4K2A SERPINE2 ATP5J TMEM14A PRDX5 APLP1 FIBP GUCY1B3 NAPB MTATP6P1 PGD RPL13 KIFAP3 ZBTB45 PIEZO2 CPE WASF1 MT-ATP6 WLS TENM3 NDRG4 PHYHIP ATP5E CCDC85B GDI1 RPS27A NR4A1 RPL35 CRYM UBL5 ATP6V1B2 BEX1 RPL13A MT3 CDH6 UBA52 C7ORF50 ACTR10 SYT1 SCAMP5 MTG1 HOMER1 SEZ6L PAM PPP2CA PBXIP1 ATP6V1E1 HINT1 CTBP1 NCDN KCNAB2 MT-ND3 USMG5 EPB41L3 FAM127A S100A6 RAB2A CRIM1 RPL7 KCNC2 FLT1 LAMA4 PSD3 EPS15 SNAP91 NUDT21 NGFRAP1 SERINC1 KLC2 ZCCHC17 SMIM13 APLF SERP2 DGKG RBX1 SLC22A17 RAB40B CBLN4 MT-ND4 CNR1 GNAQ SKAP2 TESPA1 PFN2 CADM2 COX4I1 GNG2 TMEM59L SAMM50 STXBP1 ARPC4 PACSIN1 RPL32 CCK ARL6IP1 VSNL1 MT-ND2 CREG2 ATP2B2 ZFAND5 UROS SUMO2 NELL2 GDA NREP DLD ENC1 MARCKSL1 RTN3 RPL11 THYN1 PEG10 RNF11 PET100 KIF1A UQCRH GOT2 BIRC5 PTPRN SMAP2 LMBRD2 RP11-147I3.1 MT-ND1 CLU DIRAS2 UBA1 HSP90AB1 PCDH19 CLTA C19ORF53 TOMM7 SPOCK1 OPA1 UBE2M NDUFA11 DDN CHCHD2 LMO4 PGK1 MOXD1 YJEFN3 C18ORF61 TPPP CAMK4 COX7A2L RAP1GAP2 NDFIP1 SNRPN TUBB2A TMEM130 CERS6 MAP7D2 STK24 NDUFB3 MAP2K2 TCEA2 BEX2 HPCA EZH2 GORASP2 CAP2 RPL15 CAPZA2 ZNF703 ATP9A KLHL5 GRIN2A ATP6V1G2 ATP6V0C TUBB3 AC244489.1 RP11-20I23.1 NUDT4 MTRNR2L6 APLP2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 AC244489.1 SYTL2 BIRC5 ATP1B1 RPL41 PEA15 RPL26 NRGN OCIAD1 RPL13A CABP1 MAP1LC3A CFH SNAP25 ATP5J ENO2 RPL35 NAPB CKB PDP1 TSC22D1 RPL17 RPL38 RPL7 C1ORF56 SERPINE2 RPL32 CALM1 RPS28 TMSB4X COX7A1 SCN1A PRKCB RPL3 NAT8L RPS27A CRIP2 GUK1 PLCB1 RPL23A SCN3B SARAF EPHB6 SLC12A5 EIF1AX CALM2 TMSB10 VAMP2 RPL37A IDS ZNF385D PLD3 UBE2V2 GHITM MT-CO3 TRMT112 TSPAN7 CACNB1 CNTNAP5 TMEM158 PCDHGA5 C1ORF52 TRHDE ZBTB18 PSMD8 PTGDS BCAP31 NDRG2 CYFIP2 FIBP RCAN2 CAMK4 YIPF3 FAM96B COX7C LRRIQ1 SLC22A17 NDUFA13 COX6B1 ATP1A3 SAMM50 MLF2 MAP7D2 HCN1 RPL10A C2ORF80 LLGL2 DYNLT3 NDFIP1 MYL6 NMNAT2 PITHD1 IQSEC1 H2AFZ RTN3 C20ORF24 SYT5 RPL31 LL0XNC01-16G2.1 SLC24A2 COL9A3 RPL12 RAB6B CTNNA3 SUMO2 MAP2K1 ATP5G2 TXN DPYSL2 CALM3 COX4I1 GPM6A ATP6V0B ALDOC DDN MT-ATP6 RAB40B STMN4 SV2B USMG5 MTCH1 BRINP3 REEP5 PRKCG CEND1 KCNC2 HPRT1 ATP5I TSPYL1 KCNAB2 HINT1 CHN1 RGS12 RPL36A DYNLL2 RORB NCDN RPL11 NGFRAP1 GNB1 YWHAZ SPON2 APLP2 BAG4 RPS5 FKBP4 PRNP ANXA6 MRPS21 ITPR2 C14ORF2 HSPB7 ATP5G1 WBP11 TALDO1 CCK ZNF365 ELAVL4 RP1-228P16.1 PDE1A GDI1 NAA38 PIN1 TMEM65 APOD LAMP5 MT-CO1 SGK223 CAMKK2 WASF1 MT-ND4 UQCR11 UQCRB NDUFB1 ASPDH MAST3 VPS35 RTN4 ATP1A1 MT-ND1 UQCRQ PGM2L1 MORF4L1 LMO4 CLTA SLIT1 RAP2A CALN1 RAB11A RASGRF2 MORF4L2 PNMA1 TMEM179B RPL15 ACTB PHYHIP EIF1 TMX4 HAPLN4 HN1 DNAJC6 CLSTN2 NPTN BEX1 NFIA FILIP1 ARL6IP1 PPP2R2B UCHL1 TUBA1A RPL39 TLE4 COL5A2 ARPP19 ATP6V1A FTH1 JAKMIP1 THY1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL31 RPS27A RPL37A RPL38 ATP1B1 TMSB10 RPL26 RPL36A EIF4A2 COX4I1 SNAP25 BIRC5 RAB3B SYTL2 RPL6 RPL13A DMTN MT-CO1 PIK3R1 CKB UQCR10 PREPL RTN4 RGS12 OAZ1 CALM1 NUAK1 ARL8A NDUFC1 STMN1 RPS28 CDH22 SYT1 SERPINE2 BASP1 SLC12A5 RPS3A PFN2 NPTX1 PPP3CA AC244489.1 TUBB4A PDE1A ASPDH OR6D1P PPIA TKT SLC17A7 MT3 RGS4 RP11-111M22.2 RPS15 NECAB1 ESCO2 ARFGAP2 IDS NR1I3 UBB CCDC158 PCDH19 OLFM1 GPX3 RPL10A NRCAM SLC7A1 NDUFB4 LIG1 MTPN SLIT1 SSBP3 MAP1B NPTXR FIS1 PRDM8 WBP2 LINC00086 TUBA4A FAM19A2 NDUFA4 HSP90AB1 HSP90AA1 BANF1 GSTO1 TPI1 PRDX5 TSPYL1 NEGR1 TSC22D1 ANO3 UQCRB PI4KA RILPL2 PPDPF ZNF385A PGK1 MRPL15 KCNV1 MTCH1 NGEF COX7B CDC37 RAB3IP CLU LIMK1 WBSCR17 TOMM7 DCTN3 FAM134A NGFRAP1 MT-CO3 GALK1 OXR1 BEX1 RCAN3 NDUFA13 NDRG3 FAM3C MCHR2 SUSD4 RPL35 RPS10 CRYM PAFAH1B2 NDUFAF3 AKR1E2 KIF3C RPL17 TPT1 CTSD IDH3A SERINC1 RPL12 REEP2 PRKCG FBXO2 TUBA1A PNKP ENOPH1 CTBP1 SARAF MAPK8IP2 UQCRC1 TBR1 ATP1A1 RAP2A DPP6 TCEAL5 RPL21 CABP1 SLC25A6 PEA15 DNAJC5 PFDN1 OCIAD1 YWHAQ PHYHIP NRGN RTN1 RAB6B SLC1A2 GPM6A TMEM151A GDA CAPZA2 RPL7 CHL1 CHN1 POLR2M TNNT2 PGM2L1 RPL23A SERPINI2 TCEB2 CLTC BAI2 SKP1 PET100 CCT5 SEPW1 HPCA CYB5R3 EDF1 FTH1 LMO3 ATP5G2 LMO4 PTPRS RPL15 AHNAK2 UBA1 HSPB1 ATP9A PPP1CB MFN2 PLD3 EIF1 YWHAH TMEM59L ATP2B2 DNM3 SYN1 ACOT7 SLITRK1 COX7C ATP5G3 BTBD1 SLCO2A1 COX7A2 NAT8L CX3CL1 APLP2 COX7A2L PNKD GAPDH EFR3A ATP6V1C1 CALM3 EPS15 ARF5 ENSA RPL32 RPL3 SUMO1 MT-ND2 SYN2 ATP5E MIF ALDOA RNASEK-C17ORF49 NUDT21 RPL41 NSF TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND1 MT-CO2 MT-ND4 SYTL2 SNAP25 MT-CO1 MT-ATP6 MT-ND3 CHN1 MT-CYB MAP1B APLP1 ENC1 HOPX LMBRD2 MAPK1 GRIN2A FAM84A MT-ND2 RP11-219A15.1 NDUFA4 TM2D3 GUCY1B3 PTPRN SLC30A3 MT2A RPS15 ATP2B2 UBE2M TOMM7 CCK PSAP MT-CO3 DKK3 CNTNAP5 EIF4A2 ATP9A SYT17 SERINC3 EFR3A PDGFRB ATP5F1 AK5 MFN2 RPL12 MAL2 SERINC1 PPIA MTRNR2L1 ATP6V1C2 OPCML TESPA1 DCLK1 TMSB4X SUB1 NDUFA8 RPL31 RAB40B PRKCG SLC38A11 BAALC COX7A1 LINGO1 ATP6V1F TOLLIP HSP90AA1 WSB2 ENO2 RGS4 GNG3 DNAJB6 ALDH5A1 ALS2CR12 CHMP5 CALM2 NPTX1 SERPINI1 SRP9 NGFRAP1 CLTC PSMD12 NRGN FTH1 ATP5A1 POLR2K CHL1 LMO3 RHBDD2 ATXN10 MTND1P23 LGI3 WASF1 NAT8L TSC22D1 LRP1B MRFAP1 STMN1 UQCR10 MARCKS SV2B CDS1 ETS2 CAMK2G CALM3 DYNLL2 KRAS SPARCL1 PRKCB MDH1 RNF212 PDP1 RP11-111M22.2 POLR2I PPP3CA YWHAZ GPM6A UBQLN2 CDH13 IMMP1L ATP1B1 PLEKHD1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B CHN1 SNAP25 ENC1 RP11-111M22.2 RTN4 BIRC5 NGFRAP1 BEX1 NECAB1 NR1I3 OR6D1P CREG2 DCLK1 SEPW1 LPPR4 GRIN2A APLP1 NRGN HOMER1 SYT1 PRKCB PPP3CA ZNF385D ARFGAP2 LAMP5 TESPA1 ARPP19 NFE2L1 MGP PRKACB PDP1 FAIM2 PLCB1 ARL6IP1 PSAP OXR1 PGM2L1 ATP1A3 RPL38 LMO4 GAPDH NDUFB7 MT-CO1 RTN1 AC244489.1 TSPYL1 GRIN1 VAMP2 PREPL SLC17A7 TCEB1 PRNP HNRNPA1P40 PTGES3 AK5 ENO2 MAST3 SERINC1 ITM2C TMA7 PGAM1 ACTB LMO3 C1ORF115 MT-CYB CEND1 PHYHIPL TSC22D1 CABP1 RAB1A CALM1 ATP5I SLC1A3 MT-CO3 THSD7A ATP1A1 CPLX2 SNCA FXYD6 FKBP1A GRINA TBC1D28 HSP90AA1 RGS12 PIN1 TMX4 HN1 PTPRS CDK5R1 FAT3 GDI1 HSP90AB1 CCK MTRNR2L1 UQCRQ CSDE1 VSNL1 CKB CPE CADM2 CLU NREP UQCRC2 SCN3B BASP1 MT-ND2 CACNG3 SH3GL2 NPTXR RTN3 BSG KIAA1045 CALM2 PSMD12 STMN1 NDUFS5 GTF2H2C_2 CFH RP11-20I23.1 ATP6V0C SSTR2 KLC1 MT-ATP6 GSG1L PNMAL2 DCTPP1 MRPS21 PGRMC1 ARHGAP29 BSN PEBP1 TUBA1A CERS6 CIAPIN1 CTNNA2 TXN TMEM147 MRPS7 NNAT YWHAG LINC00086 BTBD10 TMEM179B NDUFA13 SUB1 SRM CD59 LIG1 ISCA1 NOV AC010731.4 CAMKK2 CNTN1 ATP6V1B2 GPM6A CBLN4 RPL6 PRKAR1A ZBTB18 ADAM23 NDUFB1 AP2M1 ATP6V1F PCDHA4 PPP3CB MAL2 GPCPD1 PCGF1 TRIM37 PRUNE2 KCNC2 RAB3A OPA1 MAP1A RABAC1 FAM19A2 BANF1 TSPAN7 MAP2K4 SH3RF2 SLC12A5 ATP5G2 ATP5G3 SSTR1 NUTF2 TRAPPC1 SKP1 KCNV1 RPS28 ATP5B TMEM59L AURKAIP1 PRKAR1B ATP6V1C1 ATP5G1 TRMT112 SLC7A1 RPL39 PCMT1 PSD3 MAPK1 MAPRE2 HS6ST3 MAP4 PIK3R1 KIF1A FGF12 CHMP5 NELL2 PTK2B AP1S1 SERPINI1 MGST3 VGF RPL37A PSMA7 NCDN ONECUT2 RNASEK-C17ORF49 OCIAD1 LAMTOR5 B3GNT7 GABARAPL1 NDUFC2 DNM3 AP2B1 COX6B1 PI4KA WSB2 BAD CADM3 DPP6 ARHGDIA EIF4A2 OLA1 MLLT11 SYNJ1 NAPA TLN2 ZNF365 ANXA7 COX7C GABARAPL2 TPPP CTU2 PDLIM5 TERF2IP NSF MTUS1 HDLBP HMP19 WASF1 PHPT1 SCN1A EGR1 GPX3 TOLLIP PSMB7 SELT TCEA2 CHL1 YWHAZ DCTN1 MT-ND4 SNRPN RAPGEF5 RPL26 ATP6V1E1 STXBP1 SLC7A8 CACNB1 CDH8 MAP1B UROS LDB2 PMEPA1 STX1A MRFAP1 SLC25A5 KIFAP3 CAPZB TCEB2 RGS4 YAF2 PPP2R2C FAM134A PTPRN TUBB2A CNR1 ATP1B1 NAP1L2 RPL18A ADCYAP1 MYL6 MORF4L2 UROD SNCB NDFIP2 TP53I11 AZIN1 MSMO1 BEX5 CAMK2G SLC22A17 FAM3C HOPX PLD3 IDI1 HPCA DNAJA1 NAT8L ANO3 NEFL EGR3 SNX17 ITFG1 SGK223 RAB6A UQCRB SYT4 CLEC2L RPS6 GOT1 ATP6V0B WBP11 CHCHD2 SNX10 RPS27A PCDHGA10 RPL31 WARS FAM84A SH3RF1 UQCR10 RPL23A SERINC3 NRCAM SSPN PGK1 WASL KCTD12 APP RAB3C EPHB6 ZFAND5 ALDOA PSENEN GHITM PCBP1 OPCML DYNLL1 ATP5E CYFIP2 MT-CO2 YWHAQ REEP5 SIRPA PDE1C GPR26 TMSB10 TSPYL4 CAPNS1 NDRG4 ARF3 CORO2B NDUFA5 PAK1 FTH1 ATP6V1G1 SOD1 PHYHIP GPNMB YWHAH PRIM1 PEG10 GPX4 VDAC1 SCN2B NEUROD2 GLRA3 NEFM GNAQ ATP6V0E2 MAP2K1 TRIM36 DIRAS2 MT-ND5 FXYD7 TUBB4B PSMD2 SMIM13 SULT4A1 NGRN BSCL2 MTRNR2L6 GABARAP ARF5 RPL13A TUBB RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 SNAP25 CALM2 RPL38 SYTL2 TMSB4X MT-CO3 MTRNR2L1 RPL31 CHN1 CALM1 RPL37A COX7C ATP1B1 ENO2 RTN3 VSNL1 RTN4 MT-ND4 MT-ND2 YWHAB RPL36A HSP90AA1 RTN1 CYCS ACTB PEBP1 MT-ATP6 SCOC MT-CYB PSAP NDFIP1 STXBP1 RPL32 SCN1A PRNP GPM6A RPL39 RP11-111M22.2 SLC22A17 RPL41 PPP3CA CALM3 YWHAG RPL26 MFGE8 VDAC1 RPL35 AP2M1 PSD3 YWHAZ MAP2K1 MT-ND3 ENC1 SPARCL1 TPD52 MT-ND1 UQCRB SYT1 STMN1 CADM2 OAZ1 NRCAM SLC39A10 EIF4A2 CTNND2 GRIN1 RPL11 BASP1 NPTX1 PPP3CB MTRNR2L6 SERPINI1 RPL21 MAST3 SEPW1 STXBP6 PFN2 ARPP19 PRKAR1A SKP1 NAPB PSMD12 PDE1A DKK3 LYNX1 SCN3B SEZ6L NRGN FAM131B CDK5R1 PLCB1 FKBP1A PGRMC1 TSC22D1 LAMTOR5 NCAM2 CYFIP2 PJA2 ATP2B2 GUCY1B3 NEFL PRKAR1B H2AFZ NREP ISG15 RPS3A NDFIP2 CBX6 TUBA1B OLFM1 RP11-20I23.1 NPTXR ATP6V1G1 SLC12A5 DSTN ATP6V0C TM2D3 GNG2 SIRPA RAP1GAP2 ATP5A1 CHMP4B PRKCB ATP1A1 MAP1B PCSK1N RAB6B NCEH1 COX4I1 ID2 ARL6IP1 NECAB1 CLSTN1 PCDHA4 YWHAQ FABP3 CCK EIF1 RAB6A CTBP1 RPL17 PHYHIPL SERINC1 NCDN DMTN TPT1 DYNC1I1 BSCL2 IDS ATP6V1G2 HPCA SSBP3 MAP2K4 SCD5 DCLK1 C6ORF1 CLTA PREPL SYT13 CPLX2 TRIM36 SYT4 AP2S1 RPL12 RAB1A CNTNAP5 NPTN OR6D1P SPRYD3 EIF4G2 DYNLL2 RPL23A RPS28 WBP2 MAP1A PNKD UBB EIF1B COX7A2 PRUNE2 YWHAH TOMM7 STRAP RAB40B MT-ND4L FAM84A DPP6 C19ORF70 OSGEPL1 SLC17A7 RPS12 C1ORF52 LINGO1 NGFRAP1 HK1 SLC7A8 UQCR10 PCDH8 TRIM35 SNCA ADAM23 TOMM20 RAB3A KCNMB4 GJA1 FASN KLC1 SDCBP SNX3 SULT4A1 GLRA3 RPL8 TSPYL4 FAM3C PPP1CB PEG10 SMIM12 MRPL51 PAK1 PLD3 ATP5I MMP24-AS1 MYL6 PARM1 POLR2L PEA15 PRSS3 CBLN4 RPL13A CREG2 WSB2 ATP5G2 PRDX5 VSTM2A FAM19A2 PGM2L1 CLTC LMO4 LSM4 MTATP6P1 MRFAP1 RPS4X S100A16 TUBB4A NDUFA11 C14ORF2 C19ORF53 PRKCE GLUL TSPAN7 RGS12 MRPS21 ATP1A3 UQCRC2 GAPDH TUBA1A THY1 RHEB BCL11B PRKCG SPON1 TOX CRIP2 NDUFB4 GRIN2A CD99L2 IGFBP5 SQLE HS6ST3 C6ORF141 EDF1 ATP5E NKIRAS1 TGOLN2 FAT3 BRK1 NDUFA4 EID1 TBR1 RNF11 MLLT11 ARF3 SUMO3 UBA52 MTND2P28 ZBTB18 COPS8 NDUFB8 PI4KA CAMKK2 SLITRK1 RPS15 CAMK4 MT3 ATP2B4 AK5 GPR88 MYEOV2 VAPB SNX10 ISCU HOPX RAB4A JAKMIP1 NSF CLIP3 BEX5 TBCA MAP1LC3A MFN2 RPS27A DYNLRB1 TMEM59L SLC24A2 PPA1 SV2B IQSEC1 MMD FTH1 SYT11 HSP90AB1 SPOCK3 MRPL37 CSDE1 SYN2 SCAMP5 SAP18 CNTN1 RCAN2 TCEAL2 ARL6IP5 TMEM147 RRM2B GOT1 FKBP8 BLOC1S1 PKM PRDX1 SERPINE2 MAGED2 CHMP5 RAN RTN4R RPL7 APOL6 MTRNR2L12 PITHD1 ZFAND5 RGS4 LGI3 RPL15 PTPRN BSN NUDT21 NDUFAF3 ENSA NAP1L2 PPP2CA TUBA4A UQCRQ NDUFB10 RPS6 EIF1AX RP11-195F19.5 CPE USMG5 LMBRD2 EPS15 PIK3R1 SUSD4 MORF4L1 COX6C ELMO1 SELT BNIP3 GSK3A GNB1 OST4 SNAP91 RPL13 CDH13 SUB1 ELAVL2 MTRNR2L8 SYNGR3 DIRAS1 WDR47 HTR2A TMEM130 KIF1A CADM3 SERINC3 OPA1 HMGCR NELL2 NFE2L1 UCHL1 CORO2B TMEM117 CRKL SPOCK1 ARL4D COX7A2L BEX4 ATP5O MT1X MFSD6 COX5B CH17-53B9.2 PDP1 SRP9 VAMP2 CCDC124 MRPL20 AP2B1 SLC25A22 PNMA1 COL24A1 RAP1GDS1 RBX1 BSG SLC38A1 PNMAL1 PTMA PSMB3 MIF RPL3 NGRN TUBB2B KRT17P6 TUBB2A ARF5 AC244489.1 RPS26 GTF2H2C_2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 MAP1B MT-CO3 SNAP25 CALM2 SYT1 ENC1 MT-ND4 RTN4 MT-CO2 CCK GPM6A EIF4A2 CLSTN1 NRGN CALM1 THY1 CKB SPARCL1 RTN1 MT-ATP6 IDS GDI1 ARPP19 VSNL1 TSPYL1 PPP3CA APLP1 ATP1B1 RTN3 PRNP MT-CYB TSC22D1 CALM3 TMSB4X TMSB10 GAPDH TUBA1B HSP90AA1 ACTG1 YWHAH ACTB CLU NECAB1 LMO4 ZBTB18 MT-ND2 NDFIP1 YWHAG RGS4 ATP6V1B2 YWHAZ PKM OXR1 OLFM1 FTH1 STMN1 PPIA SLC17A7 PRKCB TSPYL4 PTMA ATP2B2 UBC TUBB4A KLC1 PREPL SCN3B CDK5R1 HSP90AB1 GRIN2A WBP2 BEX1 NRCAM MTRNR2L1 PJA2 PHYHIP NEFL SERPINE2 SARAF MT-ND1 CNTN1 ATP9A NDRG4 CREG2 BASP1 PGM2L1 SERINC1 ARL6IP1 WASF1 DYNLL1 PIK3R1 NDFIP2 RAB6B SLC39A10 NGFRAP1 SERPINI1 ELAVL4 HMP19 PDP1 MAPK1 PRKAR1A ATP2A2 MTATP6P1 OCIAD1 PLD3 ZFAND5 PRKACB TAGLN3 PFN2 MTRNR2L12 GOT1 DPYSL2 HMGCR FAIM2 FKBP1A SNCB STMN2 TSPAN7 SYT11 NPTN DMTN CADM2 CHL1 GABRA1 ENO2 VAMP2 SYNPO PCDH8 LMBRD2 MAP2K1 PLCB1 ATP1A1 APP NUAK1 RP11-20I23.1 CTNND2 MT-ND3 CAPZA2 NUDT4 GHITM RPL15 ARF1 SUMO3 YWHAB ATP6V0C STXBP1 CEND1 PNMA2 SNRPN NSF RAB3B SYTL2 MAST3 TMEM59L HS6ST3 AP2M1 COX4I1 LINGO1 CPE TESPA1 TPRG1L SLC8A2 CYFIP2 SLC22A17 PRKAR1B PGAM1 ARL6IP5 SNX10 KIFAP3 C1ORF115 PPP2R1A CAP2 UCHL1 RAN TOMM20 GRIN1 TPPP DPP6 NCAM2 EGR3 EPB41L3 TMOD2 C14ORF2 CAB39 MAPRE3 RHEB CTNNA2 RPS15 SYT13 SUMO2 SEPW1 CTSD TUBA4A CFL1 PACSIN1 EFR3A GRINA SYN2 NDRG3 GDA MTPN SLC12A5 NCDN HOPX PEX5L CBX6 NAPB TMEM130 CA11 EDF1 RAD23B PPP2CA MLLT11 PTPRN SV2B DNAJC5 NPTXR RAB3A ARF3 DDAH1 SCAMP5 SCN1A EID1 MDH1 NMNAT2 ITM2C STMN3 EIF1AX FAT3 PI4KA GAP43 TUBB2A SPOCK1 PSAP LMO3 MAPRE2 RAB4A TPI1 FAM127A PCDH17 UQCRFS1 PPP3CB SYT4 RPS28 SERINC3 ANO3 VDAC1 WSB2 VGF SKP1 BSN SLC9A6 GUCY1B3 LANCL1 KIF5A TMX4 PEBP1 MTCH1 KCNAB2 YWHAQ ATP6AP2 VSTM2L TPT1 DIRAS2 OAZ1 ATP6V1F ATP6V1A STMN4 ITM2B ATP6V1E1 UBE2N HOMER1 DNAJB6 TUBA1A ZNF385D MTRNR2L6 EIF1 PELI3 SRP14 CMAS PSD3 INPP5F TBCB SYNGR1 SYNPR TOMM7 HTR2A ARHGAP35 COX7C SCD5 AP2B1 NGEF TRIM37 ARL8A MYEOV2 VPS35 PNMAL2 RPL41 APLP2 CAMK4 SAP18 NELL2 ATP5B AP3S1 AK5 RAB11A NAT8L DYNC1I1 PPP2R2C GMFB NPTX2 FARSA RAB2A RAPGEF5 PAM COPS7A CERS6 LDB2 PNMAL1 BNIP3 RAB3C SYN1 CABP1 SIRPA RPL32 CYCS PPP3R1 GNB1 ARHGDIA PPP1CB TGOLN2 HSPA8 B3GNT1 C1D SUB1 IPCEF1 EIF4G2 TOLLIP PTK2B RHBDD2 DCTN1 BCAP31 WBSCR17 SPCS2 NCALD ARL8B MRAS CSDE1 CX3CL1 RPH3A SSBP3 MGST3 DCLK1 APBB1 SEZ6L2 TMA7 TMEM65 ALDOA CDK17 JUND HEY1 NDUFA1 CD63 DNAJC21 MBOAT7 MIF ARFGAP2 MRPL20 NDUFB5 EPS15 D4S234E SGK223 GPX4 COX6A1 RPS6 CCDC85B SYT5 B3GALT2 PSMC5 CTXN1 CLTC FXYD7 KIAA1045 EIF1B CPLX2 FAM19A1 RCAN2 MAP1LC3A GNG3 BSG ELMO1 ZNF365 PRKCE SELT ENO1 ISCU SLC6A17 UQCR11 CCT5 NDUFS5 CHCHD2 ASAP1 PRKCG SMAP2 SH3BGRL3 CLTB ATP5J2 SPOCK2 SCOC KCNK1 PITHD1 COX17 DDN RPL31 NDUFB1 RPL39 FXYD6 KIF3C IMMP1L PTGES3 VDAC3 NAP1L2 RAB6A CHMP4B ATP6V0B RPL6 MAP4 IQSEC1 AES UQCRH JUN GFRA2 MAP1A INA MAP7D2 FAM134A SMIM13 DNM3 PPP2R2B MAPK8IP2 PFN1 STX1B NDUFC2 PCDH19 KIF1A ARF5 UHMK1 CDK5R2 NRN1 OXCT1 EGR1 SUMO1 MCHR2 LGI3 GADD45GIP1 CAPZB RPL3 ANXA6 SYNGR3 SNCA SLC38A1 SPTBN1 CHP1 SLC24A2 REEP2 NAP1L5 SKAP2 PCMT1 EHD3 KIF21A CLIP2 NARS STX1A OLA1 CADM3 FSCN1 MBP CARTPT MLF2 SULT4A1 UQCR10 PRDX3 CORO2B ACOT7 PMEPA1 LPPR4 KCNC2 KCNAB1 JAKMIP1 UBE2QL1 ATP1A3 MT3 REEP5 PRDX2 RP11-111M22.2 TUBB3 NGRN RELN NHP2L1 GNAQ TUBB AKAP12 MT-ND5 BAG4 REPS2 ATP5J MYRIP MTRNR2L8 SNAP91 CLIP3 ETFB ATP6V1G1 CD99L2 PSMD2 NEUROD2 HDLBP PEA15 CBLN4 COX7A2 NFIA LIN7B TMEM132D COX5B BSCL2 CAMKK2 ONECUT2 BEX5 DUSP1 PPM1A UBQLN2 ATPAF1 CDKN2D MZT2B WASL UBE2E3 RP11-631M6.3 ADAM23 MRPL15 NCEH1 ITFG1 MORF4L2 NPTX1 GPR116 RAP1GDS1 ENSA ATP5C1 NEFM LGALS1 MORF4L1 NUDT21 NBL1 TCEB1 NEGR1 LSM4 MARCKS RPL37A EPHB6 PPP2CB FAM3C ZCCHC17 NHP2 ABRACL PSMC1 IFT52 DYNLL2 EGFL7 PCSK1 PTGER3 DYNLRB1 RAB40B VAPB NDUFB8 HSPBP1 RABAC1 SPRYD3 SH3GL2 BEX2 CTBP1 USMG5 LHFP CNR1 RNF11 ETV5 TMEM191A C1ORF52 ATP6V0E2 CDC37 RPL35 DHCR24 RANBP1 NAPA HCN1 SYNJ1 GABARAPL2 CDS1 C14ORF132 UROS TCEB2 MPPED1 PFKP ABHD8 BRK1 DLD DYNLT3 RAB27B SMS ELAVL2 PNKD BAI2 MAP1LC3B UBA1 TERF2IP TCEAL7 SNCG MYBPC1 WDR47 COA3 ATP5I PFDN1 RTN4R STRAP PEF1 GPR37 KCNA2 PAK1 FIBP UBE2D2 ETS2 PPP2R4 TENM3 CLTA MSMO1 TUBB4B BIRC5 TKT AZIN1 CDK14 C20ORF24 PGK1 NAA38 HSPE1 COQ10B OLFM2 NEK7 RPL26 PAFAH1B2 DEXI EPDR1 RPL13A ACLY TM2D3 DNAJC6 EXTL2 QDPR SLC35B1 PFDN4 DNAJA1 HS6ST2 RBX1 RPS2 NFE2L1 PIN1 RSL24D1 KCNA1 CD59 UBL5 KCNH5 PGRMC1 CDH13 DNAJC4 GPR98 PCSK1N RPS3A MYL6 ATP5E TMEM155 IQCK PITPNA MMP24-AS1 SLC7A8 GUK1 CA10 NDUFB2 HN1 CDC42SE2 SCN1B FAM219A CDH8 MRPL51 COX7A2L RPL23A TF MIR6723 SPHKAP RASGRF2 MAP2K4 PEG10 LAGE3 RNASEK-C17ORF49 LMBR1 HRH3 KCNV1 MDH2 EFHD2 SYT17 OPCML GAD1 LIMK1 RP11-195F19.5 SH3BGRL2 PHYHIPL HPRT1 SEZ6L TMEM158 ATP5G2 STAG3L5P SLC25A22 RP11-529H22.1 ATP5F1 HPS6 SCG2 NREP MAOB BCL6 COX5A MFN2 H2AFZ HK1 THOC7 TP53I11 PARM1 RPS12 C9ORF16 SYT3 MRAP2 WARS DBNDD1 GRB14 PRDM8 SLC25A11 DKK3 CYSTM1 CSRP1 TPD52 PSMD8 FAM84A CALB1 ARL2BP SOX4 NINJ1 RP11-133L19.3 C4ORF3 YAF2 TLN2 POU3F1 TMEM230 COL5A3 MRPL37 FKBP4 MAGED1 HSPB3 ATP6V0D1 TRAPPC1 FGF12 KCNC3 PRSS3 PET100 RASL11B DGUOK TPGS2 SLC1A2 NDUFA4 GABRQ ATP5G1 NDUFA11 RPS19BP1 TOMM70A NGB SLC7A5 ATP5G3 GNG2 ATP5O FKBP8 PLS3 HDDC2 CLPTM1 RPL38 C16ORF93 KLF2 HSPA4 RGS12 OST4 FBXW11 IGSF21 PHB UBE2F RLIM GSK3A CPLX1 ZBBX NPM1P30 CCDC184 DSTN PDLIM5 AP1S1 MPI EPHB1 CHGB LAMTOR1 ZNF503 DKK1 UQCRC1 RAB11FIP5 NAP1L3 TMEM70 STUB1 ACP1 SERP2 CCDC25 SRD5A1 PRUNE2 YJEFN3 ABCC12 COPG1 RNF208 SLITRK1 PCBP1 GLRA3 BCL11B NOS2 VEGFA RPL17-C18ORF32 PSMB5 HPCA SLC25A5 TSPYL5 CISD1 RAB1A DPY19L1 HCN2 HINT1 NDUFA13 ARL4D TXNDC17 BAALC SPRN ATP6V1C1 TSC22D4 RASGRP1 DRAP1 MANBAL TMEM14A CNP GPR150 PTGS2 AP2S1 DCTN3 PNMA1 FKBP1B NEUROD6 C7ORF50 HMGCS1 BTBD1 OPA1 C2ORF80 LRP1B OPN3 COTL1 C6ORF141 SUCLA2 FBXL16 KLHL12 NR1I3 WNT5A VGLL3 SARDH MRPL52 DUSP6 ARL1 MAL2 SEMA3C RPS5 SLIT1 FASN CCDC124 TCEAL5 HPX PAMR1 NDUFA2 RFC3 HNRNPH2 MAP2K2 SOSTDC1 TRMT112 CDH22 UQCRC2 RFK CABYR STK39 RAP1GAP2 RAB5C CITED2 ATP5A1 RPL36A LYNX1 ADD2 PIP4K2A GTF2B GUCY1A3 FAM71E1 ERH KLHDC3 ALCAM MED10 POLR2K SNX22 DNAJB9 FBXO2 ATP2B4 TBR1 CAPNS1 DLC1 KRAS CXXC4 SRM SNRPE TMEM258 PRDX5 GABARAPL1 ASNA1 PINK1 CRIP2 RHOB SSTR1 SLC39A3 PRELID1 ATP6AP1 GSTT1 CACNG3 CRH COX7B ATOX1 TCEAL2 COPRS TMEM151A UQCRQ IDI1 SPARC TMEM35 UQCRB SLC30A3 SNN GPR158 PSMC3 POLR2M AMIGO2 CAMK2G CACNA1H NDUFC1 C12ORF49 POMP EEF1A2 BANF1 MIEN1 KCNF1 GABARAP CHMP5 RPL26L1 MAGED2 ENOPH1 CYC1 PSMA7 HAPLN4 RPL13 SPON2 COL11A1 TCEA2 BEX4 FAM96B SELM RPL8 C19ORF10 RPL11 PVRL1 SLC25A4 RHOA TLE4 CNRIP1 ISCA1 RPL7 C19ORF43 TRIB2 PCYT2 CNTROB ALDOC SOD1 HIGD1A RPL17 ATP6V1G2 AC244489.1 HNRNPA1P40 PSMB3 RPL18A PCDHA9 PCDHA4 PCDHA10 PCDHAC1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-CO2 MT-ND3 MT-ATP6 MT-ND1 MT-CYB MT-ND2 SYT1 CHN1 MTRNR2L1 ENC1 SNAP25 MTATP6P1 CALM2 THY1 NRGN MTRNR2L12 RNF11 FKBP1A SLC17A7 DPYSL2 TSPYL1 SYTL2 PEX5L PRNP CKB SERPINE2 NDFIP2 RGS4 SERINC3 CA10 PPP3CA CLSTN1 CCK PJA2 RTN3 PREPL MTRNR2L6 MTRNR2L8 USP5 LZTS1 YWHAH PRKACB SMIM13 NPTXR TSC22D1 EID1 GDI1 ATP1A1 GRIN1 CFL1 SYN1 KCNK1 GPM6A VSNL1 FAIM2 YWHAG VGF YWHAB EGR1 DPP6 OLFM1 NARS SARAF SYN2 NECAB1 MLF2 NPTX1 LMO4 CD59 RPL31 SNRPN PCDH8 PLCB1 NDRG4 ARPC4 RASGRF1 TKT MAP1B RTN1 RPL13 PHYHIP JUND WASF1 CTNND2 ATP2B2 DNAJC6 ATP6V1B2 ACTB CREG2 ADD2 CLU MAPK1 SLC9A6 C1ORF115 AK5 NCEH1 FAM134A MT-ND5 PPP2R2B RTN4 DUSP6 GABRA1 CALM3 CAPZB DHCR24 AP1S1 SYNGR1 SEPW1 YWHAZ RHBDD2 GRIN2A LINC00086 PPP2R1A TUBB2A ATP6V0B SPARCL1 MT-ND4L AES PPP1CB PTK2B TUBB4A ASAP1 STX1A ARPP19 HMGCR ATP1B1 PCDH17 RAB3A PGAM1 NUDT21 STMN3 PEBP1 PKM SMS TRIM37 PIK3R1 VAMP2 APLP1 GAPDH BSG ZNF365 CAP2 BASP1 SCN3B OAT DNAJC21 MIR6723 YJEFN3 CBX6 RPL26 DIRAS1 COX4I1 NPTN MAST3 PCSK1N SULT4A1 KCNA1 APP SH3GL2 SYNJ1 ACTG1 CPE BCL11B TUBA1B PSAP SLC6A17 EGR3 NCOA4 TPD52 HSP90AB1 GAP43 DYNLL2 KREMEN2 TMEM155 ARL6IP1 SSBP3 LIMK1 PCDH19 KIAA1045 BAG4 NDUFB3 MZT1 SQLE BIRC5 MANBAL GPR26 NELL2 GPX4 SLC22A17 GCHFR STMN1 CRTAC1 SPOCK2 CNTNAP5 KLC1 UQCRB OXR1 SLC8A2 SUMO3 SERPINI1 YWHAQ ARL1 TMSB4X ATP5I NSF CBLN4 GMFB TUBA1A TOLLIP DYNLL1 IDI1 GRINA GNB1 KLC2 SNCB RAB7A ARPC5L GLRA3 B3GNT1 PRUNE2 ARL8A STRAP PCMT1 TPT1 TSPAN7 HK1 MT3 ATP1A3 CPLX2 SV2C BDNF WARS NR4A1 CIAPIN1 CADM2 NDUFA13 STXBP1 CSDE1 LDB2 PTGDS ENSA NDUFB5 PTPRS SNCA RPL37A SLC25A4 CAMK2G DCTN1 BCAT1 TPRG1L CDKN2D SPOCK1 TERF2IP MTX3 MAP2K2 KIF5A TSPYL4 ITM2B KRAS ALDH5A1 GHITM CHL1 NDFIP1 GUK1 MYEOV2 COPRS CDK5R1 TMEM59L TM6SF1 SCN1A FBXO2 CX3CL1 CNTN1 ATP2A2 MAPRE2 ATP9A MDH2 BSN LYSMD2 PRKCB CAB39 HEY1 SV2B PTMA MAP1LC3A REEP5 SKP1 VAMP1 NUDT4 CRIM1 PRDX3 HSP90AA1 CALM1 PEA15 SNAP91 SLC24A2 UBQLN2 MYRIP PI4KA ZFAND5 DMTN RBX1 TMSB10 DDAH1 HS6ST3 UQCRFS1 PRELID1 KIF1A PPP2CA FTH1 ACTR1A ENO2 PRKAR1A NDUFA5 ATP5C1 LRP1B GSK3A NEFM APEH CORO2B SLC39A10 MAP2K4 MLLT11 DKK3 CHMP4B RPS12 FASN ZBTB18 SLC39A3 TUBA4A MARCKS TUBB4B TMEM130 PFKP CTSD PDP1 SELT PITHD1 SPRYD3 CMAS FKBP8 ZMAT2 PHYHIPL FAM127A FOS NREP TAGLN3 SNX3 JUN ATP6V1E1 NPTX2 ANGPT2 ALDOC ATXN10 RAB27B LINGO1 PPP3R1 RPL41 EDF1 UBE2D2 TOMM20 CTBP1 CYFIP2 KCNF1 PPP2CB PPDPF NAPB MAOB CCDC85B PGRMC1 TEX2 MTCH1 DCLK1 RPL18A NDUFS5 EHD3 CLIP3 CAMK2D LMBRD2 DIRAS2 AMIGO2 CPLX1 IDS NGRN RP11-20I23.1 ATP6V0C PGK1 RPL7 RP11-219A15.1 SERF2 ARF5 ATP6V1G2 PLEKHD1 PCDHAC1 PCDHA10 PCDHA4 PCDHA9 TBC1D15 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL37A RPL26 MT-CO1 RPL36A UQCRB RPL32 RPS4X RAB3B RPL23A ATP1B1 MT-CO2 MT-CO3 CLU RPS27A PPP3CA RPL13A ARPP19 RPL38 SLC1A2 PTGDS GDI1 SEPW1 RPL31 IDS MT-ND4 SPARCL1 RTN4 SERPINE2 PEG10 KIF1A CHN1 SCN1A NPTXR RPL21 CYFIP2 PACSIN1 CALM1 RPL3 EIF4A2 ENO2 NDUFA4 RPS15 ENO1 RPS6 AAMDC STMN4 SCN3B ATP5I CHL1 NRGN ENC1 SLC17A7 UCHL1 RPL41 COX5B YWHAZ NDUFA13 THYN1 SNAP25 PREPL GPM6A OPA1 CAMK4 OAZ1 FTH1 CABP1 MAPK1 COX7C SYN2 YWHAH PRKAR1A HSD17B6 RPL17-C18ORF32 RPL17 DIRAS2 AK5 PRDX3 COX4I1 CBX6 ANXA6 SERPINI1 SLC12A5 HEPACAM LIN7B SCD5 NDUFB8 PEBP1 NGFRAP1 MAPRE2 LMBRD2 WIF1 RPL13 ASAP2 GRIN2A NKIRAS1 TPT1 CLTC STK39 TMEM59L TSC22D1 RPL11 ATP5E WBP2 SPRYD3 NDFIP2 MORF4L2 PRKCE APLP1 GNG3 PEA15 CCK ENSA RHEB CCDC115 CRIP2 PRNP YJEFN3 ATP5G3 EIF1AX VDAC1 APOE HSPB1 SLC1A3 PCDH19 TESPA1 HS6ST3 HSP90AA1 NDUFA5 FAM163B ATP1B2 FOSB ATP2A2 SLIT3 C19ORF43 FGFR3 CAPZA2 LDHB PRKACB ATP1A3 NPNT THSD7A SDC4 SLC24A2 SUCLA2 NRCAM GABRA1 PPP2R4 BANF1 SMS MOBP RPL7 CFL1 ARHGDIG BTBD10 WASF1 TMSB4X EIF1 SKAP2 NSF LPPR4 PITPNA PSAP RSL24D1 SKP1 NAP1L2 KLC1 PKM ARL1 RARRES3 ATP5B FXYD6 SERINC3 IQSEC1 PPDPF GPR56 C9ORF24 PCDHGA5 RAB1A PTPRS RPS19BP1 MAGEH1 PDP1 RPL8 SYT11 SYNGR1 BEX1 ADCYAP1 NCALD NDUFS5 RPL18A DDAH1 C1ORF115 SYT1 TCEAL2 CST3 RPL6 NELL1 RTN1 ATP2C2 TCEB2 TSPYL1 MRPL51 NDRG4 RAB3IP PCP4 BGN CBLN4 ATP2B4 MDH1 SMIM13 NDUFB3 SEPT1 ARL8B RHBDD2 MT-ND2 RP11-44D5.1 GTF2H2C_2 SDCBP NDUFS6 SOD1 VSTM2L RPS3A PSMD12 TEX40 C1ORF52 SARAF CNTN1 ATP1A2 MTRNR2L1 HMP19 PRKCB CNR1 ACTB TMEM70 HSP90AB1 CMAS KLHL5 CRKL KIF21A TIGD4 RPS10 PSD3 MAPK8IP2 LMO3 MRPS7 ANAPC13 PSMD8 MAP1LC3B ATP6V1B2 DKK3 GUCY1B3 MAP1B STMN1 RELN SERPINA3 BSCL2 ARL6IP1 MORF4L1 MTRNR2L6 RNASEK-C17ORF49 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 ENC1 GRIN2A SYT1 CHN1 RP11-111M22.2 MT-CO1 RTN4 NRGN PRKACB RPL38 RAB3B RPL37A GPM6A ARPP19 SLC39A10 RTN3 GRIN1 CALM3 MT-CO2 ATP1B1 UQCRB MT-ND4 RPL36A CADM2 DPYSL2 RPL41 ATP2B2 CDK17 PRNP SERINC1 SERPINE2 ZNF385D PPP3CA SCN3B TOMM20 CALM2 ATP6V0B MT-CO3 ZBTB18 MT-ND3 ARHGAP35 NAPB ANO3 NPTXR RAB2A RPL35 APLP1 CCK SLC17A7 PRKAR1B GNAQ UBA52 DYNLL1 CITED2 BEX1 CLSTN1 YWHAH SH3GL2 KIF5A TERF2IP CAP2 VSNL1 MT-CYB PAK1 JUND MAP1B ARFGAP2 HNRNPA1P40 NR1I3 PCDHA4 HMGCS1 HSP90AB1 NGFRAP1 RHOA PJA2 TPPP COX4I1 SLC30A3 PLD3 PTMA HPCA PREPL YWHAG SNCB SUMO1 MAPRE2 TUBB2A CNR1 AK5 MORF4L2 OCIAD1 COL24A1 PSD3 STMN1 GUK1 BSN ATP5I TMSB4X HS6ST3 GNB1 YWHAB TMOD2 RPS15 CYP1B1 ACTB ARL6IP1 NCEH1 ARL8A RAB6A ATP5A1 TUBA1B PPA1 NAPA ZNF365 TCEAL2 ATP5E RPH3A CISD1 RPL31 SLC8A2 SLC25A5 FAM84A ATP2A2 TSPAN7 NDRG4 CAMKK2 GAPDH COPS8 MT-ND2 CDKN2D SYNGR1 ITFG1 ELAVL2 GDI1 CABP1 SHARPIN HDLBP PNMA2 CDH8 TMA7 RGS4 KCNK1 NPTX1 EIF4A2 LMO4 ATP5C1 CREG2 BAI2 MMD SERPINI1 TSPYL1 ZFAND5 STXBP1 ATP1A1 HMP19 TCEB2 NDFIP2 FXYD6 SARAF GRINA CALM1 MED10 PPP2CB EPB41L3 HSP90AA1 RP11-20I23.1 ATP6V0C BSCL2 PTCHD4 YWHAZ SPRYD3 GHITM UBE2N ARL4D CAMK2G THSD7A CCDC183 MTRNR2L1 PEBP1 STMN3 SYT4 NFE2L1 CAMK4 SLC25A4 OPA1 TIGD4 PNMAL1 RPL11 NCBP2-AS2 RP11-664H7.2 CHMP5 PEA15 CTNNB1 IGSF21 RAP1GAP2 OR6D1P MTPN BDNF NDRG3 NFIA NDUFA4 MGST3 MAGED2 ACTR1A MYEOV2 EDF1 DNAJC5 RPL15 VAMP2 NDUFC2 IQSEC1 PIP4K2A CAPZB CRYZ STMN4 KCNAB1 PDP1 GNG2 DSTN PCBP1 NEUROD2 NEFL S100A6 CCDC85B CPLX1 CYC1 YJEFN3 CA4 SLC12A5 UQCRH RAB3A VSTM2A OLA1 BSG PSMC1 PPP3CB PACSIN1 C1ORF115 CAMK2D CAPZA2 NDUFA5 PRDX3 KLC1 TPD52 TMEM150C NDUFA11 SSBP3 HOMER1 CCDC74A CYCS PTPRN2 MAP4 EFHD2 PKM MAP2K2 TMSB10 SPTBN1 NELL2 CRYM FAM134A MT2A MT-ATP6 SNN ATP9A NDUFA12 PVRL1 MCHR2 UBC MT-ND4L UBE2F PIK3R1 CNTNAP5 COX7B NDFIP1 MAST3 HDDC2 RAPGEF5 WBSCR17 DDN RNF11 PPP3R1 TUSC2 RPS6 FAM19A1 MANBAL SUB1 ATP6V1C1 ZBBX EDN1 TGOLN2 GABRA1 SLC9A1 OXR1 NDUFB2 ADCYAP1 DPP6 PSMA7 COPE CLTC ANXA7 COX7C RTN1 PI4KA RPL13A NCAM2 ZDHHC12 NAT8L PMEPA1 STX1A KLHDC3 RASGRF1 GUCY1B3 SCOC EPHB1 OAZ1 KLHL12 NRCAM TUBB4A CERS6 FGF10 MYL6B TMEM59L KIF21A ARPC4 DIRAS2 SLC25A6 RPS4X RAB11A COX5B NDUFB1 MTX3 DNAJB6 PHYHIP OLFM1 NGEF NDUFS5 RAB6B FASN SYN2 FGF12 TMX4 CLDND2 ATP6V1F FAIM2 TUBD1 APP UBE2D2 CA11 TBR1 SGK223 OPCML RPS27A CADM3 WASF1 SIRPA CD99L2 PGM2L1 AP2M1 UCHL1 LZTS1 RLIM SPOCK2 CNRIP1 ACTG1 TOLLIP DIRAS1 ATP6V1G1 BASP1 ARL6IP5 RHOB IGFBP5 CALN1 FAM127A ACTR6 MT-ND5 HSPA8 NUDT21 CKB HNRNPH2 RPL6 LMO3 RASL11B MDH1 SLC22A17 ENO2 RPS2 KCNAB2 GDE1 NDUFB8 MYOM2 WDR4 ATP6AP1 NEGR1 MRPS21 LPPR4 TUBA4A NTNG1 CPNE8 KCNV1 VAT1L SULT4A1 CHL1 UQCRC2 PPIA ONECUT2 PTGES3 INA SOX9 PHPT1 TSC22D1 MAP2K4 CDC42SE2 SAP18 KCNC2 RPL8 NOP10 TUBB4B FSCN1 RPL21 ALDOA RPL17 RPL3 MIF IDS MTRNR2L6 RPL17-C18ORF32 NSF RPS3A NGRN RP11-219A15.1 PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15 SYTL2 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 CHN1 SNAP25 GPM6A MT-CO3 SYT1 MAP1B ATP1B1 YWHAG RTN4 ENC1 PPP3CA CALM2 MT-ATP6 MT-ND4 SLC17A7 RTN3 SYN2 TUBA1B MT-CYB RTN1 CLU EIF4A2 MT-ND2 SERINC1 SNCA PHYHIP PRNP GDI1 CNTN1 NECAB1 TBC1D15 CLSTN1 MTRNR2L1 BASP1 CHL1 PREPL TPPP VSNL1 RP11-111M22.2 ZFAND5 NAP1L3 RGS4 LMO4 TSPYL1 ACTB ATP6V1B2 NPTN LPPR4 ARPP19 YWHAH PRKACB ATP2B2 PRKAR1A PSAP DMTN DIRAS2 KIF1A GAPDH ARL6IP1 TSC22D1 APLP1 DPP6 PJA2 SCN3B CALM1 SLC12A5 SYN1 CCK MT-ND1 MT-ND3 YWHAZ NCEH1 PPA1 NRGN TUBB HSP90AB1 LMO3 YWHAB KIF5A C1ORF115 CPE PKM MTATP6P1 STMN1 SYNGR1 MTRNR2L12 NAPB MAGED1 ENO1 MTCH1 VAMP2 SLC8A2 TCEB2 SLC39A10 PSD3 APP CAPZA2 SERINC3 ACTG1 BEX1 NPTX1 ATP1A1 STXBP1 CREG2 MSMO1 BSN BRK1 SYNPO OPCML B3GNT1 MLF2 MMD SYT4 OXR1 NPTXR LGI3 CHGB PPP2CB DPYSL2 SPARCL1 CLDND1 TSPYL4 TOMM20 ATP2A2 SUMO2 EGR1 RP11-219A15.1 MAPRE2 VSTM2L CTNND2 CNTNAP5 SNAP91 RPL36A KCNK1 CDK5R2 TUBA1A MTRNR2L8 GRIN1 RASGRF2 MAP4 JUND SCN1A CDK5R1 KLC1 HSP90AA1 AK5 NELL2 GNG2 PCDH8 SPTBN1 FAM127A DNAJC5 C1D UCHL1 NEFL STMN2 COPRS CPLX2 NRCAM FAIM2 ITFG1 OLFM1 SCAMP5 SEPW1 IDS FLOT2 SH3GL2 TLE4 MAPK1 RAP2A PRKCG TMEM59L GSKIP SLC30A3 NAT8L CMAS EPS15 PEX5L CSDE1 ACTA1 NDRG4 ZBTB18 CADM2 ARF3 UBE2M NGFRAP1 CORO2B WDR47 SPOCK2 RAB2A NDFIP2 TUBB4A SARAF PAFAH1B2 WBP2 MORF4L2 COPS8 RPL15 DCLK1 TMX4 PNMA1 NAPA NUDT4 PSMC1 LMBRD2 MAP1LC3A SERPINI1 GNAQ RCAN2 CABP1 PPIA MTPN UBE2QL1 GDA TOLLIP CD99L2 WASF1 RPL12 TMEM130 CAP2 KCNAB2 PIK3R1 DKK3 SCD5 CCDC85B CDH8 MTRNR2L6 ZNF385D RAB6A GHITM VPS35 EIF1B S100A6 ITPR2 NDUFAF2 PNMAL2 RASGRP1 C6ORF1 SLC9A6 MPP1 TKT ARFGAP2 CYFIP2 PSMD12 GABARAPL1 BSCL2 IQSEC1 CD63 RPL35 ATP6V1C1 MTX3 NCDN GPX4 MAST3 SLC25A6 MAPRE3 FABP7 CAMK2N2 SYNJ1 RHEB ARL6IP5 ENO2 MZT2B CHMP5 BEX5 RPS10 ATP5I INPP5F CHP1 RBX1 EIF4G2 ATP5B PGM2L1 MAP1A NWD2 RPL37A SULT4A1 AP2M1 MAP2K1 TUBB2A RAB4A TSPAN7 POLR2K CDC42SE2 HMGCS1 ASAP1 HMGCR GPCPD1 JUN GPR88 ANAPC13 ALDOC EIF1 SOD1 SNRPN MPPED1 SLC38A11 LRP1B SV2B SGK223 MT3 PRDX2 MAP7D2 ARHGAP35 REPS2 PRKAR1B FAM84A ITM2B THY1 ATP5J SYNGR3 CBLN4 PAK1 UBQLN2 RPL23A GUCY1B3 CADPS2 HN1 PLCB1 PCDHB4 DNAJA1 INA ARPC4 C4ORF3 RAB3A STUB1 BIRC5 RPL11 FBXL16 CHMP4B UBE2N SUMO1 ARL8A FTL PCDH17 ATP6V1A TUBD1 C1QBP GPR158 LZTS1 NHP2L1 BTNL9 ARF1 POLR2L NDRG3 APLP2 CREB5 NFE2L1 LDOC1L PFN2 VDAC2 SUB1 OCIAD1 ACTR1A DYNLL2 EPDR1 TM6SF1 RPL38 CYC1 EXTL2 CALB1 CDK17 PRKCB DDAH1 PDP1 EPHA6 BNIP3 GOT2 PLD3 EID1 C1ORF52 TMEM35 CTSD KITLG SGCD CAMK4 PTK2B MB21D2 LYNX1 IDH3A IQCH CTBP1 TBR1 NDUFA13 KCNH5 GSTP1 AP3S1 ZNF365 MARCKS CALM3 VAMP1 FAM219A COPG1 SPRN DDN FAM3C AZIN1 PINK1 SH3BGRL3 FKBP1A FABP5 TMTC4 ROBO3 PRDX3 IPCEF1 CIAPIN1 HAPLN4 PEA15 KCNAB1 RPS28 MT-ND5 HDDC2 CLTA BAALC RAB3C RRAGA WBSCR17 CPLX1 MDH1 FXYD7 NAP1L5 KCNC2 HSPA8 ANO3 SPON2 NDUFA4 COL5A2 CERS6 CEND1 RND3 RPL39 RORB AES LIMK1 FGF12 OAZ1 SERPINE2 NDFIP1 FXYD6 ARL8B MAP1LC3B PSMC5 PNMA2 KCNV1 REEP2 PPP2R1A RHBDD2 BCKDHB VDAC1 TOX2 ENSA FBXO2 ARL4C MT-ND4L GTF3A RAN MAGED2 RPS12 TAGLN3 CAPZB NCAM2 STX1A MLLT11 CBX6 TSPYL5 CCDC158 CDK14 PRPS1 TPGS2 HMP19 PPTC7 CACNB1 FAM131B TM2D3 PGAM1 REEP5 PSMA7 NDUFS6 FARSA CRYM BEX2 EIF1AX IFI6 DNAJB9 ATP2B4 ROBO2 CDH13 EEF1A2 EPHX2 TUBA4A LL0XNC01-16G2.1 HEY1 SPARC CFL1 SYT11 EPHB6 FTH1 CNRIP1 CNR1 CNIH3 RPL31 NUAK1 PEBP1 DYNLL1 PRELID1 WSB2 GRINA DNAJB6 GNB1 ITM2A YWHAQ GABRA1 IGSF21 PTPRS PPP1CB CLTB ADORA1 CLPTM1 STX1B NGEF RHOB NDUFS5 KIFAP3 ADD2 CPNE8 SKP1 MDH2 BSG DCC RAB3B SYTL2 TUBB3 NGRN ATP6V1G2 MBOAT7 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 SNAP25 RPL31 PCP4 RPL21 RTN3 RPS15 TMEM59L PPP3CA COX6C RTN4 VSNL1 RPL32 CALM1 ACTB SPARCL1 MT-ND4 CHN1 CALM2 TMSB4X GRIN1 TOMM7 HSP90AA1 ARL6IP1 SKP1 HSP90AB1 FTH1 MT-CO3 NRCAM MT-CO1 GAP43 YWHAG PGM2L1 YWHAZ SEPW1 CLSTN1 PIK3R1 TCEB1 WBP2 RGS4 RPL11 GPM6A KCNAB2 TMSB10 MT-CO2 PRNP ID2 EIF4A2 RPL37A OLFM1 RPL38 NRGN RPS27A MRPL55 STMN1 PSAP RPL12 ZNF385D RP11-219A15.1 PGK1 MLLT11 FAM127A PEBP1 GRIN2A CALM3 CABP1 HS6ST3 SRP14 RPL7 LIG1 COX6A1 TSPAN7 CDK5R2 ELAVL4 DKK3 KITLG ATP5I PRKACB REEP2 TRIM37 ARPP19 INA APLP2 ATP5B PSD3 EIF4G2 APBB1 SYT1 MAP1B COX6B1 LMO3 OAZ1 RASGRF1 ENC1 TUBA1B ACP1 NECAB1 PAFAH1B2 PREPL SERPINE2 VAMP2 NDUFA4 SMIM13 SCN3B NDUFA13 NDFIP1 CLU TCEA2 NELL2 PSMC5 RP11-195F19.5 OPA1 RAB40B SSBP3 APLP1 TSPYL1 SARAF ENSA SLC39A10 RPS28 CYCS RPL13 RBX1 RPL26 RTN1 ARF3 RCAN2 CADM2 COX7C SERINC1 ATP1B1 MT-ND3 ATP6V1B2 MAGED1 TPD52 ATP1A1 NSF BIRC5 TUBD1 RSL24D1 WASF1 NFIA SERINC3 MORF4L2 ZBBX YIPF3 CAP2 LGALS1 FGF12 CFH RPL6 CDK5R1 NDUFA5 ATP2A2 CTXN1 STMN2 EIF1 ETV5 WASL GUK1 CDK17 TPI1 SLIT3 TXN SNCA LAMP5 PNKD FAM163B SFTPD H2AFZ CREG2 FAM3C ENOPH1 DIRAS2 ACLY ATP6V1E1 TMEM70 C1ORF115 PRDX1 MAP2K4 BAALC HCN2 DNAJC4 LZTS1 CACNG3 NAP1L2 NDUFB5 RPL39 OCIAD1 NDUFS6 LYSMD2 C2ORF80 CAPZB CCDC144NL BEX4 RPL41 FAM219A SPCS2 ERH PFDN4 GDE1 TBC1D7 PHYHIP MT-ND4L PNMAL1 MAST3 ATP4A NRN1 MRFAP1 SYT5 ATP5A1 BNIP3 PNMA1 STX1A CD99L2 PPP1R7 LMO4 SLC1A2 SPP1 CPLX2 GPR26 NCDN WDR47 PHYHIPL HBA2 DDAH1 FAM131B GDA CDC42SE2 CKB RPL13A SLC30A3 AP2S1 AC011043.1 SEMA3C PDE1A NNAT NAP1L5 TMEM160 AP3S1 TUBB2A CHL1 LINGO1 ALCAM NUDT21 TOPORS-AS1 SV2B RPL23A ATP5J TOMM20 RPL8 SPTBN1 RAN C18ORF61 JAKMIP1 DPP6 PRDX5 THY1 RPL15 AK5 CCDC85B SELT FAM174A BEX1 UQCRFS1 MCHR2 RAB3A LMBRD2 SYN2 MAPK1 PPP2CB RPH3A PLEKHA4 EDF1 CCDC58P3 PEA15 MAP7D1 ENO2 MFN2 DYNLL1 PGAM1 C9ORF16 KIFAP3 RNF208 PSMC3 SQLE MTCH1 COPG1 AP1S2 RHBDD2 PRKCB MDGA1 ITFG1 MAL2 NDUFA1 TOLLIP TLN2 BSG DPYSL2 RGS12 SEZ6L S100A6 FXYD6 HPRT1 TPT1 PEF1 PEX5L C19ORF53 NDUFS5 B3GNT1 RHEB ATP6V1C1 HINT1 SYNPO GABARAPL2 NEGR1 BLOC1S1 ATG101 LDB2 BRK1 CTC-575D19.1 SLC22A17 MARCKS FAM84A BDNF HCN1 GLRA3 GUCY1B3 NEFL ATP5E GORASP2 PENK ALKBH7 DNM3 IPCEF1 CPLX1 APP FARSA PHPT1 FXYD7 PEG10 GAPDH TMEM147 NDUFB1 NHP2L1 BAI2 TCEAL5 SNCB MRPL33 RAB6B NFE2L1 FAM134A DCTN1 MAPRE3 CA11 PITPNA NRSN2 NDFIP2 COPS8 PLCB1 PINK1 GSTP1 KLC2 TMOD2 ATP6V0B VSTM2A NPTN ATP5G2 ZMAT2 PLD3 FAM96B OR6D1P NAP1L3 NDUFA2 YWHAH HOPX GLUL GNB1 BEX2 RELL2 SYNGR1 PNMA2 RAP2A MZT1 GOT2 ASAP2 PPP2CA ARPC4 PSMD2 CMAS PSMD12 ENO1 NCALD FKBP1A SERTM1 ISCU SYT17 RPL17 ATP6V0C IDS RPL17-C18ORF32 RP11-20I23.1 EPHB6 BSCL2 RPL36A MIF ATP6V1G2 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-ND2 MT-ND4 SNAP25 CHN1 CALM1 MT-CO3 MT-ND3 SYT1 RTN4 RAB3B RTN1 RTN3 GPM6A EIF4A2 MT-ND1 CALM3 PJA2 STXBP1 OLFM1 PRNP VSNL1 ATP2A2 MAP1B HSP90AA1 NRGN PRKCB TMEM59L PKM MT-CYB CCK SPARCL1 YWHAH TMSB4X APP MT-ATP6 NGFRAP1 ENC1 CLU SARAF TMSB10 HSP90AB1 TUBA1B NECAB1 CALM2 TBC1D15 CKB SLC17A7 PRKACB CLSTN1 GDI1 SLC39A10 STMN1 ARPP19 CNTN1 ATP9A VAMP2 PSAP RAB3A KLC1 RPL17-C18ORF32 PSD3 PREPL ACTB RP11-111M22.2 NELL2 UCHL1 ENO2 BASP1 NDFIP1 OAZ1 BSCL2 TSPYL1 TSC22D1 TSPAN7 CADM2 PTMA PPP3CA ATP2B2 TOMM20 ATP1A1 ATP6V1A CDK5R1 NEGR1 YWHAG NDRG4 ITM2B THY1 SCN3B DYNLL1 NCAM2 ATP1B1 PLCB1 TPPP NEFL PHYHIP WASF1 RGS4 PPP3CB APLP2 ATP6V0B CREG2 GABARAP RAB6B PGM2L1 RHBDD2 ITFG1 FAIM2 CAP2 FTH1 ATP5B PNMA2 PLD3 CTBP1 SYTL2 IDS FXYD6 SERPINE2 PDP1 SYNGR1 PRDX5 TPI1 SRP14 LMO3 VDAC1 ATP6AP2 EGR3 COX6B1 PRKCG PPIA TUBB2A SSBP3 SCAMP5 NAPB GAP43 ALDOA CADM3 SKP1 HAPLN4 TUBB4A LGI3 B3GNT1 SERINC1 BEX1 KIF21A PDE1A STMN2 YWHAB SERPINI1 GRIN2A MAPK1 ZBBX SERINC3 SNCB NPTX1 NFE2L1 SUB1 RPL7 C1ORF115 EIF1AX ARF1 ATP6V1C1 OPA1 MTATP6P1 FIBP DYNLRB1 PIK3R1 NGRN CFH KCNAB2 ATP6V1F BEX4 FAM219A SCD5 AP1S1 NRCAM HSPA8 ATP6V1B2 STMN3 SEC61G DNAJC6 ATP6V0E2 GDA MTRNR2L12 CISD1 SGCD CCDC85B LZTS1 ATP6V0C VDAC3 DPYSL2 PFDN1 LYNX1 CAMKK2 DSTN SLC22A17 NCALD DKK3 ARL6IP5 NDUFS5 NPTXR ITM2C RP11-20I23.1 EPS15 DNM3 VDAC2 FKBP1A PPP1CB KIF1A RASGRF1 TGOLN2 AP3S1 PNMA1 ADSS AK5 NDUFA13 SLC12A5 DNAJC5 RPS28 NAT8L CDC42SE2 BEX2 FASN RPL41 PPP2R1A BAI2 ARL8B REEP5 GLRA3 RPL13 CHL1 GOT1 STMN4 SIRPA RPS15 CLTC SUMO2 SCN1A CDK14 GMFB ANXA7 SYN2 SLC8A2 MTPN TESPA1 TMEM132D TSPYL4 NUAK1 STX1A LANCL1 HMGCR CABP1 APLP1 NAP1L2 PACSIN1 OLFM2 GUCY1B3 PCBP1 ATP2B4 ANO3 PEBP1 DCLK1 GUK1 PCDHGA10 NUDT4 PCDHGA5 ARFGAP2 KCNK1 CDK17 INA CAMK4 FBXL16 NHP2L1 TCEAL7 C19ORF70 UQCRQ MAST3 DYNC1I1 DPP6 MTRNR2L1 SV2B MAP2K4 NDFIP2 RAB1A RPS6 UBE2N UQCR10 TMA7 OXR1 TMEM155 CRIP2 RTN4R RPL15 MANBAL UQCRC2 ANXA6 UQCRH ARHGAP35 C9ORF16 NFIA BSN RPH3A DYNLL2 MZT2B GADD45GIP1 STX1B SLC25A4 DMTN FAT3 COX4I1 TAGLN3 SLC1A2 SCN1B RAB2A PPP2R4 EPB41L3 VPS35 CNTNAP5 FBXO2 CTNND2 AES FBXW11 MRFAP1 BNIP3 EFR3A SNCA TENM3 PIN1 KCNC2 C14ORF2 MIEN1 RAB3C PEX5L SULT4A1 FAM84A NPTN SYT11 CRYM UBE2V2 RPL11 FABP3 MORF4L1 RPL39 CFL1 GRIN1 RAB6A CAMK2G FSCN1 CBX6 COX7B MLLT11 PHYHIPL NRSN2 TCEA2 RPS26 PARM1 GNB1 FAM19A1 PGAM1 ENO1 ENOPH1 FKBP8 YAF2 PSMD12 RPS3A C6ORF1 CAMK2D RPL26 CHGB PFN2 PEG10 GNAQ DCTN1 TRIM37 NCEH1 CBLN4 IQSEC1 LAMTOR5 PTK2B SPOCK1 FTL CERS6 FGF12 USP5 KITLG BCAP31 NEUROD2 YWHAZ FAM127A PDCD5 TOMM7 MYL6B OCIAD1 ATP1A3 SNRPN KIF5A KCNMB4 CYCS CLIP2 TUBA1A SLC6A17 KIAA1045 SELT C14ORF132 RPL18A PTPRN2 JUND NDUFB5 KIFAP3 CTNNA2 TCEB1 RAP1GAP2 OLA1 NDUFB4 ELAVL4 EIF1B MLF2 PAFAH1B2 EGR1 ATRN PSMD2 PMEPA1 WSB2 TRIM35 GABARAPL2 CAPZA2 PET100 ZBTB18 TOLLIP EDF1 RAP1GDS1 GSKIP GRM3 PGRMC1 RAB40B SEZ6L2 C1QBP GPX1 SNX3 UQCRC1 SEPW1 C1ORF52 NMNAT2 ATP5G1 HMP19 HINT1 PODXL ATP5G3 NREP SOD1 RBX1 SEZ6L PRKAR1B RNF208 ZNF385D BIRC5 NSF OR6D1P AC244489.1 LMBRD2 HIST1H1E MGST3 MED10 PSMC3 SLCO4A1 SQLE LYSMD2 LAMP5 COX17 PHF11 RPL38 MAGED1 MSMO1 MIF RPL37A HSPE1 FIGN SH3BGRL2 ARL6IP1 FAM134A RPS19BP1 ALKBH7 TMEM147 OPCML CDH13 TRHDE RCAN2 MDH1 HSPB8 MFSD2A ARL4C AP2S1 SYNPR MRAS TMTC1 SYNGR3 PRDX3 CA10 DGAT2 ELMO1 MT-ND4L MMD INPP5F TERF2IP SCN4B RASGRF2 NDN TMEM35 RAB7A TP53I11 TBCA MTHFS SLC38A11 COX8A CSPG4 MPPED1 CORO2B MFSD6 CLMN MAL2 OPRM1 ZCCHC12 ID2 TCEB2 CORT SYT4 CDKN2AIPNL CCDC74A IDH3A NDUFA5 TXNDC17 OPN3 NDUFB1 TMOD2 REEP2 UHMK1 GHITM TMSB4XP4 DDAH1 SLC9A6 BTBD1 LINC00116 ZBTB20 RANBP1 CAB39 TMLHE SLC25A11 IL10RA ACP1 EIF4G2 ZNF365 CYFIP2 ADD2 TPD52 SCG2 LRRC59 MT-ND5 MAGED2 SYT17 KIF3C RAP2A RLIM SSTR1 CKS2 ACTR10 APBB1 LDHB PI4KA SYT13 RORB PPA1 CLDND2 KLHDC3 ONECUT2 SNX17 SYNPO RPL35 TKT PFKP RABAC1 PRKAR1A CA11 TUBB4B HSPA4 WBP11 MTRNR2L8 TAF7L HDHD1 PLS3 TPRG1L PCMT1 ATP5A1 ACOT7 NAP1L3 IGFBP5 RHOB GPR56 UBL5 CNP ATP6V1G1 TMEM14A PPP2CB RAB11A RHOA PCSK1N RASGRP1 CALB1 CD99L2 HSPB1 LMO4 MEGF11 RPL8 MAP1A C16ORF93 NEFM C11ORF31 CRKL WARS NHP2 SUMO3 MARCKS TMEM120A TRAPPC1 LAGE3 SLITRK1 B3GALT2 NEUROD1 YJEFN3 TMEM141 UBQLN2 C3ORF80 PRDX1 MBP RPL31 CDH8 PPP2CA ARPC5L BRINP3 PPP2R2C TOPORS-AS1 ATP1A2 ADCYAP1 TEX2 SNAP91 PSMA7 ARHGDIA H2AFZ FARSA GABRA1 RPS27A ACTG1 SGK223 ETFB EPHA6 HTR2A CDS1 SNAPC5 SUMO1 ISCA1 AP2B1 AMIGO2 ATG9B COX6A1 RPS12 HK1 EID1 MAPK8IP2 SYN1 KRAS FXYD7 CX3CL1 RNF11 FAM19A2 DNAJA1 CAPNS1 CCT5 ARHGAP29 PAM DLD ARF5 MFGE8 CHCHD2 OLFML2A FAM96B FOSB SPTBN1 HOPX SELM ARL1 CXCL14 CDK5 ZCCHC17 NARS NDUFA12 TXN GAPDH TIMP2 AP2M1 IDI1 GNG3 AKAP12 FAM3C TMEM258 BCL11B CD59 UQCRB ATOX1 PCDH8 THSD7A GABARAPL1 RPS4X C19ORF53 BSG ATPAF1 OAT BANF1 MMP24-AS1 MCHR2 MAOB CEND1 PTPRN LDOC1L CHMP4B RAPGEF5 ARL8A PMP2 EHD3 PAQR8 CPNE4 ADAM23 ANAPC13 CBLN1 ZFAND5 HN1 C4ORF3 MYL6 NDUFB11 SLC25A6 STRAP HMGCS1 ARC MTX3 CITED2 CA4 POLR2J C16ORF13 NAP1L5 CLIP3 COX5A HNRNPH2 CADPS2 CFL2 EDNRB CD63 PGD ATXN10 TMEM151A CNRIP1 PNMAL2 COX7A2L RRM2B PROM1 WBP2 PPARGC1A CMPK1 PVRL1 PCDH19 PSMC5 IPCEF1 SMIM13 KCNA2 UBA52 PLA2G2C SKAP2 PSMB5 MTCH1 PHB AZIN1 D4S234E BAD PITPNA MORF4L2 NOP10 WASL HPRT1 CAPZB NDUFAB1 RAB4A C7ORF50 CTSD WBSCR17 FAM149B1 NCDN EIF1 BCAT1 NDUFAF2 BRK1 ENSA RAB11FIP5 CPLX2 OST4 CCDC115 MRPL55 PITHD1 ATP5J2 NBL1 PRUNE2 BHLHE40 ATP6V1G2 RPL3 B2M TMEM191A SERF2 RP11-219A15.1 JAKMIP1 TUBB3 EPHB6 RPL36A SSTR2 TUBB MBOAT7 PCDHA9 PCDHAC1 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-CYB MT-ND4 MT-CO1 MT-ND3 MT-ATP6 MTRNR2L12 CALM2 MTRNR2L1 MT-ND2 SNAP25 CALM1 PEBP1 MT-ND1 RPL31 HSP90AA1 ZNF385D SYTL2 RAB3B TBC1D15 RPL41 VSNL1 SYT11 CHN1 NCDN PPP3CA PRNP MTRNR2L8 THY1 PHYHIP RHBDD2 STMN2 CADM2 WASF1 ENO2 BIRC5 HNRNPA1P40 VDAC1 GDI1 MT-ND5 ATP5A1 CHL1 PPIA YWHAH RTN4 RTN3 MT-ND4L PREPL IDH3A APP PEX5L ANKRD20A11P PRKCB CAPZA2 RPL6 DPP6 RP11-219A15.1 CLSTN1 ARPP19 FAM134A PSAP SKP1 RPL37A RP11-111M22.2 DNAJC21 NR1I3 LRP1B SLC9A6 SNCA DSTN TRIM36 OR6D1P ATP2A2 GNG3 TPI1 HSP90AB1 UQCRHL RASL11B SPOCK2 SLC39A10 NPTX1 PFDN1 SLC22A17 LAMP5 GAPDH TOMM20 AZIN1 SLC19A1 PTMA ATP1A1 RNF208 ROBO2 ATP2B2 APLP1 MAP2K4 NDUFA12 DNAJB6 SSTR2 MAPK8IP2 ATRN CFH EGFL7 ARPC4 NDUFC2 CA11 UQCR10 KCNA1 BEX4 NECAB1 SYT1 CTNNB1 DIRAS2 MED31 AIMP2 CAPZB STK24 WASL AP2B1 OPA1 TMEM130 GLIPR1 ANO3 PELI3 FSCN1 SERPINE2 MTND1P23 CHMP5 MTATP6P1 PTPRN HCN1 GPM6A MTCH1 PTGES3 EPS15 PTPRS RLIM ACOT7 EIF1AX PTK2B NELL2 RPS27A VAMP1 BEX5 RPS2 GNB1 HOMER1 VPS35 AKAP12 RAB40B EPHA6 RGS5 DRAP1 NEUROD1 AES ELMO1 YWHAB COPS8 ATP5E GORASP2 DHCR24 EDIL3 SEPT4 ITM2B PSMC1 BAG4 MFSD6 MTRNR2L6 AP2M1 GRIN2A TMOD2 ALDH5A1 HK1 ETS2 RHOB GPR88 PCDH19 YIPF3 TMEM35 RIN3 ACTB DKK3 MLLT11 TMEM70 DLX1 TPGS2 PDE1C HOPX TNNT2 SELM CCDC154 TUBA1B NGFRAP1 CCDC169 CFL1 CCK NAA38 NEFH FAM19A1 ZCCHC17 KCNK1 WBP11 STMN4 SV2B RNASE1 OCIAD1 BCL11B PNMA2 RAB1A RAB6B NFIA GDA PNKP SERPINI1 FBXL16 RTN1 RPS28 EIF4A2 KCNA2 STXBP1 TMSB10 ZBBX NDUFB1 SYN2 CNTN1 NDFIP2 MAPK1 VSTM2A PSMD12 BEX1 SOX6 BAALC CD99L2 PCDHA10 COX17 SYT13 TMSB4X VSTM2L SERINC1 CLU SLC25A5 SLC6A1 PAM ARF1 RNF11 KIFAP3 RASGRF1 EFR3A ATXN10 GABARAPL2 WLS MLF2 TPD52 MTPN CABP1 LMO3 EIF5A2 HMGCR TOMM70A HDHD1 RPL35 SARAF YWHAG STX1A ARF5 UQCRC2 BSCL2 GABARAP RPL3 NGRN RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 MT-CO2 CALM1 MAP1B CALM2 MT-CO3 SYT1 RTN3 TUBA1B CHN1 SYTL2 FTH1 CCK ARPP19 ATP1B1 GAPDH TMSB4X MT-ND2 YWHAG ENC1 NECAB1 YWHAH CLU OLFM1 GAP43 NGFRAP1 ZNF385D APP RTN4 IDS MT-ND4 NRGN TMSB10 ACTB RTN1 PKM CALM3 PPP3CA MT-CYB PSAP SPARCL1 THY1 CKB PREPL GRIN2A GPM6A RP11-111M22.2 STMN2 NEFL RAB3B DYNLL1 SLC17A7 TSPYL1 YWHAZ EIF4A2 HSP90AA1 PEBP1 CLSTN1 DCLK1 TMEM59L ENO2 MT-ND3 HINT1 NAPB ARL6IP1 MT-ND1 FGF12 CREG2 USMG5 RAB3A TUBB2A ATP6V1B2 COX4I1 FAM127A YWHAB HSP90AB1 ATP5E NRCAM ATP5B PLCB1 VSNL1 CADM2 STMN1 MTRNR2L12 MDH1 CFL1 AP2M1 TAGLN3 ATP1A3 GABRA1 EIF1 SLC39A10 ISCU NEFM CABP1 UQCRB CHL1 SNRPN NCALD PDP1 NDRG4 PGAM1 TPI1 SNAP91 MT-ATP6 UCHL1 BEX4 CPE BASP1 PRKACB ATP2B2 SEPW1 COX6A1 OAZ1 OXR1 TSPAN7 STXBP1 APLP1 KLC1 COX7C ATP1A1 PI4KA PRKAR1B ATP6V1F SARAF LMO3 NDFIP1 LMO4 NDUFA4 SNX3 RPL41 COX7A2 NPTN NEGR1 C14ORF2 PFN2 AK5 RPL13A NELL2 NUAK1 PRKAR1A PRNP PPIA SNCG NDUFS5 PAFAH1B2 PIK3R1 GNB1 UBA52 SERF2 EIF1AX SLC22A17 NPTX1 RPL32 CSDE1 BEX1 PJA2 SCOC CDK5R1 CA11 RPL36A SCN3B GRIN1 GDI1 VAMP2 RPL8 TMA7 GHITM SH3GL2 FTL SERINC1 UQCRH MORF4L2 ARF3 MLLT11 TOLLIP ACTG1 MORF4L1 CA10 C19ORF70 CCDC85B PAK1 RGS4 PRUNE2 RPL21 RPL17-C18ORF32 PGK1 RPS28 GRINA MMD PPP2R2B ATP6V1A RPL26 TMX4 CLTC CADM3 C11ORF31 NPTXR RPL31 PCDHA4 TSC22D1 HMP19 DPYSL2 MTPN SEZ6L DNAJC5 NAT8L CEND1 SYN1 PTMA ALDOA PLD3 LDHB QDPR NAPA RHBDD2 ENSA RHEB NDUFA1 DKK3 CAMKK2 ITM2B CAP2 PSD3 SLC24A2 SYT13 PRKCB NDUFA13 ITFG1 MTRNR2L1 MRFAP1 RPL12 OAT EID1 NDUFC2 ATP6AP2 APLP2 TCEB2 RAP2A SULT4A1 TMEM130 HK1 PIN1 RP11-20I23.1 ATP6V0C CRYM KIF5A SNCB BAI2 ATP5A1 CAMK4 MAP1A KIF1A FXYD6 PINK1 CAMK2G PHYHIP PCMT1 RABAC1 MTCH1 CDH8 RPL15 NAA38 SERPINI1 PPP3CB RORB RPL18A CNTN1 RPL13 NGRN ARL6IP5 NCDN COL5A2 GABARAPL2 ATP6V0E2 UBE2V2 CAMK2D ATP2A2 SRP9 FXYD7 GDA GNAQ DYNLT3 DCTN3 SNCA GLRA3 RPS27A RAB40B WBSCR17 ADD2 BNIP3 GLO1 SYT5 FAIM2 DNAJC6 WASF1 GNG3 HS6ST3 C1ORF115 NGEF REEP5 CDC42SE2 PNMA2 SOD1 VDAC1 RAB3C IPCEF1 MYEOV2 CAPZA2 BIRC5 SKP1 TPD52 NCEH1 SV2B TOMM20 RPS15 SCN1A UBB MFN2 WDR47 MT3 ZFAND5 NKIRAS1 ATP5G3 MAP2K2 RPS6 MAP2K4 ELAVL4 UBE2QL1 PPP1CB PRDX1 PPP2CB NDUFB1 SEZ6L2 PRSS3 BRK1 ZBTB18 ATP6V1C1 EPDR1 RAPGEF5 MAPRE2 IGSF21 ELAVL2 RPL3 SRP14 COX7B NAP1L5 TBCB SYT11 MAPK8IP2 ATP5J2 GPX4 PSMA7 PPP3R1 YJEFN3 TCEAL7 CDH13 MAGED1 PGRMC1 NCAM2 DNAJA1 SYT4 CAB39 SYN2 DYNLRB1 MAPK1 PPA1 SERPINE2 PEA15 NRN1 ANAPC11 TMEM14A C9ORF16 LPPR4 SELM SNX10 MAP1LC3B TMEM258 TUBA4A MTRNR2L8 UQCR10 KIF21A ATP5H PRDX2 RAB11A CDK14 FAM219A LYNX1 FBXO2 DIRAS2 KRAS ATP9A ITM2C SPCS2 ZNF365 BSN HSPA8 TXN ATP5O ADAM23 SERINC3 KCNK1 AES RSL24D1 COX7A2L TBCA EPB41L3 RPL11 HMGCS1 SMS CD59 RPL37A TRMT112 RAB6B CPLX2 RCAN2 HIGD1A NDUFA2 PTK2B C1ORF52 NR1I3 GABARAPL1 EFR3A MRPL33 DPP6 NUDT21 MAL2 HMGCR CRIP2 FKBP4 FAM134A RAB6A HOPX SPTBN1 KCNAB2 ACTR1A GABARAP UROD CHCHD2 TUBA1A FAM84A CDH22 SNN MYO1B TUBB4A HPCA PPP2R4 ATP6V1E1 KIF3C TEX2 MYL6 UBE2E3 OCIAD1 CYCS OPA1 VPS35 AP2S1 PSMB5 GMFB SLC35B1 PFDN4 MPC2 TMEM35 SPRYD3 TSPYL5 AP3S1 DYNC1I1 NAP1L2 NTNG1 BANF1 BSG SELT CX3CL1 CTNNB1 FAM96B GPCPD1 TRAPPC1 MLF2 RPL7 UBL5 TPGS2 MAST3 LDOC1L CHGB GDE1 DCTN1 SLC38A11 TERF2IP SYNJ1 SAP18 NARS GOT2 TUBB4B PTPRN SUMO2 PHYHIPL HSPE1 FKBP8 RAB1A OXCT1 HOMER1 STX1A LIN7B PEX5L LIMK1 PPDPF CD63 DSTN ATP5I INA UQCRC1 NFE2L1 TCEB1 CTNNA2 NDUFB5 SIRPA CERS6 SCAMP5 FIS1 DYNLL2 NSF CDK17 SLC12A5 POLR3H BEX2 D4S234E H2AFZ RNF11 CTXN1 GUK1 EGFL7 LRRC59 TRHDE ID2 RAD23B ATP6V0D1 APBB1 ARHGAP35 PAM ATP5C1 PNMAL2 OLA1 NDUFA11 GAD1 VDAC3 NDUFB11 FKBP1A RFK CARTPT RP11-195F19.5 MBOAT7 MSMO1 STRAP COX6B1 KLHDC3 ARHGDIA ATXN10 INPP5F NDFIP2 DGUOK ARF1 NHP2 ETFB MTATP6P1 PRDX5 ELMO1 PPM1A CORO2B NDUFA5 WBP2 ATP5G1 SLC9A6 CYB5R3 GTF2H2C_2 DNAJC21 BSCL2 TUBB3 HAPLN4 PCDHGA5 TCEAL2 C4ORF3 EHD3 NNAT COX6C SEC61G LMBRD2 BCAP31 RANBP1 RLIM CD99L2 SMIM13 PRKCE CTC-575D19.1 WARS PELI3 HEY1 CHP1 OST4 TMEM230 SLC38A1 PDE1C ESYT1 MAP7D2 SDCBP PCBP1 TLN2 BAD TKT INSIG1 SPOCK1 GPX1 BCAS2 THOC7 HSPA4 FAM19A2 KIAA1045 CLTA WSB2 PLEKHH2 KLC2 CTNND2 MRPS7 PTGDS RPS4X NUDT4 SLC7A1 C19ORF53 TMEM155 JUND PITHD1 NBL1 STUB1 DDN NDUFAB1 GSTO1 UHMK1 RPS10 ARL8B SYNPO SUMO3 RAMP1 PFN1 ALDOC ARHGDIG RASL11B EXTL2 TMEM191A RHOB SRD5A1 PPP2R2C ASAP2 NDRG3 NDUFB2 LDOC1 PET100 LAMTOR5 ARPC5L CYFIP2 CNR1 CLIP3 SCN2B MT-ND5 B3GNT1 WBP11 ARF5 PGM2L1 UQCR11 YWHAQ RP11-175B9.2 PCSK1 HAMP FBXL16 BTNL9 DNAJB6 RPL38 DIRAS1 PSMB7 KCNV1 RAB4A MYL12B ZCCHC17 TCEA2 RBX1 PPP2R1A TSPYL4 ATP5J FAT3 RHOA RNF181 NHP2L1 FASN SLITRK1 OLFM2 CHMP4B CDK5R2 CAPZB BAG4 POLR2K FAM174A REEP2 RNF208 ROBO2 CLPTM1 COL24A1 CAV1 TPRG1L DNAJB9 PRDX3 NEUROD2 MIEN1 KIFAP3 ATRN TOMM70A RAB7A ANAPC13 CTSD DRAP1 GOT1 SLCO4A1 EIF4G2 SYNGR1 PITPNA TMEM150C EPHB6 LINGO1 MRAS SSTR1 CDK5 RAB2A LZTS1 SLC25A22 RPS2 AZIN1 FBXW11 MIF OPCML NDUFB7 SYNGR3 GPR171 RAB11FIP5 MRPL12 CMPK1 PFDN1 MRPL47 CBX6 PLA2G2C GPR6 LINC01296 PACSIN1 ATP6V1G1 UROS TPT1 MAP4 FAM19A1 TCEAL5 RAP1GDS1 SSTR2 SIGIRR PDE3A REPS2 EIF1B PTPN20A CPNE4 ETS2 ASPDH ATP6V0B SNAPC5 CPNE8 BAALC PSMD12 RPL6 DMTN SMIM12 MRPL51 NMNAT2 EGR3 SKAP2 SUMO1 ATP5F1 COL6A1 PFKP SLC25A4 CHMP5 PEF1 PNKD MYOM2 TXNDC17 RAP1GAP2 SH3BGRL3 MZT2B EPS15 S100A6 LMBR1 SPOCK2 ENO1 TESPA1 CADPS2 ARFGAP2 AC244489.1 ATP6V1G2 MTRNR2L6 C18ORF32 RELN OR6D1P TUBD1 OPRM1 MTND2P28 SCN1B GPX3 GPR150 CALB1 PIP5K1B PPIF MGST3 NDUFAF2 KCNMB4 RTN4R TRIM47 IDH3A RRM2B DCDC1 PNMA1 MPP1 RAN KITLG FIBP SP9 RAB5C KCNA1 KCNC3 MAGEH1 MTX3 TGOLN2 DCC SRM ACAT2 MBP MANBAL CA9 PCDH8 UQCRFS1 FNDC4 COL11A1 VDAC2 HNRNPH2 ACLY PRKCG RPS5 SGCD FUNDC1 HBQ1 HSPBP1 FJX1 AC011043.1 SPRTN DEPDC1B MYH7 CKS2 TMEM179B LAGE3 DUSP2 COX8A TCEAL3 NDN CDC37 CNTROB RPL35 TMTC1 COBLL1 GLIPR1 PARP14 WASL ASNA1 NAP1L3 ZNF880 COPS7A CYC1 ACP1 ACOT7 PCP4 CMAS EPHA6 KCNA2 SNX17 CYP1B1 TOMM7 TMEM147 LANCL1 PPP1R7 NRAS CDKN2D PAQR9 FAM162B TTN DHCR24 TMEM200C ONECUT2 RAB27B DMKN CCDC110 ERH GFRA2 KLHL12 RPS19BP1 ARL4C NDUFB10 RASGRF2 NIPA1 FOXP2 NEUROD6 ATPAF1 RP11-264F23.1 ANXA7 TM2D3 EDNRB SYT3 WNT5A MAPRE3 SAMM50 ZMAT2 TEX15 TPPP VSTM2L HTR1F MZT1 PSMC5 LGALS1 AGA NOTCH3 SLC9A9 MPPED1 ADSS FSCN1 NCBP2-AS2 ARL4D RRAGA MCHR2 BEX5 C7ORF50 HN1 CPLX1 DLD DDAH1 POMP ABHD14A SUB1 PCSK1N VSTM2A FGF10 TNFAIP8L3 PVRL1 NDUFB4 TOX C1QBP DNM3 SQLE CLSTN2 LINC00116 SNRPE HTR2A RPL17P50 SCD5 SLC30A3 ERVMER34-1 MED10 RGS12 C2ORF47 SCG2 EIF5A2 RPL10A ZNF385A SLC7A8 PTPRS PSMD8 ATOX1 YAE1D1 CIAPIN1 ABHD8 NOV UBA1 NDUFA12 COL12A1 MYRIP AP1S1 C1D CISD1 FAM149A CTBP1 TDRD5 UBQLN2 PRDM8 HPRT1 ACTR10 SYNPR COX5A MAOB CLIC5 GPR98 GADD45GIP1 ATP2B4 UQCRQ PEG10 GDF10 TMEM144 C2ORF80 EDIL3 GUCY1B3 DAB2 GRM3 TLE4 SLC6A17 CETN2 TBR1 PTPRN2 NELL1 MEGF11 DLC1 SLC25A6 C9ORF24 CHRDL1 ATP6AP1 FABP3 UBC RASGRF1 THSD7A C6ORF1 TMEM11 BHLHE40 ARPC4 MRPS21 CRTAC1 PDCD5 C19ORF43 MT-ND4L C3ORF80 VEGFA ABCA8 COX5B CACNG3 SGK223 PSMC1 PTGER3 NREP NEK7 PLA2G4D IFT52 GPR158 MET VAPB TMEM141 CACNA2D2 AP2B1 KCTD9P2 GSTT1 CLIP2 MAP1LC3A RPS12 NDUFC1 HCN1 MRPL55 SH3RF1 BTBD10 ADM SPOCK3 RNASEK-C17ORF49 CAPNS1 ATP5G2 BCKDK SH3BGRL2 ISG15 ENOPH1 SEMA3A PPP2CA IFI6 LRP1B TMEM70 IGFBP6 CNRIP1 USP5 RP11-133L19.3 RP11-632C17__A.1 C19ORF10 C14ORF132 FAM131B AURKAIP1 ITPR2 GPATCH4 C20ORF24 GRB14 CDH7 NGB SLC2A1 MIR6723 PGD APOD BHLHE22 PRELID1 EGR1 PALD1 PRRX1 CCDC124 NDRG2 COPE STX1B FIGN SLC1A2 POLR2M BLOC1S1 HBA2 JAKMIP1 HBA1 KRT17P6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 PPP3CA MT-ND2 MT-ND3 MT-CO2 MT-ND4 CALM1 RPS26 SNAP25 CHN1 RPL37A TSC22D1 MT-CO3 NPTX1 MT-ND1 UQCRB AP2M1 VAMP2 CALM3 EIF4A2 LAMTOR5 RPL31 SERPINI1 NR1I3 ZFAND5 ARL1 UCHL1 MAP1B GRIN2A PREPL CADM2 ACTB TAGLN3 SERINC1 PLEKHG3 RPL38 RPL32 ARPP19 TMSB10 RHBDD2 NELL2 NECAB1 RPL35 CYFIP2 APLP1 CHCHD2 FLOT2 RTN1 UBB TPT1 RPS4X RPL8 MED31 KITLG PRNP NCDN TMA7 JUND BSG PNKD RLIM ATP5G2 RTN3 CYP26B1 GUK1 PSMC3 PPP2R1A RPL23A RPL39 CHL1 COX7A1 ITFG1 PGM2L1 SEZ6L CPE SYT1 SERINC3 MAP7D1 SCG2 BEX2 HAPLN4 DKK3 PAK1 CDK5R1 ACP1 ENSA TCEA2 GAP43 NAP1L3 CAP2 MT-ATP6 PPP1CB ACTR10 IPCEF1 PHYHIP FAIM2 ENC1 LMO3 ATP6AP2 UBE2F RPS12 PCBP1 CNR1 LINGO1 CLU CACNB1 YWHAH STX1A TSPAN7 TPD52 NDUFC1 PPA1 SCN1A ATP2A2 PIK3R1 MT-CYB SLC17A7 NDUFA12 UQCRH SLC38A11 RPS27A DNAJB6 SRP14 MAPRE3 OCIAD1 MTND2P28 NRN1 GHITM RPL21 SERF2 TRMT112 RP11-219A15.1 CFH HNRNPA1P40 SYTL2 ZNF385D RAB3B MBOAT7 RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 SYT1 MT-CO1 CHN1 MT-CO2 RTN4 SNAP25 GDI1 MT-CYB MT-ND3 PRKCB GABRA1 MAP1B YWHAG NRGN ENC1 PJA2 CALM2 RAB3B SLC12A5 ATP1B1 ACTB MTRNR2L1 MT-ATP6 CABP1 MT-ND2 SYT11 ENO2 APP PLCB1 STMN2 GRIN1 SLC17A7 THY1 DPYSL2 ATP2B2 PPIA CDK5R1 ATP6V0B TSPYL1 PRNP RTN1 CKB MTRNR2L12 RTN3 SLC39A10 PPP2R1A MAPRE2 PKM BSN MTPN SERINC1 DYNLL1 MTATP6P1 ARPP19 SV2B PPP3CA PGAM1 TUBA1B MTRNR2L6 RGS4 OCIAD1 IDH3A RPL41 C18ORF61 COX7C SCAMP5 PPP2CB IDS NDUFA13 STXBP1 NGFRAP1 JUND PDP1 ATXN10 PPP2R2C COPS8 CMAS RPL15 FGF12 NAT8L NDUFB2 CCK PNMA2 TPGS2 KCNA1 DKK3 RAB2A LMO4 MAPK1 GDA APLP1 NCDN WBSCR17 DNAJB9 SLC24A2 FBXL15 LGI3 KLC2 CDH13 ARL8B CNTN1 BSG WDR47 ATP1A1 SERINC3 FAM127A CALM1 GPM6A SYN1 RPS27A SYT2 OLFM1 GAP43 NUAK1 ALDOC NARS MT-ND5 MT-ND1 ATP9A PHYHIP VSTM2L WASF1 CALM3 CADM3 PSMD12 CCDC85B MT-ND4L ELAVL2 MYEOV2 CHL1 UQCR11 PSD3 MZT1 UQCRC1 NDRG3 BIRC5 PTK2B SIRPA GUCY1B3 THYN1 RAB3A RPL31 UQCRB MTRNR2L8 PRKACB PCDHA4 PCDHA9 RAB11A TSC22D4 SEZ6 UBE2V2 ETFB MAPRE3 CDC42SE2 CLPTM1 OLA1 TPT1 EID1 TBR1 TMSB4X OPA1 OLFM2 WBP11 CADM2 PARM1 MT3 VGF COX7A2L RPL8 RPL26 DGUOK ATP6V1E1 COA4 WNT5A MAP1A RAB1A DNAJA1 BAG4 CLU MORF4L1 YAF2 ATP1A3 NAPA LINC00087 ETS2 NDUFB5 ZFAND5 ALCAM CLTB CD63 FTH1 RAP2A CCDC61 RTN4R HOMER1 RAB6A ARHGDIG PAM PITHD1 DCLK1 KCNK1 C9ORF24 STMN1 COL24A1 CACNG3 RASGRP1 JUN TESPA1 TUBB4A PEBP1 MAP1LC3B BOC ASAP1 GFRA2 MDH1 TMX4 GMFB SPOCK1 NEFL SPOCK3 SLC30A3 VAMP2 INPP5F C12ORF49 PPM1A TCEAL7 SYT5 PSMC1 CFH ACTG1 GABARAPL1 FAM19A1 JAKMIP1 DDAH1 EGR1 MRPL51 PREPL PDCD5 EPS15 TBCA RASGRF2 SNCA RASGRF1 ATP6V0D1 KCNA2 RPS5 DUSP6 ONECUT2 BNIP3 VSNL1 COPRS FKBP1A GRIN2A LANCL1 NEFH YWHAQ CLSTN1 IGFBP6 SLC22A17 NAP1L3 KLHDC3 ITFG1 ATP6V1B2 RPL32 NAA38 TCEAL2 HAPLN4 FKBP8 TMEM59L SCN2B YJEFN3 SLC25A4 PPP2CA NUDT21 APLP2 EIF4A2 HCN1 DNAJC6 NDUFC1 DNAJC5 MARCKS COX6C SNRPN SCN3B BEX1 CBLN4 NEGR1 SLC9A6 SPRN GABRA5 CISD1 TEX2 SYNGR1 ATP6V0E2 RPL3 AZIN1 REEP2 PCSK1 DIRAS2 VIPR2 NPTN SARAF DYNLRB1 RPL39 ZNF365 OXR1 CEND1 PFN1 CAPZA2 MMD PCBP1 SELT TMSB10 CAB39 YWHAH LDB2 ATP2A2 FTL TMEM65 DHCR24 IMMP1L FAIM2 AKAP12 CLSTN2 ATRN HTR2A KLC1 EIF4G2 AK5 FAM131B TOMM20 INA TKT RPS15 RHOB TPRG1L DYNLL2 NCOA4 NDRG4 DNAJB6 RPS6 SNCB RHEB CNTNAP5 PDE1A MED31 SCN1A PNMAL2 CAP2 NDFIP2 NECAB1 CD99L2 RHBDD2 ARL6IP1 FAM3C NPAS3 SERF2 TM2D3 USMG5 ELMO1 NPTX1 CBX6 CPE PEX5L RHOA SCG2 CAPNS1 DPP6 PFN2 PCDH17 UBQLN2 NDUFA5 KIFAP3 KIF1A GPX4 COX5B WSB2 SERPINE2 SUB1 PCMT1 CPLX2 PTPRS NMNAT2 MAGED2 HSP90AB1 CACNB1 POLR2K SPARCL1 ATP5I NSF RP11-664H7.2 LGALS1 C2ORF80 EFCC1 ANXA7 ATP6V1G2 C18ORF32 RPL17-C18ORF32 NGRN RP11-20I23.1 RP11-219A15.1 TUBB3 ATP6V0C TUBB PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MT-ATP6 MT-CO3 MT-CO2 MT-ND2 MTRNR2L12 MT-ND1 ACTB MT-ND4L WASL PRNP MT-CYB MT-ND3 SNAP25 CALM2 SYTL2 RTN4 TERF2IP VAMP2 SYT1 RAP1GDS1 PEBP1 SNCA SPTBN1 MTRNR2L1 PREPL OLFM1 HNRNPA1P40 NR1I3 COPRS DPP6 SKP1 HOMER1 ZMAT2 RORB CCDC178 RAP2A TMA7 PCDHA10 STXBP1 SERPINE2 PNMAL1 CTNND2 PSAP TPD52 PCDHGA6 SERPINI1 WSB2 ARF3 SERINC1 APLP1 ELMO1 CALM1 ATP5F1 PRKCB MTPN ATP6V1F NDRG4 RAB7A MORF4L1 PPP3CA ENO2 NEFL MTRNR2L8 SUB1 PCBP1 ENOPH1 PPP2CA PGRMC1 ERH SERINC3 PACSIN1 STMN1 S100A6 RFK CCK CX3CL1 SEZ6L RPS6 CPNE8 MAP4 ATP6V1B2 MTRNR2L6 CMAHP OPN3 RPS28 HSP90AA1 TSC22D1 PTMA CALCRL PTK2B ATP5A1 YWHAQ HSP90AB1 TSPAN7 ATP2B2 TOMM20 GTF3A NRAS CKB GRIN2A QDPR PTPRN2 PPP3R1 ATP1A1 THY1 ENC1 RAB2A YWHAH DKK3 ATP6V0D1 OCIAD1 PRKACB DCLK1 CABP1 NFIA RHOA FXYD6 CRYAB RPS15 PSMB3 B2M BIRC5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 CALM2 NPTXR MT-CO3 GRIN1 MAPK1 GPM6A OLFM1 RPL31 MT-CO1 ENC1 RPL36A RPL41 COX6C CADM2 RPL35 KLC1 PREPL MT-CO2 ATP6V0B NRGN TMA7 RP11-111M22.2 EPHB6 DCTN1 PKM CHN1 MAPRE3 RTN4 RPS6 SLIT1 MT-ND2 FAIM2 APLP1 RPS27A CALM1 ACTB HSP90AA1 SLC39A10 RPL37A GNG2 CLTC GRIN2A STXBP1 NRCAM WASF1 RPL12 AK5 ESCO2 ZNF385D PLEKHD1 RAB6B PRKCG MAP1A RPL18A CKB BASP1 BSN FAM19A1 ITFG1 SEZ6L2 HOMER1 SLC12A5 RPL11 GLRA3 CTU2 NDUFA4 TMEM59L NRSN2 MTRNR2L1 LPPR4 PSAP PIK3R1 NDUFS5 ITM2B FAM134A TSPAN7 SYT1 ATP6AP2 FTH1 UCHL1 MBP TUBB4A NDFIP1 GPX3 DPYSL2 NDUFS6 PPP3CB RGS12 PRKACB PNMA2 EIF1AX GDI1 RTN3 DMKN PACSIN1 MT3 SEPW1 NECAB1 ATP6V1B2 POMP C1ORF115 LIMK1 MT-ND5 GDA APLP2 SLC30A3 RNF181 MMD PFN2 NDUFB1 VSNL1 PPIA RPL38 ALCAM BAI2 TUBA1B KCNK1 KIFAP3 CAMKK2 MYOM2 MT-CYB YWHAG KIF21A RPL39 ENO2 MAP1B GPR26 SNCA PRKAR1B BIRC5 RP11-219A15.1 IDS NPTX1 SYT11 SLC38A1 HOPX ARL6IP5 RPS10 SEMA3C PHYHIPL BRK1 GABARAP C16ORF93 EID1 FBXL16 PPM1A COX6A1 PGAM1 NAT8L MT-ND4 FXYD6 PPP2CB WSB2 PODXL S100A6 DYNLL1 OPA1 HDDC2 FAM127A GNAQ CRKL CYP1B1 GDE1 BAD MPP1 MSMO1 RPS15 SYNGR3 GSG1L ATP6V1A CMAS SKP1 PSENEN GPR158 SAP18 SYNJ1 TUBA1A PPP3R1 NOS2 STMN1 MRFAP1 ONECUT2 MT-ND3 LRFN3 SERPINE2 ATP2A2 PHYHIP SCN3B RPL32 SPOCK2 CTC-575D19.1 CADM3 SULT4A1 SYN2 SLC24A2 RTN1 MORF4L1 ARPP19 FAM174A OAZ1 RNF11 RP11-20I23.1 APP FAM163B OXR1 USMG5 SPON2 SH2D6 TCEAL2 GAPDH MLLT11 UBB MTRNR2L6 CABP1 ATP5J2 WDR47 TESPA1 KIF3C RHBDD2 PGM2L1 PCDH8 MAOB RPS28 PSMC5 ATP6AP1 BEX1 SNX17 SLC17A7 HSPA4 RELN COX7B UQCRB MTRNR2L12 UQCRH HPRT1 PINK1 AP2M1 TOMM7 SLCO2A1 MAP7D1 CLSTN1 RGS4 PSD3 C7ORF50 RPS2 FAM96B YWHAZ PTK2B CA10 GABARAPL2 ARPC4 ARHGAP35 GRINA SLC9A1 ATP1A2 CAB39 GABRA1 LDB2 COPS7A CAPZA2 RPS3A CRIP2 NIPA1 PTMA HSPA8 PTPRS ABHD8 OLA1 CPNE4 MPC2 PAFAH1B2 TMSB10 TPD52 EPHA6 CREG2 RAB2A NAA38 DNAJB6 KIF5A SPCS2 TMOD2 NDUFA12 PCMT1 MAP4 STMN2 RPL6 UROS ATP6V0E2 TOMM70A STMN4 RPS12 CNRIP1 THSD7A MRPS21 NBL1 TMSB4X RABAC1 MAP2K1 SARAF KCNAB2 OXCT1 H2AFZ PCBP1 FTL MBOAT7 MT-ND1 RP11-97O12.3 CYCS MT-ND4L SH3GL2 THBS4 CHP1 RASGEF1B ATP6V0D1 ATP5E TUBB2A SERINC1 C19ORF10 PI4KA BCAP31 CDK5R2 EPB41L3 SRP9 RAPGEF5 ATP5B KCNA2 CALM3 TERF2IP NELL2 SSTR1 MARCKS MAGED1 ACTG1 WASL ASAP1 ARF5 JAKMIP1 ENPP2 MT-ATP6 NGFRAP1 DPP6 ZMAT2 JUND CX3CL1 DKK3 EIF4G2 TMEM155 CCK PEBP1 INA TCEB1 PPP2CA EDIL3 NCALD RPL13A MRPL55 MTCH1 CPE PEG10 PPP2R1A PTGES3 UQCRFS1 COA4 GNB1 FAT3 SNX3 MAL2 ATP5O ATP6V0C RAN FBXL15 PRELID1 AES D4S234E ATP2B2 BANF1 MTRNR2L8 MRPL11 CLU TOLLIP RAB1A COX5A PRKAR1A PRDX2 HMGCS1 LMO3 RP11-195F19.5 BAALC MLF2 LAGE3 ZBTB18 NDUFA1 TENM3 ATP1B1 TOMM20 CBLN4 SMIM13 PEA15 ARF1 RPH3A JUNB HN1 PPDPF SLC9A6 HMGCR TSPYL1 TMEM151A UHMK1 STX1A CHCHD2 SCN2B ALDOA NSF SNRPN NUDT4 RNASEK-C17ORF49 SERF2 RPL26 RPL21 PCDHGA5 PCDHGA10 PCDHGA6 ARFGAP2 SYTL2 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GPM6A SNAP25 PRKACB MT-CO1 RTN4 CHN1 PRKCB TSPAN7 ARPP19 NRGN RTN1 MAP1B PIK3R1 CALM1 ENC1 PPP3CA SYT1 ACTG1 MAPK1 TUBA1B NFE2L1 TF YWHAG STXBP1 RPL38 PPP3CB CREG2 CYFIP2 NREP REEP5 SULT4A1 OPCML RTN3 SYT13 RAB2A BEX1 EFR3A PSAP MORF4L1 ETV5 CNTN1 FAIM2 BSN DIRAS2 ATP1B1 PPP2CB SCG2 PKM DPYSL2 CKB ONECUT2 MT-ND4 NPTX1 RGS4 PRNP FTH1 MAST3 PRKCE LINGO1 BAG4 NEFL DKK3 TBC1D15 FABP3 SLC39A10 TMEM117 LAMP5 MT-CO2 SYNJ1 SQLE MTRNR2L1 FSCN1 UQCR10 RAP2A FAM84A ATP5A1 TMEM35 CLEC2L MFN2 MT-ND3 MT-CYB MT-CO3 VAPB GRIN2A INPP5F CAMK2G NDUFA5 BCAP31 GDI1 GNAQ PCDH19 GLDN MTCH1 NAP1L3 MAP4 SH3GL2 MT-ATP6 SPOCK1 KCNV1 SLC22A17 QKI ATP2B4 SPRN SNX3 MRFAP1 C1ORF56 VPS35 MAPK8IP2 TOMM20 VSNL1 RPS28 PTMA CALM2 ATP6V0D1 CAMKK2 STX1A GTF3A SLC35B1 CAP2 HS6ST3 BEX2 DHCR24 MT-ND2 RCAN2 TMEM14A CD63 CPNE8 KIF3C PCDH8 NAP1L2 WASF1 REEP2 MTX3 PSD3 SLC9A6 BAI2 PHYHIP CD99L2 EIF4A2 DNAJB6 KCNIP1 GPR26 MORF4L2 C6ORF1 NPAS3 SYN1 RAB6C-AS1 AES LMBRD2 TMSB4X PPA1 CAPNS1 NGEF KIF21A GPX4 ANO3 GPR88 APEH FOSB LGI3 MDH1 PPARGC1A SERF2 MT-ND1 STMN1 C1ORF115 PTPRN THY1 PREPL FXYD7 RHEB OR6D1P ASTL RAB37 CAMK4 VAMP2 PGAM1 NEUROD6 MTRNR2L12 GRIN1 PPP2R4 NDUFB4 GUK1 COPRS CCK KCNC2 WBSCR17 KIFAP3 APP RP11-111M22.2 MCHR2 YBEY NDUFA13 APLP1 CABP1 USMG5 BSG LZTS1 RAB6A NRN1 ARL6IP1 RP11-1396O13.2 ATP5E LMO4 SPARCL1 RPH3A FBXL15 GABRA1 ATP2B2 PGM2L1 ATP6V1B2 BIRC5 RAPGEF5 IL3RA TMEM130 AK5 NCAM2 SV2B ATP1A1 TSPYL1 CHL1 MTRNR2L6 RPL41 IDS RPL17-C18ORF32 RPL17 ATP6V1G2 HNRNPA1P40 CFH RPL7 GTF2H2C_2 AC244489.1 PTCHD4 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CALM1 SNAP25 NRGN MT-CO3 MT-CO2 SYT1 NPTN MT-ND2 ATP2B2 CHN1 MT-ND4 ENC1 RTN3 RTN4 CALM3 ARPP19 MT-ATP6 CALM2 PPP2CB STXBP1 TOMM20 TSPYL1 TUBA1B CCK ATP1B1 HSP90AB1 PPP3CA MTRNR2L12 SERINC3 MT-ND3 MT-CYB MT-ND1 PRNP MAP1B ARL6IP1 TSPAN7 LPPR4 MRPL12 FAT3 RP11-111M22.2 ACTB LMO4 KIF3C GPM6A PI4KA CDK5R1 VAMP2 OLFM1 APP SLC9A6 PREPL NECAB1 RPL41 ATP1A1 PDP1 WBP2 TSC22D1 RGS12 CEND1 PKM CADM3 PPP2R4 SERPINE2 CNTN1 PPP1CB ATP2A2 CKB SCN3B CLSTN1 ITPR2 NPTX1 ATP2B4 YWHAZ PPP2R2C AZIN1 SLC25A6 FAIM2 ATP5F1 MAP1A RGS4 PRKAR1B RAPGEF5 TERF2IP BCAP31 SLC12A5 WASF1 PJA2 LMBRD2 HCN1 SYNPO HS6ST3 SARAF FAM19A1 CRIP2 KIFAP3 PIK3R1 VSNL1 LAP3 STMN1 PPP3CB NNAT SULT4A1 PRKCB TMEM160 GOT1 NDFIP1 NARS PNMAL1 CYFIP2 BSG MAPK1 HSP90AA1 NDUFV1 TMX4 PEBP1 C1ORF115 SLC38A11 IDS MTRNR2L8 LAMTOR5 CERS6 TESPA1 DYNC1I1 BAI2 CREG2 GHITM MAP2K4 CTU2 ATP6V0E2 CXXC4 OXR1 ANO3 MTND2P28 CDC37 SEPW1 TOLLIP SNX10 TRMT112 NUAK1 NFE2L1 SLC39A10 CAMKK2 RTN1 DPYSL2 FAM131B ATP6V1C1 LMO3 PPP2R1A TMEM59L LDB2 DUSP1 ATP6AP2 MLLT11 DCLK1 TPGS2 HOMER1 VGF PGK1 PRKAR1A SYT17 MAST3 FKBP1A MTPN RRS1 LRRIQ1 VSTM2L APLP1 DNM3 TSPYL4 NEUROD1 CHST8 COL5A3 ACTG1 GRINA BEX2 RAP2A CPLX1 UQCRFS1 YWHAH UBC PTK2B EGR1 SMIM13 TENM3 EPB41L3 CHL1 PITHD1 BSN C1QBP IDH3A ZFAND5 RPS28 ATP6V1F TCEAL5 CX3CL1 D4S234E FAM84A HMP19 DMTN SLC6A17 PSAP PNKD UCHL1 KLC1 AP2S1 FSCN1 KIF21A KCNK1 MYO1B KIF1A UBA1 CFL1 C1S ITM2C APOE SKP1 ARL6IP5 SCOC MTUS1 GRIN1 ELAVL4 WARS DDN POU3F1 ETFB JUND GABRG1 TAGLN3 GDI1 FXYD6 MAP7D1 MTRNR2L1 RAB3A MED31 SUMO2 SYT11 CTNND2 SDCBP NDUFC2 SSBP3 CABP1 COX5B FAM163B LZTS1 SLC8A2 CDKN2D CADM2 NEGR1 BNIP3 YJEFN3 RHBDD2 NRCAM YWHAB EIF4A2 CACNG3 VDAC1 LCP2 ZNF385A BEX5 ATP5J2 RAB7A NPTXR CA10 RPH3A CNR1 NAPB ACOT7 PNMA2 LANCL1 PCMT1 NDUFS6 CLSTN2 GUCY1B3 CCDC85B CHRDL1 SCD5 UHMK1 HMGCR HPCA RAB31 SERPINI1 MAGED1 PCSK1N TMEM130 AP2M1 APLP2 SLC7A1 ZNF365 MORF4L2 AP1S1 SLC30A3 RPL7 NAT8L MGST3 TPT1 GTF3A MPC2 ARF3 SCG2 TRIM37 SPARCL1 ENO2 NCEH1 ITFG1 SV2B ATP5E RAN POLR2M PIN1 RHEB THY1 NRN1 GYG1 PSD3 CSDE1 CA11 FXYD7 EIF1AX TMEM35 NDUFB5 RAB11A SPTBN1 PIP5K1B GNG2 TPI1 DGUOK DNAJA1 SUMO3 BHLHE40 VAMP1 SPRYD3 NDRG4 NAPA PRDX3 FILIP1L PIP4K2A NEFL PHPT1 PNMA1 TGOLN2 ROBO2 GNAQ HTR2A CPNE8 FAM3C TMEM132D ATP6AP1 HK1 STX1B HPRT1 SLC17A7 USP5 AURKAIP1 ARL8B GNG3 H2AFZ GSK3A SERINC1 GPR26 RPL17 MORF4L1 GABARAP RNASEK-C17ORF49 RPL17-C18ORF32 ARF5 ATP6V1G2 RP11-219A15.1 CFH TUBB AC244489.1 PCDHA9 PCDHAC1 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO2 CALM1 TMSB4X SNAP25 MT-ND2 NRGN SPARCL1 RTN1 IDS BASP1 CALM2 STMN1 ATP1B1 TBC1D15 ZNF385D RAB3B SYTL2 MT-ND4 YWHAH RTN3 ACTG1 NGFRAP1 PSD3 ENC1 ATP5E TMSB10 MT-CO3 CHN1 SERF2 ATP5J2 RORB STMN2 PSAP VAMP2 CDK5R1 GRIN1 RTN4 ZBTB18 ATP6V1A SERPINI1 CABP1 PLCB1 RP11-111M22.2 SULT4A1 PKM NRCAM OXR1 HSP90AB1 PRKACB UQCRB EIF4A2 PPP3CA PREPL FTH1 DPP6 KIF21A CADM2 YWHAZ MYL6 PGM2L1 ENO2 CCK PPP2CB MT-CO1 TMA7 RPL35 GAP43 ATP1A1 PTPN20A APP SPOCK1 NDUFS5 SLC24A2 SUB1 EID1 SH3BGRL2 RPL37A GUK1 WASF1 DSTN PRNP GHITM SV2B PCMT1 RAP2A SCN1A GDI1 SYN1 MGST3 GPM6A CKB DCLK1 ACTB ATP2B2 GAPDH RPL17-C18ORF32 SMS TRHDE CREG2 CDK5R2 GTF2H2C_2 NR1I3 UCHL1 MAP1A MT-ND1 TPI1 EPHA6 SCD5 NELL2 MIEN1 GORASP2 CHL1 GABARAPL1 SERINC1 MPI FXYD7 CPE HSPB8 BEX1 KLC1 COX6A1 NAPB NHP2L1 MTCH1 NTNG1 RPS15 COX6C RAN ARPP19 FASN DNAJA1 EIF1 MBP PTPRZ1 SNRPN SLC17A7 THY1 RAB3C MT-ND3 PRKCB NFE2L1 PITHD1 VSNL1 PRKAR1A RPL13A UBB NCDN DNAJC5 PFDN4 SLC38A1 PEBP1 NREP MAL2 CAP2 YWHAB RAD23B MAP1B UBA52 GRIN2A PRUNE2 SMIM13 COX7C PPP2CA RAB3A KCNA2 DYNLL2 FKBP1A SNX10 RPL13 YWHAG COL5A2 TUBA1B PIK3R1 MT-CYB ARF3 SNAP91 RP11-195F19.5 NMNAT2 RNF181 RNF11 CYCS RPS4X GABRA1 UQCRH NEFM NRN1 PGK1 NUAK1 RAB1A RPS6 TPT1 PJA2 TSC22D1 HSP90AA1 NDFIP1 REEP5 NDUFB4 BCAT1 RANBP1 UQCRC2 SEPW1 LMO4 PSMA7 CERS6 DNAJC6 CLU TUBA1A DYNLRB1 TSPAN7 SSBP3 NDUFA13 MT-ATP6 TMX4 MORF4L1 IDI1 UQCR11 TMOD2 RPL36A TUBD1 OAZ1 PSMD8 ZCCHC17 COX8A MYEOV2 ATRN VDAC1 GOLIM4 RFK MRVI1 OTOA NECAB1 APLP2 HK1 SEPT4 MRFAP1 GTF3A LRRC59 GABRA6 LYNX1 RPL15 S100A6 CYB5R3 ABHD14A DLD OPCML RPL39 BEX5 NDUFB10 HCN1 AP2S1 PTPRN STMN3 RPS27A ATP5I DHCR24 FAT3 BSG WARS ENSA CNTN1 NTN4 RPS3A ZBTB20 FAIM2 MTRNR2L12 SPCS2 INA NKIRAS1 C19ORF53 TMEM14A NDUFA12 PBXIP1 NGEF MPP1 LMBRD2 COX4I1 PNMA1 GRINA RPL7 PFN2 BTNL9 NAA38 AZIN1 PHLDB2 FAM19A1 CLSTN1 MAPK1 PAK1 NARS MAP4 RCAN2 SPRTN RP11-90P5.1 GPX1 ALG10 ACOT7 CDK14 NDN CMAS DCC DIRAS2 RBX1 SUCLA2 PGAM1 NDUFA1 SLC7A8 TLE4 RASGRP1 RHEB CCDC68 TOX2 INPP5F NUDT21 DCTN1 USMG5 PPP2R2B SYT4 TCEAL5 MTATP6P1 NHP2 CYP1B1 GSTO1 BAALC NBL1 HOMER1 MLF2 ACOT4 ABCA8 DIRAS1 ADAM23 CLIP3 OR6D1P VSTM2L KCNC2 KCNAB2 C1S RPL32 MDH1 HSPE1 FTL SELM MAP7D2 SUMO2 GNG2 BTBD10 PFKP SAP18 BEX2 MORF4L2 RPL21 SPTBN1 DNAJB9 ATP9A ZBBX DYNLL1 IQSEC1 RP11-20I23.1 C19ORF10 STXBP1 BEX4 PPP3CB CALM3 LGI3 WASL MMP24-AS1 NDUFB8 CEND1 PSMD2 ISCU CDC37 UBA1 PRDX5 DPYSL2 C14ORF2 PCSK1N PEA15 ADCYAP1 OLFM1 RPL12 CRIP2 SNN MRPS21 UBE2F CD99L2 TSPYL4 SEMA5A GRAMD3 GOT1 PRDM8 HMP19 RPL23A SYT13 RASGRF2 MED10 KIF3C SNCA TBCB BRK1 PPP1R9B MAGEH1 PGD RRM2B FKBP4 PPP2R1A TBCA WSB2 TOMM20 RPL38 SYNPR SYT5 ITM2C NIPA1 UBE2N DYNLT3 RASGRF1 UHMK1 RAB6A RPL31 C1ORF52 CDH8 FAM84A NGRN MLLT11 HMGCR FUNDC1 CRYM RAB2A PNMA2 TPPP MIF TWIST1 MRPL15 ITM2B PHYHIP LCNL1 PLS3 FXYD6 COX5B TSPYL1 SUMO3 HTR2A RPL6 GMFB SYNJ1 SYN2 ARL6IP1 KCNC3 TMEM35 KIF5A IPCEF1 SLC25A22 D4S234E CLTC TOLLIP FBXO2 COPG1 CLTA PRDX1 WBP2 SUSD4 MTPN PGRMC1 ADAMTS9 ATPAF1 SPHKAP PPP1R7 CA11 FAM134A GNAQ PDE1C NEFL FAM127A TM2D3 NDUFA5 GPR56 GNG3 GLRA3 CRIM1 CLDND1 KIAA1045 GRPEL1 CDC42SE2 LAMA4 NCEH1 SLC38A11 KLHDC3 TMEM151A TCEAL2 COPS7A PEX5L C1ORF56 RAB40B PPP2R2C TMEM130 HSPA8 NAT8L APLP1 ARL8A REEP2 CADM3 NAP1L3 DMKN JUND ATP5G1 ATP6V0C COX7A2 ZFAND5 UBE2V2 PRKCE RIIAD1 RPL41 NPTXR SCAND1 DLC1 CIAPIN1 COPS8 PET100 KCNK1 DNAJB6 STX1A CCDC85B CRYAB LPPR4 RAB6B EIF1AX NAP1L2 GPCPD1 TPGS2 TLN2 UQCRQ ATP6V1F ASNA1 COL11A1 BANF1 NDUFC1 NDUFB7 KLC2 SH3GL2 RAB11A STRAP VAPB AC244489.1 GABARAP FAM3C ALDOA ARF5 HIGD1A APOLD1 NSF NUDT4 CNTNAP3 PSMB3 RNASEK-C17ORF49 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RTN4 MT-CO2 MT-CO1 CALM2 RTN3 ARPP19 SYT1 GPM6A RP11-111M22.2 CHN1 ZNF385D CCK PRKCB TMSB10 VSNL1 TBC1D15 MAP1B RPL31 CALM1 NRGN ENC1 MT-CO3 RPS15 DYNLL1 RTN1 C14ORF2 SLC39A10 CLU RAB3B YJEFN3 CREG2 PKM SCN1A HSP90AA1 PSAP RPL36A MT-ND4 TOMM7 RPL37A MT-ND1 RPL32 HOPX CKB TSPYL1 ARF3 TUBA1B PEBP1 TUBB4A RPL13A PPP3CA YWHAH LMO3 MT-ND2 EIF4A2 GRIN1 TSC22D1 TUBA1A KLC1 DYNC1I1 CALM3 PCDHGA5 ATP1A1 ARL6IP1 STMN1 OLFM1 DKK3 FAM84A PRNP NDUFA13 RPS4X SLC12A5 SYT11 CABP1 CADM2 YWHAZ PHYHIP DPP6 TUBB2A RPS27A NECAB1 ACTG1 AK5 PREPL RPL41 ACTB SEPW1 PRKACB NAPB TSPAN7 MT-ND3 ATP1B1 SLC30A3 ATP1A3 PPIA CFH RP11-219A15.1 HNRNPA1P40 SPARCL1 MAL2 MTCH1 ATP5G3 RPH3A CAP2 SLC17A7 ANO3 NDUFC1 HTR2A PRKAR1B RNASEK-C17ORF49 ATP5E CAMKK2 GABRA1 TMSB4X TXN KCNV1 NRCAM ATP5J2 SNCA ENO2 BSG PGM2L1 RPS12 FTH1 GUK1 SOD1 TMX4 NAT8L RPL15 YWHAB TBCA MAP2K4 MTRNR2L1 SUCLA2 PGRMC1 UQCRH PTMA SNCB PSD3 OPCML NDFIP1 PIK3R1 RPS6 SNX10 ATXN10 PFN2 PGAM1 APLP1 OXR1 VDAC3 STXBP1 TGOLN2 NGFRAP1 RPS10 UQCRB TMEM59L SCN3B CDK5 SLC1A2 SERINC1 CLSTN1 OAT DCLK1 PPP1CB ARF1 OST4 TPD52 UBC RP11-20I23.1 ATP6V0C IDS RPL6 RPL38 CHMP4B LDOC1L TMEM65 ACTR10 PPP2R4 GRIN2A ATP2A2 ARL6IP5 RAB40B RPL12 GAPDH PIN1 RSL24D1 COX4I1 SLC22A17 HSPA8 TMEM130 NPTXR SERPINI1 RAB2A DNM3 CERS6 NDFIP2 ATP5G1 SNX3 ATP5J C4ORF3 RPL11 RPL17-C18ORF32 NELL2 NUDT4 SERINC3 CPNE4 PPP2R2B ATP5I SNAP91 DCTN1 CLTC FKBP1A OCIAD1 SLC6A17 CADM3 RPS28 PARM1 MT-ND4L ELAVL4 FASN BEX5 LMO4 BEX2 SEZ6L NUDT21 NHP2L1 ATP9A OPN3 GDA GADD45GIP1 EPHB6 DNAJB6 VSTM2A TOMM20 BSN RGS4 MAPK8IP2 EID1 HS6ST3 PPP2R1A TAGLN3 CHMP5 KLHDC3 SH3GL2 TLN2 SLC8A2 COX5A COPE IPCEF1 HCN1 RPL39 DNAJC4 ONECUT2 PJA2 UBE2V2 MAGED1 NCDN SUMO2 NPTN MAPK1 RPL21 ATP2B2 ATP5B FAIM2 NDUFB1 SIRPA GAP43 PRKAR1A HSP90AB1 NGEF SPOCK1 MYL6 VDAC1 NDUFB4 MAP1LC3B RAB4A GDI1 NRN1 LYNX1 PLD3 SKP1 NEGR1 UHMK1 ZNF365 CACNG3 PLCB2 UCHL1 GMFB IQCK STUB1 NARS MT3 INHBA PLCB1 RNF208 UQCRC2 NDUFA4 CAMK4 RLIM VPS35 CAB39 CSDE1 BNIP3 CCDC154 HIGD1A CCT5 ESCO2 TUBD1 NR1I3 PGK1 FAM229A RASGRP1 CTNNB1 SH3BGRL3 TSPYL4 BASP1 KCNAB2 CLTA CMPK1 YAF2 ATP6AP1 SLC38A11 ETS2 ABHD14A RAB11A DDN POLR2L C19ORF53 SCN4B HOMER1 PNMA1 TBCB AP3S1 HMGCR NAP1L3 TESPA1 KIF5A ATP6V1G2 PFDN1 COX7B UBE2N TOLLIP RPL23A PPP3CB SNN H2AFZ ITFG1 TMEM35 PDE1C NMNAT2 RAP2A ACTR6 CDC37 DLD GSK3A COX5B ELAVL2 RFK PNMAL2 UBA1 TM2D3 PCDHA9 PRDX1 ATP6V1F NDUFV1 SYNJ1 DIRAS2 SYT4 IGFBP5 RELL1 NEFM LAGE3 PDLIM5 UBQLN2 GPR171 CPLX2 TMOD2 RHBDD2 PACSIN1 HMP19 PTPRN BANF1 EPB41L3 SYN2 MGST3 CRKL ITM2C EDF1 SLITRK1 C1QL2 ATP6AP2 MT1M JUND PNMAL1 UROS POLR2I CBX6 RPL18A CPE SRP14 TPPP SCOC UBE2D2 CMAHP GPR6 ZMAT2 ATP5G2 PSMD8 TCEB2 SLC35B1 SLC38A1 MRAS LDHB COX6C NFIA MTX3 DGUOK CYFIP2 RPL7 SMAP2 LDOC1 ALCAM C14ORF132 NRSN2 COX7C PIP5K1B CA11 RNF11 NUTF2 BEX1 GORASP2 NAP1L2 REPS2 GNAQ MLLT11 PET100 CAMK2G PDZRN4 TMEM141 PRDM8 RHEB ATP6V0E2 SPCS2 PSMC5 NDRG2 RAB3A ZNF804A TTN SLC9A6 TMEM258 MAGEL2 RAD23B LRRIQ1 AP2B1 NCAM2 SULT4A1 MPC2 RAB6A NTNG1 RPL35 SLC25A4 NAPA PPDPF PCDH19 HEY1 LCNL1 NDUFB10 VAPB NEUROD1 ARPC4 PDZK1 TMEM230 SYNPO KIFAP3 COX8A APLP2 PCBP1 EGR3 THY1 SYT5 CADPS2 SCD STMN3 NDUFA1 RAB6B FBXL16 C19ORF10 SRP9 TMEM150C BAI2 WASF1 NUAK1 EFR3A EIF4G2 C19ORF43 KLC2 WFS1 NPTX2 DPYSL2 GNG3 UBE2E3 IMMP1L RTN4R SNRPE LZTS1 PPP2CB WBP2 ZCCHC17 CLIP3 NDUFB8 C9ORF16 PDZD11 STMN2 AES PPP2R2C ITM2B TMA7 NREP FAM174A FAT3 C19ORF70 PNMA2 MDH1 PVRL1 MAPRE2 TCEAL2 SERPINE2 RPL10A WBSCR17 EPDR1 MTPN CTNND2 NDUFS5 APP COL24A1 ALDOC PTPRT RPS26 FKBP8 PPA1 RAB1A MORF4L1 SLC25A5 GABARAPL1 D4S234E ARL8B MT-ND5 FIGN FABP7 VSTM2L NELL1 C11ORF31 FAM149B1 MYEOV2 ZFAND5 AZIN1 HN1 PI4KA CDK17 MRPL55 SPARC ATP6V1A PFDN4 P2RY14 SDCBP ANAPC13 RPL26 KITLG SH3RF1 ENSA FGF12 CHL1 FTL ERH PDE1A EPHB1 GPR98 SUMO1 PAK1 MCHR2 DBNDD1 DMTN ARHGDIG ADSS HTR1F NPAS3 CAPZB ARL2BP CCDC85B CRYM SH3BGRL2 ADAM23 CHRDL1 RIT2 PRKCG SEZ6L2 RAN TUBB4B SERP2 DNAJC5 ITPR2 PPP3R1 OLA1 PCMT1 MRPS28 MAP4 RPL8 COPS7A DNAJC6 SELM SLC9A1 RP11-195F19.5 LRP1B ATP6V1C1 MYO1B C1QBP PLS3 ACOT7 COX6A1 LMBR1 BAG4 PRDX2 GLIS3 KCNK1 ATP1A2 SEC61G SV2B TERF2IP RPL13 STMN4 RORB ZBTB18 UQCRQ CHP1 HSPE1 USMG5 MFN2 MRPL20 VAMP2 ARF5 SERF2 FAM3C NGRN ALDOA BSCL2 MTRNR2L6 KRT17P6 MIF MBOAT7 AC244489.1 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL26 CLU TMSB10 RPL37A SNAP25 RPL41 RPL13 NPTX1 RPL11 RTN3 RPL39 ACTB GAPDH CHN1 RPL32 RPL17-C18ORF32 GRIN2A MRVI1 RPL38 ANGPTL4 COX4I1 PCP4 APP RPL31 RPL13A RPS26 RPL36A DNAJC21 CREG2 HSP90AB1 GRIN1 OCIAD1 UQCRB OLFM1 RPS27A RPL3 RAB13 RNF212 RAB1A TMA7 PGM2L1 ATP2A2 PKM FAM189A2 NSF PRKACB PPIA NRGN C1ORF194 CCL2 ALCAM SERPINI1 MT-CO1 RPL23A TOMM7 GLUL ATP6V1B2 F3 PTGDS ARPP19 OXR1 VDAC1 PSAP STMN4 MT-CO2 DYNLL2 CYCS RPS15 YWHAG NOTCH1 BANF1 CADM2 FXYD7 CALM2 C9ORF16 SLC22A17 COX7A2L RPS28 TSPYL1 HDLBP TMSB4X ATP5I RP11-219A15.1 HNRNPA1P40 BIRC5 OR6D1P OST4 WASL BST2 SERF2 OPCML ATP5O HDDC2 PPAP2B CLDND2 WLS ATP5E SLC9A9 SLC6A1 SUSD4 ATP6V0B PTPRN PRKCB SEPW1 C11ORF31 NPTN DMTN C19ORF43 RPL15 MAP1B THSD7A RAB3A NNAT SYT1 PNMA2 FAM3C MT-CYB C16ORF13 HILPDA CSDE1 BCAS2 YWHAH GNG3 KIFAP3 SRP14 ETV5 BASP1 CKB MT-CO3 UBE2N WBP11 BAD KIAA1755 CPE STX1B TPI1 TCEB2 CFH DCTN1 CALM3 MFSD2A EIF4A2 HNRNPH2 REEP5 GUK1 COX6B1 FXYD6 SYPL1 C2ORF80 SLC38A1 MAPK1 TOMM20 GPR56 FGF2 PJA2 CTNNA2 RHOB AES BSG C1QBP COX6A1 SELM MTCH1 BAI2 ADAM23 HEPACAM C12ORF49 GABRA5 NDUFB1 BOC MTRNR2L12 MFGE8 MRPL33 HN1 C14ORF2 TSPAN7 RAB6A DPYSL2 MRPS21 RPS4X PREPL EIF1B SCOC SOD1 COX6C APLP1 LIMK1 SLC9A6 DYNLRB1 PPP3CA STK24 SYN2 BCKDK SPCS2 TPRG1L GJA1 SERPINA3 PEF1 ATP6AP2 SLC1A2 COL5A3 MT-ND4 AEBP1 CLIP3 DLD MT3 TMEM141 CHL1 POLR2I PI4KA SLC1A3 SNRPN TSPYL5 ENO2 PEPD SCG2 VDAC3 YWHAB TCEB1 LMO3 LDHB PSMA7 APOLD1 TBCA GADD45B APBB1 SYT11 SALL2 NAPA SV2B GDI1 LMBR1 ALDH1L1 STMN1 PCMT1 ITFG1 NELL2 PITHD1 NRF1 NAA38 TAF7L USMG5 HCN1 TRAPPC1 PPP3CB AP1S1 SPOCK2 ALKBH7 CASP7 FAIM2 IGFN1 EPS15 KIF3C OAZ1 RTN4 PRNP MT2A UBE2M RPL35 PBXIP1 DIRAS2 PPP3R1 TUBD1 VSTM2A NDUFS5 ARL6IP5 UBE2V2 MLLT11 TMEM258 TSC22D1 RTN1 PLCB1 SNCA AZIN1 HSPB1 UQCRQ RAB11A PTMA SYN1 ACP1 EID1 MTX3 RPS6 CCDC124 PPA1 OLFM2 HMGCS1 ATP1A1 TMEM130 ANXA6 COX7C HOMER1 HTRA1 GSKIP TMEM59L FBXL15 SLC25A6 SPARCL1 NAP1L3 PPDPF TESPA1 SCD RPS5 TUBB2B BHLHE40 COX5B DDN BCL6 NAPB NEFL ATP2B2 DIO2 PEBP1 RAB3C AK5 ZNF385D SYTL2 RAB3B ALDOA C20ORF24 RNASEK-C17ORF49 RPL21 AC244489.1 GPR98 ATP6V1G2 RPS10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RTN4 OR6D1P SNAP25 ACTB FAT3 CHN1 GPM6A BIRC5 PGM2L1 ENC1 HOMER1 RP11-111M22.2 ZNF385D IMMP1L CBX6 CKB ARL6IP1 HMGCR ZBTB20 CALM1 TUBB2A ATP1B1 MT-ND1 STMN1 CREG2 SNRPN PEA15 PLD3 PRNP C11ORF31 PKM B3GNT1 PLCB1 NR1I3 HNRNPA1P40 ESCO2 TUBD1 ATP6V1E1 VDAC1 GABARAPL2 RPL23A LL0XNC01-16G2.1 MRPL11 CALM2 EIF4G2 PDGFD RPL31 UBE2N COX5A TSC22D1 RHBDD2 RPL11 UROD LMO4 APP GPR26 AQP4 UBE2QL1 RPH3A ATP6AP2 ATP5J PTMA KCNC3 TCEB2 TMSB4X SRP54-AS1 CDC37 ATP6V1A KIF25 ELAVL4 ATP2A2 MAPRE3 SST ATP1A1 YJEFN3 YWHAZ RPL10A GNB1 CLSTN1 CFH MBP PRKCE OLFM1 DPYSL2 GABRA1 RPL17 PNKP RAB11A DPY30 MAP2K2 RPL39 PRKAR1B UROS SERPINI1 PRKAR1A PNKD HDLBP NDFIP2 SYT11 ZNF385A RPL8 TBR1 PJA2 CCDC25 HOPX BAALC CALM3 NARS RANBP1 MMP24-AS1 OCIAD1 TSPYL4 KIF21A MPPED1 CSDE1 ENO2 ANO3 YWHAQ OPRK1 PSMA7 OXR1 FKBP4 C14ORF2 MAPRE2 CYCS ZFAND5 TOMM20 SEPW1 UQCRC2 YWHAB NDUFC2 SYT13 RP11-195F19.5 PNMAL1 PPM1A MAGED1 FBXL16 SCN1A CCT5 MORF4L2 MT-ND3 ADCYAP1 PHYHIP SPP1 THY1 CABP1 PDE1A TMSB10 CNTNAP5 CAMKK2 PDP1 TOLLIP C1ORF194 SLITRK1 UQCR11 BEX1 PPP3R1 DMKN DKK3 DCLK1 RTN1 PPP2CA LIG1 MAP7D1 DIRAS2 CISD1 MRFAP1 MTX3 KIF1A STXBP1 GAPDH ADAM23 RTN3 CCK RAB3C SNX10 RPL18A MT-ND4 PAM NGFRAP1 TGOLN2 ZBTB18 CADM3 REEP5 MAP1LC3B ECM1 KCNA1 AP1S2 PBX3 GUCY1B3 PSAP FTH1 RPL6 SSTR2 B2M IDS NSF RPS15 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 CALM2 ENC1 NRGN UCHL1 ZNF385D ATP2A2 VSNL1 SYT1 RP11-111M22.2 NECAB1 STXBP1 RTN1 PTMA CREG2 RTN4 CHN1 DNAJC21 ATP1B1 IDS MT-CO2 ACTB SARAF PRKAR1A SCN1A KLC1 ATP5O PRKCB VAMP2 CALM1 CFH CHGB TMSB4X SPOCK1 PIK3R1 FXYD6 GSK3A HOMER1 CAMK2D RGS12 SERPINE2 DNM3 NAPB GPM6A SYT11 MAP1B CCK FTH1 NGFRAP1 PJA2 PGAM1 SERINC3 NRCAM TMSB10 ATP9A HS6ST3 SUMO2 TSC22D1 TGOLN2 GDI1 NPTXR OLFM1 RHOA PNMA2 ESCO2 TBC1D15 ARFGAP2 NR1I3 SPARCL1 KIF21A GSG1L PPP3R1 KRAS PDE1A PEA15 SLC24A2 ENO2 HSP90AB1 CALM3 GRINA CDH8 LGI3 ATP2B2 SLC17A7 MT-CO1 PRKAR1B GTF2H2C_2 PDP1 PPIA YWHAG RAB3A CIAPIN1 LRRIQ1 RAPGEF5 NDUFA11 SLC39A10 RPL23A AP2M1 PREPL CAP2 JUND SERPINI1 RAB3C YWHAZ PCSK1 ZFAND5 PSD3 SCN3B CADM3 SEPW1 EPHA6 ZBTB18 CADM2 ATP6V1A DYNLL1 UBC MLF2 RPL13 GMFB DPP6 ITM2C SUMO1 SYNGR1 PEBP1 RPL26 SLC38A1 RPL41 GAP43 TOLLIP INPP5F TESPA1 PITHD1 UQCRH RELN PGM2L1 ATP1A1 TMEM61 CABP1 SUB1 CDK5R2 CLTC GRIN2A CTC-575D19.1 MT-CO3 RPL3 FABP5 NDUFAF3 NEFL TMOD2 SPARC MDH1 COX7C TUBB4B TSPYL1 APP ATP6V1B2 PLD3 OXR1 NCAM2 HSP90AA1 LPPR4 SV2B PNKP PFDN4 SERINC1 STMN3 YWHAQ PI4KA NELL2 ATP6V0C RP11-20I23.1 OPRM1 BIRC5 ARPP19 NUPR1L ABRACL PEX5L RAB6B NAP1L3 NDUFC2 STAG3 CAMK4 MAP2K2 DIRAS2 FRZB NDUFA1 SPRYD3 CPNE4 METTL7A COX14 AC011043.1 STX1B CHCHD2 RPL38 CYBB HILPDA FKBP1A PROM1 CPE MAPK8IP2 NSF UBA52 PSMA7 GABARAPL1 SLC9A6 ACLY ARPC5L S100A6 C14ORF2 MFSD6 CDC37 UBE2V2 IDI1 PNKD CTNND2 UQCR10 NPTX1 RPS26 NAT8L KIF1A BEX1 CX3CL1 EIF5A2 SLC25A5 DCTN1 ELAVL4 TUBA4A RPL11 FBXO40 HMGCR HBQ1 SLC8A2 SCD5 NDUFB8 CCDC25 TMEM59L GRIN1 STX1A STAG3L5P RP11-632C17__A.1 TBCB SNX10 LINGO1 UQCRC2 CTBP1 TOMM7 PPA1 OAZ1 ITM2B EIF4A2 EPAS1 RASGRF2 SCOC YWHAH EIF1 NCEH1 TSPAN7 MZT2B PPP2R1A CDK5R1 RPS4X CCDC74A C11ORF31 PTPRT C3ORF80 PNMAL1 ELMO1 CKB NEGR1 MAPRE2 DMKN BCAP31 HMP19 COBLL1 RAB6A CSDE1 UQCRB LDB2 PSENEN PKM KLHL12 MT-ND4 PFKP YWHAB ANXA1 CMAS PINK1 APOE GPR158 ZNF365 MTCH1 CCDC110 WBP11 C19ORF70 GUK1 ETV5 C1ORF52 RPL21 TMEM132C UQCRFS1 HSPA8 NWD2 RAB2A KLC2 LMO4 ADAM23 GOT1 MAST3 SYT10 PAK1 NDUFB5 FILIP1 PLCB1 SNAP91 TUBB2A DNAJC6 NPTN ATP6AP2 KIF3C RAB7A TPPP RTN3 COX7A1 TMX4 RGS4 KLHDC3 AP1S1 COX5A SLC6A1 APLP1 TAGLN3 CFL2 EPHB6 CHL1 DLD TALDO1 D4S234E ROBO2 LDHB C18ORF32 CBLN4 HRK HNRNPH2 DMTN WBP2 LMO3 SKP1 TXNDC17 PRPS1 FAM84A CYP2R1 PID1 MORF4L1 UBE2D2 TMA7 ARF1 COX7A2 AZIN1 OLA1 AP3S1 NDFIP2 ITFG1 COL5A2 CAPZA2 ELAVL2 ATP5J CDK14 ATG9B MTPN NCDN SOX6 ATP1A3 ATP1A2 COX7B MT-CYB POLR2L POLR2M ATP6V1E1 MAP2K1 PPP2R2C ATP2B4 RPL15 KCNK1 NGEF SH3GL2 ERBB4 RFX8 SYNPR TMTC4 DDN NDRG2 GAPDH RPL17-C18ORF32 NDUFA5 C2ORF80 CA11 F3 FAM163B BMP3 TMEM144 PPP3CB RSL24D1 SYT4 RPS28 COPG1 COX6B1 PHYHIP PPP3CA CISD1 WFS1 CHP1 CCDC85B PPP2CA TCEAL5 SERPINF1 DCLK1 C1ORF115 NPTX2 SNX3 MYL6B PRKACB BANF1 CYFIP2 ADD2 HOPX NUAK1 ATP6V1F PCMT1 STMN2 PSMD2 RPS6 BEND5 PHF11 BAALC EFR3A TRAPPC1 ID2 CALB1 COL11A1 NAPA BSG ARF3 FAM127A SNX17 MLLT11 CLU UBA1 PPP2R2B COX5B APLP2 RAP1GAP2 CPLX2 BIRC3 RPL35 PIP5K1B AP2S1 RAB11A CLTA PTPN20A CMPK1 FABP7 CLSTN1 YJEFN3 ZCCHC17 BASP1 ALDOA COPS7A IGFBP6 TOMM20 EIF4G2 TUBA1B TMEM35 PCSK1N PSAP UBB ATP4A RORB RASGRP1 TERF2IP SERP2 SPON2 RAB40B SNN STMN1 PFN2 PIN1 ISCU TMEM151A GDA FXYD7 MCHR2 SOD1 NTNG1 PRDX2 CORO2B CAMK2G RPS3A OCIAD1 RPL12 CCDC168 STXBP6 FAT3 PACSIN1 COX4I1 KRT17P6 ARL8B STMN4 ATP6V0E2 RHBDD2 C5ORF63 RPS10 MAP1LC3A RPL32 PGRMC1 PSMD8 IFI27 NUDT4 RNASEK-C17ORF49 RPL6 APOLD1 ATP6V1G2 HNRNPA1P40 AC244489.1 PCDHGA10 PCDHGA5 PCDHGA6 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MTRNR2L1 CHN1 CLU CALM2 PSD3 ENC1 GPM6A PRNP MT-CO2 ENO2 ATP1B1 RPL31 MT-CO1 MT-CO3 PPP3CA PSAP PNMA2 DKK3 RTN4 SYT1 FAIM2 SERINC1 RPL36A RP11-111M22.2 SYTL2 OLFM1 RPS26 PHYHIP PREPL MT-ND1 MTRNR2L6 RTN3 UQCRB MT-ND2 CALM1 TUBB4A PRKCB ARL6IP1 UBE2QL1 IPCEF1 ZBTB18 ATP2B2 EIF4A2 YWHAB TMA7 OAZ1 MTRNR2L12 KCNAB2 FAM84A OCIAD1 SSBP3 GNAQ ZNF385D MAP1B REEP5 TUBA1B TSPAN7 MAP2K1 APP STXBP1 PKM GUCY1B3 TMSB4X SLC17A7 RAP2A MT-ND4 SCN1A HSP90AB1 RPS28 CNTN1 BEX1 SERPINE2 THY1 CPLX2 CDK5R1 SARAF NDFIP2 SPARCL1 RPL23A RPL38 PEBP1 RPL37A CERS6 FXYD6 CALM3 RPL26 RPL32 RPS27A MTRNR2L8 GABRA1 SYN2 RTN1 TPPP NPTX1 VSNL1 CLTC RASGRF2 MAST3 ATP1A3 MTPN NDRG4 BIRC5 RP11-219A15.1 RPL41 BEX2 DPP6 DSTN EIF1AX NAT8L MYEOV2 ISCA1 NPTN DNM3 MT-CYB MRPL20 PIK3R1 NRSN2 ATP2A2 PPP2CA TSC22D1 ANO3 BSG PHYHIPL ATP1A1 HEY1 MAPK1 SYT4 SERINC3 SV2B PGRMC1 ARL6IP5 NAPB SIRPA RPL18A CTSD STMN1 RPS3A ATP6V0E2 NAP1L2 TMEM130 RAPGEF5 SYT13 UQCRH RPL13A LMO4 PJA2 ACTB ARF3 TRIM36 HAPLN4 NAP1L3 CA11 CSDE1 CAP2 CHL1 WASF1 WSB2 TOMM20 PEA15 PTK2B ENO1 RPL35 MMD CCK PCMT1 COX6C EIF1 SLC25A22 VAMP2 ATP6AP2 PGM2L1 CAB39 IDS EDIL3 RPL11 STMN4 GRIN2A SCAMP5 ARF5 CLSTN1 ATP6V1A DYNLL1 KIF1A ITM2B SCN3B PPIA RPL17-C18ORF32 RPL17 ARFGAP2 TF CMAS TBCA HPRT1 ISOC1 BAI2 LYNX1 ANLN NFE2L1 MRPL33 PPP2R1A NCOA4 GMFB FAT3 PCDH8 ISCU NGEF CAMK2G FAM19A1 TMSB10 VSTM2A OAT SLC24A2 CLTA CAMKK2 ATP9A STMN2 HSPE1 RAP1GDS1 NAPA ZFAND5 YWHAQ PCDH19 C14ORF2 PPP1CB ARPP19 CNR1 SCOC SYT11 REPS2 ATP2B4 LPPR4 SYNJ1 AP2B1 TMEM70 COX14 ATP5I AES SOX9 QKI KRAS VDAC1 PPP2R4 ROBO2 KCNK1 CTNND2 ARF1 MAP7D1 RPH3A TRAPPC1 GUCY1A3 GDA ATP5C1 LAMP5 RPL17P50 FAM134A NPTXR STX1A NFIA GPR88 PFN2 YWHAG DYNLL2 ATP5E ATP6V0C STXBP6 YAF2 ARL8A MRPL52 SLC30A3 CA10 ABCC12 MTCH1 CACNG3 SLC35B1 RPL7 EID1 MCHR2 DIRAS2 RBP7 FTH1 RSL24D1 CDK17 CYFIP2 RRAGA UBE2N OR6D1P NCEH1 MORF4L2 PRKACB ACTG1 MPI HCN1 KCNA1 MRPL11 GPR158 RPL10A CD63 ZMAT2 H2AFZ ATP5H SMIM13 VSTM2L OPN3 MFSD6 RPL15 RHBDD2 SNRNP25 PTMA SNX10 RPS6 PFDN4 HSP90AA1 COX7A2 ATP6V1G1 SALL2 CREG2 NRCAM NPAS3 CBLN4 NELL1 NUAK1 SLC39A10 PDP1 NDUFA2 NOP10 MZT1 MAP1A GAPDH MAL2 SNAP91 CLDND1 NREP CADM2 ETV5 ADAM23 GSK3A DDAH1 ATP6V1B2 RPL21 CAMK4 RP11-20I23.1 NMNAT2 AK5 MAPRE2 MTND2P28 PHB PPARGC1A HDLBP KITLG BANF1 BSN ARHGDIG TMEM59L HTR2A EPB41L3 HS6ST3 COQ10B TMEM65 RAD23B BCAP31 ASAP2 C2ORF80 TPT1 DNAJB9 LDB2 CDC37 PPP2R2C MLF2 SLC25A11 YWHAH S100A6 EHD3 GUK1 ATP5G2 PRKCE LDHB NEFL ITM2C KCNV1 CKB ARL2BP CD59 GPATCH4 TOMM7 TUBA1C USMG5 STMND1 TCEAL5 GABARAPL2 C1D CD99L2 RAB3A CYSTM1 CLIP3 PRIM1 SCN2B IQSEC1 PDE1A RPL8 DMTN HSPA8 FXYD7 DKK1 HNRNPH2 UROD PPP2CB PPP1R9B SSTR1 OPCML RAB2A SAP18 WBP2 PI4KA ERH REEP2 APLP1 NECAB1 TMEM155 WBSCR17 PAK1 RAB6B RAB1A TSPYL4 ATP6V1C1 NDUFB8 KIF21A SYN1 ARL4C NCDN RAB3B RPL3 EPHB6 RPL6 NUDT4 KLC1 RNASEK-C17ORF49 ATP6V1G2 CYB5R3 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 ZNF385D RPL37A SNAP25 RTN4 RTN1 MORF4L1 UQCRB CCK PRKACB CABP1 TMA7 HSP90AB1 WASF1 CNTN1 PJA2 TSC22D1 YWHAG CA11 TMSB4X NWD2 CALM2 SCN1A NECAB1 DYNLL1 RPL7 SERPINI1 ACTB HOPX ARPP19 PFDN1 MACROD1 PPP3CA SARAF THSD7A ATP5C1 NDUFB8 IDS IMMP1L ACTG1 ENC1 STMN3 PLD3 HMGCR TENM3 APP ATP6AP2 RP11-219A15.1 SEPW1 CD99L2 USMG5 CRIP2 RAB1A TOMM7 MAP1B PIK3R1 TMSB10 RP11-111M22.2 NAPB COX4I1 ARL2BP RPL10A GABRA1 MRPL55 VDAC1 RPS27A PPIH ATP2B2 C16ORF93 GNAQ RPS28 SLC12A5 GRINA NDFIP1 TMEM117 ATP6V0C RP11-20I23.1 ARFGAP2 SSTR2 ENSA GRIN1 PKM KCNAB2 MAL2 SMAP2 RPL3 TUBA1B LPPR4 NPTXR SRP14 OSMR HSPB3 RAB3A KIF1A CDS1 DGUOK PRKCB BSN PSD3 KLHL12 C19ORF70 GNG2 RASGRF2 ANGPT2 STMN1 PNKP BNIP3 IQSEC1 YWHAH MAP2K4 UQCRH PGRMC1 ATP5J2 RPL26 C1QL2 TBCA RPL13A NRGN PSMC1 BEX1 PPARGC1A REPS2 KLC1 ARF5 CLIP3 SYT13 MZT2B ARL8A EIF1B RTN4R CLTA FBXL15 C6ORF141 NDN BSG EDF1 TBR1 SUB1 RAPGEF5 NDUFS5 H2AFZ AP1S1 PTGES3 RPS26 MYEOV2 COX6C TDRD7 NUDT21 LAMP5 IGSF21 SUMO2 CAPZA2 EGR3 C2ORF74 MIEN1 CDK17 CKB PTPRT MT-CO1 DSTN MESP2 YWHAB NDRG4 SPARCL1 RPS4X KIF21A ITM2B C1ORF233 ATP6V1A SLC39A10 DLD RPL23A NPTN MT-ND2 CHL1 NDUFA4 RPL38 PPP3CB NGFRAP1 RP11-195F19.5 NOP10 RPL15 SCAMP5 SERINC3 TUBD1 CADM2 CDK5R1 OAT LINC00116 MRPS21 PRKAR1A NDUFB4 RGCC EFR3A PTPRS SNRPN CLSTN1 RPL39 SLC22A17 ELAVL4 MAP1A RTN3 PGAM1 NRAS SUMO1 CBX3P5 TMOD2 YWHAQ REEP2 CBLN4 PPP2CA MT-ATP6 HIGD1A FTH1 TMEM130 NCDN CD63 COX14 SNX10 PPP2R2C ATP6V1F ATPAF1 APLP2 NEGR1 PNMA2 SYNJ1 SYNGR1 NREP MT-ND1 CHN1 ATP5F1 NDUFA5 OLFM1 MYOM2 KIF5A STMN2 RFK OCIAD1 SOD1 TMEM65 SYN2 PLCB1 NTNG1 NCALD PPP2R1A APBB1 LANCL1 RRAGA ATP5E IDI1 CLPTM1 CDH13 MT-CO3 SALL2 GRIN2A EIF1AX HPRT1 OPN3 TSPYL5 MTCH1 PIN1 COX7A2 OPA1 MAP7D1 TMTC4 CDK14 STMN4 SLITRK1 RPL17 PREX2 JOSD2 THY1 GPM6A TOMM20 NDUFB11 RAB3C UQCRC1 FAM19A1 TRIM36 ATP5I ANKRD20A11P YWHAZ TPI1 TMEM150C NDUFA1 FBXW11 YJEFN3 RGS4 RAB6A TPD52 RLIM ATP5H CACNG3 SNX3 ADD2 NGEF APLP1 GHITM SCN3B PDE1A GNB1 PEX5L RAB2A EIF4A2 NDUFA13 PTGER3 ARPC5L MLLT11 EPHA6 AC244489.1 MTHFS RPL21 C11ORF31 PLEKHD1 RAB3B SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CYB MT-ND1 MT-CO1 MT-ND3 ZNF385D HSP90AA1 SNAP25 CALM1 CDC37 CALM2 MT-CO2 MT-ND4 RP11-111M22.2 MT-ND2 RASGRF1 PPP3CA HSP90AB1 DCTN1 JUNB ATP1B1 MTND1P23 UQCRQ NRN1 ATP6V0D1 UCHL1 TCEAL5 DPYSL2 ATP1A3 PEG10 ATP6V1E1 DIRAS2 KCNA1 VDAC1 CHL1 SYT1 RPL37A NPTXR LDB2 ITFG1 ATP6V1B2 KCNMB4 TMSB10 RAB7A MAP2K4 BSG MORF4L1 NHP2L1 LMO4 RPL21 UROS PPDPF PFDN1 ZMAT2 CREG2 CPE ARPP19 PSD3 PDE1A SERPINI1 PRKCB ATP6V1C1 SIRPA KCNK1 NECAB1 NCDN ELAVL2 VSNL1 RPS6 NGFRAP1 RPL35 RTN1 RSL24D1 MT-ND4L SCOC CLDND1 MTRNR2L8 BAG4 YWHAG CHMP4B SEZ6L2 TRIM36 PRNP MAP4 CRIP2 RAB2A FBXL15 BIRC5 DCLK1 TBR1 PTCHD4 MAPK8IP2 CTSD COX14 PSAP MTRNR2L1 GPR56 RAB6A LL0XNC01-16G2.1 CFH MT-ATP6 NSF IDS MTATP6P1 MTRNR2L6 RELN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RAB3B TMSB10 TMSB4X CALM2 ARPP19 MT-CO2 CALM3 MT-CO1 MT-ND4 RP11-111M22.2 SYT1 RTN3 MT-CO3 CARTPT CALM1 ATP2B2 RTN1 CHN1 RTN4 CCK YWHAH RPL17-C18ORF32 YWHAZ NRGN MT-ND1 SYTL2 FTH1 YWHAG TSC22D1 HOPX RPL38 EIF4A2 PSAP NEFL RPL37A SPARCL1 ATP5E GAP43 OCIAD1 GABRA1 OLFM1 NDUFA4 MT-ND2 TSPYL1 ARL6IP1 LMO4 RPL41 ENC1 GPM6A VSNL1 ATP1B1 TUBA1A PTMA UQCRB STXBP1 COX7C LMO3 CLU NDRG4 DYNLL1 NECAB1 PDCD5 RPL31 MTCH1 PRNP HSP90AB1 SNRPN PKM TPI1 RPS6 COX6C DCLK1 PREPL PHYHIP PPP3CA SLC38A11 SERPINE2 DSTN RGS4 SRP14 RPL32 NRCAM PGM2L1 CKB SARAF STMN2 CYCS PEBP1 CADM2 RPL6 MT-CYB GNG3 THY1 TPT1 AP2M1 DPYSL2 RPS28 NGFRAP1 VDAC3 COX6B1 ATP6V0C SNCA RP11-20I23.1 SERF2 RPL21 ENO2 ATP5I RPL13 SERPINI1 SLC22A17 MTX3 PSMC5 WASF1 ATP1A3 ATP5H MORF4L1 CLSTN1 FAT3 RHEB MYL6B RPL35 RPL18A MYEOV2 SEPW1 FKBP1A DYNLT3 SNX3 APP ATP5J2 NDFIP1 COX5B BEX1 PRKACB MT-ATP6 GDI1 RAB6A MAP1LC3A SKP1 ELAVL2 PSD3 KLC1 GAPDH STMN1 WBSCR17 TMEM150C PINK1 CNTN1 COX8A TBC1D15 RPL26 TF BNIP3 GNAQ PJA2 SNCB RPS27A PPDPF SCN1A STX1A DYNLRB1 ETFB EIF1AX STMN4 EFR3A DYNLL2 CERS6 IDS CREG2 TOMM20 FAM84A ATP6V1B2 NHP2L1 ACTB DIRAS2 HS6ST3 SERINC1 ARF5 PGK1 HSP90AA1 HOMER1 ARL6IP5 FXYD7 NDUFB2 DNAJC6 UQCRQ ATP5J PGAM1 MRPS21 USMG5 SPTBN1 NDUFB8 KLHDC3 SNCG NDUFS5 SNX10 TUBB4A KIFAP3 EPHA6 EDF1 YWHAB EIF1 RNASEK-C17ORF49 ITM2B MAST3 PRKCB SNAP91 GHITM NPTXR LPPR4 NELL2 UQCR11 ANO3 CLTC PRDX5 MT3 NCALD SH3BGRL2 VPS35 ARF3 MAP1B AP2B1 COA3 SCOC TERF2IP ELAVL4 VAMP2 RPS3A MT-ND3 ZNF365 COX4I1 RPL23A KCNV1 TGOLN2 MGST3 SNRNP25 PPIA ALDOA GTF2H2C_2 OR6D1P APLP2 ERH OPRM1 SLC24A2 PPP2CA MAPRE3 HIGD1A SMS EHD3 RAB40B HINT1 UBL5 RORB POLR2I MTATP6P1 D4S234E NEGR1 NDUFAB1 NSF CNGB1 GLO1 TCEB1 ATP5F1 BHLHE40 CHMP5 CHCHD2 ATP5A1 NAPA UQCRC2 CDH13 TPGS2 C1QBP POLR3H MCHR2 RABAC1 NCEH1 TUBB2A CACNG3 SCAND1 NAP1L3 IDI1 APLP1 C14ORF2 LSM4 FAIM2 POLR2K NDUFB5 PEX5L RAPGEF5 LINC01296 TMEM65 LYNX1 FKBP8 SLC12A5 NCDN TAGLN3 SCN1B PCDHGA5 NUAK1 WBP2 RPS4X ZNF725P TBCB PACSIN1 SLC17A7 OAT CAPZB SEZ6L2 RAB6B GRIN2A COX7A2 TMX4 CAMK2D TCEAL5 TMEM230 ATP6V1F PET100 CRYM BCKDHB CPE NPTX1 RRM2B GDA GPX4 KLK5 ACLY TMEM59L C19ORF70 EGR1 SCN2B COX14 PLCB1 DNAJB6 MUM1L1 MTRNR2L1 ITFG1 LINGO1 NDUFS6 RPL7 FAM163B ABHD14A SUMO1 C1ORF52 SULT4A1 PSMD8 MT-ND5 PHPT1 SSTR2 TMEM35 ARHGAP35 NDUFB7 COPE SYT4 RPL13A GOT1 TPD52 RPS15 ATP6V1A ARL1 ANXA6 UBB ZFAND5 MAPK1 OAZ1 GNB1 BCAT1 HCN1 C19ORF53 UBE2QL1 TEFM WSB2 FXYD6 ATP1A1 DPY30 PPA1 COX6A1 ATP5B SV2B CMAS BCKDK ATP9A NDRG3 SCG2 RPL10A MDH1 EPDR1 NDUFA1 SYNPR CDC37 PI4KA RBX1 CEND1 SOD1 HMGCS1 BASP1 TM2D3 NAPB CAPNS1 PFN2 MSMO1 BSN UQCRH SLC9A6 SNN UBE2D2 GRIN1 NEUROD2 SMAP2 MAL2 SYNGR1 NAT8L TCEB2 TLN2 TOLLIP NCBP2-AS2 ATP6V0B INSIG1 RHBDD2 ATP2A2 CPLX2 SLC39A10 GRM3 CA10 ASAP1 ATP5G3 RPL12 TUBB NR1I3 BIRC5 CCDC168 WDR47 OXR1 MET MYL12B CRIM1 BANF1 MTRNR2L12 BRICD5 CBX3P5 ATP5G1 NRN1 IPCEF1 PNKD ATP5C1 TMEM151A SPDL1 HRK KCNH5 NAP1L2 PROCA1 TBCA TPPP LGALS1 RFK TXNDC17 MRFAP1 AP2S1 MRPL37 UBE2V2 NEUROD1 BAI2 PPP3R1 TMEM164 LRP1B DCTN3 SUMO2 RPL11 NFIA SSBP3 CISD1 SYT11 MRPL11 TOMM7 PSMA7 GMFB SERP2 FAM219A MAGED2 CADPS2 SELM FAM19A2 TENM3 RAB11A EDIL3 SLC38A1 NDUFA12 ARF1 PTPRN2 RPL3 CABP1 UBE2N TIGD4 AZIN1 FAM174A RPL15 CASP7 SMIM1 GPR88 PIK3C2G LIPT2 ADAM23 ID2 CTSD RASGRF2 NBL1 RP11-195F19.5 PPP1CB HAPLN4 KIF1A SELT CAB39 SRP9 SYPL1 PPP3CB RAB3C SLC25A5 MT-ND4L CDS1 TMEM14A MLF2 LINC00116 YJEFN3 NNAT BRK1 ARPC5L UROD PRDM8 PSMB5 NGEF IDH3A PBX3 C14ORF132 C4ORF3 MMD ATP6AP1 CAMKK2 BEX4 MLLT11 RAB1A KCNMB4 PTGES3 AP1S1 TMOD2 CSDE1 ELMO1 DIRAS1 JUND ARL8B APOD DPP6 SYNPO MB21D2 CNTROB GMFG SLC30A3 NDUFB1 MAPRE2 ADD2 ACOT4 PPP2R2B MTRNR2L6 CLIP2 COX7B SMIM13 TMA7 RPS12 ROBO2 CCDC184 RAB7A LAGE3 NFE2L1 NPTN PTPRS DNAJA1 C9ORF16 GRINA CHL1 DDAH1 DCTPP1 ARL2BP SYT5 PRKAR1B MTRNR2L8 ASPDH TRIM47 MPC2 AURKAIP1 DNAJB9 RAN RASGRF1 LAMTOR5 COX17 GPR171 GDE1 TCEA2 IGFBP6 STMN3 CMPK1 KIF21A SDHAF1 PEA15 ZBBX GABARAPL2 RPL39 CCDC115 TMEM160 SLC6A17 SIRPA GSTO1 NTNG1 COX5A PCBP1 ALDH5A1 TRAPPC1 RASGRP1 PRDX1 RHOB ATP5O POU3F1 RAP2A SDCBP PPP1R9B CACNB1 RHOA PIN1 TUBA4A NDUFA11 DOCK10 GPCPD1 UQCR10 TOMM70A SH3BGRL3 REEP5 FNDC4 ATP6V1G1 SUMO3 ATP6V0D1 DYNC1I1 KIF5A FKBP4 GPR116 GPR6 STX1B OTOA SEC61G NME1 PSMD2 UBA1 SCD5 SPOCK1 MAP2K2 ITM2C PCMT1 TMEM147 SPOCK3 HPCA MTPN CTNNA2 FTL IQSEC1 HILPDA CYP2R1 C2ORF80 WARS NMNAT2 NPAS3 HMP19 MKX THYN1 JUN SLC1A2 C3ORF80 SLIT1 MRPL55 GUCY1B3 PTK2B PCDH19 MAP1A LZTS1 MAPK8IP2 RAB3A COQ10B NEFM EPB41L3 CTXN3 ABCC6P1 RCAN2 LUZP2 RP11-97O12.3 FILIP1L ALCAM TCEAL2 POMP SRP54-AS1 RAB4A KLC2 NDUFA5 FAM127A ANXA7 ZBTB18 ABRACL RP11-133L19.3 PRKCE ATP6AP2 KCNF1 B3GNT1 TESPA1 CAMK4 PMEPA1 SLC8A2 KCNAB2 VSTM2A RNF208 FRMPD2 SLC35B1 TMEM141 TKT S100A6 SGK223 ACTR1A ISCU PLD3 OPN3 SEMA3A DPY19L1 GYG1 GUK1 OLA1 ACTR10 PIP5K1B NGRN NRSN2 DKK3 MAGEH1 TRIM37 EIF4G2 EIF1B VAPB BTBD1 PREX2 NDUFA2 ENOPH1 KCNC2 NOS2 ARL8A EGF AKAP12 RP11-632C17__A.1 RSL24D1 TSPYL5 ASAP2 UROS PRUNE2 COMMD6 PFDN1 LDB2 BEX5 RPL36A C12ORF49 VDAC2 GTF2B VDAC1 FAM149B1 MAGED1 BSCL2 MDH2 GADD45GIP1 FUNDC1 RPH3A SYT13 TUBB3 UBE2M PFN1 TEX40 SPRYD3 NARS RPL8 PGRMC1 TXN ETV1 TUBA1B CAPZA2 PNMA2 CHRDL1 MZT2B FIS1 TRHDE STAG3 AC005042.2 CHGB DCTN1 PAK1 MPPED1 PRDX2 DCLK3 RANBP1 PCGF1 PIK3R1 DAB2 CD63 NDUFA13 RPS10 NUDT21 LDHB APOLD1 ATP6V1G2 CDH8 LAMA2 RPS26 RPL17 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 SYT1 CHN1 MT-ND4 CALM2 ENC1 NRGN SNAP25 MAP1B GDI1 GPM6A SERINC1 MT-ND3 TSC22D1 SYTL2 CALM1 ATP1B1 ARPP19 NPTN MT-CYB RTN4 MT-ATP6 CALM3 HSP90AB1 RGS4 RTN3 YWHAZ DCLK1 CNTN1 CABP1 CDK5R1 CLU ZBTB18 OLFM1 SLC39A10 PJA2 EIF4A2 HOMER1 NECAB1 EGR1 TMSB4X FKBP1A FTH1 PLD3 PKM MTRNR2L12 YWHAH MT-ND2 HTR2A STMN2 GRIN2A PNMA2 LMO4 CAMK2G NAPB GAPDH PPP1CB SPARCL1 RAN MTATP6P1 PRKACB RP11-20I23.1 OXR1 TMSB10 UCHL1 TSPAN7 REEP2 RTN1 RNF11 LMBRD2 DPYSL2 TOMM20 STMN1 TSPYL1 SERPINE2 ACTB VSNL1 PRKAR1A SELT MAPK1 PRKAR1B RHEB ATP6V0C MT-ND5 ATP2B2 PHYHIP CADM2 SNCB PSAP SCN3B TAGLN3 ACTG1 CCK DNAJC21 TBC1D15 NDFIP2 CLSTN1 PDP1 PTPRS NDFIP1 GMFB JUND TGOLN2 FAIM2 TMEM130 TESPA1 RAB3A SARAF KLC1 COX6B1 GABRA1 NGFRAP1 BASP1 SLC17A7 MTRNR2L1 TIMP2 NEFL RHBDD2 PPP3CA STX1A MAP2K1 HOPX MT-ND1 ATP2A2 PSD3 SERINC3 UQCRH NAT8L SLC12A5 SLC9A6 GRIN1 SLC30A3 PRNP GUCY1B3 MT-ND4L APP HMGCS1 MAST3 ADCYAP1 RPL15 ATP6V1G1 NDRG4 MTCH1 ITFG1 CHL1 APLP2 THY1 ENO2 SCOC PTMA BTBD10 ITM2B CPE IDS ARL6IP1 BSN TUBB4A EPHB6 PVRL1 TMEM70 RASGRF2 UBQLN2 DYNLT3 RABAC1 PMEPA1 TOLLIP NCDN MMP24-AS1 SLC1A2 TMEM151A ATP6V0E2 ATP1A3 PTK2B ADAM23 CLTC PITHD1 SYT11 CEND1 DYNLL1 SCAMP5 AP2B1 ERH PRKCG SULT4A1 TM2D3 NAPA SPOCK2 INPP5F ELAVL4 EIF1AX SGK223 SNX10 FAM84A HSP90AA1 ISCU RPL41 HAPLN4 NEUROD6 PPIA CAMK4 CAP2 MGST3 LPPR4 PRUNE2 NR4A1 CREG2 WBP2 CLIP3 DKK3 TENM3 CORO2B CD63 GPR26 RPL36A MAP4 CSDE1 PEBP1 SERPINI1 CX3CL1 PREPL NMNAT2 SLC7A5 AK5 SLC22A17 RP11-111M22.2 TMOD2 CDK5 NDUFA11 PAX7 CADM3 IMMP1L MAPRE3 SNCA WASF1 PEX5L PPP3CB PPP2CA CKB SLC25A11 TUBB2A EGR3 DNAJC6 AZIN1 BNIP3 COL11A1 IPCEF1 PGAM1 SLIT1 ANXA6 JAKMIP1 SNAP91 YWHAG C1ORF115 SYNGR1 BEX1 ARF3 OAZ1 FOS DHCR24 ARHGAP29 STXBP1 DMTN YWHAQ EPDR1 YWHAB MAPRE2 ATP6V0B DDAH1 ENO1 CAMKK2 NEFM CFL1 EFR3A RPS28 RP11-219A15.1 MTRNR2L6 ETFB MIR6723 OR6D1P YJEFN3 TKT RAB40B NAP1L2 PCSK1 LSM4 RAB11A INA GRINA BAI2 NDUFS6 PSMD8 D4S234E FKBP8 NPTXR MPC2 CLPTM1 OPA1 NCEH1 MAP7D1 ANAPC13 COX5A TPPP UBE2QL1 TMEM14A GNAQ EPS15 UBE2M LZTS1 CERS6 HMGCR PGRMC1 ATP9A COL21A1 DNAJB9 GNB1 SRD5A1 MRPL33 WARS NDUFS5 CACNG3 ATP5C1 SHARPIN ATP6V1E1 CDK17 LDB2 SYNPO NDUFB10 SSBP3 CACNB1 PIN1 FAM150B SYNJ1 MAPKAPK2 TBR1 ATXN10 MRAS MAL2 SYT4 ELAVL2 GPCPD1 MPI MYL12B TPRG1L SLC6A17 KCNH5 NEGR1 NRN1 CTXN1 TBCB BSG RAPGEF5 KCNC3 GSK3A NDRG3 C19ORF43 RAB11FIP5 GDF10 EFHD2 ATRN SRP14 ARF5 PFN2 PLP1 LDHB MPPED1 COL5A2 ACTR1A BAG4 NREP EFNB1 EGF RPL18A GABARAPL1 B3GNT1 HS6ST2 CXXC4 VDAC3 DYNLL2 HSPA8 RANBP1 NDUFB2 RPL39 FBXW11 UTRN PCP4 FAT3 LRFN3 PSMD12 TPI1 PRKCB BRK1 RNA5-8SP6 DACH1 HSPBP1 PPARGC1A RASGRF1 CRIP2 PPP2R1A TLN2 HN1 ENOPH1 VAPB TUBA1B CDKN2D IQSEC1 NSF NGRN RAB4A EIF1B PARM1 BHLHE40 CTNNB1 CTU2 GSKIP BIRC5 CTNNA2 RILPL2 PPP2CB FAM127A SLC38A1 KCNAB1 HDDC2 GSG1L SCN1A BEX5 FLOT2 RNF208 RPL38 TCEAL7 DCTN1 SRM ATP6AP1 TMTC1 MRPL20 KCNV1 ATP5G3 SPCS2 KRAS EIF4G2 GHITM RPS15 NPTX1 MT3 OCIAD1 FBXL16 NGEF HEY1 TMX4 LYNX1 RAB3C DUSP6 DNAJA1 CAPNS1 MFSD6 KIF1A KCNK1 CLDND1 SNCG CTSD KCNAB2 NDUFA13 WASL LINC00116 TUBA1A ZFAND5 STRAP ARF1 FKBP1B YIPF3 SPOCK1 COX6C TMEM132D RHOB CCDC184 DNAJB6 CDK14 CA11 ATP2B4 PSMB7 C1ORF95 FNDC4 NCAM2 KIF3C ATP1A1 EFHC2 PEA15 SKP1 RFK RPL35 RP11-195F19.5 RPH3A SNN ARHGDIA MANBAL SIRPA RORB SHD MLLT11 CARTPT GPX4 CLTA PSMC3 SUCLA2 SPTBN1 COL24A1 RAMP1 ZBTB20 NAP1L3 THOC7 TERF2IP FAM163B VDAC1 LANCL1 RLIM PRKCE IGFBP5 ATP5I PRDX5 CPLX1 JUN ISCA1 SCD5 WSB2 HMP19 CBX6 FAM19A2 MORF4L2 APBB1 VPS35 CYFIP2 EDF1 DNER GAP43 C3ORF80 COL12A1 TPT1 LAGE3 COPS8 CHCHD2 CTXN3 ADD2 GABARAP SLC25A6 PTPRN TUBB4B SUMO2 HINT1 EPHA6 AP2M1 NUTF2 MSMO1 CAMK2D FBXO8 PLS3 NDUFA5 EGFL7 MAP1LC3B CRYZ SCN5A FUNDC1 SMS ACOT7 WBSCR17 PSMC5 SUSD4 ATP6V0D1 RPL13 ITM2C RTN4R UBA1 COX7B CAB39 SUMO3 CDC42SE2 TPD52 MCHR2 FAM219A TSPAN33 TALDO1 ETV5 LMO3 TPGS2 CCDC25 PFDN4 TMEM59L COX6A1 FRMPD2 RPL13A NUDT4 TUBB3 RPL17 RPL17-C18ORF32 UBE2F RPL26 ATP6V1G2 PCDHAC1 PCDHA10 PCDHA9 PCDHA4 ARFGAP2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 CALM2 RPL31 TMSB4X RP11-111M22.2 SYTL2 STXBP1 SLC39A10 PREPL MT-CYB CALM1 RPS15 MT-ND4 MTRNR2L1 MT-CO1 RPL26 RTN4 EIF4A2 TPD52 DYNLL1 NRGN RPL32 RAB6A RTN1 MLLT11 ATP1A3 HSP90AB1 RAB3B ACTB ATP6V0B CABP1 PRKACB MT-ND2 FTH1 CYCS RHEB PTMA NGFRAP1 STMN1 SYNGR1 RPL10A CHN1 C18ORF32 ATP1B1 ENC1 USMG5 MAST3 NRN1 CADM2 SRP14 PEX5L OLFM1 MT-CO2 NREP WASF1 CALM3 UQCR10 RPL38 CKB MAP1B ATP6V1F BSN GNG2 SV2B MT-CO3 TUBB2A ZNF385D NDRG4 DLD MT-ND1 PPP2R1A HMP19 NDUFA11 RANBP1 COX4I1 SERINC1 PKM RPL35 BASP1 WASL VGF LDHB SERPINI1 UBE2QL1 C19ORF43 PENK SYT11 HSP90AA1 PPP2R2B PRNP ACOT7 TCEA2 TUBA1B C19ORF70 ENO2 NECAB1 ATP5E DPP6 ADAM23 PDP1 DIRAS2 RTN3 PNMAL1 LAGE3 OLA1 DRAP1 TMEM155 THY1 RPL37A TMSB10 SNCB PEBP1 DPYSL2 TMA7 GNB1 MED10 VAMP2 ACLY B3GNT1 UQCRH BEX4 ATP2B2 DYNLRB1 TPT1 PFN2 GRIN1 NGEF MRPS21 TMX4 RPL41 DNAJC5 PRKCB CLTC BAI2 SNCA NBL1 NDUFB8 RAB40B ARF1 NDFIP2 PNMAL2 TOLLIP IDS OPA1 NRCAM LMO3 CIAPIN1 LGI3 C14ORF2 ARPP19 UQCRC2 PDE1A STMN4 NAP1L3 SPOCK1 SCOC MAP4 PRKCE MTRNR2L6 RPL13 NR1I3 CTC-575D19.1 NSF BSCL2 NDUFA5 SYNGR3 TM2D3 FKBP1A FAM219A KIF21A YAF2 NFIA CORO2B LMO4 RAB3C CA4 SLC6A17 PSAP RLIM PNMA2 RPS28 UBA52 SLC7A1 SPRYD3 UQCRB NUDT21 PPIH RAB3A AP1S1 TAGLN3 FABP6 GAP43 KCNMB4 FAIM2 PCBP1 RPL21 PGM2L1 GUK1 RPL3 CNTN1 H2AFZ YWHAH PPP3CA KIF1A MAP1LC3B GABARAPL1 ATP6V1A CTNNB1 RGS4 NEK7 SLC25A5 CTNNA2 BEX1 CDK5R1 FAM174A CLSTN1 PLOD2 RAPGEF5 EGFL7 ATP5F1 S100A6 SRM CAPZA2 KIF3C FGF12 PRSS3 SEZ6L BSG STMN2 NDRG3 CFL1 GCNT1 NPTX1 MTND2P28 SLC2A1 GPX3 HTR1F MAP2K1 SOD1 ATP6V0D1 PTPRN CHCHD2 CADPS2 ATP5G3 RPS27A CLIC2 PPP1CB BEX2 EPB41L3 ATP6V1C1 GOT1 SLC25A4 IQSEC1 ITFG1 PGRMC1 PINK1 TSPYL4 CPE RPS4X YWHAB CTBP1 SLC25A11 ATP5O GFRA2 C1S RAN MIEN1 NCOA4 HS6ST3 GRIN2A ALCAM ETFB TMEM130 MPC2 NDUFAF3 TKT REEP5 MET ANO3 SAP18 COTL1 HINT1 IL10RA CHL1 NAPA GSK3A TBCA RHOB GADD45B TOMM20 ATP5I LAMA2 C1ORF115 FAT3 PSD3 CLTA RPL8 ATP9A SCN1A CD63 FTL DNM3 UQCRQ BCAT1 OXR1 FIGN ATP6V1E1 HSPE1 RPL12 GAPDH BNIP3 CDKN2D CNTNAP5 ARF3 PSMA7 SH3GL2 ANGPT2 KLF10 MSMO1 JAKMIP1 WBSCR17 YWHAG MRPL11 ENSA ATP6V0E2 CHMP4B NDUFB11 WSB2 NOP10 CDS1 CYC1 NDUFB1 HAPLN4 PNKD CCK GALNT12 RPL39 ZNF365 B3GALT2 CTSD BANF1 TMEM117 MFN2 ATP5G2 TOMM7 POLR2I NDFIP1 UQCR11 AP2B1 PHYHIPL AK5 YWHAQ ATP5G1 MAP2K4 SCAND1 AP2M1 EGR3 RAP1GAP2 ELMO1 SMS CDH8 RAB6B INHBA STXBP6 POLR2M BTBD1 BRK1 NCAM2 MRPL33 COX6B1 ARPC4 WBP11 DKK3 NDUFS6 BIRC5 PCDH8 TPI1 NDUFB4 SERINC3 MT-ND3 SCN3B UHMK1 ARL8A YWHAZ PRKCG MRAP2 ACTR10 APLP1 TENM3 COX7C PFDN1 MT-ATP6 RAB2A FKBP1B TPGS2 NDUFA13 COPRS PPP2CB ZFAND5 ZNF804A RP11-664H7.2 MT-ND5 ATP5J MRPL37 RPL26L1 FKBP8 RPL15 NDUFA1 MTPN NAP1L2 MORF4L2 SLC38A1 GLRA3 REEP2 CPLX1 ARL6IP1 HOPX NEFM CD99L2 MYL6B GPX4 UBE2N SCD5 CYFIP2 WBP2 MTRNR2L12 PRDX1 CAMKK2 TSPAN7 PPIA PACSIN1 SCN1B RABAC1 NPTN LSM4 DDN HPCA FAM134A JUN HDHD1 NDUFA4 NDUFS5 POMP SERF2 TUBB3 NUDT4 RPL36A ATP6V1G2 AC244489.1 PCDHGA5 PCDHGA10 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN4 NRGN TBC1D15 HNRNPA1P40 GLRA3 AK5 SSUH2 ATP1B1 PRDX5 RPL36A CHN1 APLP1 CREG2 SMS MT-CO3 SYT1 PRKCB DMKN BIRC5 ATP6V1B2 SLC22A17 ENC1 VSTM2L RTN3 CLTC RAB3B SYTL2 ESCO2 AP2M1 RGS4 RPH3A VAMP2 RPS28 ZFAND5 FAT3 RPS12 OR6D1P CNGB1 EIF1B RPS15 CPLX2 SV2B C20ORF24 ARPP19 NBL1 GPR37 CX3CL1 SLC9A6 PDE1A CALM2 RAP1GAP2 NAT8L LDB2 PPP3CB DCLK1 TMSB10 TMEM151A CSDE1 ADSS DNM3 ACTB PREPL COX4I1 MFN2 ATP1A1 MT-ND3 LMO3 GDA MT-CO1 MAPK1 MT-CO2 DPP6 BEX4 PRNP VAPB SLC39A10 PRUNE2 DDAH1 MT-ATP6 UROS UQCRH ARL2BP FAM131B SOD1 FKBP1A JUND REPS2 RP11-111M22.2 TMEM59L RTN1 WASF1 GNAQ CDKN1A MAL2 ATP5J UBC DLD KCNK1 CCDC25 FBXW11 TF ATP5I GNB1 NCDN PSAP COX6C MYEOV2 PDP1 DMTN SNAP25 HINT1 ANO3 GAP43 CHGB RHBDD2 SARAF CCK PEX5L RPL26 CALM3 MORF4L1 CHMP4B ARL6IP5 TUBA1A CKB UBE2D2 C12ORF57 HSP90AB1 TESPA1 HSP90AA1 IGFBP6 CA11 CMAS SUCLA2 SPRTN CYCS NDUFB10 SEPW1 CAP2 ATP2B4 RPL41 DIRAS1 ITM2B ASB13 NECAB1 CALM1 ATP5E CDH22 MAP2K1 NGFRAP1 HPRT1 SLC30A3 RPL3 FBXO2 PAQR9 DPF3 SMAP2 STMN1 CERS6 PPP3R1 ALG3 NSF RPS3A RNASEK-C17ORF49 ARF5 ATP6V1G2 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D PPP3CA ATP1B1 RAB3B SNAP25 MAP1B CALM2 RTN4 GPM6A MT-CO3 CALM1 MT-CO1 GAPDH MT-ND2 CHN1 CCK MT-ND4 RTN3 SYT1 PRKACB TSPYL1 TMSB4X CLU SLC22A17 ARPP19 NECAB1 PRKCB PSAP MT-CO2 VSNL1 SLC39A10 CPE PSD3 HSP90AB1 YWHAH CHL1 PRKCG PREPL ENC1 SKP1 NRGN GRIN1 MT-ND1 PRNP NRCAM PNMA2 MT-ATP6 OXR1 TUBA1A CLTC RP11-111M22.2 AK5 ENO2 CREG2 TMEM59L ACTB PTPRS PGM2L1 RPL37A RPH3A DKK3 CABP1 YWHAZ CALM3 UCHL1 ATP2B2 PJA2 PDP1 CLSTN1 PCMT1 NGFRAP1 AP2M1 MT-CYB TUBA1B WASF1 SERINC3 APLP1 HSP90AA1 COX4I1 HOPX GHITM RTN1 SYTL2 CEND1 REEP5 SCN3B SEZ6L MTPN KIF5A ARL6IP1 CFL1 APLP2 GABARAPL2 SLC17A7 PPIA HMGCS1 C14ORF2 DNAJB6 ITM2B CTNNB1 MLF2 PIK3R1 KCNC2 CRIP2 NPTX1 PLD3 TUBB2A BSG PHYHIP NGEF TSC22D1 RHBDD2 GABRA1 YWHAB ATP2A2 GOT1 SPTBN1 RAB7A EPB41L3 SERINC1 FAM127A MTATP6P1 YWHAG STMN1 PCDHGA5 SPARCL1 GAP43 KIF21A NDUFA13 PPP3CB NELL2 MT-ND3 BIRC5 OPCML SUMO2 NDUFB1 TESPA1 SH3GL2 GRIN2A RGS4 GABARAPL1 ARHGDIG HNRNPA1P40 ARFGAP2 ATP1A1 CAPZA2 BEX1 STMN3 MAP2K4 RAB6B MPL TOMM20 RNF11 NRSN2 UQCRB PTK2B PRKAR1B GUCY1B3 SYN2 TPI1 FAM84A PPP2R2C APP RPL13 NDRG4 MRPL20 RPL31 VDAC3 PKM PEA15 TMOD2 CAB39 DMTN ISCU EGR3 CYCS ANO3 RAP1GDS1 FABP7 LMO3 MAPK1 THY1 SYNGR3 RPS12 RPL41 OLFM1 RPL13A C14ORF132 HSPA8 STXBP1 NHP2L1 GRM3 TOMM7 ZFAND5 STMN2 GUK1 PI4KA VSTM2A SNRPN ANGPT2 SPAG17 DSTN TOLLIP TMEM147 CYFIP2 CISD1 MFSD6 PLCB1 SNX10 YR211F11.2 PCDHA4 NEGR1 ATP6V1B2 SMAP2 MDH1 UBA52 CTC-575D19.1 FKBP1B DYNLT3 MRFAP1 TCEB2 CAMKK2 STMN4 DYNLL1 BAI2 BSN KLC1 RAB2A VDAC1 ACTR10 NDUFA1 BLOC1S1 PTPRN SOD1 TPD52 C1ORF56 MTX3 OPN3 MAPRE3 UBB PPP2CA OAZ1 COX6B1 GPR171 LMO4 GDI1 CADM2 RAB6A ZBTB18 MFN2 CDC42SE2 JAKMIP1 ZNF804A NDUFS5 CKB NDUFAF2 GNG2 TUBB4A MTRNR2L12 NREP UQCR10 HCN1 MCHR2 PEX5L TPT1 CACNG3 FSCN1 RPL21 TUBD1 TERF2IP ATP5O UQCRH MAST3 RAPGEF5 NIPA1 NFE2L1 MRPL55 NR1I3 PCDHGA6 SLC1A2 COX5B MAP2K2 TUBB4B RPL10A ARL4C IQCK SUMO3 TM2D3 REEP2 MAGED1 NDUFAF3 CNGB1 SNX3 MTRNR2L1 PSMA7 C2ORF80 CRKL ADSS HMGCR MRPS21 UBE2V2 RSPH9 PRKCE SLITRK1 ZBBX KCNAB2 CA4 CLTA USMG5 INPP5F ARL6IP5 HN1 STRAP ITM2C ONECUT2 YWHAQ MT3 MTRNR2L8 GPX4 FILIP1 TEX2 MMD OPA1 PPM1A FXYD6 PCDH8 ITFG1 LCNL1 FAM19A1 PET100 GPD1 C1ORF95 TKT NELL1 RAD23B RAB37 NBL1 RASGRF2 TAGLN3 GADD45GIP1 FAM174A SRP14 GTF2B SIRPA MTRNR2L6 MYL12B RELN ATP6V0C ATP2B4 SUB1 TMEM230 GRINA SPRYD3 TPGS2 SYNPR NAP1L5 GPX1 TSPYL4 PACSIN1 KCNV1 LDOC1 NDUFC2 NPTN ARL8B SQLE TUBB3 RPL7 ZMAT2 CHP1 BCL11B ATP1A3 OST4 ATRN ATP6AP1 KCNMB4 EPDR1 FAM229A SYT17 KIAA1045 CYP26B1 NTNG1 UQCR11 C9ORF16 COX7A2 WBP2 CTBP1 RASGRP1 TUBA4A BANF1 ELAVL2 COX7C MRPL33 TMEM130 CA11 UQCRC1 CORO2B EPHB1 TPRG1L RHOA FAM96B AKAP12 ADAM23 SLC12A5 C11ORF31 TCEAL7 TMX4 OCIAD1 NAT8L CDK14 NPTXR BEX4 TSPAN7 CDH13 CHMP5 RPL38 ATP5F1 HEY1 CDHR1 NAPA RP11-195F19.5 MAP1LC3A SERPINE2 GSTO1 FBXL15 CNTN1 SCAMP5 LPPR4 RPL32 MORF4L2 DIRAS2 FXYD7 MORF4L1 COX5A FTL ZNF880 SYT11 PAFAH1B2 POLR2K MPZL3 CLIP3 CTU2 HK1 ARF1 ATP6V0E2 ATP6V1E1 TMSB10 TCEB1 SLIT1 PPP3R1 PINK1 EGR1 RPS4X HINT1 RPL39 GJB5 UBC CNR1 NDUFV1 FBXL16 LDOC1L SYNPO SYT4 SLC25A6 PNKD NCAM2 PDE1A RPL36A SDCBP OR6D1P DHCR24 CAMK4 EID1 BASP1 HSPBP1 PTPN20A ALCAM RPL26 PAK1 RFK CDK5R1 EPHB6 JUNB KIFAP3 C1ORF115 ZBTB45 SLC8A2 MAL2 PPP2R1A AP1S1 FAM19A2 SEPW1 RABAC1 ANAPC13 KCNK1 RCAN2 CDKN2D HAPLN4 GALNT12 PRUNE2 SLC25A53 DPP6 MT-ND5 PITPNA VAMP2 CADM3 HMP19 BTNL9 CDC37 SPCS2 SUCLA2 SV2B ACTG1 ATP5B CAP2 DCLK1 MFSD2A FAM134A NCALD IGSF21 FTH1 REPS2 PTMA EIF4A2 SPOCK2 NDUFA8 ATP5J NDUFB7 TMEM132D FIS1 CCDC85B FAIM2 NCEH1 RPL35 RPS6 LAMP5 PSMD8 GPR98 MYOM2 CHI3L1 DYNC1I1 ATP5A1 RAN ALDOA NMNAT2 AES JUND NAP1L3 PFDN4 SH3BGRL3 TBCA SLC24A2 DNAJA1 SYT13 PCDH19 IDH3A BSCL2 HSPA4 RASSF3 MYL6 SPOCK3 VSTM2L PCBP1 WSB2 SERF2 UQCRC2 PCDH17 ZNF365 VPS35 CRYM FOSB ADD2 MYBL1 BTBD10 MZT1 RP11-20I23.1 PPIH CENPVP3 CDH8 RNF208 NUAK1 NSF CBLN4 APBB1 TMSB4XP4 MLLT11 EGFL7 NDUFB4 RRAGA GPR26 UBA1 LDB2 TCEAL3 THSD7A NNAT NGRN SARAF BDNF WASL CPLX1 PRDM16 STX1B TBC1D7 ATP6AP2 EIF1 NRF1 HS6ST3 SYNJ1 SLC25A4 KIF3C ARF5 NEFL OAT ID2 PPP2R4 ATP6V0D1 MAP2K1 PTGDS PHYHIPL MARCKS BUB1B TMC2 COPS8 KLC2 LRRIQ1 CXCL14 NWD2 TRABD2A SCN1A PCDHGA10 PDCD5 H2AFZ NDFIP1 CYSTM1 HOMER1 C1ORF52 ATP6V1G2 RPL3 RNF212 PSMB3 RPL17-C18ORF32 RNASEK-C17ORF49 COX6A1 NUDT4 PSMC1 RPL17 IDS\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 CALM2 MT-CO2 CHN1 CALM1 RTN1 SYTL2 MT-ND4 MT-CO3 GPM6A RAB3B NECAB1 RTN4 NRGN CDK5R1 ENC1 PPP3CA LMO4 TSPYL1 ARPP19 HSP90AB1 TUBB2A CLU APLP1 ATP1B1 SPARCL1 SEPW1 MT-ND2 EIF4A2 GRIN2A ATP1A1 YWHAG PRKCB MTRNR2L12 MT-CO1 SLC22A17 ATP6V1A GDI1 CALM3 CCK PGRMC1 SERINC1 PREPL RPL37A CREG2 NPTN ATP2A2 GAPDH NGFRAP1 HNRNPA1P40 MDH1 PPP3CB PRKACB CLSTN1 PRNP CKB YWHAQ GHITM ACTB RPL38 NDFIP2 CADM2 CBLN4 C14ORF2 RPS15 MT-CYB VSNL1 LMO3 YWHAZ PJA2 STXBP1 SYT11 HSP90AA1 RPL21 TBC1D15 ZNF385D PSAP SCN3B CNTN1 RLIM TMSB4X PKM TSPAN7 OLFM1 EPB41L3 TUBA1B CABP1 PGAM1 MT-ATP6 VAMP2 DCLK1 SCG2 RP11-111M22.2 CDH13 SCN1A GRIN1 DKK3 HMP19 NDFIP1 SIRPA ATP1A3 PSD3 NAP1L2 BNIP3 APP NPTXR DNAJA1 RPS12 CAMK4 ARL6IP1 RPS28 KCNA1 B3GNT1 SUMO2 GUCY1B3 SLC24A2 STMN2 PRKAR1A KIF5A PNMAL1 ATP6AP2 ZBTB18 ENSA FXYD6 RAB6A TESPA1 UQCRQ SLC39A10 RPL36A SERPINE2 RPL31 FAT3 BEX4 NPTX1 SUSD4 FAIM2 PPP1CB NEGR1 HPRT1 NAT8L LDB2 NDUFB2 OCIAD1 TMSB10 SH3GL2 KCNK1 TBR1 RPL26 AK5 MYL6 RPL41 ENO2 SLC9A6 SARAF SYN2 RTN3 NEFL OPA1 RAB6B CAP2 MARCKS GRINA YWHAB ARL8B RAB3A ATP6V0E2 PIK3R1 NUAK1 RPL13A ATP6V1B2 SLC12A5 WASF1 ATP5J2 ARFGAP2 RP11-20I23.1 ATP6V0C IDS PHYHIP SV2B SMAP2 KCNAB2 RGS4 SLIT1 RAN PPP2R1A LMBRD2 PNMA1 TCEB1 RAB3C WBP2 SYNJ1 PLD3 MTRNR2L8 REEP5 RPS3A PCP4 BSN NREP SNRPN H2AFZ PDE1A MT-ND3 HCN1 TMA7 AP2B1 SUB1 TMEM59L TOMM7 TLN2 RPS6 ITM2B GLO1 PI4KA RASGRF2 C1ORF56 PCDH8 RPS19BP1 VPS35 CADM3 MTATP6P1 ELAVL4 ACTG1 IPCEF1 RSL24D1 CSDE1 THY1 CLIP3 DPYSL2 STMN1 BAD RPH3A CADPS2 ATP2B4 MAP1LC3A SPCS2 COPS8 ATP5E PARM1 YJEFN3 TUBB4A SEZ6L REEP2 CDH22 CD99L2 AP2M1 RPL13 ATP6V1E1 FAM134A ITFG1 ISCU CHL1 KCNC2 DIRAS1 MBOAT7 RAB1A ARF3 SPOCK1 RPL6 HS6ST3 RPL39 CLTC TM2D3 KLC1 TSPYL4 PPP2R2C CERS6 RPL12 RPS27A CPE RCAN2 FTH1 SQLE FSCN1 RPL35 YWHAH PPP2CB CDK17 NAP1L3 PRKAR1B PTMA TMEM130 TUBA1A SLC17A7 OXR1 SYN1 ATP5B APBB1 SULT4A1 BEX1 SYT5 NDRG4 MORF4L1 CPNE8 VGF STX1B MYEOV2 RPL11 DYNC1I1 FABP3 PEA15 SYT4 PLEKHD1 RP11-219A15.1 EPHB6 NSF CFH CMAS PHPT1 UBE2M ADD2 ATP9A KIF21A HMGCR YAE1D1 CX3CL1 HSPE1 FAM3C HEY1 NDUFB8 SNAP91 CLTB HOMER1 CAPNS1 NDUFA8 SKP1 ATP5F1 PPARGC1A PLOD2 HSPA4 ARL6IP5 CLPTM1 VDAC1 SLC25A6 JUND SLC7A1 TMEM141 BLOC1S1 RPS4X MTPN LPPR4 PEBP1 TUBA4A NUP37 NCBP2-AS2 CBX1P1 MTRNR2L1 RASGRP1 POLR2L MAP2K1 NUDT21 VAMP1 PRDX5 CCDC124 ASAP2 ARPC4 TCEAL2 BDNF CHMP5 DCTN3 PRKCE CALN1 CAPZB CTNNA2 NDUFA4L2 ADSS SOX6 ZNF208 CAMKK2 NDUFS5 CHGB FBXL16 SPHKAP ENO1 RPL32 ZNF365 UQCRFS1 SLC38A1 LZTS1 MTCH1 DPP6 DYNLL1 IDI1 SLC8A2 ATP6V1C1 CYFIP2 NDUFA4 KIF1A NR4A1 APLP2 CAMK2N2 CCDC68 C1ORF233 MAGED1 ZFAND5 PPP3R1 GAP43 UBA52 TMEM120A BASP1 KIF3C RPL10A CORO2B DCTN1 TMX4 COX7B EIF1B RPL23A CCDC85B BEX5 MZT2B THSD7A RELN PPP2CA ATP5A1 TERF2IP TPPP PTPN20A NAPA SLC1A2 PDGFRB UCHL1 NDUFB10 CTBP1 SCN1B TUBD1 ATP6V0B PPDPF EPS15 NEUROD2 NCALD MTX3 ANXA7 FKBP1A LSM4 SELT REPS2 TAGLN3 NHP2L1 JAKMIP1 C12ORF49 CSRP2 DMTN LLGL2 LAMP5 TMSB4XP4 NCOA4 SNCA RPS5 ADAM23 TSC22D1 TOX2 NRCAM NDUFB7 CPNE4 TPD52 NRSN2 RASGRF1 MGST3 GPR158 KIAA1045 SYNPR SLC7A8 TBCA SSBP3 PFN2 PGM2L1 RAB40B TENM1 BCAS2 SGCD OPN3 DUSP1 CTNND2 CAMK2G NRN1 LDOC1L SRM MSMO1 TMEM158 SERINC3 TMEM230 FAM149B1 COX8A NDUFB4 CBX6 SMIM13 NDUFA13 MT-ND5 CYCS LIMK1 MDH2 TXN SERPINI1 NHP2 NDUFA2 LAMA2 PSMD8 ATP5I SERPINF1 BAALC ITM2C RPL15 GOT1 PMEPA1 EFR3A NDUFC2 ALDOA MRPL55 RTN4R CEP164P1 CNRIP1 GSK3A AZIN1 PRUNE2 TOLLIP BTBD1 HDLBP BEX2 PNKD GUCY1A3 NDUFV1 OAZ1 FBXW11 NPTX2 VSTM2L EIF1 RAB7A TMEM35 SAP18 OXCT1 ATP5G1 MORF4L2 GDE1 COX7A1 ATP2B2 LDOC1 EDIL3 SPRN ID2 DRAP1 TMEM14A POLR2I ELAVL2 SUMO3 TRMT112 CPLX2 MAP1A ABHD8 UQCRC2 WSB2 HNRNPH2 SDHAF1 BSG NCAM2 NAPB PDP1 USP5 S100A6 LDHB GTF3A RPS26 MT3 PSMD2 LANCL1 RPS2 HMGCS1 UBL5 INSIG1 ISCA1 RFK PPP2R2B VDAC3 NDN CPLX1 CHCHD2 GPX4 SNCG COX7C UBE2V2 SMS UBE2QL1 SNAPC5 PVRL1 SNCB MPP1 RAP1GDS1 CNTNAP5 UBE2N RAB2A PAK1 SPRYD3 PCDH17 ACTR1A SLC6A17 KITLG NFIA PPM1A AP1S1 NEK7 MAP1B GAPDHP33 DNAJC5 COX6B1 NIPA1 DNAJB6 MAGEH1 SRP9 CDC37 GNG2 FGF12 EPHA6 DDAH1 NELL1 SCAMP5 ANO3 GABARAPL2 NELL2 GABRA5 UBC MAPK8IP2 MRFAP1 RRM2B RAP1GAP2 SOD1 PHYHIPL NME1 CALCRL MT-ND1 ARL4C FAM19A2 RPL7 COX7A2L MST1R OLA1 RAPGEF5 RHOA NDUFA12 SSTR1 PTPRN CALB1 NDUFB1 CA11 POMP TRIM36 FLT1 PCMT1 PAM SLC30A3 C9ORF16 KLF2 EFHD2 RANBP1 PFN1 FAM174A RPL18A BSCL2 PSMB3 MTRNR2L6 NDUFA11 NUDT4 ATP6V1G2 MIF PCDHGA5 PCDHGA10 PCDHGA6 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 MT-CO3 MT-CO1 MT-ND4 NECAB1 SNAP25 ENC1 MAP1B RTN4 PPP3CA PRKCB RP11-111M22.2 TBC1D15 CHL1 GRIN1 PGM2L1 STXBP1 GPM6A PRNP NPTN FSCN1 CALM1 SLC22A17 MT-ND3 PPP2R1A ATP2B2 OLFM1 STMN1 SYT1 MT-ND1 MT-ND2 CDC37 PREPL SYN2 DKK3 PRKACB SUB1 APLP1 SYTL2 CHGB DNAJC21 NUAK1 LMO3 HSP90AB1 NHP2 PEX5L LMO4 ATP6V1A OR6D1P SCD5 ASAP1 RPL8 PSAP MTRNR2L12 CLSTN1 OXR1 NUDT4 NRGN NPTX1 CKB THY1 APLP2 MAPRE2 ARPP19 SCN3B CNTN1 NAT8L SERINC1 GHITM TPPP BASP1 ACTG1 PCDHAC1 NUDT21 UCHL1 MT-CYB PKM SV2B VSNL1 MTCH1 ANO3 TPD52 CALM2 MAGEH1 NELL2 TSC22D1 NAPB CLTC MT-CO2 EIF4G2 YWHAG CAP2 MAPK1 PPP2R2C GDI1 MT-ATP6 MAP4 ZFAND5 MRPS7 IDS ZNF385D TPI1 SPCS2 DDAH1 YWHAQ STXBP6 SLC16A11 SLC17A7 MCHR2 FAM84A SNRPN EGR4 SYT4 PAFAH1B2 ATP5B EGFL7 PTK2B CERS6 YIPF1 IGFBP5 ALCAM KLC1 CPE MORF4L1 RNF11 PIK3R1 FAT3 SPARCL1 C18ORF32 GPR26 IMMP1L GAPDH UBA52 CDK5R1 ZMAT2 PSMD12 APP PITHD1 BNIP3 CX3CL1 COX7A2L PCDH19 PRKAR1B NDUFA4 LDB2 ANXA6 RPL12 EGR1 SERPINE2 JUND NDUFA5 PPP3R1 C1ORF95 GNAQ EDIL3 RAB6A C14ORF2 LMBR1 TGOLN2 KIFAP3 SLIT3 COPRS TKT PFN2 ARHGAP35 MPP1 FAM134A YWHAB LZTS1 HEY1 ATP1A1 LAMP5 UBE2QL1 WLS MTRNR2L8 YWHAZ CALM3 CDH8 ATP2A2 SLC7A5 PSMB3 TOMM20 SERPINF1 SCAND1 OR2X1P LMBRD2 NEUROD1 FBXL16 EIF4A2 RRAGA PPP2CB USP5 SNAP91 D4S234E CDK14 PPP1CB PTMA NPTXR NGFRAP1 BSG NEGR1 COX8A COX6B1 FKBP1A ATP6V0B TUBA1A SEPW1 NDUFB2 PDP1 ATP9A MTPN PLD3 SUMO2 ATP5C1 WASL NDFIP1 PHYHIP IPCEF1 PLCB1 RPL37A HK1 SYN1 CAPNS1 NEFM TMSB4X CDK17 CTBP1 ATP2B4 SLC25A11 LYNX1 LDOC1 ZNF365 GRIN2A SLC38A11 CAPZA2 RPL13 EPS15 SYNGR1 SLC30A3 TMEM70 RRM2B NDRG3 CNR1 KCNC2 CAMKK2 PSD3 SULF2 TRIM37 NCAM2 DIRAS1 PRKCE TUSC2 SNX10 AK5 STMN4 MAPK8IP2 VDAC1 SLC24A2 NDFIP2 PSMB5 PTPRN CNTNAP5 BTBD10 GNG2 RAB6B HTR2A CLU AP3S1 ZNF703 GRINA FAM19A2 SYT11 CCDC154 SCN1A REPS2 HCN1 CBX6 BHLHE40 RGS12 CTNNB1 MAPRE3 PEA15 UQCRB YWHAH RAD23B TOLLIP DPYSL2 TUBB4A MAL2 SERPINI1 ARL2BP ATP6AP1 DYNLL1 KCNK1 SPARC C16ORF13 ZBTB18 ETV1 WSB2 FDPSP4 SKP1 ITFG1 GAP43 DPP6 KIF21A NFIA CMAS PCBP1 RPL32 SERINC3 RTN3 OCIAD1 PPP3CB LINC00086 RNASEK-C17ORF49 CFH RP11-20I23.1 MIF BCAS1 SERF2 NSF RP11-219A15.1 ATP6V0C ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 RAB3B MT-ND4 MT-CO1 SNAP25 SYT1 RP11-111M22.2 MT-CO2 CALM2 CHN1 CALM1 CCK RTN4 PRNP C14ORF2 ENC1 USMG5 GPM6A TMSB4X NRGN APP GAPDH NECAB1 HSP90AA1 PRKACB MT-ND3 RTN1 YWHAG GRIN2A PTMA STMN2 NGFRAP1 MT-ND4L ZNF385D COX6C PRKCB MT-ATP6 RAB6B YWHAB MAP1B COX5B GNAQ RTN3 SPARCL1 PPP3CA COX4I1 APLP1 SYN2 SV2B NDUFA13 VAMP2 SLC39A10 ATP2B2 OXR1 PREPL SERINC1 TSPYL1 ZNF365 MT-ND2 TUBA1B GAP43 RPL15 MT-ND1 RGS4 COX7C MT-CYB CAP2 STXBP1 ACTB PJA2 RPL3 CPE ALDOA RPL41 PIK3R1 RPL6 CADM2 C4ORF3 NEFM FTH1 NDFIP2 CDK5R1 EIF4A2 BEX1 MTATP6P1 RP11-219A15.1 PSAP ELAVL2 IMMP1L GRIN1 CALM3 CSDE1 SNCA ARF3 TBC1D15 ATP1A1 ARFGAP2 PIN1 HSP90AB1 NDRG4 KIF1A EPS15 RPS28 SLC22A17 TMSB10 NFIA ENO2 NDUFA5 ENSA PDP1 AP2M1 PAM BASP1 RNF11 PKM SNCB VSNL1 BDNF SCAMP5 COX6B1 MAP1LC3B APLP2 TERF2IP UQCR11 ARPP19 CFL1 MAPRE2 PPP3CB LDB2 OAZ1 WBSCR17 C16ORF13 CLSTN1 SULT4A1 RAPGEF5 ZFAND5 PNMAL1 GNB1 LGALS1 CRIP2 RPL21 SLC24A2 UQCRB ATP5I TUBB2A LMBRD2 TMA7 PSD3 NPTXR SCN3B SYN1 SCG2 NEFL ATP2A2 TUBA1A DNAJC21 MZT1 DKK3 TRIM37 HMP19 GSKIP CLTB MTND1P23 PPP1R7 CLU NDFIP1 ATXN10 DCLK1 MLF2 HMGCS1 PNMA2 YWHAZ MRFAP1 PPP2CB SUB1 LMO4 NELL2 ELAVL4 DYNLL1 TPPP GHITM CHMP4B CX3CL1 NUDT4 ATP6V1F ATP9A IDH3A SYT5 MYEOV2 OCIAD1 MAP2K4 ATP1B1 REEP2 PLCB1 RPL36A GABARAPL1 TPT1 SCOC MAOB HIGD1A UBC BEX4 SLC9A6 PFDN4 D4S234E CAB39 CABP1 MAP1A STMN3 CADM3 PEX5L NAP1L3 KLHDC3 KIFAP3 NARS KIF5A GNG3 SEZ6L2 PHYHIP NAP1L2 CAMK4 RAB40B NNAT AP3S1 YWHAH ITFG1 SUMO2 C19ORF70 GDI1 SERPINI1 BRK1 RPL38 GUCY1B3 AP2S1 TRMT112 EZH2 SLC17A7 GMFB MDH1 C1D SLIT1 SNX10 TAGLN3 MTRNR2L1 DCTN1 ATP5J2 RABAC1 TBCA FKBP1A NUAK1 MAST3 SRP9 LMO3 ASAP1 NPTX1 GTF2H2C_2 RAB3C HS6ST3 SLITRK1 CLTC RAB11A CREG2 CDH13 NEGR1 WASF1 UCHL1 ACTG1 NDUFV1 SYT11 SLC35B1 DPP6 PRDX2 FTL EIF1 ALDOC NPTN MMP24-AS1 SKP1 EFR3A PPP1R9B RAB6A GOT1 KIF21A ATP5B CA11 OR6D1P FGF12 RPL31 PPDPF VDAC1 MARCKS GPX3 TESPA1 RPL11 NDUFB2 AK5 GDA TMEM14A SPOCK1 NDUFA4 HNRNPA1P40 BIRC5 TF RNASEK-C17ORF49 PLEKHD1 PPIA B3GALT2 ERBB4 ATP1A3 LAMA2 FIS1 B3GNT1 PPIH EIF4G2 DMTN INPP5F IQSEC1 FAM84B SYT13 TMEM132D GABRA1 RAB2A C12ORF49 ARPC5L CAPZB WSB2 NDUFB1 JAKMIP1 GRAMD3 MRPL15 ETFB LINC00087 ATP6AP2 PSMC5 ATP5J MRPL55 PCMT1 MIEN1 MYL6B LANCL1 TANC1 NUP37 PDE1A RPL26 UBE2V2 MORF4L2 SLC30A3 C1ORF64 TMEM230 SLC1A3 PTGER3 MTRNR2L8 SYNPR SLC1A2 EIF1AX ZBTB18 BANF1 CTXN1 HDLBP ATP5G1 SLC8A2 NRCAM SEPW1 RP11-20I23.1 SCD5 UBB LIG1 OLA1 NMNAT2 LPPR4 PPP1CB NAPA LDHB ARF5 BRICD5 NELL1 PGD PACSIN1 SYNGR1 IGSF21 TSC22D1 ITM2B CDKN2D FAM131B COL11A1 MTPN TBC1D7 ATP5C1 RAP2A VSTM2L PEBP1 WBP11 TMEM160 POLR3H ANXA6 CCT5 MAGED2 ATP6V1B2 UBL5 GPR158 FAM3C LHFP TRAPPC1 COX7A2L RAB11FIP5 PFN2 CD63 NWD2 ATP6V1E1 IPCEF1 GPR116 RPS2 ATP6V0E2 PRKCG PPA1 STK39 PITPNA AZIN1 UHMK1 HPCA CLSTN2 RCAN3 TMEM117 IDS VCAN ADD2 TMEM120A C10ORF10 CNR1 TMEM130 TMOD2 YAE1D1 BSG MAP7D2 ACAT2 APEH ARF1 SCAND1 OPA1 NAT8L CIAPIN1 LINGO1 SUMO1 CYFIP2 SLC9A1 TMEM70 SYT10 RHOA PSMC1 RAB3A CDK5R2 SDHAF1 MAPRE3 BAI2 CITED2 TM6SF1 DNAJC5 MOBP GNG2 CLDND1 PCDHGA5 MAPK1 BAALC RASGRF1 RPS4X NCALD EGFL7 ADAM23 RPL12 HEY1 ISCA1 NSF SNX17 COX7A2 CAPZA2 NDUFA11 STMN4 GPX4 RPL23A TUBA4A TEX2 CPLX2 PPP2CA BEX2 ZBBX REEP5 PCYT2 TUBB4A CDK14 NDUFA1 PRDM8 MRPL33 GABARAPL2 PCDH17 ATP6V1G1 PEA15 UQCRH TRIM36 PPP3R1 MYO1B FBXW11 NDUFAF3 SARAF ANLN TXN CCDC124 THOC7 PGK1 NCBP2-AS2 NAPB SH3BGRL2 RPS27A YJEFN3 CTNND2 DYNLT3 ATP5E MDH2 SERF2 C19ORF43 EFHC2 COPE KCNAB2 SNAP91 HINT1 PFDN1 ENOPH1 PGRMC1 ACTR10 GOT2 NHP2L1 PGAM1 SIRPA NOP10 NDUFC2 ALCAM ATP5O MTHFS CNRIP1 GRINA CCDC85B TUBD1 PINK1 KCNC2 NRSN2 OST4 MRPS7 RAP1GDS1 TMEM150C PRKAR1B ESYT1 KCNF1 ACLY STMN1 SLC22A3 NGEF LRRIQ1 RPS5 ZBTB20 CORO2B PTPRN PNMAL2 NCEH1 PPP2R2C KLC1 NDUFB10 PRELID1 CADPS2 INA RPS3A RPL35 NDUFS5 TCEB2 SYT17 AP2B1 FAM163B GPR26 SYNJ1 ARHGDIA CYCS IFI6 RPH3A BAD NEUROD2 VIPR2 COX8A SLC6A1 PSMD2 SYNPO FAIM2 COPS8 LCNL1 EID1 HSPA8 CAMKK2 PPARGC1A ATP6V0C UBA1 RBX1 DNAJC6 HDDC2 ARHGDIG OLFM1 PEF1 GUK1 GRPEL1 TCEB1 PTPRN2 C12ORF57 DNM3 CNIH3 CERS6 UQCR10 MT-ND5 SLC38A1 PET100 TPD52 KCNC3 FSCN1 CISD1 VPS35 SOD1 TIMP2 RORB DGUOK CBLN4 TMEM59L RASGRF2 ETS2 YWHAQ LAGE3 ACP1 GPR150 HTR2A RPL39 DYNLRB1 MTRNR2L12 LYNX1 AC244489.1 RPL17-C18ORF32 MTRNR2L6 RPL17 BSCL2 MIF ATP6V1G2 CYB5R3 CFH SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RTN3 GPM6A ATP1B1 NRGN RPS27A MT-CO3 EFR3A MT-CO1 PRNP CHL1 PTMA ARPP19 MT-ND1 PNMAL2 RPL3 ATP2A2 ZFAND5 DPP6 PEBP1 RPL31 NAPA GNG2 TOMM20 MT-ND4 PPP3CA ENC1 TSPYL1 SYT1 CLTB CHN1 PREPL ARFGAP2 TUBA1B NDFIP1 SLC24A2 NPTN MTRNR2L1 RAB6B NEUROD6 CSDE1 MAL2 PKM CCK IPCEF1 AP3S1 PSMC3 SPTBN1 GABARAPL1 YWHAZ TOMM22 GNAQ RP11-195F19.5 SCN1A USP5 ANAPC11 ATP1A3 PRKAR1B OLFM1 NECAB1 VAMP2 CTNNB1 DNER PRKACB CALM2 RAB3B SELT RPS15 ATP5G2 SYTL2 FKBP1A STXBP1 PPP3R1 REEP5 MCHR2 ARL6IP1 SV2B THY1 ANAPC13 CPLX2 SLC38A11 NRN1 PSMC1 CDKN2AIPNL EIF4G2 SCAMP5 STXBP6 UQCR11 USMG5 APLP2 PDP1 PSAP BIRC5 PPP2CA OAT ATP5I ACTB PLCB1 PEG10 SLC35B1 TCEAL5 RPL32 ATP6V1G1 RTN4 MAP2K1 CNTNAP5 ARL8A SERPINE2 AP2S1 ATP5J2 CDK5R1 TGOLN2 RAPGEF5 PHYHIPL GRINA SYNGR1 CDK14 PEA15 SLC7A1 PTK2B RTN1 PJA2 ATP2B2 VSNL1 YWHAQ FXYD7 MT-CO2 HSP90AB1 MLF2 YWHAB LMO4 NBL1 ATP1A1 SNRPN NAPB EIF1AX SNN APLP1 CD59 MTRNR2L6 IDS GTF2H2C_2 DNAJC21 TBC1D15 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 RP11-111M22.2 MT-CO1 RPL31 CALM2 VSNL1 MT-ND2 CHN1 RPL37A ENC1 RPL36A CALM1 SYT1 IDS PPP3CA COX6C ZNF385D SYTL2 APP BEX1 CLU PRKCB NGEF RTN4 RPS26 CCK NRGN GPM6A ARPP19 RTN1 FXYD6 TMA7 NDFIP2 NRCAM RPL13A HNRNPA1P40 PTCHD4 PET100 RPL35 HINT1 OAT PGK1 AK5 TMSB4X SCD5 STMN3 PRKACB NELL2 ATP2A2 FTH1 RPS12 TMEM130 TOMM20 OLFM1 SYT11 NGFRAP1 RPS27A CREG2 MT-ND4 RPL23A TESPA1 COX4I1 COX7C HSP90AB1 TF BIRC5 NR1I3 NDUFS5 KIF21A CLTC PSD3 CERS6 MED10 OR6D1P DPP6 ATP5B RPL7 RPL11 SLC39A10 CNR1 CD99L2 BAI2 SERP2 RPL39 CRIP2 OXR1 ASAP1 TUBA1A PRNP ERH CKB RAB40B MORF4L2 RTN3 PCGF1 ENO2 NPTXR HMGCR KCNAB2 RPL32 NPTX1 PNMA2 PKM UBC FAT3 LGI3 COL24A1 EPHB6 CCDC85B H2AFZ SPCS2 SCAMP5 KLC1 COQ10B RBX1 CALM3 SNRPN YWHAH RNF11 SEZ6L2 PIK3R1 DCLK1 GNAQ SYNJ1 CABP1 TUBB4A MAP1B ATP6V1E1 GRIN2A RAN HOPX PDP1 CYFIP2 MT-CO3 RPL41 MAP1LC3B ACTB FAM19A2 MRPL52 MT-CO2 PHYHIP SLC12A5 SPARCL1 REEP5 RPS15 ALCAM PSAP SERPINE2 SERINC1 SLC35B1 TOMM7 RGS12 NMNAT2 THY1 NCEH1 ZMAT2 PFDN1 MT-ND1 PRKAR1A AZIN1 TRMT112 C2ORF74 SKP1 PEBP1 PGRMC1 ATP1A1 NGRN MTATP6P1 MT-ATP6 NSF ARFGAP2 RP11-219A15.1 SUMO2 POLR2M PDE1C TAGLN3 COL5A3 PIN1 HOMER1 TSPAN7 KIF3C RAB6B C14ORF2 DYNLL1 RHOA PITPNA TMEM160 ATP5O C14ORF132 PSMC5 DDN UBE2V2 SEZ6L TSPYL1 FKBP1A COX7A2L DIRAS2 HMGCS1 OPCML MT-ND3 MDH1 NPTX2 NRF1 GUCY1B3 WASF1 CAMKK2 GRIN1 BEX5 FAM96B ATP5J RELL2 YWHAZ ZCCHC12 LAMP5 RP11-404G16.2 ZNF365 DKK3 PI4KA PJA2 CYBB ATXN10 DYNLRB1 PVRL1 ARF3 AP2M1 CYP1B1 MAPK8IP2 TRAPPC1 SCN3B FAM149A COX6A1 PPP2R2B PCBP1 RHOB RP11-705C15.2 RRM2B ACTR1A HTR2A TERF2IP ATP5G1 PPP3CB ENO1 PREPL PRDX1 VAMP2 RPL10A C1ORF52 LANCL1 KITLG FAIM2 LINC00087 TMSB10 TM2D3 GUK1 SLC38A1 FKBP8 RGS4 SLC25A22 ARL6IP1 PSMC3 PSMB7 UQCR11 NDUFB10 CNTNAP5 PIP4K2A NEFL SHC4 C2ORF80 INPP5F ATP5J2 UCHL1 SPRYD3 NDRG4 KRAS TCEAL5 PCDHGA10 UQCRB CDH6 NNAT PPP2CA MAPK1 NDUFA12 CACNG3 PPIA YWHAG CAMK2D SOD1 ITFG1 GSK3A NAP1L3 NECAB1 OPA1 JAKMIP1 WDR47 MANBAL ALG3 WBSCR17 SPOCK2 SNX3 BNIP3 CDK5R1 APBB1 ITM2C SARAF CADM2 MAP2K1 GUCY1A3 ISCA1 WBP2 RAMP1 MPZL3 ARL6IP5 CPLX1 HSP90AA1 RAB3A ATP1A2 CYCS NHP2L1 ITPR2 ATP6V0B LDOC1 PTPRS TPRG1L SLC9A3R1 RPS28 TMX4 TUBB3 PLCB1 PRDX5 FAM174A ACLY CDH13 SIRPA COX8A ACTG1 ABCG2 C1ORF233 KCNV1 YWHAQ SRM YDJC ATP6AP2 DNAJC5 NAPB LMO4 KLHL5 MSMO1 FGF12 SYN2 RHBDD2 RRAGA PNMAL1 SLC22A17 PTMA ATP5G3 GAPDH SERPINI1 D4S234E ANO3 RAB4A PFN2 RPL13P5 NDFIP1 EID1 HMGB1P8 MPPED1 DPY30 PRKCE ARHGAP35 NEXN PCMT1 FAM3C ARHGDIG C19ORF10 WARS UQCRQ COX5B TUBA1B ACOT7 CHIT1 ATP6AP1 LZTS1 MTRNR2L1 SLC17A7 GPR171 ATP5F1 YJEFN3 EPB41L3 MRAS FTL NDUFA4 WASL EIF4A2 REPS2 PSMD12 LDB2 SGCD ATP5C1 LDHB DNAJA1 NDUFB2 OCIAD1 NUAK1 MAP7D1 RAPGEF5 PINK1 SERPINF1 STXBP6 KCNC2 FAM134A NDUFB8 TUBB4B HSPE1 MAP1LC3A KIAA1045 PAK1 SUMO1 HSPA8 CDK17 APLP2 RSL24D1 CNP BASP1 CA4 VDAC3 VSTM2L ADD2 SERF2 PRKAR1B SRP14 PSMA7 RPL38 RPL3 PDE1A MB21D2 RPL18A AP1S1 TMEM14A NBL1 SCOC KIT PACSIN1 RPL26 ADAM23 MYL6 RAB2A CBLN4 FSCN1 ATP6V1F MFN2 PHB GNG2 MT-ND4L NEFM MTRNR2L6 RPL17 RPL17-C18ORF32 PTGDS MBOAT7 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 2-3 excitatory neuron B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 CALM1 CHN1 MT-CO1 RTN4 MAP1B CLU MT-CO3 RTN1 ARPP19 PPP3CA CCK PRNP GPM6A PSAP RTN3 THY1 CALM2 BASP1 APLP1 NELL2 YWHAH ATP2A2 SLC17A7 VSNL1 TMSB10 NRGN STXBP1 ENC1 MT-CO2 ATP1B1 NDFIP2 C4ORF3 HSP90AA1 CABP1 OLFM1 VAMP2 ATP1A1 CADM2 APP CDK5R1 FAIM2 RGS4 NSF PSD3 DIRAS2 TSC22D1 ALCAM SEPW1 UBE2QL1 HSP90AB1 MT-ND4 PDP1 FTH1 SLC22A17 CARTPT GDI1 ATP1A3 CPE CALM3 PIK3R1 NCEH1 TMSB4X ARF3 RPL35 SERINC3 PREPL MTRNR2L1 TSPYL1 STMN2 NFE2L1 WASF1 KIF21A CA11 LMBRD2 VSTM2L TSPAN7 OXR1 EIF4A2 SLC12A5 GAPDH CKB ATP6AP2 RHEB PKM SCAMP5 SLC24A2 TPD52 CAMK2G TBR1 NAPB ITM2B PRKACB HMP19 GHITM ATP2B2 ZNF385D RAB3B DYNLL1 PGAM1 BEX1 NDUFB2 CREG2 PEBP1 PLD3 YWHAG WBSCR17 NEFL TMX4 CADM3 NAP1L2 ATP5J2 H2AFZ ATP5E ATXN10 TOMM20 HOMER1 DCTN1 NDUFV1 B3GNT1 PCMT1 IDS GRIN1 ATP5B RAB3C MTPN PSMC5 DIRAS1 NPTXR KIF1A UCHL1 CNTN1 EIF1 MTRNR2L12 NDRG4 SPARCL1 SERPINF1 TPI1 TUBB2A SARAF RPS2 DYNC1I1 TMEM59L FTL PGM2L1 CORO2B GOT1 ZBTB18 RAN COX6A1 TUBA1A GUK1 COX4I1 ACTG1 SERINC1 NCALD STMN1 LPPR4 SOD1 FAM3C NAP1L3 AP1S1 CLSTN1 RPL15 PGK1 ALDOA TRIM37 SYNPR VGF NEFM MRFAP1 NCDN MAP2K4 LAMTOR2 GDA ATP6V1C1 DYNLL2 DKK3 TCEAL3 ETS2 SIRPA SPRN PPP2R1A SYNJ1 PNMA2 BRK1 SNCA PRKCG YWHAB GRIN2A ACLY RPL17-C18ORF32 ZMAT2 SUMO2 SYN1 COX8A VPS35 NECAB1 GABRA1 ATP6V1A KCNAB2 MT-ND3 PLCB1 MBP RAB1A HEY1 SERF2 MSMO1 C7ORF50 ATP6V1B2 STMN4 SH3GL2 SKP1 EGR3 ATP6V0E2 PFKP DNAJB6 CAPZB SYT13 PPP2R2B MAPRE2 PRKAR1B ATP2B4 ARL6IP5 AP2B1 ENO2 RPL13 MAL2 NME1 CPNE8 CAMK4 LMO4 ATP6V1G1 UBA52 TKT RAP2A HSPB8 SLC8A2 UQCRC1 SLC39A10 BAALC TUBA1B GPX4 HOPX GLRA3 IQSEC1 PTPN20A PGRMC1 ARL6IP1 SULT4A1 RLIM NDUFB8 SYT5 ZFAND5 DCLK1 C18ORF32 INA PPIA TOMM7 SYN2 SERPINI1 C11ORF31 RPL21 SEMA3C MAST3 TUBB4A JAKMIP1 AP2M1 ACTB RPL8 RRM2B BSG MAP1A NDFIP1 RPL11 SCD5 SLC38A1 DNAJB9 RPS15 SUSD4 SV2B GABARAPL1 UQCR11 VDAC3 REEP5 MT-ND2 NIPA1 SNAP91 CEND1 SYT11 CAB39 TGOLN2 KLHL12 CNR1 ATP6AP1 CAPZA2 MT-ND1 SSBP3 RPL41 NUDT4 NDUFA2 HSPA8 CA10 CFL1 ARMC3 MRPS7 CD99L2 FABP3 VDAC1 PSMC3 DYNLRB1 YWHAQ DPP6 ATP6V0C ARL8B CTBP1 UQCRFS1 CBX6 RANBP1 HINT1 COPRS MT3 GPR6 SPTBN1 FAM134A NMNAT2 NDUFA13 TRAPPC1 EXTL2 GUCY1B3 TCEAL5 SH3BGRL3 DMTN PPP3R1 NDUFA8 SNX10 BAG4 MAGEH1 GPCPD1 RPH3A PSMD8 BNIP3 NDUFB7 RPL37A SQLE ATP5G3 HCN1 RASGRF1 PIN1 PCDH19 DNAH11 PRKCB TPRG1L PI4KA CHRDL1 MANBAL SYNPO RPL23A PAM CTNND2 MRPL33 MYL12B CTSD MAOB RAB6A POLR2L AURKAIP1 RAB11A EDF1 TMEM35 RPS12 ATP5A1 RAPGEF5 TMEM132D CLIP3 CYSTM1 CHCHD2 IDH3A ENOPH1 COX7A2 RP11-20I23.1 FGF12 CYP1B1 VEGFA PPDPF IGFBP5 PIP5K1B JUND CCDC85B SNX3 ITM2C NELL1 CDC37 ATPAF1 C1ORF115 GABARAPL2 TM2D3 WSB2 NRCAM TMEM158 FSCN1 BEX4 TMA7 PEX5L VDAC2 NUAK1 OR2X1P MYRIP LANCL1 NAT8L C14ORF2 NGRN CMAS FAM84A SRP14 LIMK1 WBP2 RGS12 SMAP2 ATP6V1F MFN2 EID1 THOC7 ISCU MGST3 NRN1 SMS NDUFB4 MTCH1 PJA2 RAB37 DGAT2 UBQLN2 UBE2D2 EPHB6 AK5 FXYD7 DPYSL2 OPA1 NCBP2-AS2 PAX8 CX3CL1 SAP18 MZT2B CNGB1 PPP3CB PCSK1N APLP2 IDI1 ARPC5L PAK1 TPT1 COX7B PEA15 PPP2CA YIPF3 SPRYD3 NNAT OPCML CYCS USMG5 SEZ6L COX6B1 NPTN TMEM160 SNRPN NAPA TEX2 RPL32 ACTR10 HSPA4 PELI3 PTPRZ1 FXYD6 FAM131B TMEM155 MAP4 RAB2A MAGED2 PRSS3 CYC1 GNB1 IGSF21 RAP1GAP2 FIGN B3GALT2 C1D NDUFA4 C20ORF24 APBB1 RBX1 SLC30A3 UQCRB EIF1B PTMA GLDN ARHGDIA RPL18A PDE1A RASGRP1 CTNNA2 HPCA KLC1 CD59 KIF3C HN1 JUN PRUNE2 TIGD4 CKLF CDK14 CLTC PPA1 MOBP TCEB1 PPIF ATRN PVRL1 COPS8 MT-ATP6 SLC25A4 KIF5A EIF1AX RNF11 ARF5 CDH8 UROS RPL3 PNKD ATP5G1 OST4 STRAP TPPP RP11-632C17__A.1 SEZ6L2 PNMA1 HMGCS1 NPTX1 LDB2 CRIP2 SCN3B TBCB PSMA7 KIFAP3 GLO1 OAZ1 ADSS COX7C TESPA1 CACNA1H ADAM23 DDAH1 TXN RAB11FIP5 CDK17 CHP1 CDK5R2 RHBDD2 UBE2L6 SYNGR3 ATP9A ANO3 GPR98 RPL10A FILIP1L RAB6B FKBP8 KCNC2 PRKCE GPR56 TCEAL7 FABP5 CNRIP1 RNF181 MPC2 NCAM2 ANXA7 SMIM13 ENSA C12ORF49 C11ORF84 MFSD6 PTPRN SERP2 BEX2 HMGCR STMN3 OLA1 LINGO1 ACOT7 GDE1 TUBD1 HSPA2 SERPINE2 RAB7A NDUFA5 NEGR1 FIS1 SH3RF1 SUMO3 KCNMB4 RPL38 EFR3A C14ORF132 TCEB2 CPLX1 PRDX5 LMO3 NDUFB10 SLIT1 PHYHIP AES SNCB BHLHE40 CAP2 CYFIP2 RAB27B RRAGA FASN FKBP1A CADPS2 CLPTM1 KRT17P6 MAPK1 ATP5I COX5B HS6ST3 DUSP6 TERF2IP KRAS PNMAL2 GRINA MAP2K1 NGEF MRPS21 LGALS1 CHL1 MTRNR2L6 HBA2 TUBB3 FRMPD2 APOLD1 GABARAP NUDT21 RPL7 HBA1 PVALB RNASEK-C17ORF49 BSCL2 CTC-575D19.1 RPL36A ATP6V1G2 MIF PCDHA4 PCDHA9 PCDHAC1 PCDHA10 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MT-CO3 OLFM1 DPYSL2 SNAP25 SERINC3 RORB SYT1 VSNL1 TMEM35 MT-ATP6 CCK THY1 RPL37A STXBP1 SLC24A2 CLSTN1 DKK3 NPTX2 PREPL SCN1A MT-CYB SERINC1 MTRNR2L1 SLC9A6 HSP90AB1 NPTN PPP3CA RGS4 PSMC3 GNG3 CALM2 CALM1 IDS SCN1B NRGN BEX4 CHCHD2 BEX1 KCNH5 LINGO1 CBLN4 ARF3 PCDH19 CCDC183 IPCEF1 TUBB4A NEFM PSMD12 C11ORF31 ATP6V1E1 GPM6A SARAF RTN4 ITFG1 ITM2A PSAP ATXN10 SNCA AZIN1 RTN3 CAMK2G ELAVL2 HOMER1 BSG NECAB1 MT-ND4L SRP9 GTF3A CDK5R1 NPTX1 SERPINI1 ZNF365 GABARAPL2 ALDOC JUND CFL1 ATP6V0B USMG5 GABRA1 TMEM155 TUBA1B ZFAND5 FARSA CHN1 MORF4L1 NAT8L NUDT21 SNCG GUCY1B3 HMGCR LMO3 NUAK1 SLC1A2 TENM1 RHOA MT-ND2 LANCL1 BCAP31 CMAS RPS27A FKBP8 CEND1 FTH1 MORF4L2 DAB2 PPP2R1A LYNX1 PGK1 BAG4 HN1 PID1 SIRPA SLC17A7 SNCB EIF1B NFE2L1 MTCH1 GSKIP PRKACB FAM3C OPA1 VIPR2 UQCRH BASP1 ATP1A1 PPP2R2C CDC42SE2 KCNC3 CYCS SELT FBXL16 UBE2E3 FAM134A VDAC3 CTNNA2 DSTN SLC6A1 FAM19A2 TMSB10 NDUFA4 GABRG1 PPIA COL6A1 SKP1 RAP2C CDH22 RAB3IP PIK3R1 SNAP91 CLTC CD24 TUBA4A SYN2 DCLK1 C6ORF1 STMN2 HPCA TM2D3 SPARCL1 NGFRAP1 COX6C COX5A SPRYD3 KCNF1 CADM3 KLC2 PPDPF FAM43B C19ORF53 ANO3 HOPX DYNLRB1 CHMP4B MAP1A SV2B ACTB RP11-20I23.1 ALDOA MTRNR2L6 TBC1D15 ATP6V0C DNAJC21 HNRNPA1P40 RAB3B ZNF385D SYTL2 ESCO2 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 NAPB PRKCB RPL26 RTN3 FAIM2 IPCEF1 SNAP25 ARL6IP1 DPYSL2 FTH1 PRNP TRIM37 YWHAB OLFM1 RPS26 CABP1 STXBP1 PAM REEP2 PHPT1 C11ORF31 GNAQ ANKRD20A11P PSD3 MAPRE2 KIF1A ZFAND5 COX4I1 LMO4 CALM1 RPL31 RPL37A TSC22D1 ATP5O CALM2 PFDN1 ATP2A2 OPCML SYTL2 GABRA1 NR1I3 NAP1L2 RPL38 PRKAR1B MT-ND3 KCNA2 COX7C CCDC158 MTRNR2L12 TEX40 FOXP2 RPL10A SPOCK1 CACNB1 NARS NRCAM MZT2B YWHAQ ALDOC PREPL MAP1B PLD3 SYNPO RPL23A MT-CYB GPR150 LINC00087 MTCH1 ATP1B1 ARL4C VAMP2 SRP14 RAB6A SHARPIN NDFIP1 EIF4A2 PFN2 CREG2 SRD5A1 SYNPR CACNG3 STX1A COX7A1 SYN2 MT-CO2 PARM1 PMEPA1 C3ORF80 TSPYL1 SNCA EXTL2 FBXW11 COL6A1 ANXA7 SLC8A2 PDP1 SLC12A5 CEND1 SNRPN TKT PDE1A TMEM59L NR4A1 CERS6 TBCB DMTN ARF1 IFT52 CYB5R3 SEZ6 ATP6AP2 CAP2 NDUFV1 NAT8L NGFRAP1 ARF3 PPP1R9B NKIRAS1 TPRG1L TSPAN7 SYT13 DCTN1 ARHGDIA ACTB RPL13 ATP2B2 STMN1 TPPP SCN3B SPARCL1 SLC9A6 NDRG4 NREP HSP90AB1 PRKACB MT-ND2 GUCY1B3 APEX2 KLHDC3 CFH SCOC PCDH17 PLCB1 NUAK1 ATP5G3 IMMP1L NPTX1 INPP5F TCEB2 PCMT1 ZBTB18 RPS2 NCALD SLC24A2 ATP1A1 KCNK1 RNF11 RTN1 ATP6V1G1 NPTXR NEGR1 RAP1GDS1 SLC38A1 ARL8A LMO3 HTR1F ITM2B RPL32 TAGLN3 OR6D1P CSDE1 MTRNR2L8 RSL24D1 CLU TBR1 ATP5I SYT11 KCNC2 SERP2 UCHL1 CLTC CAMKK2 PIK3R1 HMP19 PPP3CA RPS28 MAP2K1 MTX3 BIRC5 UQCRC2 TMEM141 TMSB10 SLC17A7 TLE4 RAPGEF5 PLEKHD1 NSF SERF2 RNASEK-C17ORF49 IDS TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 ATP1B1 CALM2 SYTL2 MT-CO2 MAP1B MT-ND4 TRHDE MT-CO1 TUBA1B SYT1 TBC1D15 CAMK2G FXYD6 CHN1 SLC24A2 RTN4 CALM1 DCLK1 GTF2H2C_2 RPL26 GPM6A GAPDH ATP5J2 OLFM1 DPYSL2 CIAPIN1 YWHAG FAM127A CPE SCN3B SLC25A4 EIF4A2 NPTX1 STMN2 GAP43 PRKCB MT-CO3 HTR2C ARL6IP1 PCP4 RTN3 RP11-111M22.2 NRGN ZNF385D KIF5A RANBP1 CADM2 TCEA2 CDH8 SH3GL2 IDS FSTL5 YWHAZ TPT1 RPL31 KIF1A GDI1 ATP2C2 MAP2K2 MAP4 MT-ND5 PPP3CA ATP6V0E2 EPHB6 MORF4L1 UQCR10 SPHKAP TMEM35 HMP19 NDUFB4 ATP2A2 ABHD8 ENO2 KLC1 DPY19L1 MT-ND3 TSPYL1 BCL11B SARAF SPTBN1 PKM MORF4L2 MT-CYB PLCB1 MYBPHL FAIM2 IPCEF1 COL9A1 PPIA RPL13 ELAVL4 MAPK8IP2 NDFIP2 ARF5 PRKACB PLAUR RAB6B MAP2K1 TPI1 RPL15 TMEM14A BASP1 NUAK1 IMMP1L RSPO4 SULT4A1 PIK3R1 IQSEC1 CAB39 NRCAM PFKP TUBB2A CYP26B1 TMTC1 RPL21 TLE4 TPPP GTF3A ATP6V0C ALDOA RP11-20I23.1 NR1I3 ARFGAP2 PNKD UCHL1 KANK3 SCN1B TSPYL4 PAM GRIN2A NDUFS5 ATP6V1A ATP9A PRNP THY1 CCDC85B SLC1A2 CKB OR6D1P HRK PGM2L1 VAMP2 APLP2 CAMK2D ATP5I SERPINI1 ARL4C SERINC1 PSMC3 NAA38 CLU SMIM13 NECAB1 RPS6 MS4A4A C1ORF115 RPL7 VSNL1 UQCR11 PIP4K2A EIF1AX NPTXR MT-ND2 DDN LMBR1 PGRMC1 TMEM155 TPGS2 NOV ITM2B D4S234E SUMO1 PTPRT TUBA1A MTX3 SEMA3A BRK1 TSPAN7 NEFL GABARAPL1 CALM3 NAP1L3 ESYT1 TMOD2 UBA1 PPP3R1 DLC1 APLP1 RAP1GDS1 GABARAPL2 USMG5 PTGES3 UBA52 MRPL55 FAM89A YWHAH NDUFB5 MTRNR2L1 YBX3 CDK5R2 BSG RNF11 TMEM160 EIF4G2 VWA2 FKBP1A GRM3 DCC RPS2 SEPW1 MT-ND1 PTMA ACOT7 REEP2 OAZ1 NGFRAP1 SLC25A6 OAT CPLX2 ZNF385A CCDC183 PDCD5 RPS28 STX1B ACTB CA11 PAQR9 NGRN ATP5E MAGED1 NDRG4 COX7B CCK RHBDD2 KCNAB2 ECM1 UBB MRAS COPRS NRIP3 CPNE2 PPP2R4 CDC37 SNCB SEZ6L ERBB3 LDB2 MRPL33 UHMK1 TCEB2 NAP1L5 COX8A LAGE3 PDLIM1 PTCHD4 SLC22A17 NAPB BEX1 PAK1 PPP2CA DYNLL2 SLC12A5 RLIM DAB2 ANXA6 C19ORF70 MTRNR2L12 CAMKK2 ATP5C1 PFN1 SLC38A1 DDX3YP1 OPCML UBE2V2 GPR158 MAPRE3 SLC7A5 TERF2IP TUBB3 LRP1B PEBP1 PFKFB4 SLIT3 RPL37A ACTG1 CABP1 WDR78 SCOC C18ORF21 C16ORF93 ITPR2 NDUFB10 CLSTN2 DCAF12L2 NCEH1 SYN2 FXYD7 JUND ETV1 MT-ND4L EPS15 COL11A1 KCNMB4 PEA15 KIF21A VPS35 LYNX1 RAB1A PTPRS NDUFC1 SPARCL1 UBC PPP2CB ATP1A1 AGA RTN1 THOC7 CNTN1 SNCA BCKDHB ONECUT1 BSN PPM1A CLDND2 PRUNE2 OPA1 PCSK1N TRPC3 PDP1 MAGED2 ALCAM OCIAD1 SSBP3 NDUFA5 ATP6AP2 IKBKE PI4KA PRKCG HSP90AB1 SCN2B RPS27A ZCCHC12 KLHL5 CXXC4 YJEFN3 SRP14 CALCRL SIGIRR STX1A MT-ATP6 COX5B ACP1 PPA1 PEG10 SV2B ATP5A1 ZBTB18 LANCL1 PSAP TMSB10 RGS12 EFR3A CREG2 COX7C ITM2C GSTO1 NDUFA4 MDH1 CACNG3 SLC39A10 TENM1 GRINA APP SKP1 CTNND2 HK1 OST4 C12ORF49 MTCH1 SH3RF1 DYNLL1 AKAP12 PPP1CB INPP5F PRKAR1B RPS3A MRPS28 MTRNR2L6 ETFB NDUFA13 C11ORF31 BSCL2 RPL13A IFITM1 IFITM3 TMEM191A RPL17 AC244489.1 RPL17-C18ORF32 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B MT-CO3 SNAP25 DNAJC21 MAP1B SYT1 NREP MT-CO1 TMSB4X GRIN1 CALM1 THY1 MT-ND4 GAPDH MT-CO2 LMO4 RTN3 TSPYL1 SLC6A17 ATP1B1 RP11-111M22.2 LRP1B AES SLC39A10 SLC17A7 PSAP VAMP2 STXBP6 SNCA PKM JUND MT-ND2 OLFM1 HNRNPA1P40 HMGCS1 PRNP AK5 DPYSL2 ATP6V0D1 ACTG1 SYN1 ADAM23 TMEM59L RSL24D1 FKBP1A RPS3A SPTBN1 MT-CYB BASP1 C14ORF132 PREPL BTNL9 RAB2A CADM2 PNKP SNAP91 RTN4 MT-ATP6 RPL26 SEPW1 CALM2 MAP1A PTPRS RHBDD2 CAPZB TSPAN7 COL6A1 TUBB2A GDI1 ITFG1 ARPP19 CTXN1 YWHAZ CHN1 C16ORF13 COX5B STMN2 SPOCK2 ENO2 RPL37A FAIM2 CD99L2 KIF21A UQCRH PGAM1 PSD3 NDUFB10 HDLBP TMEM144 NDUFA4 FTL ATP6V1A RPL38 PGRMC1 PPP3CB SERF2 COL5A3 CDH13 CSDE1 TUBA1B TRIM37 TOMM7 CAMK2G AP2B1 NCAM2 DNAJB6 POLR2L HOMER1 EPS15 PIN1 SEMA4G GUK1 ZBBX ATP2A2 TEX2 GABARAPL2 ZMAT2 TMEM141 RAB3A SCN1A RPS6 RTN1 OXR1 ACTR10 C6ORF1 RPL13A TUBA4A ATRN DHCR24 KIFAP3 EIF1B FAM84A BEX1 PLP1 CLSTN1 PIK3R1 LMO3 DNAJB9 IQSEC1 GFRA2 KCNV1 GMFB TTN NDUFV1 VDAC1 GABRA1 MT-ND1 CLPTM1 ALCAM DYNLL1 COX4I1 HSPB3 PRKCB ATP5J2 FAT3 GABRQ CHGB CRYAB RPS15 RGS4 NDRG4 SLC30A3 SLC12A5 HSPA8 TMEM130 YWHAG TPPP NDUFA11 NDUFB1 NDUFB4 FKBP8 ENC1 COX7A2L CNTNAP5 ZBTB20 CPNE4 NRN1 SERINC3 REEP5 MLLT11 AZIN1 MAPRE3 PDYN ACTB C11ORF31 TRHDE YAF2 SERINC1 STXBP1 GPR133 STMN3 RAB11A H2AFZ PITHD1 PDP1 LPPR4 PCDH8 PTPRN FGF12 HRH3 RAN MFSD6 FTH1 RP11-115A14.1 KCNC2 GPM6A PRDM8 SLC9A6 PTK2B HOPX SUSD4 RPL41 ARL8B NDFIP1 RNF182 APBB1 INSIG1 EPHB6 PEBP1 ASAP2 RPL31 CPE PFKFB4 SMAP2 CYC1 CCK RAP2A TMEM14A SOD1 SCOC RPS10 RCAN2 RELL2 FKBP4 ELMO1 PI4KA GPR171 STX1B SYT13 DCC PTMA BSG C2ORF80 CLSTN2 PPP2CA IDI1 YJEFN3 ARL6IP1 PGK1 MT-ND3 PGM2L1 GPR56 STMN1 MTATP6P1 STPG2 C1ORF115 OLA1 OAT NDUFA1 RNF11 NAA38 CDK5R2 SERPINI1 LDB2 CBX6 PINK1 SYNGR1 CLTC VSNL1 SCN2B SYT11 C1ORF95 ELAVL4 CNTN1 ELAVL2 APP ITM2B NRCAM RABAC1 NDUFC1 DNAJC5 ARHGAP24 RPL8 GUCY1B3 SLC22A17 CYCS ZFAND5 SCN3B NRGN RPS5 SUB1 HSP90AB1 MARCKS RPL6 GRM3 NFE2L1 NECAB1 PRKCE S100A10 CHL1 SARAF KIF5A UQCRQ TSC22D1 SH3GL2 ARL6IP5 UQCRC2 SYT4 CLU VDAC2 BEX2 LRRIQ1 TBCB HK1 PTHLH PTPRVP FAM198B C19ORF53 DCLK1 ETV5 SEC61G UBC RIIAD1 FAM43B PTCHD4 EPB41L3 THYN1 SCAND1 USMG5 AP2M1 TOLLIP GCHFR RPL17-C18ORF32 RNASEK-C17ORF49 PPP3R1 FABP5 IDS NGRN RPL17 NSF RP11-219A15.1 AC244489.1 RPL36A ATP6V1G2 SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MTRNR2L12 MT-CO3 MT-CO1 SNAP25 MT-ND2 MT-ND1 MT-ND3 MT-ATP6 CHN1 MT-ND4 CADM2 MTRNR2L6 MAP1B PTMA MT-CO2 NPTXR RPH3A LMO4 RTN4 NEUROD6 OLFM1 COL6A1 SPOCK1 SYT1 MTATP6P1 RTN1 TSHZ2 MT-CYB PLEKHD1 SNAP91 USMG5 CALM2 GHITM ARL6IP5 PREPL CYC1 IDS ZNF365 TUBB4B RAB3B TSPYL4 ATP6V1F RPL32 RPL7 SNCA PLCXD2 SUMO2 MRPL12 DKK3 TMEM150C CHL1 ATP1A3 ITM2C INPP5F CTBP1 ATP1A1 FASN TMA7 PRKACB B3GALT2 TUBD1 NGFRAP1 ATP2B2 LAMTOR1 PTCHD4 GABRG1 ATP6V0E2 BAG4 SYT5 CAP2 RGS4 ATP5O NPTN KCNAB1 ATP1B1 STOX1 RPL35 RPS12 PGM2L1 TMX4 CREG2 FGF12 ELAVL2 PJA2 CACNA2D2 OPA1 ARPP19 NIPA1 EFR3A OXR1 SV2B CNR1 DYNLL2 HOMER1 RP11-111M22.2 ERH CABP1 SCN1B CLEC2L SCAMP5 ARL8B TSPYL1 OPN3 FAM163B SERPINI1 PCDHA9 APOD KCNK1 EIF4G2 CALM1 OR6D1P ADD2 NPTX1 CADM3 VSNL1 COX6C RAB6B VAMP2 CLTC HTR2A NRGN BASP1 SYTL2 NDUFA1 VGF BEX4 RASL11B ATPAF1 ATP6V1E1 SERINC3 DCLK1 ATP6AP2 SEC61G RTN4R VEGFA CD53 ATP5G1 CHMP5 PRNP FKBP1A SEZ6 C1ORF52 DPP6 WBP2 PSD3 GDI1 CTNND2 EIF4A2 MTRNR2L8 NUAK1 REEP5 ATP9A RPL3 RP11-20I23.1 ATP6V0C ATP6V1G2 LMBR1 PCDHGA6 PCDHGA5 PCDHGA10 HNRNPA1P40 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RP11-111M22.2 SNAP25 IDS PGAM1 CHN1 RAB3B SYTL2 CCK MARCKS MT-CO1 SIRPA PRKCB CALM2 RPL31 SYT1 MANBAL TSPYL4 MAP1B SLC17A7 TOMM20 SCG2 SLC12A5 RORB SERF2 CD63 ATP6V1A PRNP ARPP19 PGRMC1 PPP3CA RPL38 CHL1 SERINC3 NDRG4 TSPYL1 GNAQ TSPAN7 PPP2CB RPL13A NPTX1 GHITM ENO2 PSD3 CRH SARAF KLC1 NDUFB2 SNCA RAB11A BAG4 RPL17 CAPZA2 PKM RPS15 PDP1 SERINC1 SEZ6L2 THY1 PSAP HSP90AA1 MORF4L1 RHOB ARHGAP29 SPARCL1 PPP3R1 TUBD1 RNF11 PRDX3 NTNG2 SCAMP5 NCEH1 CDK5R2 PEPD NRCAM COMMD6 PCSK1 MFSD6 TOMM22 CNTN1 VDAC1 CPE ZFAND5 RPL13 MOBP CCT5 MAGED1 NDUFA5 ACTB RHBDD2 RAP1GDS1 CAMK2G KCNMB4 CLMN RPL32 SLITRK1 CADM3 BASP1 MAP1LC3A SPOCK2 LANCL1 PLD3 POLR2I TPD52 TMEM151A TOX UQCRC2 RFK TMEM120A C6ORF1 PEG10 FAM131B SUB1 PPP3CB FASN ZBTB18 RPS3A TMSB10 NAP1L3 HCN1 LDB2 TCEB2 DNAJB6 TFEC TM2D3 TBCA RPS5 ADD2 EIF4A2 SYN2 MYL6B TCEAL7 BEX4 OCIAD1 ACTG1 TMEM59L RPS6 SOD1 CDHR1 RPL10A COL5A2 ATP2B2 ENC1 GPM6A RPL37A NUAK1 AP2S1 CPLX1 SLIT1 FAIM2 BIRC5 SLC24A2 CLIP3 FAM127A SERPINI1 DNAJC6 PGM2L1 FAM163B RPL26 PTMA RPL15 ATP6AP2 YWHAG NRGN REEP2 ARPC5L SNRPE MTATP6P1 PODXL TMEM35 STMN3 PRKAR1B OLFM1 CPLX2 DPYSL2 NREP SYNGR1 SLC8A2 CTNND2 PFN2 SNRPN SYT4 GDI1 DPP6 PET100 MT-ATP6 HOMER1 CCDC69 LINGO1 RANBP1 MT-ND2 KRAS PEF1 SLC6A17 APP TMEM14A MIR6723 PSMD12 EEF1A2 IQCK CRYM RAP2C SCD5 MT-CO3 STX1A PEX5L BSG BANF1 ATP1B1 DSTN COPS8 FAM219A C1ORF52 OPA1 STXBP1 USMG5 ENO1 TUBA1A CADM2 UBA1 ACTR1A SPP1 EPS15 MED31 SNCB ANO3 CHGB PTPRN MZT1 PJA2 RPS28 YWHAZ DCLK1 NAT8L NPTXR DKK3 WBP2 LMO4 PIK3R1 MSMO1 SCN4B PITHD1 CCDC68 CLIP2 SLC25A5 VAMP2 RAB3IP RAB6B NCBP2-AS2 ARL1 RPS27A TMOD2 IPCEF1 CLTA KLHL5 BAI2 OLA1 CALM1 HEY1 SEPW1 TOMM7 COX7C D4S234E MAPK1 BSCL2 NSF RPS12 AC244489.1 ATP6V1G2 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO3 MT-CO1 MTRNR2L12 MT-ND5 SNAP25 MT-ND4 MT-ND1 MT-ND3 MTRNR2L6 TNNT2 RTN4 TUBA1B CREB5 YWHAG SERINC1 MT-ND2 PJA2 MT-CO2 NECAB1 MYL6 PPP3CA GPM6A LINC01296 SSBP3 PRKACB CLIP3 KIF21A CALM2 PGM2L1 BASP1 KLC1 KIF1A RPL26 SYT1 SULF2 ELAVL2 RANBP1 MAP1B ETS2 ZBTB18 MTRNR2L8 CNTN1 SCN1A NPTN TPT1 BIRC3 BEX4 PEA15 CXXC4 MAPK1 NUTF2 RPL13 IDS TEX2 OPRM1 UBE2N PTMA SARAF NDRG3 OPCML KLF10 FAM127A CFH CNTNAP3 NPTX1 NDUFB7 PPP2R1A RNF11 DNER OPA1 CLTC GUK1 NARS PPP2R2C RTN3 COX7C DIRAS2 NGFRAP1 PDP1 TFEC NPTXR SYN2 GUCY1B3 NEUROD6 AK5 PAFAH1B2 RAP1GDS1 IPCEF1 LPPR4 LRRC69 RPS12 ATP6V1C1 SSTR2 EPHB6 ARFGAP2 RPL7 RPL3 RP11-219A15.1 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L1 MTRNR2L12 MT-CO2 MT-ND1 MT-ND4 MT-CO3 SNAP25 IPCEF1 RP11-111M22.2 MTRNR2L8 MTRNR2L6 MT-ND2 RAB3B SYTL2 ZNF385D PTMA PPP1CB DCLK1 MAP1B NRCAM TUBA1B UCHL1 NEFM ATP6V0B MT-ATP6 SYT1 MT-CYB YWHAG SLC22A17 BIRC5 CFH TBC1D15 SLC39A10 CYP26B1 ACTB KIF21A GRIN1 GSTP1 RPL8 ACTG1 FAM219A INPP5F NRGN APLP1 MT-ND3 OPCML VGF EGFL7 SSBP3 CALM1 CABP1 HMP19 COX4I1 MAPRE2 NDUFB10 RLIM SYN2 MTPN HMGCS1 PSMD2 MTATP6P1 RPL6 ARHGAP29 STMN2 MT-ND4L PIK3R1 TAGLN3 CIAPIN1 RELN RAP2A GABRA1 MPPED1 WDR47 TERF2IP GABRG1 PRNP PPA1 SIRPA SLC38A1 BLVRB CLSTN1 OLFM1 NDUFAF2 PPP3CA RNF11 SLC24A2 RTN1 SPOCK1 TSHZ2 STRAP PCSK1 RHOJ CALM2 CSRP2 ELAVL4 MAP4 GOLIM4 EGR1 SUB1 TMEM144 LAMTOR5 PFN2 LPPR4 RTN3 SLIT1 AHNAK2 NCEH1 FBXO40 STX1A FGF12 ARF1 RELB BEX1 SEPW1 SERINC3 RPS28 GTF2H2C_2 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 RAB3B MT-ND4 PPP3CA MT-ND1 SNAP25 MT-ATP6 CHN1 ZNF385D ANKRD20A11P MTRNR2L12 RAB4A GRIN1 PSAP HSP90AA1 RPL39 MTRNR2L8 MT-CO2 PRNP RP11-111M22.2 PIK3R1 MT-CYB ACTB MT-ND3 RORB CAP2 STXBP1 MT-ND2 TBC1D15 GTF2H2C_2 ARFGAP2 BIRC5 PAM ANO3 TSHZ2 YWHAB PPIH ABHD8 ABHD14A RTN4 NPTN COMMD6 SOD1 YDJC PLD3 SSBP3 ARL1 EPS15 RAB3IP SULF2 ATP6V1C1 SCN1B KLC1 RTN3 MAP4 SNRPN FKBP1B MRFAP1 CALM2 RPL31 NAP1L2 OLFM1 RAP2A SLC38A1 PTGES3 SPOCK1 CAMK2G SULT4A1 MAPK8IP2 DYNC1I1 CADM3 WSB2 RPS27A MAP1B NELL1 PSMC1 GDI1 SCOC KCNA2 SCN1A CPLX2 AHNAK2 FAM131B NFE2L1 GFRA2 MTND1P23 KCNAB3 SV2B ATP2B2 OPCML CHL1 SLC6A17 LMBRD2 SLC17A7 PTPRT PFN2 CEND1 SEZ6 STMN1 TMOD2 SYT1 DPY19L1 SLC39A10 NDUFA12 ARF1 ARL6IP1 HMP19 CALM1 MTCH1 BEX2 DNAJC6 UQCRH ARF3 DPYSL2 NAP1L3 CTBP1 UQCR10 SLC30A3 PRKACB CLTC SLC24A2 UQCRB NPTXR BNIP3 PGM5 AES GABRG1 PTMA ELMO1 REPS2 ARPP19 MTRNR2L1 APP KCNK1 RPS15 WASF1 NCDN BSN MT3 FAIM2 GNAQ TUBA1B PEBP1 RPH3A ACTG1 IDS ELAVL2 PHYHIP HNRNPA1P40 NSF RPL17-C18ORF32 C18ORF32 RPS10 RPL15 NGRN MTRNR2L6 LMBR1 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 SYT1 MTRNR2L12 MT-CO1 SNAP25 CHN1 HSP90AB1 CALM1 MTRNR2L1 RTN1 MT-ND1 NDUFB1 MT-ND4 PGRMC1 KCNMB4 NPTX1 ARL6IP1 SYN2 ADAM23 MCHR2 RPL21 PRNP SPTBN1 FBXW11 GRIN1 SPCS2 COA4 NDFIP1 PRKCB MAPK1 LPPR4 SPARCL1 COBLL1 MT-ND2 PSAP MAP1B RPL37A RPL32 CKB PTCHD4 PCDHA4 PLEKHD1 ARL6IP5 REEP2 RAB3C SYT5 CABP1 RPL13 PPP2R2B MT-ATP6 RPS26 GPR26 TCEAL5 ANXA6 ATP1B1 CNTNAP5 SYN1 ATP6V1G1 DIRAS2 PLCXD3 HCN1 TUBA1A IPCEF1 MRPL47 SYNGR1 GPM6A HTR1F SERINC1 CXXC4 ATP2B2 TMA7 PPP3CB NAP1L2 DUSP6 COL12A1 PPP3CA CLSTN2 ALDH1A1 LAMA4 SCN1A SPRYD3 ACTG1 ATXN10 C14ORF132 SEPW1 RORB POMP PRKAR1B ACTR10 RAB40B PIP4K2A NUAK1 PRDM8 NDUFC2 ATP5J2 PCDHGA5 ATP5A1 GADD45GIP1 SYT4 YWHAH PPIA NGFRAP1 MTCH1 TMEM130 ARPP19 TOMM20 UCHL1 TMSB4X PSMC3 KIFAP3 ATP5B TCEB2 COL22A1 CCK BEX4 MT-ND3 PDCD5 NDFIP2 RPL26 PPARGC1A ATP5E SLC1A2 LINC01296 NELL2 NCAM2 SPOCK1 CTXN1 ENC1 YWHAB EIF1 MAP2K4 IDS OLFM1 GNAQ FKBP1B SCD5 SLC12A5 TOMM7 SLC9A6 FAIM2 NDRG3 BSN EGR3 LMO4 UBA52 SLC22A17 RAB11FIP5 TAGLN3 NRGN QDPR DPP6 NFIA ENO2 PSMC1 ATP6V0B CALM2 ASIC4 GSTO1 CA2 BASP1 RPH3A NAPB CAP2 AKAP12 ATP5C1 MORN2 RPL35 RGS4 CDK5R1 RPL17 KLF10 IQSEC1 GUCY1B3 UBE2N CTC-425K20.1 CPE SPOCK2 SULT4A1 PLCXD2 OR6D1P SLC17A7 CSDE1 KIF21A NREP CREB5 MT-CO3 ARFGAP2 RELN RPS10 NSF C18ORF32 RPL17-C18ORF32 ARF5 RPL13A RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 MAP1B ACTB BASP1 TSPYL1 CADM2 ATP1B1 RTN3 PRNP PREPL RPL11 OLFM1 RTN4 SPARCL1 CALM1 HSP90AA1 ATP6V1B2 ATP2B2 RPL37A PIK3R1 AP2B1 CALM2 FOXP2 STX1B RPL17-C18ORF32 VAMP2 PJA2 TOMM20 PRKACB TSPAN7 IPCEF1 SLC39A10 UBC KIFAP3 ARL6IP1 ZNF365 SYT4 RPS27A SARAF MT-ND1 SYN1 PPP3CA ITFG1 CDK5R1 PFN2 CPLX2 PEX5L NDFIP1 DPYSL2 IDS ESCO2 ACTG1 TOX MGST3 UQCRQ DNER AKR1E2 RPL26 CLIP2 AP2M1 DYNLL2 SEZ6L2 TBR1 PKM NGFRAP1 APP MYRIP SNX10 GAPDH CMAS ARL8B RAP2A GABARAPL1 HSP90AB1 ENO1 NRCAM NAT8L SPTBN1 CLU UQCRB PPP3CB ATP5J SULT4A1 MTRNR2L12 MTRNR2L1 MKX EIF4A2 THOC7 PRUNE2 ENO2 MT-CO2 WBSCR17 PNMAL2 RPL8 YWHAB MTX3 HTR4 SSTR2 ELAVL2 SEC61G CALM3 CTNND2 VSTM2A BAG4 KITLG CDK14 FGF12 AZIN1 DCTN1 YWHAH TPD52 RPL38 KCNMB4 RPS6 APBB1 SGCZ PSD3 NECAB1 B3GNT1 SLC12A5 DRAP1 MORF4L1 TOLLIP PPP1CB CEND1 FAIM2 RASGRP1 VSNL1 CLTA MYL6B FBXL16 PEG10 PVRL1 MDH1 STMN2 NDUFA4 MTRNR2L8 DUSP1 TUBB2A OAT CXXC4 SELT RAB3C MARCKS MAPRE2 PGM2L1 GLIPR1 POMP SLC30A3 NDN PNMAL1 SCAMP5 CHN1 MAST3 ATP9A LRP1B RPS28 RXFP1 TUBA1B RAB7A BAALC CSDE1 MORF4L2 PLCXD3 SLC7A1 PSMA7 PRKCB RNF181 MTPN RAN QDPR PNMA1 TRIM37 CADPS2 SERINC3 ATP6AP2 NDRG4 OPA1 YWHAQ FXYD6 CBX6 PAFAH1B2 XX-CR54.1 MAP7D2 PPP2R1A TMSB10 TMA7 ARPC4 ACTR1A RNF11 FAT3 RP11-111M22.2 FSTL5 LYSMD2 APLP1 NCAM2 D4S234E RAP2C SH3GL2 ENC1 SEPW1 COX7C GUCY1A3 TRAPPC1 TIMP2 SNAP91 PDE1A PELI2 TMEM59L NDUFB4 PDCD5 CAMK2D NGRN RPL13A ARFGAP2 CFH RPL36A RPL6 TUBB GTF2H2C_2 PCDHAC1 PCDHA4 PCDHA10 PCDHA9 ZNF385D SYTL2 RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 MT-CO3 SNAP25 CLSTN1 RAB3B RPL38 SYT1 RPL7 PPP3CA HNRNPA1P40 NR1I3 NDUFA13 PPP2R2C SLC9A6 CRIP2 MT-ATP6 PCDH17 NKIRAS1 STX1A NDRG3 MT-ND4 OCIAD1 HMP19 SCAMP5 RPL21 CNTN1 STXBP1 GABRG1 RP11-111M22.2 NELL2 RPL37A TOMM7 SYN2 TSPAN7 RPS15 HSP90AB1 PAFAH1B2 GRM3 VAMP2 TMEM59L CABP1 KIF1A HTR2A NRGN COX7A2 SLC39A10 NECAB1 GPM6A SERPINE2 BCAT1 NAPB TALDO1 GDI1 TMSB10 PCBP1 GUCY1B3 KIFAP3 CTBP1 PTCHD4 CAP2 MBP KCNA1 RPL10A CITED2 TSPYL1 RPL11 ITM2A NPTN ABHD8 IPCEF1 THY1 EXTL2 ARL6IP1 MFN2 C9ORF16 GABARAPL2 MED10 YWHAQ BCAP31 SH3GL2 CADM3 CAMK2D RPL32 SERINC1 TSC22D1 PLCXD3 RPL39 ATP5G3 YWHAZ TUBD1 MZT2B CREG2 MAP1B FAM163B CTNNA3 GPR26 GHITM STMN2 RPS27A SYT5 CD99L2 OR6D1P PRNP SCN3B RBX1 EFHD2 RPS4X CCK RPS28 MORF4L1 FXYD6 ZBTB18 PINK1 UBL5 MT2A TM2D3 FTH1 PTMA PDP1 MT-ND4L MTG1 CRIM1 CACNG3 BIRC5 LMO4 BSG ARPP19 OAZ1 UCHL1 AZIN1 CDH8 TSPYL4 TERF2IP SV2B HSD17B14 FXYD7 AP2M1 SLC30A3 RPL3 ATP2A2 INPP5F MTATP6P1 FGF12 SYT13 RPL17 RPL41 MT3 ADAM23 PRKCB CAMKK2 CDS1 PSAP CNIH3 NDUFS5 SERF2 ATOX1 HINT1 SLC25A6 PKM TOMM70A NEGR1 BEX1 SLC7A1 AP1S2 RPL13A PSMD12 CALM2 IDS RP11-219A15.1 PGAM1 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B ITM2B GDI1 PPP3CA SELT CCK RTN3 RP11-111M22.2 ZNF385D BIRC5 SYT1 STMN1 TMSB10 ATP1A3 FXYD6 SYT4 SERPINI1 MT-CO1 NAPB BDNF CYFIP2 SYT11 SNAP25 LMO4 NPTXR CKB CLSTN2 SERINC1 CALM2 FAIM2 SARAF CHN1 MT-ND4 IQSEC1 PRNP EIF4G2 SLC39A10 ATP1B1 SLC9A6 TGOLN2 FGF12 TSPAN7 NPTX1 SERINC3 LINGO1 DYNC1I1 VGF MORF4L2 CALM1 PEX5L HSP90AA1 NDUFA4 COL12A1 SLC22A17 NFE2L1 FTH1 MT-CO3 GPM6A NECAB1 ZFAND5 MT-CO2 RNF181 ATP1A1 ATP6V1A TSHZ2 NR1I3 CYB5R3 ESCO2 CNR1 ARL8B PACSIN1 GRIN1 YWHAG NDN ENSA PPP2CA GOLIM4 IPCEF1 PCDHB10 LAP3 NAP1L2 PKM RTN1 ARL6IP1 DYNLT3 TUBA1B RNASEK-C17ORF49 ATP6V1B2 STXBP1 RASGRF1 SCD5 COA4 SPON1 EIF1AX ALCAM TSPO RPL35 ZBTB18 ACTB REPS2 STX1A PCDH17 OR6D1P MFN2 RPS15 CX3CL1 TMSB4X AP2S1 LINC00086 RLIM PIP4K2A NELL2 C11ORF31 MRAS STK24 RPL32 MAP1A PPP1R9B ATP9A HMGCR PRKAR1B APBB1 COX5A LGALS1 MPPED1 CTNNB1 ATP6AP1 CCDC115 HSP90AB1 CADM2 RCAN2 ZBTB39 ATP6V1E2 PPP1CB GRINA CAPZB PLSCR1 ARHGDIG KRAS CREG2 DMTN BEX2 CPE RPL26 ASAP1 PRDX1 MAP1LC3A DPYSL2 CRIM1 TMEM120A MAPRE2 PDZD11 DMKN MAP2K1 RAB11A ATP5E CHL1 MMP24-AS1 GPNMB SCN1B COPRS CADM3 UQCRH PITPNA RPL41 WBP2 EIF5A2 PRKCE VSNL1 NREP PPP2CB STMN3 COL5A2 TOMM7 TMEM14A C2ORF74 H2AFZ TSPYL4 CEND1 TM2D3 GMFB SLIT1 NOV NPTX2 NUAK1 SPOCK1 NDFIP1 SCG2 NGFRAP1 PVRL2 OLA1 KLHL12 GLDN HMGCS1 SCN3B PGK1 NDFIP2 ATP2B2 EDF1 PDE1A ELAVL4 TBR1 DNAJC5 PRDX2 SNCA SYNPO RPS27A ARF3 CCT5 SULT4A1 CLU KIFAP3 CRYM CHMP4B MOBP ATP6V0E2 PREPL SCN2B TERF2IP COA3 NCALD FNDC4 SIRPA TMEM59L PSMC1 CRH MTCH1 HES1 ATG101 COX4I1 RTN4 ATP6V1C1 PSAP EIF4A2 DCLK1 IDS RPL18A NGRN NSF SERF2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-CO2 SYT1 CALM1 SNAP25 TMSB4X MT-ATP6 CALM2 MT-ND2 MAP1B CHN1 MT-ND1 MT-CYB FAIM2 ATP1B1 NECAB1 RTN1 ATP6V1B2 PPP3CA RTN3 BASP1 ACTB SNCA HSP90AB1 CALM3 STMN2 MT-ND3 TUBA1B CDK5R1 MTRNR2L1 PSD3 TMSB10 SEPW1 PPIA YWHAG ATP2B2 YWHAB LMO4 PJA2 CADM2 CFL1 ITM2B FTH1 GAPDH CPE RTN4 KIF1A NRGN PPP2R1A SLC12A5 SULT4A1 PRNP PNMA2 ARL6IP1 YWHAH ENO2 EIF1AX VAMP2 TSC22D1 ATP6AP2 PSAP PTMA NDFIP1 NDRG4 CLSTN1 RAB6B PIK3R1 FAT3 BSN SYTL2 TSPAN7 OLFM1 NAPB PTPRT MTATP6P1 EPHB6 WDR47 APLP2 TRHDE YWHAZ PHYHIP SERPINI1 SLC17A7 GRIN2A UCHL1 RORB OXR1 CDK14 GHITM SPARCL1 RHBDD2 KLC1 TUBB2A PPP2CA CKB GABRA1 ARF3 EIF4A2 SNX10 HSP90AA1 IDS ACTG1 APP GPM6A PDP1 NELL2 AES APLP1 ZFAND5 NEGR1 NDUFV1 PFN2 NEFL MAPRE3 PGAM1 MORF4L1 NSF NGRN MTRNR2L6 MTRNR2L12 SERINC1 TUBB4A MZT2B PRKAR1B INA CDS1 STMN1 PRKACB ASAP1 DNAJB6 CHL1 PREPL FXYD6 ATP2A2 TMEM130 SLC22A17 SYNGR1 TUBB EDF1 JUND HMP19 DPYSL2 TPI1 RPS15 CA11 WBSCR17 THY1 NUDT4 HS6ST3 ATP6V1E1 ANXA7 RPH3A SNCB BCAT1 TOMM20 EDIL3 NHP2L1 DPY19L1 SLC24A2 ATP1A3 NAP1L3 NEUROD6 PRKCB MLLT11 MT-ND5 MDH1 SLIT1 GDI1 OAZ1 TCEAL5 RPL41 CTSD CCDC85B HPRT1 CAMKK2 PPP2CB ATP9A SUMO2 LMO3 RGS4 MAPK1 KIF21A SERINC3 CLU GPR26 NDUFB8 CAMK2D VDAC1 PPP3R1 SNRPN ARFGAP2 ATP6V0C TUBB3 RP11-20I23.1 COX5B SLC25A22 NUDT21 CTNND2 RAB4A RASGRF1 BCAP31 PEG10 ZBTB18 CCK RAPGEF5 C1ORF233 TERF2IP DYNLT3 TUSC2 UQCRH DYNC1I1 RPS27A BAI2 ARPP19 DIRAS1 CHMP4B PACSIN1 CNTNAP5 PCBP1 UBE2N SV2B SLC38A1 ENO1 VSNL1 KCNAB2 PCDH19 AURKAIP1 PRKCE TSPYL1 RP11-219A15.1 RFK GNB1 DNAJA1 DIRAS2 RPS28 PCSK1N VWC2L BNIP3 STXBP1 CLSTN2 ADRA1D RPL11 CABP1 SLC9A6 PRUNE2 COX7C SLC6A17 SYNJ1 KIF5A PLCB1 FAM163B TOMM7 VPS35 KLHDC3 TAGLN3 CNTN1 ENC1 FKBP8 UQCRQ RAB3A NGFRAP1 NCOA4 MARCKSL1 CDK5R2 PLCH1 OCIAD1 TBCA FAM134A INPP5F EPB41L3 AP2B1 AK5 SYN1 PFN1 TUBA1A WBP2 SLC1A2 UBE2E3 UBQLN2 CNIH3 CD63 SKP1 COX17 ETS2 ASPDH ADCYAP1 SYT11 RPL37A SYNPO ARL8A MAP4 LDB2 COX4I1 ATP5B RNF11 DYNLL2 PCSK1 PFDN1 NBL1 PPP1CB HMGCS1 PAFAH1B2 C3ORF80 EIF1 SOD1 MRPS21 ATP6V1G1 ATP1A1 RCAN2 HNRNPH2 AP1S1 ELAVL2 NDUFB11 RABAC1 FAM127A PRDM8 PGK1 CLTC PEA15 NPTN TOLLIP KLF10 OPCML DNAJC5 CSDE1 TSPYL4 DNAJC21 BSCL2 MTND1P23 C4ORF3 MRPL55 ALDOC GPX3 AZIN1 MIEN1 TRMT112 PTK2B RHEB CYSTM1 TESPA1 GNG3 ACP1 UQCRFS1 ATP6V0B MMD NDUFC2 DYNLL1 NRSN2 SUB1 COX6A1 RPL31 SERPINE2 ETFB IDH3A EXTL2 RPL35 COBLL1 NCDN PPP3CB YWHAQ TCEB1 CREG2 SUCLA2 DNM3 CACNG3 ATP6V1G2 NDUFA5 EIF4G2 IDI1 ELAVL4 SCN1B SLC39A10 C19ORF43 HEY1 KCNK1 SPOCK1 OLFM2 NAP1L2 PCMT1 CERS6 CBX6 TUBA4A NDUFA13 RPL13 CA10 AKAP12 SDCBP RAB3C CAP2 CAPNS1 CD24 LYNX1 VDAC2 RHOA ALDOA CHCHD2 MGST3 ETV5 ARF1 GPX1 AP2M1 RPL8 MORF4L2 KCNMB4 BSG NTN4 CCDC68 OPA1 GUK1 LINC00087 RSL24D1 CADM3 LMBR1 PLCXD3 UBC BHLHE40 CPLX2 NCAM2 TOMM34 PEBP1 WASL PITHD1 GPR158 ANXA6 PPM1A ELMO1 BCAS2 PIP4K2A C1ORF115 TRIM37 COX5A TRAPPC1 IGSF21 ENOPH1 APBB1 PSMD2 EPS15 FRMPD2 BCKDHB YJEFN3 TMEM35 SYNGR3 ENSA HCN2 C6ORF1 CHGB CCDC124 AMIGO2 ITFG1 HPCA SYT4 WSB2 NGEF ATP6AP1 SEMA5A SCD5 FBXL16 RLIM RPL38 RASGRP1 KIF3C SYT13 DPY30 HOPX DYNLRB1 NEFM NUAK1 FTL RAB7A CHMP5 GOLIM4 LINC00086 CTBP1 CTU2 SIRPA ARL4C DCLK1 SPHKAP F8 RP11-1016B18.1 PVRL1 CIAPIN1 GSKIP SCN2B MAGED1 COPS7A HIGD1A RANBP1 EGFL7 PITPNA ARL2BP LMBRD2 OAT NEUROD2 SMYD2 TXN SCN4B HTR2A KRAS SUSD4 KCNH5 CLTA MAPRE2 MAPK8IP2 VEGFA ARHGAP35 MAL2 EFHD2 EFR3A TBCB RPL3 SNAP91 RAB6A PCGF1 SMIM13 SYNPR TGOLN2 COTL1 STUB1 LSM4 KCNV1 RAP1GAP2 RNASEK-C17ORF49 TMSB4XP4 CYCS TMEM150C PGD PHB BEX5 UBB HMGCR CAB39 CORT LDOC1L UROD BAD GRIN1 ARL1 KIFAP3 GABRA5 MED10 GRM3 DNAJC6 GAP43 GNAQ RHOB UBE2M SULF1 ARL6IP5 YDJC MTRNR2L8 NDUFA12 OR6D1P ATP5H SCN3B PGM2L1 SNX3 NDUFAF3 UTRN HINT1 BCKDK UBE2V2 CETN2 PTPRN2 TRIB2 MARCKS SSBP3 LGI3 DHCR24 CAPZB ACOT7 STX1A ZNF536 SYN2 ITM2C BEX1 SEZ6L CAPZA2 PLD3 MAP2K1 CYFIP2 RRM2B NDFIP2 DCTN1 STRAP COL6A1 GNG2 MAP1LC3A SELM RPS10 ISCU RP11-195F19.5 FAM84A PCDH8 NTNG1 POLR3H UQCR10 REEP5 NAT8L PSMC5 CDKN2D PHKG1 SLC7A1 TPD52 HK1 SCN1A LDOC1 UBL5 MAST3 MAP1LC3B NDUFB4 DKK3 NRCAM COPS8 SPOCK2 UBA1 SPCS2 NPAS3 SLC39A3 COX6C SLC25A11 GLIPR1 NDRG3 RELL2 SCG2 UBL4A RAB11A DGUOK RPL15 CLIP3 SAMM50 APEH STX1B HSPA8 BRK1 GABARAP RPS12 PSMB3 RPL13A MIF RPL18A AC244489.1 RPL17 RPL17-C18ORF32 PCDHGA5 PCDHGA10 PCDHGA6 PCDHA9 PCDHA4 PCDHAC1 PCDHA10 TBC1D15 PLEKHD1 NR1I3 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO3 RAB3B RP11-111M22.2 PSAP RTN3 CREG2 CHN1 MT-CO1 CALM2 SYT1 MT-ND1 MAP1B DNAJC21 GPM6A NDFIP2 CCK CAP2 ATP1B1 RORB SCN1A NRGN MT-ND4 YWHAB CNTN1 TSPAN7 PREPL OCIAD1 YWHAZ LMO4 CYFIP2 NELL2 ENO2 SERINC3 STMN2 PTMA FXYD6 CTNND2 SIRPA PJA2 CADM2 RPL41 RAB6B OLFM1 OXR1 NPTN PTCHD4 SNCA GNB1 ARPP19 PRNP MTRNR2L1 NPTXR RTN1 ITM2B UQCRH SPARCL1 KLC1 GNAQ RTN4 MT-ND3 TRHDE NAP1L3 EIF4A2 ARF5 REEP5 PHYHIP PCDHA4 FBXW11 COX6B1 ATP6V1B2 PEBP1 BSCL2 PGM2L1 SLC9A6 APP SLC22A17 PPP3CA RPL7 GNG3 ARHGAP35 PLD3 GPR6 TSC22D1 JUND ZCCHC17 SLC17A7 YWHAH SCN3B CLSTN1 ENSA TMSB10 COX7C MAP2K1 RPL10A RHBDD2 RAD23B MT-CO2 NGRN BAG4 SERPINI1 C19ORF70 CPNE8 CALM1 TPI1 DPYSL2 ARL6IP1 AP1S2 GABRA1 SRP14 C19ORF53 RPL13A TUBA1B BSN NDFIP1 MT-ND2 APBB1 ALCAM STXBP1 COX8A CPLX2 CDH24 NDRG4 TLE4 PCMT1 LANCL1 YWHAQ EID1 IDS NEGR1 RBX1 FAT3 PHB NGFRAP1 MAPK1 MTRNR2L6 COL6A1 NDUFB4 SLC30A3 FGF12 GSK3A NSF NUDT4 ARFGAP2 BIRC5 ALDH1A1 RPL37A NFE2L1 B3GNT1 LPPR4 ACSS1 SOD1 PNKD PKM PLCXD3 NRCAM RPS27A ELAVL2 DPY19L1 CDK5R1 GRM3 STMN3 EIF4G2 MTATP6P1 CHP1 AP3S1 SEZ6L C19ORF10 UCHL1 PCBP1 GMFB FAIM2 CPE ACTB OPN3 RABAC1 OR2X1P AZIN1 CAPZA2 NPTX1 FKBP8 IGFBP6 UBC SPRYD3 STX1A LDHB ACLY SH3RF1 EFR3A ATP6AP1 SNAPC5 CORO2B MT-ATP6 KLHDC3 ELMO1 MAST3 RPL11 NCAM2 NR1I3 SEPT4 SARAF ALDOC GADD45GIP1 MYL6B VAMP1 MAGED1 SCOC SYNJ1 ATP2A2 C18ORF21 COA3 MZT1 UROS CBLN1 FJX1 ATP2B2 SH3GL2 NR4A1 MLLT11 SUMO2 NDUFA5 CALM3 SPCS2 TUBA1A KIAA1045 PDP1 CLSTN2 CAMK2D RAB3A DMTN ARL6IP5 YAF2 DSTN KCNA2 PNMAL1 RPS3A MTCH1 NDUFA2 RPS10 TBC1D7 TM2D3 RFK APLP1 EIF1B PSD3 NDN PPARGC1A DDAH1 BEX1 C11ORF31 RPS5 BLOC1S1 ATP6V0B C14ORF2 SKP1 INPP5F TMEM35 SLC39A10 DIRAS2 PINK1 JUN IPCEF1 CBX6 LRMP SYNGR1 CSRP2 EFHD2 BASP1 FNDC4 CD59 PGRMC1 DNAJC5 RP11-195F19.5 KIF3C BCAT1 HMP19 SPRN GAPDH OAZ1 LGALS1 GPX4 RNF11 RPL26 TMX4 COBLL1 TAGLN3 NEFL DUSP2 SNRPN TAC3 BTNL9 ATP5G2 DPP6 ATP1A3 WBP11 SPOCK2 RPL31 SPTBN1 BRK1 RPS15 ENOPH1 PRKACB CRIP2 MARCKS CLTB PRDX5 VDAC1 NCOA4 SNX3 SLC38A1 MTRNR2L12 PRKAR1A GRIN1 IQSEC1 GABARAP NREP VAMP2 ARF1 TXN CADM3 MAP2K4 APLP2 RAN DMKN PITHD1 OPCML NECAB1 FBXL15 C1D LINC01296 ATP6V1E1 DNAJB6 HSP90AA1 PPP2CB REEP2 TSHZ2 BAI2 SHISA8 STMN1 TSPYL1 HINT1 SYN1 FXYD7 TMSB4X ATP6V1A ETS2 CDK14 FIS1 CKB PNMAL2 ALS2CR12 SLIT1 NDUFV1 CHMP5 KCNC2 ATP6V0D1 TEX2 THSD7A PSENEN SCN4B POLR2K GFRA2 RHOB ADD2 BCAP31 FAM134A PPP1R7 SNX10 ATP5E KCNK1 KRAS NDUFB7 GLDN INA KCNC3 DKK3 UQCRB PI4KA CLTA PTPRN ATP6V1G2 MRPL37 KIF5A RPL23A SLC9A1 IFI16 HSP90AB1 RAB27B FLOT2 MRFAP1 VWC2L ATP5B SLC12A5 MORF4L1 SSBP3 SERPINE2 BHLHE40 SUMO1 CABP1 CISD1 EIF1AX GPR98 PGAM1 MORF4L2 PAK1 D4S234E ATP9A RELL2 GABRG1 DYNLL1 CTNNB1 MAP7D1 TCEAL7 PPP3CB CITED2 UQCRC2 MRPL33 NARS PIP4K2A ELAVL4 PEG10 PHPT1 EIF5A2 SLC25A11 SLC8A2 RP11-20I23.1 ALDOA THY1 RNASEK-C17ORF49 ATP6V0C TUBB SYTL2 ZNF385D TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 MT-CO2 MT-ATP6 MT-ND2 MT-ND1 MT-CYB MT-ND3 SNAP25 MTRNR2L1 SYT1 MTRNR2L12 CHN1 MAP1B RAB3B MTATP6P1 CALM1 IDS PRNP IPCEF1 SYTL2 ENC1 RTN1 GNAQ RTN4 TMSB10 LMO4 RP11-111M22.2 NPTX1 TMOD2 DPYSL2 PDP1 GPM6A RTN3 PLCB1 FTH1 PRKCB EIF4A2 PPP3CA MT-ND5 APP NAPB YWHAZ SERINC1 ATP1B1 PSD3 RGS4 MTRNR2L6 MTRNR2L8 SLC24A2 OXR1 KLC1 PSAP AP2M1 CABP1 CPE FAIM2 PEX5L ATP2B2 RPL37A TUBA1B PGM2L1 SPOCK1 ETV1 RPS6 CADM2 PREPL ITM2B STMN2 CAMK2D CFH KCNC2 GRIN1 UHMK1 ENSA PIK3R1 HTR1F TSPAN7 NGFRAP1 CAMK2G NRCAM AK5 OAZ1 SNRPN NUDT4 SCN1A CLSTN1 RORB TOMM20 CALM3 SLC17A7 PEA15 DNAJC6 NDRG4 MT-ND4L SEPW1 COX7C YWHAB BIRC5 NECAB1 SV2B GDI1 SCD5 PSMD12 SCN3B BASP1 DYNLL2 SLC22A17 NDUFA4 DCLK1 HMP19 KIF21A PPIA PRKACB TSC22D1 PRDM8 GUCY1B3 PPP2R4 CEND1 CPLX2 TUBB2A RAB3A ZFAND5 PEBP1 CAP2 STXBP1 CHL1 SERPINI1 DKK3 HSP90AB1 NEUROD2 CLTC OPRM1 RPL12 ELAVL4 RPS3A KIF1A VSNL1 GABRA1 SYN2 NEFL SLC30A3 PJA2 ARL6IP5 FAM3C APLP2 FAM19A1 RAPGEF5 MAP2K4 STMN3 SPOCK2 RAB6B MARCKS ELAVL2 WBSCR17 SPTBN1 ATP6V1C1 WDR47 SSBP3 FAT3 RPL13 HNRNPA1P40 TF NR1I3 YWHAH ATP6V1A MAP7D1 RPL23A SCAMP5 CD63 CHMP5 CDS1 GHITM ARL8B DNAJC5 TLE4 COL11A1 NCALD B3GNT1 CISD1 CFL1 B3GALT2 ARPP19 HK1 PTK2B CLU DCC SLC39A10 PRDX1 TPT1 SCN2B GUCY1A3 SYNJ1 KCNC3 SLC25A22 CTNND2 TRABD2A LDB2 LRP1B CLIP3 SKP1 VAMP2 ASAP1 LANCL1 CDC42SE2 ARF1 PDE1C RPL35 WASF1 SLC9A6 PTPRS ACTR6 TSPYL1 NPTN SYT4 CDH8 MAP7D2 PRKCE SH3BGRL2 UBE2V2 C14ORF2 VPS35 CDK14 HSP90AA1 BEX2 ATP1A3 UBE2QL1 ANXA4 TUBD1 EPB41L3 OPCML PPP2CB ATP2B4 UQCR10 CAMK4 EIF1B PCP4 CHCHD2 PRKAR1A NAT8L KLHDC3 KCNMB4 POLR2I SPARCL1 DMTN NPTXR TLN2 NAP1L3 RPS15 TMEM59L RAN CHMP4B USMG5 SLC12A5 NDRG3 ROBO2 ITFG1 PPP3R1 TERF2IP ZBBX SLC8A2 TCEB2 AP1S1 MPPED1 TCEAL5 RHEB ARL6IP1 CORO2B MORF4L1 GDE1 NDUFA5 KIF3C PPP1CB PPP2R1A SLC38A11 ARHGDIG LYSMD2 MAST3 RPL15 PRDX3 COPG1 MAL2 NEFM SYN1 BEX4 SNX10 SYT11 EPDR1 NUDT21 MGST3 RPL38 MAGED1 PCDH17 NCEH1 TMEM160 RPL13A YWHAG KCNAB2 CRYM ARF3 OLFM1 ATP5E MAP1LC3A ATP5J TKT ELMO1 RNF11 GYG1 STMN1 FXYD6 EFR3A CERS6 ATP5H THY1 GRIN2A RNASEK-C17ORF49 TM2D3 MAPK1 ANXA7 NDUFA1 CD99L2 HIGD1A EIF1AX OAT DIRAS2 GTF2H2C_2 NFIA AC244489.1 RP11-219A15.1 ATP1A1 SYT5 MTND1P23 ALDH5A1 PFKP SOX2 PINK1 LINC01085 GADD45GIP1 PPP3CB GTF2B TP53I11 NDUFB8 DCTN1 BSN PAX7 ID2 CCDC85B ERBB3 COBLL1 CTNNA2 CNTN1 ARL8A IFI35 FKBP4 HS6ST3 PLD3 NDUFB2 CMAS PTMA PHB ANXA6 FGF12 LAMTOR2 NAA38 BTBD10 SNCA AP2S1 MDH1 SIGIRR PTPRT CCDC61 SEZ6L PRUNE2 NCDN CADM3 COX14 CDK5R1 PGRMC1 LPPR4 UCHL1 CCDC69 CADPS2 STX1A ANAPC11 CYCS CSDE1 NDUFB10 NRGN NEXN KCNK2 MRPL52 INCENP FASN ALDOA GRINA MFN2 SIRPA DRAP1 IQCK SUMO2 GORASP2 C18ORF32 DDAH1 C4ORF3 CKB OXCT1 SPON1 FAM189A2 PHYHIP TRIM36 PKM ACTB CHGB COL21A1 KCNF1 KLHL5 SERINC3 MTCH1 SNCB TRIM37 NREP SPDL1 SMIM13 CTNNB1 PPA1 EID1 MYL12B C1S KITLG SPRN C2ORF80 ATP6V1F ALDOC HCN1 ZNF547 CRYZ ENOPH1 RAB3C ATP6AP1 NAPA OPA1 ATP5B GDA PTPRN SARAF CKLF PPP2CA SEZ6L2 PPIH JUND RPL39 ADSS ANO3 TUBA1A ENO2 MORF4L2 DCTN3 C14ORF132 SYNGR1 TUBB4B TCEA2 CDK17 TUSC2 DSTN APLP1 BNIP3 DNAJA1 TMX4 PNMAL1 TPD52 ATP5I CDKN2D ARL2BP HINT1 KCTD12 TOLLIP LMO3 CPLX1 CDH7 NDFIP2 GAP43 ITM2C PARM1 SSTR1 ATP6V0C CCDC115 ATP6V0D1 RABAC1 MZT1 CABYR GRM3 ATP2A2 RXFP1 NUAK1 RAB4A WSB2 PDE1A ACTR10 FBXW11 RPL36A EPS15 PNMAL2 INA CYFIP2 TBR1 PCSK1 DNAJB6 IFI6 OLA1 UBE2M SLIT3 C1ORF233 SLIT1 MYL6 CTBP1 NELL2 TMTC4 HMGB3P3 MRPL55 TENM3 PACSIN1 EFHD2 KIF5A HSPE1 PPP2R2B PAM LHFP PDZK1 GSKIP FLOT2 DNER MAPRE3 COX6C FSCN1 ATP6V0E2 CD59 HOPX PSMB5 HTR2A UQCRC1 MLLT11 MORN2 GABARAP SOX9 CYP26B1 CXXC4 RAP1GDS1 PEG10 KCNAB1 RAB7A HPRT1 NCAM2 CST3 STMND1 SERPINF1 NAP1L2 ATP5C1 COL6A1 NKIRAS1 GNB1 EEF1A2 MRPS7 AHNAK2 TMSB4X PCDHA10 TMEM144 PGK1 RPL31 GRPEL1 NDUFB1 CAMKK2 ACTG1 UQCRB FKBP1A TCEAL2 PID1 COX7A2 HAPLN4 COA3 FAM134A CPNE8 BAG4 EFCAB10 STK24 GLO1 TOMM22 MMP24-AS1 AZIN1 TMA7 PFN2 COX4I1 UBL5 ATG101 CYP2R1 PRDX5 CNIH3 S100A13 SNAP91 BEND5 SPCS2 SH3GL2 UBE2D2 STX1B PGD COPS8 EIF1 SYNPO MAP1A C12ORF49 AP3S1 RAB27B ATP9A FTL TMEM35 STAG3 CRIM1 RTN4R RP11-20I23.1 IQSEC1 COX8A ASCL1 RHOA ATRN NARS IDI1 MTPN BANF1 BCAT1 UROS NPM1P30 PTCHD4 HMGCR SRP9 PRKAR1B TAGLN3 SCOC CNR1 PI4KA AP2B1 NDUFC2 TUBB4A MED10 EGFL7 VDAC1 CITED2 GABARAPL2 SNCG OCIAD1 RPL32 NEGR1 NDUFB4 RPL26 CALM2 BEX1 CLSTN2 SLC38A1 HMGCS1 RPL7 NSF RPL6 RPL41 TUBB3 PSMB3 ATP6V1G2 RPL21 TUBB TBC1D15 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SNAP25 SYTL2 MT-CO1 MTRNR2L12 MT-CO3 ATP2B2 SYT1 PRNP MT-ND1 OLFM1 MT-ND4 RTN3 MDH1 PHYHIP CLTC NAT8L MTRNR2L6 IDS SLC17A7 THY1 ALCAM RP11-111M22.2 PACSIN1 SNCB ATP1A1 PPM1A GABRG1 CCK PDP1 PEBP1 ATP2A2 MT-CYB SAMM50 ATP1B1 MT-ND5 OPCML NREP NPTXR EGR1 PPP3CA ACTB SPARCL1 ATP9A STMN2 NEUROD6 DCLK1 PRKACB PREPL CHN1 FTH1 PJA2 CAPZA2 RTN1 TSHZ2 SLC9A6 VAMP2 YWHAG KLC1 CLU CADM2 OCIAD1 SSBP3 SLIT1 BASP1 PSD3 POMP CFL1 RP11-219A15.1 GRIN1 ZNF385D TF NR1I3 HNRNPA1P40 MAP1B SERPINI1 HK1 WDR47 KIF21A MLLT11 RAP1GDS1 COPS8 SLC2A1 PRKCE MZT1 AP2B1 TSC22D1 ATP6V0E2 YWHAB CPE MT-ATP6 VPS35 DYNLT3 RPL23A LMO4 PNMAL2 RPL41 FAM219A STXBP1 CABP1 RCAN2 COQ10B RAB6B SYN1 SERINC3 PGM2L1 WSB2 NME1 PCDHB10 ATP5F1 EFHD2 SV2B MARCKSL1 C1ORF52 HS6ST2 GOLIM4 FAIM2 HCN1 SPOCK1 SNRPN PPP2R2C ARPP19 MAP1LC3B PCDHA4 WBP11 QDPR CX3CL1 PCDHGA5 MRPL55 UBA52 WASF1 EIF1 MAGED2 NEGR1 ARL4C KCNAB1 C1ORF115 BAI2 HSPA8 SLC24A2 PITHD1 ATP6V1B2 UQCRC1 SCOC PRPH2 SYNJ1 GFRA2 NDRG4 NAP1L3 SNRPE NDUFA5 ENC1 RPS15 COX5A CDH7 RPL35 TNS1 BEX2 RNF11 SH3GL2 SEZ6L2 CTNNA2 CAMKK2 TRAPPC1 MT-CO2 PCSK1N ATP5I PNMA2 RPS27A CALM3 CTNND2 ZNF703 TMEM130 OLFM2 PTGES3 ZBTB18 ARF1 SCN3B SPRTN GLIPR1 SKP1 STMN4 SYT11 NPTX1 GRIN2A PLCB1 ITM2B DYNLRB1 PNMAL1 ARL8A EIF5A2 CALM1 TMA7 COL13A1 MGST3 FBXL16 FAM163B ARL6IP1 ENO2 SLC1A2 CTNNB1 COPG1 BSN LMO3 C1ORF194 RASSF8 NFE2L1 RPS5 MPC2 INPP5F CFL2 BTBD10 ANXA7 RORB TOLLIP OAZ1 STMN3 GDA EPB41L3 MT-ND3 INA GOT1 BEX4 PSMA7 C5ORF63 CAB39 TRMT112 EZH2 ID2 APLP1 ATP6AP2 ATP1B2 TGOLN2 KLHDC3 ZFP36L1 RPL32 PSAP PCDHA9 PRKCB TMEM35 GABRA5 TSPAN7 TPPP PFDN1 GNAQ PPP1R9B SARAF NDUFB2 CLSTN1 CD24 LINGO1 CTSD TAGLN3 PPP3R1 MAPK1 NCDN ADAM23 AURKAIP1 LDHB GADD45B EIF4G2 YWHAQ IPCEF1 B3GALT2 CREG2 SPOCK2 ATP6V1G1 NRGN TMEM147 NHP2L1 BSCL2 NGFRAP1 PFKP RTN4R TUBB4A MTRNR2L8 ARFGAP2 ZNF365 EPHB6 RPL13A ATP6V1G2 TBC1D15 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 SNAP25 MT-CO2 ATP1B1 SYT1 MT-ATP6 CHN1 MAP1B MT-CYB MT-ND3 MT-ND2 CALM1 GDI1 MT-ND1 CALM2 SPARCL1 CKB STMN2 STMN1 RTN1 YWHAH ARL6IP1 PRKACB FAIM2 PKM YWHAZ PPP3CA PIK3R1 ACTB NAPB TOMM20 MTRNR2L1 HSP90AA1 ACTG1 DPYSL2 NUAK1 MTATP6P1 SLC12A5 HSP90AB1 VSNL1 CPE PRNP YWHAG NECAB1 PPIA NRGN TUBA1B SERPINI1 RTN4 RTN3 CTNNB1 ENC1 ZBTB18 SLC30A3 STXBP1 PEBP1 LMO4 SUMO2 VAMP2 DYNLT3 ARPP19 PREPL KLC1 YWHAB OLFM1 APLP2 CADM2 DNAJC6 TUBB2A LMO3 MLLT11 SPOCK1 HMP19 GPM6A EIF1AX IDS TSC22D1 CFL1 CAMK2G GAPDH PJA2 TMSB10 NRCAM PRKAR1A SLC17A7 NDFIP1 SERINC1 SNCB GAP43 TSPYL1 BASP1 TSPAN7 NPTN DCLK1 TMSB4X SNCA IPCEF1 EIF4A2 TBC1D15 B3GNT1 ATP6V0E2 OAZ1 RAB2A RPL21 PCDHA4 CDK5R1 SLC39A10 SULT4A1 SKP1 KIF5A APLP1 SNRPN ATP6V1B2 TPPP CSDE1 TAGLN3 MTPN DYNLL1 TSPYL4 CALM3 CLSTN1 PLD3 FTH1 BNIP3 CREG2 FXYD6 WASF1 ITM2B UBC SYN2 TCEAL2 RAB6B REEP5 GRIN2A CCK EID1 TUBB4A ATP9A ZFAND5 GABARAPL2 CHL1 SYT11 DPP6 PSAP NAP1L2 UBE2V2 FKBP1A KCNF1 PNMA2 RAB3A MTRNR2L6 CAMK2N2 CRIM1 MT-ND5 TMEM130 CAP2 APP MAPK1 ACTR1A PARM1 NMNAT2 CAPZA2 KLHDC3 FAM3C EPS15 RPL31 RAPGEF5 CYCS SPTBN1 TUBA1A JUND RAB3C ARL6IP5 GABARAP AP2M1 PPP2R4 SERINC3 KCNAB2 PRKCB NFE2L1 SPOCK2 INPP5F PRKAR1B PAFAH1B2 CA10 SNX3 AP2B1 PAK1 MTCH1 SLC6A17 STX1B DHCR24 MORF4L2 CEND1 MTRNR2L12 EIF1B NDRG4 CADM3 UCHL1 PGK1 TOLLIP SYN1 RPS15 NPTXR THY1 SLC38A1 CABP1 ATP1A3 HTR2A LMBRD2 VSTM2A PSD3 VPS35 ATP6V1A NBL1 MDH1 MARCKS ETS2 RGS4 MYRIP ELAVL2 PCDH17 KIF1A SUB1 CCDC85B MAP4 SYTL2 RAB3B ALDOA DNAJC21 ARHGAP35 CD59 KIFAP3 NRSN2 RLIM PSMC1 DCC PDP1 FXYD7 ATP2A2 CHMP4B SIRPA TMEM150C ENO2 CA11 UBE2E3 EFHD2 MAPRE3 CDK14 SARAF HSPA4 PTPRN2 OPCML PFN2 BSG OPA1 ETV5 CPLX1 FAM127A PAQR8 MAPRE2 STMN4 PHYHIP ATP6V0C PTPRN SLC8A2 LDB2 GRIN1 ATP6V1E1 CTNND2 CNTN1 NAP1L3 ELMO1 LINGO1 GNAQ SYT4 RP11-20I23.1 MGST3 AES HK1 NUDT4 BEX2 ATP2B2 SLC9A6 HPRT1 CX3CL1 SUMO3 ATP6AP2 CERS6 SLC7A8 MAP2K1 ACOT7 NHP2L1 DNAJB6 VAPB RAP2A SEZ6L2 DUSP6 GNG3 CLDND1 NEUROD6 NDUFS5 CMPK1 CCT5 TOMM70A RNF11 SCN3B RASGRF1 SCG2 STMN3 SNX10 MAP7D2 CLSTN2 ANXA7 AP2S1 ARPC4 NEGR1 RAB11A AP3S1 BSN CTSD ACTR6 FAT3 UQCRH RPL37A PPP2R1A CPNE4 TERF2IP BIRC5 ATP5B TRIB2 MBP RAB5C RPL38 TPD52 SRP14 NGFRAP1 COX7C RPS28 SCN7A ARF3 PTPRS TCEAL5 ZNF365 RRAGA WBP2 PTGES3 EGFL7 COL5A2 RHOB COX5B ATP1A1 DCTN1 GUCY1B3 COX14 TMEM35 FTL NDRG3 SYNPR SH3GL2 KLHL12 ELAVL4 FKBP8 MT-ND4L CDK17 DPY19L1 SLC25A5 PPP1CB CDK5R2 UQCR11 SYNGR1 PTMA PGM2L1 GUK1 ZMAT2 SYT5 TUBA4A NSF TUBB3 NR1I3 SV2B C1ORF233 TMEM160 SLC38A11 CDS1 TSHZ2 REPS2 MAP1A ITFG1 RP11-111M22.2 RPL35 OPN3 RHEB SLC25A6 H2AFZ KCNA2 OLA1 RPL11 ABRACL HMGCS1 VDAC1 EGR1 CAPZB UBE2M GRB14 HS3ST5 C1D BHLHE40 MTND2P28 SERF2 FBXL16 DOCK10 FAM131B MET RPL6 C14ORF2 SYNJ1 MPI TPI1 PRDX5 VGF PPM1A CMAS ENOPH1 OLFM2 UBE2D2 NEFL FUNDC1 ALKBH1 EIF1 NPTX1 ARHGDIA DMTN TRMT112 BAI2 TMEM59L CNRIP1 CDC42SE2 PNMAL2 EIF4G2 GHITM MRAS PCMT1 MIEN1 HEY1 MRPL52 UQCRC2 WDR47 PHLDB2 CAPNS1 COX8A RP11-195F19.5 ADD2 ATOX1 CLTB ITM2C TUBB4B LMBR1 SSBP3 ISG15 CCDC25 GPR6 NDUFB2 FSCN1 SLC35B1 CADPS2 NXPH3 LSM4 SEPW1 PLEKHH2 PPARGC1A PGAM1 PI4KA TBR1 APEH PID1 PRDX2 REEP2 SCOC EDIL3 COX7A1 EXTL2 PSMC5 CHP1 GDE1 FAM84A PTK2B TKT EPDR1 PPP1R9B SYNGR3 ASAP2 MPC2 RAB3IP C1ORF115 PSMD2 TCEAL3 SH3BGRL3 OR6D1P PTPRT MAP2K4 CDKN2D BCAP31 PPP3R1 PITPNA GPR116 RAB7A UBB NDUFB10 SNAP91 MED10 BAD TLE4 MAGED1 ANXA6 PCBP1 FGF12 LYNX1 TM6SF1 WSB2 PAM ATP6V0B NTNG1 SELM LGI3 HS6ST3 GPX4 APBB1 NME1 C3ORF80 PELI3 AHNAK2 SMIM13 CYC1 BCAS2 MZT2B HIGD1A RHOA NAT8L CLIP3 FBXW11 DNER NDUFA1 RHBDD2 SLC22A17 DYNLL2 SLIT1 KCNC3 FASN IDH3A RAB6A CAMKK2 MAST3 WBSCR17 SLC24A2 ARL4C ARHGDIG PITHD1 NEUROD2 C7ORF50 TCEB2 CYFIP2 RCAN2 PDCD5 CCDC115 MBOAT7 CCDC184 OAT MTFP1 NDUFA8 MDH2 THOC7 SRR PLCB1 SCN2B RPL8 CTNNA2 ANXA4 SNN UBL5 MPPED1 LHFP SLC25A22 C1ORF52 GPR68 EIF5A2 PPTC7 CDK5 SDCBP CNTNAP5 RAN UBE2QL1 IGSF21 ZNF503 PSENEN SCN1A OXR1 SYT13 C6ORF1 DSTN GPX1 COL6A1 GDA SEC61G RNF208 COL12A1 GPR26 TRHDE MORF4L1 RAP1GAP2 CNTNAP3 WIF1 SNRNP25 YJEFN3 NSDHL SCD5 BAALC NDFIP2 CPLX2 MARCKSL1 HS6ST2 PRPS1 MAP7D1 NDUFB1 DKK3 ENSA DIRAS1 MTRNR2L8 DYNLRB1 CLEC2L SLC7A5 RORB DYNC1I1 HOMER1 ATP5G3 CRYZ HINT1 MRFAP1 SH3BGRL2 CACNG3 SERPINF1 SLC9A1 TESPA1 SLC25A4 PCDH8 SPRN DNAJA1 KIF3C ARF5 GADD45GIP1 STX1A PSMB7 ID2 CALB1 ATPAF1 BTBD10 ATXN10 ARL2BP NEFM CLU RPL15 PSMD8 PSMD12 PPP2CA RIIAD1 CDH8 RPS5 RPL7 NUDT21 ASAP1 AK5 BEX1 NCOA4 C19ORF70 LINC00086 KCNH5 HMGCR ARF1 PLCH1 PPP2CB CDHR1 CYSTM1 FAM163B FLOT2 CFH KRT17P6 RELN NGRN RPL41 EPHB6 MIF ATP6V1G2 PCDHGA6 PCDHGA10 PCDHGA5 TUBB TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 GNAQ SYT4 HNRNPA1P40 NDUFB2 VAMP2 BEX1 BAI2 ATP5G3 NR1I3 MAPK1 RPS27A TNNT2 TMSB10 TUBB2A RPL21 CNR1 PIK3R1 HSP90AB1 NUTF2 SARAF SLC39A10 BRK1 RP11-111M22.2 CALM2 ATP5B ITM2B ATP2A2 CABP1 TF GRAMD3 EGR3 CD63 AHNAK2 MT-CO3 SALL2 MT-ND5 PTPRN2 SV2B TLN2 EDF1 NGEF PGM2L1 NFIA SLC38A1 ATP6V1A PRDM8 SCN1B FXYD6 MGST3 SYN2 SERPINE2 UQCR10 PHLDB2 NSF EIF4A2 TMSB4X LDHB CAB39 RPS28 RAB3A UCHL1 TSPAN7 PPDPF WBP2 ATP6V0D1 GPM6A PCDHGA6 ATP1A3 LMO4 PCDHGA10 FAM3C CLDND1 CAPZA2 CDH13 SKP1 APP RPS15 COX14 DNAJA1 CLPTM1 LRMP C14ORF132 SLC22A17 CHN1 EGFL7 NDUFB7 OR6D1P FIS1 RAB11A UBC BCKDK NDRG4 PINK1 TUBD1 TTN NDUFA13 MAPK8IP2 MT-CYB PLD3 MAP2K2 RPL35 EIF4G2 NGFRAP1 SH3GL2 PRKCB RPS10 FAIM2 RPL12 MCHR2 SKAP2 RPL10A AP3S1 ANXA7 KIF3C DLD EID1 NPTN GPR26 PGAM1 ACTG1 OAZ1 CKLF DCLK1 NDUFB1 ELMO1 H2AFZ TMEM132D SNX10 DNAJC5 NAPB BASP1 S100A6 GDA SLIT1 EPHB6 SLC7A8 UBA1 LDB2 IPCEF1 BEX4 BLOC1S1 SYT11 RHEB PNMAL2 CTNNB1 MYO10 MPC2 KLHDC3 PTGES3 PTPRN SYT17 NAA38 PNMAL1 RPL41 SMYD2 PBXIP1 COX4I1 SLC30A3 DPYSL2 NEFM COL6A1 TRHDE GAPDH CRYAB STMN2 MORF4L2 RPL37A RPL17-C18ORF32 ALDOA BIRC5 RPL17 IDS AC244489.1 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO3 MT-CO1 SNAP25 CALM1 TSPAN7 MT-CO2 MT-ND2 GPM6A CCK CALM2 YWHAG CKB STXBP1 EIF4A2 CHN1 RTN1 PFN2 SEPW1 MT-ND4 PSD3 DPYSL2 TMSB10 MT-ATP6 RTN3 MTRNR2L1 NDRG4 RPS28 SYN2 TMSB4X STMN1 MAP1B SPARCL1 HSP90AB1 RPL31 KLC1 SYTL2 RPL13 PRKACB ARL6IP1 GDI1 RPL17-C18ORF32 SERINC1 NRCAM PEBP1 PPP3CA LDHB RPL32 TOMM20 PDP1 RPL18A RPS12 SLC22A17 TOLLIP PSAP CNTN1 PCDHA4 PREPL CPE MT-CYB GRIN1 ENO2 ACTB STMN2 FXYD6 HSP90AA1 THY1 ZNF385D ATP1A1 NECAB1 MORF4L1 SLC24A2 SPOCK1 CMAS NELL2 RAB6B TSPYL1 RPL41 SLC17A7 SUB1 WDR47 NPTN IQSEC1 RPL6 GNAQ BEX1 NDUFS5 ITM2B STX1A RPL15 RAB11A SKP1 PRKCB YWHAZ CPLX2 ARHGDIA PRKAR1B RPRM ARPP19 SOD1 KCNAB2 TMEM59L BAALC UCHL1 FKBP8 CLSTN2 PRUNE2 NNAT CLU PSMD8 PPP3CB TSC22D1 CAMKK2 NREP RPL38 CFH TBC1D15 ATP6V0C RP11-20I23.1 NGRN IDS RPL3 CDK5R1 TPT1 SIRPA ATP5O TUBB TCEB1 TAGLN3 MRFAP1 YWHAB GABRA1 ARF1 CFL1 GAP43 MANBAL CADM2 CALM3 TPD52 ATP1A3 VSNL1 PKM LYSMD2 ATP6V0B RPL26 RPL11 PCDH19 RELN BEX5 BTBD10 ATP2A2 SUMO2 NAP1L3 STRAP FTL ATP5E SCN3B DCLK1 ACTG1 WBP2 NEGR1 DPY30 SH3GL2 EIF4G2 NMNAT2 APLP1 CHL1 PJA2 MAL2 NDUFB10 B3GALT2 ATP6V1C1 KIF5A B3GNT1 TUBA1B MTATP6P1 TSPYL4 LAMTOR5 RPH3A DCTN1 TOMM7 NGEF UQCR10 APBB1 SNRPN SLC1A2 YWHAH INSIG1 MT-ND3 SUMO1 USMG5 RNF11 NUDT4 RORB UQCR11 ATP6V1A SCAMP5 OLFM1 PNMA1 CERS6 GUK1 ZFAND5 COX5B PARM1 BAI2 SNCB TMTC1 NFE2L1 PRKCE GNG3 DCC MAP1LC3A FAIM2 PGAM1 POMP COX7A2 NPTX1 NDUFA5 BEX4 LRP1B ALDOA MORF4L2 GABARAPL1 ATP2B2 ENC1 CABP1 RPL21 MTRNR2L6 ARFGAP2 TUBA1A NAPB NUDT21 NDUFA12 PELI3 NDFIP1 DSTN MMP24-AS1 TMEM11 VDAC3 NDUFB8 CTC-575D19.1 THOC7 ATP9A CHMP4B PCP4L1 IGSF21 TMEM130 EIF1AX EFHD2 GUCY1B3 CHMP5 SLC6A17 HSPA8 UBL5 NDUFA4 DNAJC5 VAT1L POLR2I GAPDH ITM2A CTSD NAP1L2 ATP6V1E1 ATP5J UQCRFS1 MZT1 MAPRE3 SNRPE MAST3 SAP18 DDAH1 UQCRH NGFRAP1 APOL6 SNRNP25 PDCD5 RPS15 SLC30A3 ETV1 C1ORF115 DYNLRB1 RCAN2 YAF2 MAP2K1 PTK2B STMN4 APLP2 MRPS28 LL0XNC01-16G2.1 CAMK4 DYNLL2 TMEM160 UTRN HCN1 PEX5L TERF2IP PCDHB4 EPDR1 SSTR2 NDUFA1 ZBTB18 KRAS FAM131B PHF11 TSHZ2 NDFIP2 CYC1 ITFG1 TUBB4A NSF SELT PRDX3 PIK3R1 EHD3 CAMK2G GDA PGK1 UBC LGALS1 SQLE KLF10 NRN1 NEFH COX7A1 ISCA1 UQCRB TUSC2 PPM1A RAB6A MYRIP SLC9A6 CTNND2 FSCN1 SYT13 BASP1 SLC7A1 DYNLL1 PSMB5 FAM96B TMEM120A PPP2CA PRNP RPS6 MPC2 TPI1 CAPNS1 CPLX1 ATP6AP1 NRAS NDUFA13 BSN PTPRN RRAGA PDE1A CDS1 KCNC2 CAPZB MAP7D2 RPL13A HSPE1 FAM127A CLTC SRP14 PLD3 ZNF365 ATP5C1 ATP1B1 TUBB4B MARCKS UBE2QL1 IQCK REEP5 RPS3A RXFP1 CDKN2D SERPINI1 SYNJ1 CX3CL1 PET100 ABHD8 HS3ST2 CCDC85B VAPB VPS35 H2AFZ VAMP2 OXR1 PPIA FTH1 FKBP1A APP JAKMIP1 COX17 FIBP VSTM2A RAB40B PSMC5 SYT4 RPL10A YDJC SYNPO GSK3A RHOB HN1 LPPR4 ATP6V1G1 PHYHIP SNAP91 RAB37 RP11-632C17__A.1 PCDHGA5 PLEKHG1 PACSIN1 ELAVL2 UBB RAB1A CTNNA2 CLIP2 SV2B ENSA CISD1 PPDPF THSD7A ARL6IP5 STMN3 KCNA2 PCMT1 UBE2V2 HMGCR EID1 CADM3 SYN1 NCOA4 ARL8A GLIPR1 PIP4K2A TPRG1L ISCU MRPL15 GABARAPL2 CLTA COX4I1 NEFL FBXL16 KIF21A PPP1CB PEA15 WSB2 PIN1 RTN4 SCN1B MT-ND1 MRPS7 CSDE1 PSMC3 NCDN RPL35 PRKAR1A TCEAL5 ATP6V0D1 EDIL3 TBCA C14ORF2 MZT2B TPPP KLC2 KIF3C PRDX1 DYNC1I1 ANXA6 AK5 IPCEF1 ZMAT2 DIRAS2 RPL8 ENO1 ACTR6 ID2 RAN ARF3 NDUFC1 CNTNAP5 COPS8 DLD GLO1 OCIAD1 UBA52 CLSTN1 SUMO3 GRIN2A AES PAFAH1B2 NAT8L ACTR1A NDRG3 GPR158 KCNH5 CKLF GPX4 NDUFC2 RHEB NCEH1 GHITM LHFP COX6C MLLT11 NME1 WASF1 SLIT1 RBX1 TMEM14A LMO4 MT-ND5 COPRS PSMC1 PLCB1 CAB39 UBE2M PAK1 LMO3 CCDC115 ADAM23 PINK1 SYT17 ZNF174 CA11 SNCA TSPYL5 TUBA4A FBXL15 PCSK1 CREG2 UQCRQ NBL1 RAB3A CAP2 RAP1GAP2 NAA38 PLCXD3 FAM163B GRM8 PNMAL2 GTF3A PGM2L1 C16ORF13 ATP6V1G2 RNASEK-C17ORF49 PSMB3 DLC1 TUBB3 MIF AC244489.1 NR1I3 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SNAP25 MTRNR2L12 MT-CO2 MT-ND1 MTRNR2L1 NECAB1 MT-ND3 MT-ATP6 MAP1B HSP90AA1 MT-CYB SYT1 RPL10A ELAVL4 GPM6A MT-ND2 WBP2 PPP3CA RPL36A ATP1A1 YWHAG STMN3 TBC1D15 DNAJC21 RPL17 RPL17-C18ORF32 MTRNR2L8 WASF1 UBL5 MAL2 CALM1 BSN ATP1B1 PEBP1 APP RTN1 PLEKHG1 DPYSL2 RPL41 PGM2L1 WDR47 ATP2B4 KIF1A COX7C KCNAB1 TRMT112 NDUFA12 UQCRB SLC8A2 SLC38A1 CORO2B MTRNR2L6 SLC9A6 RAP1GDS1 PPP2R1A GRIN1 PCDH19 HOMER1 CDK5 CERS6 RP11-111M22.2 SAMM50 PHPT1 PRUNE2 NCAM2 NIPA1 TMTC1 PGD RHOB NAP1L3 CTSD SRP14 NRN1 ARL8A TBR1 EBF4 RPL31 KCNAB2 CLSTN2 CRIM1 MRPS7 SNRPN PPP3CB MYEOV2 KLC1 PREPL CLSTN1 PACSIN1 RPS28 APLP2 SLC25A22 KLHL5 GRIK3 KIF5A RNF208 NPTX1 FAM19A2 PPP1CB DYNLL1 PTK2B TIMP2 MORF4L1 ELAVL2 PITHD1 SYNJ1 NUAK1 CPE ARL6IP1 MARCKS TMX4 CAMK2D TPGS2 KIF21A BAI2 PRKCB SNN STUB1 UCHL1 PGK1 RPL7 ATP5E SEZ6 GAPDH MAPRE3 OLFM1 UBQLN2 PPP2R4 SLC30A3 KLHDC3 CTNNB1 GAP43 CAMKK2 MTATP6P1 CCK PGAM1 ATP6V1G1 ZNF385D SYTL2 RAB3B EPHB6 IDS NSF OPRM1 TPD52 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 CAMK2D SYT1 EIF4A2 TBC1D15 OXR1 MT-CO3 MT-CO2 RPL36A MT-ATP6 CHN1 BIRC5 TF SSBP3 COX6A1 IDS LMO4 DPP6 HPCA PRKAR1A CPE APP VSNL1 STMN1 PRNP SYN2 ARL6IP1 HOMER1 MAP1B PPP3R1 TESPA1 SAP18 SCD5 HSP90AB1 PJA2 PSAP CALM1 CX3CL1 OAT RTN4 RAB3B SYTL2 KITLG STMN2 VWA1 PHYHIP YWHAZ MTUS1 CERS6 ZFHX4 CPLX2 MAPRE3 ITFG1 CDK5R2 SLC17A7 ANXA7 ARF1 ATP6V1C1 RASGRF1 PTGDS RAB2A CLIP2 SARAF LMO3 CADM3 HS6ST2 LAMTOR5 CTBP1 YWHAB SLC8A2 ATP9A SPATA13 CRKL PEBP1 BAG4 SNAP91 MAP2K2 NPTX1 TRIM37 NR4A1 NRGN RTN3 IPCEF1 PIK3R1 DYNLT3 BOC GSTO1 CABP1 PLIN3 EIF1B ARF3 JUND FSCN1 ACTB SV2B MT-ND2 TPT1 GNAQ PLP1 CYFIP2 TRABD2A AES PCP4 AIF1L VEGFA NECAB1 AC244489.1 CALM2 GAP43 CDS1 REEP2 ZNF536 MT-ND5 TKT CEND1 NELL2 MT-CO1 DNAJC4 ZBTB20 OCIAD1 SNRPN C20ORF24 GLRA3 TGOLN2 NEGR1 SPOCK3 ATP6V1B2 CADM2 DNER TMSB10 NFE2L1 MAP1A GDI1 PDE1A SERPINI1 DYNC1I1 TOMM70A FAT1 CUBN PPP1R9B ASAP1 DOCK10 CLTA RP11-111M22.2 RORB PPM1A PAFAH1B2 TMEM144 NFIA SUMO1 MRPL33 TMEM88B RPL23A YWHAG SCN3B IDI1 ETV5 SLC9A1 GABARAPL1 SYNGR1 PCMT1 NUAK1 UQCRB WDR47 MYL6 PTGES3 UBL5 GLUL LINC01296 ATP6V0B ATP1A1 SEPP1 KLHL5 DAB2 DNAJC6 OLIG1 NRCAM INPP5F MT-ND1 TMTC4 SLC39A10 PHB BASP1 SYN1 QKI ATP11C HTR2A GMFB ST18 PCBP1 PIP4K2A ATP2B4 APLP1 FAM219A PPARGC1A NKX6-2 TRIM59 ATP1A3 ARF5 RP11-20I23.1 NGRN ATP6V0C HNRNPA1P40 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAP1B RAB3B RP11-111M22.2 SNAP25 ZNF385D CHN1 TMSB4X SYT1 CADM2 PLEKHD1 BIRC5 ARFGAP2 PTCHD4 MTRNR2L12 LMO3 MT-CO3 MT-ND1 DCLK1 PRKCB FAT3 TF MT-CO2 SLC35B1 ATP5A1 SLC22A17 IQCK OLFM1 ATP1B1 OXR1 KLC1 TMTC1 PGRMC1 NGEF ANXA7 SERPINI1 CTNND2 CALM1 SPARCL1 FKBP1A CMAS PIN1 NREP PRKACB ELAVL4 NPTX1 RORB DPYSL2 PRNP LAMTOR5 OR6D1P MTRNR2L1 CERS6 EFR3A CDK5R2 GNAQ PNMA1 ARL6IP5 EIF1AX GUK1 SLC38A1 TBCA SRD5A1 CDK14 CYFIP2 PIK3R1 MRPL20 MTX3 SYNJ1 ADAMTS6 SEZ6L LIMK1 CNR1 MTCH1 TUBD1 SLC9A6 DNAJC6 MAPK1 RAB4A NIPA1 GRP ENO2 POLR2J BANF1 KIFAP3 ITM2B PFN1 LMO4 KCNK1 RHEB PFN2 PDE1A GLO1 C1ORF52 GSK3A CAP2 SPTBN1 PPP3CA SCN1A ATRN GAP43 LPPR4 BCAP31 MAP1LC3A MT-CO1 STMN3 RPL13 SLC39A10 JUND CA10 GPR158 ATP1A1 RAB11A EDF1 FAM19A2 AES NAP1L3 CX3CL1 CTNNA2 STMN1P1 COL22A1 TUBB2A PODXL SH3BGRL2 NACC2 PHYHIP SARAF SLC17A6 CLSTN1 LRMP NECAB1 EIF4G2 TSPAN7 MT-ND5 ATP6AP2 SLITRK1 MZT1 CPE FXYD6 MT-ND2 ATP6V1B2 ACTB RPL32 CDK5R1 HSP90AA1 EPHB6 APLP1 OPRM1 C1ORF95 PRDM8 PNMAL1 PLD3 ZMAT2 CALM3 DPF3 SCN3B CDC42SE2 RGS4 ANKRD20A11P SNN PRDX5 PJA2 GPX4 ROBO2 RP5-926E3.1 C6ORF1 LMBRD2 KCNH5 PPP1CB MT-ND3 COX7C NAP1L2 SLC8A2 SNCG FAM3C NBL1 PLCH1 TMA7 TOMM20 RPS10 SNX10 CDH8 PPP2R2C PCMT1 SLC17A7 YWHAB SERF2 GHITM PREPL PLCB1 EFHD2 TUBA1A SRP14 BAALC FKBP8 PEBP1 NDUFA12 PCDH17 STMND1 SNCA PRKAR1A RPS28 ELMO1 SPRYD3 OPCML PLSCR1 ATP5J PSMD8 PRKCE TMOD2 NRCAM RAB3A OLFM2 ABHD8 CD99L2 FSTL5 STAG3 FNDC4 VAMP2 GPM6A SKAP2 SDCBP CDK17 SPOCK1 NGFRAP1 RAB40B SCOC RP11-20I23.1 ATP6V0C IDS MTRNR2L6 GPR98 GTF2H2C_2 SYTL2 TBC1D15 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 CHN1 MT-CO2 MT-ND3 MT-ND4 MT-ATP6 RTN3 SYT1 YWHAG NRGN SNAP25 MT-ND2 MT-CYB VAMP2 TSPAN7 MTATP6P1 PNMA2 NGFRAP1 CALM2 VSNL1 ITM2B TUBA1B CAP2 CPE CALM1 NDRG4 MTRNR2L1 ZNF385D TF KIF21A KLC1 ITFG1 NRCAM PITHD1 PPIA DPYSL2 CLU C11ORF31 UHMK1 NPTXR SULT4A1 MAP4 PRKAR1B FAM19A1 PRNP SMAP2 RTN4 PNMAL2 CPLX1 PRKCB BSN ZFAND5 MTRNR2L12 PACSIN1 MTRNR2L6 RAB27B STXBP1 MAP1B YWHAB LAMTOR1 MT-ND1 ACTB UCHL1 PLCB1 SARAF RAPGEF5 PPP3CB TSPYL1 TMSB4X SYN2 FKBP1A SLC24A2 SERINC1 ENO2 HSP90AA1 HSPA8 CDC42SE2 TBCA ARL6IP1 ATP1A1 PRKACB CTSD PPDPF PTPRT SLC30A3 PEBP1 ESCO2 TMEM130 OR6D1P RHBDD2 TUBB4A GAPDH NPTX1 YWHAH NAPB PARM1 PNMAL1 PPP3CA ELMO1 PREPL LPPR4 PINK1 SYT11 TCEAL5 GDI1 STMN1 BEX5 ATP6V1B2 PEX5L PHLDB2 MTPN CEND1 PCSK1N EFR3A PMEPA1 UQCRH NEUROD6 KIF1A PRDX2 GMFB SNCG NXPH1 APP SYNGR3 IPCEF1 HSP90AB1 SCN1A SERINC3 FAT3 PRKCG TMEM230 RLIM PTK2B SYNJ1 DNER CADM3 PPP1CB EID1 FKBP1B PGM2L1 STX1A NDUFA5 NDUFC2 CALM3 MAP2K4 GUCY1B3 OAZ1 NDUFS5 ARL6IP5 PJA2 NEFL PCDHA10 CFL1 NREP SPOCK1 STMN2 SLC25A6 CADM2 PSMD2 CHL1 FAM127A SUMO2 SLC35B1 MAP7D2 FAM219A RPL31 H2AFZ RPL6 ARF1 NIPA1 DUSP6 VDAC1 SMIM13 ATP1B1 LINC00086 PHYHIPL MZT1 ELAVL4 TALDO1 TCEAL7 C1ORF95 TMEM59L KCNH5 DYNLL1 RAB3C CABP1 RTN1 NDUFA4 GHITM RBX1 AP1S2 WLS YAF2 SYNGR1 RNF152 YWHAZ OLFM1 PPP3R1 USP5 AMIGO2 SLC9A6 SIRPA ZBTB18 COPS8 AKAP12 DNM3 UBE2N IDH3A LINGO1 TRABD2A CDK14 MAPK1 TBCB TMOD2 SNAP91 APLP1 STMN3 COX7C TPI1 FXYD7 RGS4 RPL32 GPM6A BASP1 FAM43B OPN3 TPD52 MRPL55 RP11-195F19.5 ONECUT1 TUBB2A TOMM20 TMSB10 SPARCL1 TUBA1A LMBRD2 HCN2 SERPINI1 STXBP2 UTRN HOMER1 LUZP2 EIF4A2 ETV5 RASGRP1 LDB2 CDKN2D RHEB FAIM2 TCEAL2 STRAP OXR1 FAM163B CLDND1 KLHDC3 PTMA RPL13 INPP5F WASL PPP2R1A DUSP1 RAB31 CAMK2D NECAB1 EPS15 MAGED1 DMTN SUSD4 UBB NCEH1 CLSTN1 PRKAR1A FBXL16 LIMK1 MDH1 RAB5C SEPW1 PSMA7 GUCY1A3 PCDH19 TAGLN3 SNRPN MT-ND5 RAB7A NCALD ADORA1 RHOA SNCA PDE1A ZMAT2 PHYHIP UQCR11 ATP5A1 TERF2IP RAB3B SYTL2 RP11-20I23.1 NSF ATP6V0C TUBB GPR98\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ND3 MT-CYB MT-ND4 MT-ATP6 CALM2 MT-ND1 CHN1 SNAP25 MT-ND2 GPM6A SYT1 MTATP6P1 PPP3CA CALM1 MTRNR2L1 RTN4 TUBA1B PSD3 HSP90AB1 MAP1B ACTB NDRG4 PJA2 ACTG1 VSNL1 LMO4 ENC1 FAIM2 PRNP PREPL ZBTB18 CKB YWHAZ AP2M1 ATP9A SERPINI1 RAB2A GDI1 PKM PTK2B CCK TGOLN2 ENO2 BHLHE40 STXBP1 ARHGDIG NECAB1 PCDH17 SMIM13 SERINC3 UCHL1 MORF4L1 YWHAG COX4I1 OAT GRIN1 PIK3R1 CHMP4B MAPRE2 TAGLN3 SUMO2 RTN3 SLC25A22 PEBP1 JUND CTNND2 ATP6V1B2 RHEB KIF1A CX3CL1 KLC1 RAB6B PPIA SYT4 PRKAR1B MTRNR2L6 GDA STMN3 PGM2L1 RPS28 PNMA2 RPL37A MAP4 SCN3B LINGO1 UBE2V2 CABP1 PHYHIP NREP NDUFA12 IQSEC1 YWHAB STMN2 PRKACB RAB1A NPTN SNCA CDC42SE2 KIF21A RORB SLC24A2 TMSB10 TOLLIP EIF4A2 SLC7A1 UQCRH OXR1 WBSCR17 SERINC1 MLF2 NPTX1 PIN1 SYN1 ELAVL4 GHITM CDK14 TSC22D1 DCLK1 SV2B FTL RNF11 NRGN SLC9A6 CLU NARS CALM3 DYNLL1 PSAP SPOCK2 WASF1 TBC1D15 SPOCK1 DIRAS1 SPARCL1 EIF1AX SNRPN NRCAM NEGR1 DPYSL2 OLFM1 ATP2B2 SLC17A7 HMP19 BASP1 RGS4 ATP1B1 ARF3 OAZ1 ATP2A2 ARL2BP DIRAS2 EPHB6 NCEH1 ZFAND5 ACOT7 NDFIP1 MRAS APLP2 SCD5 OPA1 C14ORF132 ARPP19 VAMP2 SYNPO DMTN FKBP1A CERS6 PPP2R4 IDS HIGD1A ARHGAP29 PPP3CB RPL31 DNAJA1 ANXA7 MAPK8IP2 FAM219A EID1 C1ORF115 TPI1 GNG3 DNAJC5 SNCG PNMAL2 AP1S2 GADD45B BCAT1 BCAP31 MAL2 RAN PRKCE SPTBN1 CNTN1 PFN1 PFN2 DYNLT3 PPP2CA PSMC5 ARL6IP1 NAPB ITM2B NUAK1 AURKAIP1 TMOD2 RAB3A UROS TUBB4A LDOC1 PPP1CB PI4KA C3ORF80 CAB39 NDFIP2 RFK NUDT4 MT-ND4L RBX1 GABRA1 C1QBP CISD1 MAPK1 RAB11A NEUROD6 CDK5R1 FAM127A MFSD2A ATP5B TMEM158 MT-ND5 CCDC169 CADM2 CLIP3 APBB1 FGF12 ONECUT2 SUMO3 NFE2L1 UQCR11 RP11-20I23.1 JAKMIP1 SDCBP BCL6 ANO3 NAT8L APP RTN1 HOMER1 TMX4 RP11-111M22.2 FBXL15 ATP6V1C1 YAE1D1 NGFRAP1 RPL11 IPCEF1 CYSTM1 PRDM1 MAGED2 SERF2 SYNPR GFRA2 ATP6V1F TTC23L ATP2B4 DKK3 MAP1A KCNAB2 CYFIP2 AGA POU3F1 COX7A2 FUNDC1 LDB2 NEFL MZT1 POLR2M EPDR1 FABP3 PRKCB SNN GNAQ CSDE1 CCDC61 CCDC85B ADSS PGAM1 NAP1L2 NAP1L3 CRKL RABAC1 NEUROD1 DUSP1 MAP2K2 FXYD6 SYTL2 LIMK1 SUMO1 ATP6V0E2 YWHAH PTPRS LRRC59 ITM2C MAP1LC3B TPD52 POLR2L TPT1 FKBP4 NTN4 MCHR2 COQ10B SLC1A2 KIFAP3 EFR3A SYN2 TCEA2 NEFM GPATCH4 PPM1A COL5A2 TMEM155 STMN1 CBLN4 BRK1 ALDOC PRDX2 NPPB HS6ST3 BEX1 CREG2 APLP1 SYT5 STX1B SH3BGRL3 COX7B SH3GL2 ASAP1 THY1 PHKG1 HMGCS1 ATP6V0B SYT11 MYL12B GOT2 EIF1B AP2B1 MARCKS PDE1C OR6D1P SCOC TCEB1 VSTM2A HAPLN4 WBP11 NAP1L5 SNAP91 GSTT1 KIF5A SLC39A10 CMPK1 MAST3 PEA15 SSBP3 C1D BSCL2 PFDN1 YIPF3 REEP2 ATP1A3 SYT13 TPPP CAMK2D CRYM ENSA PPP1R7 PLCB1 COX7A2L SKP1 FABP5 HPRT1 MORF4L2 CDK5R2 DSTN PRELID1 SLC25A11 TRHDE CDH8 CDK17 HOPX VPS35 SLC39A3 SCAMP5 TUBB4B TMSB4X SPHKAP DHCR24 CA10 CAP2 SNCB PPP2R1A FKBP8 BEX2 EIF4G2 UBE2M BSG MACROD1 ADCYAP1 ENO1 DNM3 OLFM2 C9ORF16 FSCN1 SELT PSMD12 RSL24D1 C18ORF32 HSP90AA1 CHL1 ADAM23 TLE4 AP3S1 ATP6V0C MZT2B SUCLA2 SULT4A1 SOD1 RASSF8 TRAPPC1 RPL38 STX1A PAK1 MMD C4ORF3 TUBB3 RPL3 GABARAP NSF GPR98 ARF5 RPL13A MIF GTF2H2C_2 RPL21 PCDHA10 PCDHAC1 PCDHA4 PCDHA9 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SYT1 RP11-111M22.2 SNAP25 BIRC5 PPP3CA ZNF385D RPS6 RPS28 GPX4 ISCU OR6D1P PSAP RPS27A RPL32 CFH IDS SCAMP5 RPL6 RPL36A PRKCE STMN2 CALM2 STMN1 NDUFB4 PREPL UQCRQ TMSB10 ARPP19 MAP2K1 EPHB6 SSTR2 CABP1 ARFGAP2 PGM2L1 USMG5 SPOCK2 YAF2 COL24A1 PRKACB NMNAT2 CALM1 DYNLL1 EEF1A2 SPARCL1 UQCRC2 PRNP CYFIP2 UQCRH OCIAD1 SCN3B DIRAS2 CDK14 PHYHIP SARAF HSP90AA1 MT-CO2 RAB6A CCK FTL SCN1A BEX1 MGST3 EIF4A2 ATP6V1B2 KIF5A NREP FAT3 ATP1B1 TRMT112 CAMK2G ERH PRUNE2 RPL41 RTN1 TMTC4 RTN4 CHN1 PRKCB TMA7 ATP2B2 FNDC4 ATP5G3 GABRA1 DPY19L1 KLC2 PPP3R1 PRPS1 KCNH5 CREG2 RPS3A CBX6 SNAP91 DCLK1 ELAVL4 TOMM7 KCNC2 ANAPC11 CADPS2 UBA1 ESCO2 ATP6V0C RP11-20I23.1 BSCL2 RPL17 RPL17-C18ORF32 TUBD1 SNCG RPL7 FAM163B PLSCR1 CLTA CISD1 GLIPR1 HINT1 PIN1 ITFG1 HMGB1P8 BAALC UBB SLC26A10 C14ORF2 SCD5 ENC1 ATP6V1A TCEB2 YWHAG TM6SF1 DPYSL2 SEZ6L2 ELMO1 LL0XNC01-16G2.1 RAN NRGN SERINC1 LDHB NGFRAP1 BEX5 MAP1LC3A RAB37 APLP2 EBF4 CDC37 COX4I1 STMN3 BTBD10 OLA1 MT-ND4 CKB YWHAB PCP4 RPL13 GUCY1A3 KIF1A B3GALT2 PJA2 SNCA EPS15 RPL8 RTN3 CAMKK2 STMN4 C11ORF31 RHOB STX1A APLP1 NAA38 ATP5A1 ITGA11 MT-CO1 SPOCK1 GPM6A ST20 RPL38 VSNL1 GDI1 BASP1 VDAC3 ACP1 FXYD7 DNAJB9 MTG1 TMEM59L LAGE3 YWHAH MTCH1 PKM COL11A1 GLO1 LDOC1 FAM189A2 PNKD PGAM1 PFN2 ACTG1 YWHAZ PTPRS ACTB LRRC39 SAMM50 TMOD2 DYNLL2 RAB2A THY1 FBXL16 UROS RPL11 SEC61G RBX1 TBCA SERPINI1 SLC9A6 RXFP1 NPTX1 STXBP6 MED31 SLC12A5 GPX3 SKP1 INPP5F ATP1A3 CHCHD2 PPP2R4 SUB1 NDUFA13 EIF1 VAMP1 CAP2 NDRG4 PSMD12 SLC7A5 ARPC4 TMEM150C EDF1 TMSB4X BEX2 SV2B CX3CL1 MLLT11 RPL21 RPS12 NDUFB11 CEND1 ATP5G1 CCDC68 MRPS7 MSMO1 PEBP1 NRIP3 RPS26 NDUFB1 NDUFA4L2 RNF208 RPL12 PPIA NDUFA12 PPP2CB CADM2 ALDH5A1 HSP90AB1 CYCS RPS15 CORO2B CD24 FAM84A GUK1 TMEM141 TUBB4A NRCAM BRK1 COX7B RAP1GAP2 KIF25 NEFL RPL18A NAPB AP2M1 KIFAP3 PNMA1 HRK RP11-195F19.5 CNTN6 ZBBX SLC25A4 UTRN CFL2 NUAK1 ENSA EFHD2 PRKAR1A PTPRN2 STUB1 MT-ND2 TRABD2A USP5 TUBA1A MRPL20 RAB6B ETV1 MDH1 PRDM8 HTR2A NECAB1 SNRNP25 MYL6 TSPAN7 COX7C LRP1B FAM134A RNF11 NNAT KCNF1 NDUFB8 ESYT1 ARL2BP APP GRIN2A ATP1A1 ALDOA TENM1 HPCA FIBP SLC25A22 COX8A NRN1 CHI3L1 UBA52 ATP5B PLP1 PRDX1 TPI1 NAP1L5 COX5B DNAJB6 SLC35B1 NR4A1 MAGED2 ITM2B EDIL3 DNAJC6 NGEF TM2D3 MTATP6P1 PTCHD4 SERF2 RPL3 MT-ATP6 ATP6V1E1 AC244489.1 SYTL2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-CYB MT-ND3 MT-ND4 MT-ND2 MT-ATP6 SYT1 CHN1 CALM1 MT-ND1 RTN3 ATP1B1 RTN4 RP11-111M22.2 OLFM1 ARPP19 APP SNAP25 TSPAN7 SPARCL1 ATP1A1 TBC1D15 BIRC5 SYT11 RTN1 DPYSL2 PRKAR1A NRGN PRNP AP2M1 FAIM2 MAP1B CADM2 SARAF CCK NDRG4 SEPW1 RPL41 SERINC3 LMO4 STX1A STMN1 NDFIP1 EIF4A2 PJA2 WASF1 GPX4 CDK5R1 CFH NGFRAP1 TSPYL1 HSP90AA1 CALM3 SYTL2 DYNLL1 VAMP2 RPL21 REEP5 NRCAM ATP5I SPOCK1 RPL13A SYT4 NECAB1 ITM2B RPL3 TMSB4X RPL32 SLC39A10 KIF1A MTRNR2L1 ARL6IP1 TUBA1B LINGO1 ARF3 ZBTB18 TMSB10 BNIP3 TOMM7 PLCB1 IDS TF MORF4L1 TMA7 CALM2 CEND1 ATP5B ETS2 ACTG1 REEP2 UQCRC2 KIF21A KLC1 PPM1A UCHL1 GABARAPL2 GAPDH ATP6V1G1 ENO2 CKB NCDN SERINC1 RORB PFKP SERPINI1 ATP2B2 BAI2 PPP2CB MAPK1 CABP1 PSAP MT-ND5 LDB2 RAB2A TRHDE BSG PCP4 PRUNE2 PHYHIP SLIT1 HMP19 RPS28 UBE2N SKP1 PNMA2 THY1 DNAJC6 YWHAH NAT8L NFE2L1 GOT1 HSP90AB1 OCIAD1 YWHAB MAGED1 SSBP3 CSDE1 HINT1 PSD3 YWHAZ DDN PPP2R2C RPL7 ATP6V0C RP11-20I23.1 HNRNPA1P40 ONECUT2 ZNF365 RPL12 KCNH5 CA11 CFL2 NEGR1 NAP1L2 FIS1 CYCS SERF2 NCEH1 GRINA MAPK8IP2 ANXA7 PDP1 FTH1 DNAJC5 ATP2B4 BCAP31 ATP6V0E2 PRDX3 ATP6V1A PPP3CB PI4KA CNTNAP5 PPP1CB KIF5A YWHAG RGS4 ATP1A3 NUAK1 PGM2L1 GPX3 PLD3 RAB3C CDS1 SLC17A7 HIGD1A CNTN1 STK24 RPL39 SLC30A3 MARCKS BEX1 PRKACB OXR1 CA10 NEFL USMG5 NELL2 RPL38 UQCR10 TMEM14A LAMTOR2 ENC1 RPL17 RPL31 BEX4 PPP2R1A RFC3 UQCRH GRIN2A ATP6AP2 SNAP91 RAB11FIP5 EIF1AX GDI1 RPL26 KCNC2 SCG2 BAD CD63 DEXI ZFAND5 ROBO2 UQCRFS1 NEUROD1 NAPA DYNLL2 FGF12 MTRNR2L12 GABRA1 SLC12A5 BASP1 GAP43 NARS TTN CX3CL1 ARL8B MAGED2 KCNA2 PCDH17 TMEM65 HSPA8 LYNX1 SYNGR1 FAM19A1 GNAQ FAM3C BEX2 CORO2B NDUFA1 CPE RNF11 PFN2 LMO3 PPP3CA RPL6 ACTB SYT13 CDR2L TM2D3 COPS8 MFN2 MPPED1 SNCG RPS10 MTCH1 ATP5E MAP1LC3B RPL13 PRKAR1B SOD1 PTPRS DCLK1 NSF ALDOA NR1I3 MIR6723 RAB4A NEFM EDIL3 CDH13 MANBAL NPTN SCAMP5 TRIB2 DPY30 TMEM150C SLC38A1 IQCK ATP2A2 GRIN1 RAB11A CAMK2D TMEM130 HRH3 SLC25A6 PREPL PNKD NHP2L1 ATP5G2 NDUFB1 GDA STXBP1 DRAP1 POLR2K RASSF8 MPP1 SEMA4G ADAM23 VGF OST4 MYEOV2 PTGDS SLC39A3 STMN4 SNRPN PITPNA TMX4 AES MED10 TOMM70A BCKDK NPTXR EIF1 CREG2 UQCRQ CAMKK2 SUMO3 DIRAS1 DLD TSC22D1 TERF2IP ARL4C CTSD CTNND2 CLPTM1 CDK14 SPDL1 MLLT11 KIAA1045 PACSIN1 SYNGR3 OLA1 SLC35B1 NWD2 MRFAP1 VDAC3 SPTBN1 SULT4A1 CLSTN1 PGAM1 NDFIP2 CLEC2L SIGIRR RNASEK-C17ORF49 NCOA4 NBL1 COMTD1 SPCS2 COX5B FAM43B DNAJB6 ELAVL2 CDH7 NDUFB2 GSKIP SLC38A11 HK1 WBP2 PITHD1 MDH2 LPPR4 FSCN1 BEX5 NRN1 ATP9A CCDC169 BSCL2 OPCML SYN1 ITFG1 HPRT1 BAG4 NREP PSMC1 C6ORF1 NRSN2 TIMP2 RPL35 PCYT2 MDH1 MFSD6 RAB6A PRDX1 CADPS2 PARM1 HDDC2 SRP14 TXN MAP2K4 PPIA PTPRN2 PIK3R1 TSPYL4 MORF4L2 ARF5 TCEB2 NCALD ISCU WDR47 ATP6V1F TMEM151A SCN7A CACNB1 TPGS2 NGEF DPY19L1 ADCYAP1 UBL5 CRYM GABARAP DYNLT3 UQCRB ASAP1 GPR6 GSTP1 NKIRAS1 ATP6V1B2 SOX4 CMAHP PEBP1 GUK1 RBX1 HMGCS1 APLP1 ENSA C19ORF10 KCNC3 PLEKHH2 RPL37A HN1 SCOC MRAS OXCT1 THYN1 TGOLN2 BMP8A GOT2 CHGB ADSS PTMA PKM TALDO1 DPP6 TPI1 RAB3A SCN3B SNN CLSTN2 C14ORF2 MTX3 VAPB SCN1A RASSF3 DNER TMEM258 RP11-195F19.5 UBQLN2 PRDX5 ARPC4 ATP5J2 INPP5F COPE NDUFA5 PLCH1 EPDR1 WSB2 SLC1A2 GPR133 SIRPA CAB39 LAMP5 GABARAPL1 EPHB6 SPHKAP PET100 CLDND1 LDHB SEC61G PNMA1 RHEB BRCA2 TRIM47 ITM2C SERP2 RPS6 RAMP1 CPNE4 C4ORF3 RAB27B PGK1 YJEFN3 SLC24A2 CAPZA2 SDCBP CRIP2 CDC42SE2 IPCEF1 CMPK1 TCEAL7 THSD7A FRMPD2 EIF1B UQCR11 TMEM59L ESYT1 SNCB HSPB1 MAPRE2 FAM134A C12ORF49 YDJC NAPB RPS26 CCDC124 COX7A2 SLC6A17 DYNLRB1 RRAGA GABRG1 PRDX2 GHITM BTBD1 SLC7A5 PRELID1 C1ORF115 SYNJ1 MRPL55 OAZ1 ANO3 ID4 PTPRT EIF4G2 SLC8A2 STX1B D4S234E ARHGDIG FAM174A RANBP1 NIPA1 TUBA4A RHOB GPR26 APEH ATP6V0D1 TOMM20 SLC7A1 RPS5 RPL11 CAMK2G CETN2 GLRA3 RPS2 PNMAL2 GPM6A GNB1 APLP2 RAB3IP CYFIP2 RPL18A DHCR24 MAST3 NDUFB10 RPH3A FAT3 SEZ6 NR4A1 LHFP TMOD2 RPS12 AURKAIP1 NDUFAF2 RAN DCTN1 UBB MAGEL2 UQCRC1 UBE2D2 JUND APBB1 CLIP2 KCNAB2 UBE2V2 TRMT112 STMN3 TMEM132D CAP2 GFRA2 CHL1 SELT CLTA CPLX2 SMYD2 EGFL7 PCBP1 CYB5R3 CLU ARF1 SPOCK2 CAMK2N2 MYL12B NGRN TUBB3 MTRNR2L6 RP11-219A15.1 ARFGAP2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL15 TBC1D15 SYTL2 RPL31 PRKCB SYT1 TMEM130 CXXC4 TMEM59L TPD52 CAPZA2 NPTN UQCRB KCNAB1 KCNA5 RORB BASP1 RTN4 NRN1 SNRPN ERH SYNPO CHL1 SOD1 CBX6 CTNNB1 KIFAP3 MT-ND2 OLFM1 TSPAN7 STX1B VSNL1 RPL32 MT-CO3 SNX10 SLC17A7 PPP3CB SKP1 LAMTOR2 PPP3R1 MAP1A SSBP3 CAPZB CDK5R1 PSD3 ACTB PRNP IFI16 PLCB1 SPOCK1 SLC30A3 RPL35 PTCHD4 EPB41L3 RP11-111M22.2 ATP5I TCEAL2 CADM3 HOPX SERPINI1 TUBA1B RPL13 KLHDC3 CCK NDFIP2 SPTBN1 MAP2K4 CDK5R2 RPL36A NRCAM SEMA3A RPL3 PHYHIPL KCNAB2 CNTNAP5 STMN2 FBXW11 ARPC4 PLOD2 GABRA1 FAM19A2 LMO4 TMSB10 PCSK1 TUBA1A VAMP2 PNMAL1 NMNAT2 PIK3R1 PKM SCN4B KIF3C GUK1 MRPL55 FTL PRKCG UBB NELL2 EIF4A2 ATP1B1 DBNDD1 NPTXR DYNLT3 GAPDH NDRG4 KCNK1 YWHAB ATP1A3 TEX2 BCAS2 PGM2L1 MTRNR2L12 SARAF EFHD2 MT-CO1 MTRNR2L1 CREG2 PREPL FNDC4 RASGRF1 STUB1 PTPRT DEXI CCDC25 SYT11 RPL37A PPP3CA NRGN TMEM35 WSB2 ENO1 MGST3 CYFIP2 MTRNR2L6 IDS ARF5 APLP1 HNRNPA1P40 PLEKHD1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 MT-CO3 MT-ND4 MT-CO2 SYTL2 SNAP25 STXBP1 MT-CYB RTN4 ATP2B2 PREPL RPL41 AES MT-ATP6 CSDE1 TOLLIP ITM2B SLC17A7 MTRNR2L12 MT-ND3 APP SLC24A2 PPP3CA RP11-111M22.2 ZNF385D RPL17 CFH CADPS2 MAP1B MFSD6 PEX5L HPCA ARHGAP35 MTATP6P1 ATP6V1E1 RTN1 MAPK1 MT-ND5 PJA2 ENO2 CHN1 CAP2 CHMP4B PSD3 COL11A1 PSAP PGAM1 GPM6A RPS4X COL12A1 LRP1B IPCEF1 TMSB10 TSHZ2 NDUFB8 SLC9A6 ZBTB18 SERPINI1 SERINC1 ELAVL4 CDK14 EIF4A2 CADM2 GHITM NRCAM PRKCE PDP1 PRNP NR1I3 PGK1 RPL17-C18ORF32 FSTL5 NCALD COPS8 PGD NPTX1 CHEK1 MZT1 HES4 CABP1 SYT4 RPS27A PPP2CB C19ORF43 INPP5F POLR3H TCEB1 MYL6B DCC MT-ND2 COPRS C12ORF57 RAPGEF5 CAMK2D RAB27B SCOC UBQLN2 CREB5 GABRA1 EDIL3 UCHL1 BASP1 TUBA4A YWHAG TEFM KIF1A NELL2 NCOA4 ATP5J RAB1A BAI2 CPE SSBP3 CREG2 DYNC1I1 STMN3 PRKCB SPOCK1 SEC61G LMO4 LMO3 ATP5H ACTB HSP90AA1 DNAJC5 HSP90AB1 CDK5R1 FRMD4B PLP1 RTN3 TMEM258 RAP1GAP2 VSNL1 GFAP DPYSL2 MYO1B CXXC4 IDI1 RPL39 SLC44A3 FAIM2 QDPR NDUFS6 SHC4 FTH1 SYT3 ATP5B EIF1 OCIAD1 NTN4 NAPB ERH ALDOC PLCXD3 WARS CACNB1 SYT5 ABRACL MT-ND1 CAMKK2 RPL32 SLC1A3 RHOB IFT52 KIF5A MAP7D1 NDUFB10 GDE1 SLC39A10 NAT8L ATP6V0D1 AK5 FIGN KCNAB2 CALM2 PIN1 TSC22D1 DPY19L1 TMSB4X ASNA1 ARL8B PPIA PSMB5 ARHGAP29 TMOD2 KCNV1 GRIN1 NRGN B3GALT2 EGR1 SKAP2 NDUFA4L2 TMEM160 ATP5C1 RNF208 TSPAN7 UQCRB BSCL2 SLC17A6 SLC7A8 FABP5 NDUFB11 NAP1L5 SARAF SELT TSPYL1 ATP1B1 TBR1 APLP2 MED31 FAM219A ARL6IP1 CFL1 C2ORF47 TUBB2A CALM1 MORF4L2 NHP2 PCDHA4 ENSA SCG2 UBE2E3 ITFG1 RXFP1 ATP6V0B KLHDC3 PPP2R2B PDE1A TNFAIP8L3 MB21D2 NUTF2 SLC30A3 KCNK1 SYNGR1 MAP1A COTL1 LRFN3 SSTR2 FXYD6 THY1 EFHD2 C12ORF49 CPNE4 PGM2L1 VDAC3 MTRNR2L6 HAPLN4 NGRN OR6D1P IDS GTF2H2C_2 PCDHGA5 PCDHGA10 PCDHGA6 C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM2 SNAP25 MT-CO3 MT-CO1 VSNL1 CALM1 CKB MT-CO2 CLU MAP1B RTN4 NRGN SLC1A2 ENC1 RTN1 HSP90AA1 MT-ND2 ACTB STMN2 PEBP1 UCHL1 GAPDH SPARCL1 TUBA1B COX7C TUBA1A CADM2 SYT1 CHN1 CPE ARPP19 FTH1 OLFM1 OXR1 TSPYL1 TMSB4X PPP3CA RTN3 SERINC1 CHI3L1 NCDN DPYSL2 CCK RPS15 RAB3B MT-ND4 GRIN1 ACTG1 NDFIP1 MTRNR2L12 MT-CYB PPIA OAZ1 HSP90AB1 TCEB2 YWHAH NGFRAP1 ITM2B THY1 SARAF CREG2 RHEB TMSB10 PSAP TUBB2A GPM6A DYNLL1 PTGDS MTRNR2L1 YWHAB NECAB1 PSD3 RPL32 STX1A CALM3 GLUL TSC22D1 TSPAN7 SLC1A3 CAMKK2 YWHAG SIRPA LMO4 ATP1B1 ALDOA RAB3A SOD1 NDUFA4 PRNP ATP2A2 SRP14 VAMP2 SYT11 APP PRKCB RGS4 SKP1 MYL12B NEFL ATP5B COX4I1 ATP1A1 EIF4A2 GAP43 CEND1 MT-ND1 SYTL2 ATP5J2 MTCH1 CADM3 POLR2I ARL6IP1 ELAVL4 STXBP1 COX5B MT-ND3 PFN2 UBB SYN1 STMN1 GUK1 RPL15 CD59 BNIP3 NEFM PKM TUBA4A MT-ATP6 TUBB4A CLSTN1 GNG3 ATP5G3 RAB7A ATP6V1G2 TPI1 GPR56 BEX2 FKBP1A ANXA6 NAP1L2 PTGES3 ZBTB18 PSMA7 MAPRE2 PINK1 NRCAM SOX9 ARHGDIA CYFIP2 LMBRD2 RAB6B UQCRQ TRAPPC1 ITM2C MED10 GABARAPL2 EIF1B RAB3C HK1 PHYHIP ATP5A1 ATP2B2 MORF4L1 PDP1 MAPK1 VPS35 CSDE1 SERF2 PET100 RAB2A RPL21 C14ORF2 RPL41 CDK14 WSB2 GUCY1B3 NDUFB2 SEPW1 HIGD1A CA11 ATP1A2 ATP6AP1 BEX1 ATP6V1G1 F3 PLCB1 ZFAND5 TOMM7 TMA7 HSPA8 AP2M1 ATP6AP2 PTMA ATP1A3 PEA15 SNRPN SNCG SRP9 RPL13 EIF1 ATP6V1F TESPA1 PRDX5 REEP5 ALDOC TCEAL2 SPCS2 TAGLN3 NUAK1 SNCB TMEM258 DSTN BSG SPOCK1 PREPL CACNG3 SERPINI1 APLP1 VDAC1 FAM127A NELL2 UQCRB ISCU SUMO3 AK5 RHBDD2 MTRNR2L6 TBC1D15 DYNLT3 NREP TBCA PLD3 ENO2 SMS GABARAP RAN RRAGA KCNA1 NCALD MORF4L2 ARPC4 RPL11 CDK5R1 ATP5E RPL37A HEPN1 ITFG1 TCEAL3 CCT5 C6ORF1 CFL1 NDUFB11 SH3GL2 CAMK4 RAMP1 RAP1GDS1 RCAN2 GDI1 TGOLN2 UQCR10 MAPRE3 RPS26 SPTBN1 PTPRS PSMB7 INPP5F GPX4 UBC COPE KIF21A PPP2R1A TPT1 KLHDC3 RPL31 NBL1 CAMK2D HMGCR WDR47 MT3 ATP2B4 KIF3C YJEFN3 CLTA GRM3 SUB1 TNNT2 FAM163B CHCHD2 SLIT1 POLR2J PPDPF NDUFV1 GNG2 RAPGEF5 HOMER1 RPL3 NDUFC1 FKBP8 NDRG4 CAPZA2 ACOT7 LPPR4 CYCS ATP9A POMP FXYD6 RPL36A ACTR1A CRYM BAD SLC17A6 SV2B MZT2B DGUOK HPRT1 SUMO2 FTL BASP1 HOPX USMG5 PJA2 WASF1 SNCA CLTC KCNF1 TOLLIP HNRNPH2 RPL17 PFN1 MLF2 PCMT1 EDF1 GPR26 CHL1 PIN1 SLC39A10 TBCB LANCL1 CHRDL1 SEZ6L2 PTPRZ1 TMEM59L LDOC1 SLC24A2 CRIP2 SERPINE2 SNRNP25 COPS7A PGM2L1 TMOD2 GRIN2A SLC17A7 CTSD PITHD1 RAP2A CDC42SE2 TMEM150C SPRYD3 TMEM70 C14ORF132 ERH TSPYL4 COX6C AES RNF11 PCDH19 NPTXR SEZ6L GABRA1 SLC35B1 MTX3 ENSA WARS CST3 VSTM2L MTPN TXN NELL1 NAP1L5 MAP1A UQCR11 TPD52 ATP5G1 ZFP36L2 NDUFA8 MDH1 RPL38 FBXL16 GPRC5B MPC2 SPOCK2 NDUFA13 MTATP6P1 TPGS2 RP11-111M22.2 MAP7D1 TMX4 UBL5 RPL18A SSTR1 UQCRFS1 NSF MIF NR1I3 YWHAQ ARL6IP5 DMTN PEG10 PRKAR1B HSPB1 H2AFZ NCEH1 C9ORF16 KLC1 GOT1 EIF1AX ELMO1 CHP1 TCEAL7 PGRMC1 SYPL1 CAP2 COPS8 ANO3 CCDC25 ABHD8 KCNA2 DYNLRB1 BCL11B FAM3C SLC2A1 GLRA3 HN1 PDCD5 LDHB LGALS1 ADAM23 OCIAD1 PNMA1 DHCR24 C20ORF24 GOLIM4 MAGED1 RPL6 RBX1 UBE2F NNAT SLC22A17 WBP11 GRIN2C CA10 RPL7 CKS2 SUCLA2 PCDHGA10 PAM CLTB UROD PCSK1N NDUFB8 ATXN10 TTYH2 AHNAK2 UBE2N S100A13 RNASEK-C17ORF49 SHARPIN PNMA2 TOMM20 JUND MARCKS AZIN1 HINT1 CCDC184 PRKCG STX1B PFDN4 SSBP3 SLC25A6 PCSK1 UBE2V2 TOMM70A RAB27B THSD7A FAT3 CCDC115 WBP2 MSMO1 MAGEL2 CNTN1 ATP6V0E2 ZNF423 FBXO8 RPS19BP1 DIO2 OPA1 PHB GDE1 APLP2 PI4KA DNAJB6 DYNLL2 SNX3 PSMC3 PGK1 MAP1LC3A RPL8 VAT1L GADD45B TALDO1 PRDX1 RAP2C NDUFA11 ARL2BP MRVI1 FARSA COX6A1 SDC4 ATP6V1E1 COL5A3 RPL26 D4S234E DIRAS1 RPL39 COX8A PELI3 ARF5 MDH2 BSN NAP1L3 INA FSCN1 CLDND1 COX7A2 GPR37L1 EPHA6 SNAPC5 NEUROD1 TOMM34 SERINC3 BEX4 CDH8 TMLHE NDP ADORA2B NDUFB1 NDUFB7 ATP6V0C RHOC MAP2K4 SEC61G NDUFA12 PPP2R4 TMEM11 COA3 PPP1R9B RAB11FIP5 UBA52 FKBP4 CNTNAP5 COX17 MPP1 NFIA KCNK1 SLC8A2 SCAMP5 RFK SELM TIMP3 MAGEH1 BIRC5 NGEF LINGO1 RAP1GAP2 PDGFRB PEX5L TMEM160 SCN1A HS6ST3 REPS2 NAPA BSCL2 PPAP2B TMEM63A PRRX1 CABP1 RAB40B PAFAH1B2 MFSD6 IPCEF1 TRIB2 AAMDC TPPP IFI6 PGAM1 TMEM130 ZCCHC17 PTPRN2 MLLT11 TM2D3 BANF1 NRN1 ATP6V1B2 RAB37 CDC37 MAP4 UBE2D2 INSIG1 IDH3A HDLBP PRKACB AGT ETV1 MAP2K2 NUTF2 NGRN TMEM191A STMN3 AP1S2 CAPNS1 CAB39 TMEM141 EDNRB CDKN1A MBP WBSCR17 MT1X LIMK1 UHMK1 MRPS21 SSTR2 SYT4 SLC6A1 SCOC SMAP2 C1ORF115 HCN1 KCNH5 CTBP1 FAM84A XAF1 RAB11A CHMP4B STRAP NARS LAP3 CLIC4 TRHDE PITPNA ACP1 EPDR1 EGR1 CD63 EIF4G2 MRFAP1 FGFR3 SH3BGRL3 NUDT4 MLC1 SLC6A17 PPA1 APBB1 CDS1 RPS12 FAIM2 VAPB FAM189A2 MAGED2 MAP7D2 JUN NME1 TMTC1 UQCRC1 SLC12A5 BCAS2 MRPL20 YWHAZ SDCBP DEXI PPP2R2C RABAC1 GTF3A ACTR10 WLS ACLY ESYT1 COX6B1 WASL SCN3B PSMC5 SYN2 PSMD8 NPTX1 NMNAT2 GABARAPL1 KIF1A GNAQ RPS2 RSL24D1 MTG1 UBQLN2 SIGIRR FGF12 DKK3 PPP2CA DRAP1 IFT52 ST20 EID1 AQP4 CLIP3 TLN2 KIFAP3 EPB41L3 ZFP36 ATP5J UBE2E3 C3ORF80 PEBP4 MYEOV2 ARL4C TBR1 PFKP LZTS1 GDA RPH3A RTN4R NFE2L1 GRM8 MGST3 DPY30 NDUFS5 SLC25A22 SLC9A6 HMP19 MAP2K1 LDB2 RAD23B KCNV1 GHITM RNF181 SYNGR1 S100B LAMP5 MCHR2 HMGCS1 QDPR FAM19A1 NAA38 ATP1B2 SUMO1 FIS1 NDUFB5 ZNF365 RPL35 MAPK8IP2 FUNDC1 CMPK1 TMEM65 COTL1 C7ORF50 PEPD SYNPO MED31 DCLK1 MRPL47 EPS15 UQCRH RP11-20I23.1 PTPRN PRDM8 CDK17 OLA1 CDK5 RORB USP5 TSC22D4 ABRACL MTRNR2L8 HSPB8 VSTM2A ARFGAP2 TUBB3 IDS PSMB3 RAB13 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 MT-CO1 MT-CO3 MAP1B ENC1 CALM1 CALM2 CHN1 MT-ND4 RTN3 MT-CO2 RTN1 TMSB4X TMSB10 ARPP19 NRGN MT-ND2 GAPDH ATP1B1 VSNL1 PRKCB TUBB2A RTN4 YWHAG STMN2 ACTB SEPW1 TUBA1B HSP90AA1 NGFRAP1 FTH1 CALM3 PEBP1 RAB3B CLU MT-ND1 SLC39A10 NPTXR NAPB PRNP THY1 CKB PRKACB TUBA1A KLC1 GPM6A GDI1 ATP6V1B2 PREPL PGAM1 SARAF SERINC1 YWHAB CPE VAMP2 OLFM1 TSPAN7 NECAB1 PGM2L1 STMN1 DPYSL2 MT-ND3 MTRNR2L1 SLC17A7 BASP1 YWHAH MT-ATP6 STXBP1 IDS NRCAM APP BEX1 TSPYL1 MORF4L1 SCN3B REEP5 ATP6V1A ACTG1 SNCA YWHAZ DCLK1 ITM2B PSAP SERPINI1 SPARCL1 HSP90AB1 ITFG1 TMX4 TPI1 ARF5 APLP1 SYN1 SERF2 GHITM DYNLL1 SYN2 PTPRN ATP6V0E2 GDA HMP19 MAPK1 NDRG4 PRKAR1B CHGB PJA2 PLD3 ARL6IP1 PKM SNRPN ATP6V0C PLCB1 CFL1 CREG2 SYT4 GNAQ BNIP3 OXR1 EIF1 AP2M1 LMO4 CLSTN1 CCK RP11-20I23.1 PSD3 C14ORF2 RGS4 TUBB4A MT-CYB CLIP3 RPL41 CADM2 TBC1D15 SRP14 CEND1 MAP1LC3A MTCH1 CTNND2 UCHL1 PDP1 CNTN1 SERINC3 SUB1 CDK5R1 NDUFB8 SNAP91 NEFL MTRNR2L12 COX6C GABRA1 ENO2 NDFIP1 ALDOA FTL NELL2 EFR3A RP11-111M22.2 ATP1A3 CAMK4 ARF1 RAB6A RAB3A BSN MTATP6P1 AK5 TAGLN3 FAT3 HMGCS1 DNAJC6 CLSTN2 TMEM59L TSC22D1 SOD1 TCEB2 FXYD7 FAIM2 WBP2 TPPP PPP3CB ATP2A2 NDFIP2 EIF4G2 PPP2CB KCNV1 NAP1L2 RAB3C KIF3C KIF1A PFKP ANAPC11 RPL38 PACSIN1 RPL37A SPOCK1 ATP5I GRIN1 RPL31 NEGR1 SLC22A17 DKK3 PPIA PGRMC1 COX7C OAZ1 SLC24A2 MAPRE2 LPPR4 PRKAR1A CAP2 SYNGR1 SCG2 NAP1L5 RAB2A RHEB NDUFS5 GRIN2A RPS15 HINT1 DSTN STMN3 HTR2A PPP3CA SV2B MLLT11 RANBP1 PNMA2 SYTL2 MAP4 WASF1 ARF3 UQCR10 IDI1 C11ORF31 CA11 PIK3R1 UBC UBE2V2 ATP2B2 GUCY1B3 PPP2R1A NSF MAP2K4 DIRAS2 RPL13 PCSK1N ATP1A1 CYFIP2 HMGCR PCP4 GRINA MTPN SNCB ATP9A TGOLN2 MRAS OPCML CHL1 CDC42SE2 PHYHIP CAPZA2 EIF4A2 SULT4A1 HPCA KIF21A CAMK2D COX4I1 TOLLIP SCD5 SNX10 UHMK1 MDH1 SLC30A3 CCDC85B BEX2 TBCA SPTBN1 HOPX ZNF385D SSBP3 PSMC3 SLC12A5 MGST3 ZFAND5 DPP6 TRMT112 PGK1 UQCRC1 KCNC2 ATP5A1 YAF2 NCAM2 CYCS C14ORF132 ACOT7 APLP2 ATP6V0B ATP5J EID1 NCALD NCDN FKBP1A SCOC NDUFA4 PFN2 KCNAB2 TERF2IP GAP43 TRIM37 PI4KA PPM1A RFK COX6B1 WARS AP1S1 MTRNR2L6 UBA1 AZIN1 TUBA4A COX6A1 RPL13A GUK1 RPL15 CAB39 OCIAD1 RAB1A PCDH19 EIF1AX RPL3 GPR158 PPP1CB SH3BGRL3 PTMA FXYD6 NTNG1 FBXO2 BIRC5 WDR47 SH3GL2 VDAC1 UBQLN2 UQCRQ SNCG PDE1A PAFAH1B2 RAP1GAP2 PNMAL1 NCEH1 EDF1 MFSD6 EPB41L3 STMN4 VPS35 ARL8B FAM3C RAPGEF5 FGF12 DYNC1I1 C1ORF52 SYT5 ZBTB18 CADM3 PPP2CA RPS3A PEA15 BAI2 UBE2QL1 TOMM7 ANO3 ATP6V1C1 NDN COX7A2 NREP FAM163B RPL8 PPP2R2B TMA7 SPRYD3 SELT RPL7 ATP6AP2 PPP3R1 B3GALT2 RHBDD2 OXCT1 LMO3 TUBB4B CHMP5 PINK1 ISCU RABAC1 LSM4 GOT1 MZT2B BSG DIRAS1 MED10 ATP5G3 TMOD2 GNB1 STX1A WASL PPP2R2C POLR2I PIN1 PCMT1 SIRPA UQCRH SLC9A6 BSCL2 NDUFA13 NR1I3 FAM127A MT3 PSMA7 TXN GABRA5 CLTA C1ORF115 CTNNA2 PSMD8 C2ORF80 PRKCE TOMM20 YWHAQ SLITRK1 RASGRP1 NDRG3 ELMO1 PSMB7 UQCRB PRDX3 TCEAL7 NEFM CLTC C9ORF16 SMIM13 NIPA1 TMEM70 AKAP12 ETV1 MAGED1 DNAJC5 REEP2 COX5A NUDT4 CTSD CLIP2 COX14 EPHB6 RXFP1 ATP6V0D1 CPLX1 WSB2 RPH3A MT-ND4L RAB27B SLC6A17 TCEAL3 PRDX1 ERH ATP2B4 BEX4 UBE2N SYNJ1 ANXA6 AES SAP18 PRUNE2 RPL21 ATRN MAP1A GNG3 MLF2 RAB6B UBA52 FSCN1 FABP3 RPL32 MAP1LC3B SCAMP5 PHPT1 OAT GLRA3 MRFAP1 HIGD1A RPS10 JUND SLIT3 RPL35 LANCL1 FABP5 GPX4 NDUFA1 COL5A2 CDK17 SEZ6L2 NDUFV1 PET100 SYT13 MT-ND5 ARHGAP35 RPS28 ATP5B DYNLRB1 USMG5 CNRIP1 GUCY1A3 PCBP1 ELAVL2 CERS6 ACTR1A NAPA ATP6AP1 VDAC3 RAP1GDS1 BRK1 MAST3 MIF DDN GMFB LDB2 GABARAPL1 RNF11 NRN1 LYNX1 ACTR10 LINGO1 HCN1 CABP1 ARL4C UBB TUBB3 RNASEK-C17ORF49 RAP2A TPT1 SPARC ATP6V1F LMBRD2 LRP1B CAMKK2 TBCB APBB1 MYL12B CTNNB1 PLS3 KCNA2 PPA1 RPL11 ZNF365 TPD52 FAM134A MTRNR2L8 RP11-195F19.5 FIBP ROBO2 PTPRS NNAT C6ORF1 PRDX5 SLC8A2 LINC00086 PAM RORB STUB1 SNX3 INA SCN1A GNG2 TKT RAD23B TRHDE TSPYL4 OPN3 MAP2K1 RPL10A SMYD2 NKIRAS1 CDH8 PFDN1 MRPL33 QDPR CHMP4B KRAS DHCR24 JAKMIP1 NPTN MAOB RBX1 ENO1 RPS4X CDK14 ENSA CTBP1 NDUFB7 ATP5E SSTR1 PTGES3 FJX1 PRKCG CDK5R2 SNN GPX3 MPPED1 SPOCK2 RAB11A NMNAT2 PRDX2 ENOPH1 MYL6B RPS19BP1 NPTX2 PSMD12 VSTM2L BAG4 USP5 LDOC1 ELAVL4 NDUFA5 NUAK1 WBSCR17 AP3S1 NDUFA12 GSTO1 ADORA1 NGEF MAP7D2 SUMO2 ACTR6 CSDE1 NDUFS6 C19ORF53 CAPNS1 BEX5 PCSK1 TPRG1L SLC38A1 MYL6 MAGED2 COL11A1 HDLBP MARCKS ID2 HSPA8 NARS CADPS2 DMTN MORF4L2 ALG3 VDAC2 FBXL16 EPDR1 PIP4K2A MDH2 ATP6V1E2 ADD2 KCNMB4 RPS26 KIAA1045 DDAH1 ARL8A ETFB DLD HPRT1 HOMER1 UQCR11 HNRNPA1P40 RPL17 RPL17-C18ORF32 ARFGAP2 TUBB MTND1P23 AC244489.1 NCBP2-AS2 LAMTOR1 DYNLT3 MRAP2 TESPA1 SUMO3 NACC2 PTCHD4 DNAJA1 C4ORF3 SLC25A4 ATP5O NUDT21 PDCD5 LHFP LIMK1 NOP10 ATOX1 GLIPR1 ITM2C RCAN2 SYT3 IPCEF1 MRPL55 INPP5F FUNDC1 SNRPE PRDM8 EDIL3 RPS6 SEC61G MRPL51 PAK1 FIS1 NHP2L1 CBX6 PPDPF SYT11 SLC1A2 RAB7A MAGEH1 FAM174A TMEM130 GDE1 PFN1 AP2S1 DNM3 NBL1 TUSC2 COA4 SUMO1 NPTX1 PTHLH MPC2 COX17 ANXA7 KCNF1 PRSS3 SCN2B COMMD6 MYEOV2 OPA1 FAM19A1 ARHGDIA CALN1 TCEA2 TM2D3 OLA1 CDC37 TMEM117 INSIG1 EPS15 GPR56 WBP11 CMPK1 PTPRM PTPRT CCDC115 HK1 LRFN3 CLTB ATP5C1 VEGFA SKP1 POLR2L GORASP2 ISCA1 TMEM160 DCTN3 CCDC25 CHCHD2 LYSMD2 RPL12 ATP6V1G1 FKBP8 UBL5 ATP6V1G2 PSMC5 STRAP CTXN1 EHD3 PEX5L SERPINF1 CDKN2D PNMA1 HSPA4 STK39 NDUFAF2 SYT17 PNMAL2 RNF181 KCNAB1 PRELID1 TBR1 UQCRFS1 DNAJB9 COQ10B TLE4 MAL2 NELL1 SAMM50 CRIM1 NFE2L1 MAPRE3 TMEM14A RAN TCEAL2 PHYHIPL TEX2 MRPL20 SLC25A6 UBE2M COX5B UROS IQSEC1 SQLE SUSD4 AGA YJEFN3 LAGE3 TOX ELOVL7 GPX1 PMEPA1 HDDC2 OST4 BAALC DBNDD1 EFHD2 DCTN1 ASAP1 MSMO1 UBE2E3 NDUFA8 SYNPR CX3CL1 B3GNT1 PSENEN GRM3 KIF5A FRMPD2 TCEAL5 COPG1 SNRNP25 SMS FASN PDLIM5 MYRIP NDUFA2 RPS27A SLC25A11 RPL39 CRYM NAT8L PEF1 TMEM258 CNTNAP5 POMP LAP3 RRAGA ATP5G1 RASGRF1 CA10 MMD NDUFA11 AURKAIP1 NDUFB5 PCDHB2 LDHB CD59 RPL26 TF MBOAT7 NGRN TMTC1 COX7A2L COX7B GOT2 MORN2 KLHDC3 TENM1 GLO1 COL21A1 GYG1 MCHR2 CYP26B1 SRR CNIH3 CLPTM1 CETN2 GRB14 TIMP2 SMIM12 PITHD1 CNTROB MRPL37 ZBTB39 C19ORF43 CBLN4 PVRL1 MARCKSL1 CST3 AP2B1 TNFAIP8L3 GTF3A EXTL2 CORO2B SLC9A9 NDUFAB1 TMEM191A PEX11G MAPK8IP2 SDC2 CCDC184 CFL2 CDH13 PSMD2 RHOB PNKD LAMTOR2 NDUFB3 CYC1 SPCS2 TMEM155 CYSTM1 RAB40B NRAS DPY19L1 ADAM23 NRSN2 C3ORF80 NOV RPS5 TMEM150C CYP2R1 KLF2 MYBPC1 SUCLA2 NDUFB10 ETV5 SCAND1 RSL24D1 RRM2B IL15RA KITLG TALDO1 PAQR9 TSPAN33 SLC7A8 APOC1 SLC9A3R1 GADD45B CPNE8 SYNPO C1QBP SHC4 TLN2 PODXL DGKG FBXW11 TEX40 PIP5K1B SERTM1 CARD16 DUSP6 SPRTN TMEM35 ARHGDIG CDS1 TMEM65 FAM219A BMPR1B EGR1 SPON1 KLC2 SDF2L1 NUTF2 ATP5H GABARAPL2 PITPNA WNT5A TMEM147 COPS8 ASAP2 MRPL12 ETS2 NDUFB2 PARM1 EIF1B ZMYND12 RNF208 OTOA SRD5A1 CTC-535M15.1 RPL18A CLDND1 RP11-632C17__A.1 FSTL5 ABRACL ADAMTS9 LAMTOR5 SPHKAP NAP1L3 DNAJB6 NEUROD6 C12ORF57 IGSF21 HNRNPH2 GBE1 CDH7 NEUROD2 GPR68 ACP1 ZMAT2 GRIN3A GSKIP TPGS2 ADCYAP1 CNR1 REPS2 CYB5R3 TXNDC17 DYNLL2 MFGE8 PLCH1 LL0XNC01-16G2.1 PRKD2 HEY1 PDGFRB ZNF343 ANAPC13 C16ORF93 ARSJ CACNG3 CAMK2G ATXN10 MANBAL PPTC7 DRAP1 JUN MAP7D1 MRPL47 RASGRF2 STX1B ARPC4 GSK3A IMMP1L OLFM2 PTK2B VSTM2A PLCXD2 ONECUT1 NTN4 FAM131B ARPC5L SKAP2 FAM149B1 SLCO4A1 MB21D2 ADSS THOC7 VAPB MRPS21 CD63 PSMB5 ACLY ESYT1 CACNB1 COPS7A TP53I3 NDUFB1 MLC1 ANKDD1B PEG10 NRF1 ATG101 SLC38A11 TRIB2 KLK7 COA3 MED31 TRIM36 NME1 ALCAM SLIT1 PTGDS HCN2 UBL4A PSMB3 HN1 CCT5 OPRM1 ALDOC TCEB1 ISG15 C19ORF70 HRH3 RAB4A LRRIQ1 SCN1B NDUFC2 RGS12 ARL2BP COX8A CRIP2 GSTP1 SEZ6L TMEM151A GNG5 CAPZB CISD1 CXXC4 SPRN EGFL7 HRASLS5 HS3ST4 DGUOK ATP6V1E1 HSPB8 BRINP3 MIEN1 SNX17 CMAS VGF SRM C16ORF13 ALDH5A1 LMBR1 SH3RF1 FAM19A2 TMEM158 COL12A1 UBE2F CHP1 SYNGR3 RAB31 GSTT1 NDUFB4 BCAS1 NDUFB11 HS6ST3 CDKN2AIPNL KAL1 SLC24A3 NEK7 IDH3A AQP10 GRPEL1 ATP5F1 CPLX2 PTPRZ1 S100A6 HHATL RHOA ARHGAP24 NR4A1 LINC00087 PPP1R9B C2ORF47 PCDH17 MAP2K2 FAT1 RTN4R RTBDN ACAT2 D4S234E GABARAP IFI6 PTPRN2 ZNF503 BANF1 SV2C YIPF3 COL6A1 MFN2 ASNA1 SMAP2 VWA1 CAMK2N2 MIR6723 LINC01296 RPL36A C18ORF32 PCDHAC1 PCDHA10 PCDHA9 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ATP6 MTRNR2L1 IDS MT-ND2 MTRNR2L12 TSHZ2 FTH1 MT-ND3 SNAP25 ATP1A1 MT-CYB NDUFB8 RAB3B SYTL2 PNMA2 SYT1 ATP6V0E2 MT-ND1 SLC22A17 OAZ1 CHN1 RORB PLEKHD1 MT-CO2 CLSTN1 PDP1 RTN1 NPTXR LINGO1 PCSK1N BIRC5 EIF1B EIF4A2 ARHGDIG TTN ARL6IP1 RPL37A UQCRC2 GUCY1B3 ANO3 NRGN CBX6 RPL13A VGF LMO4 RPS27A CDK5R1 NMNAT2 GNAQ MTATP6P1 CPNE4 MT-ND4 PPP1CB NUAK1 HK1 MME CALM3 DPYSL2 RAPGEF5 STXBP1 MTRNR2L6 PRKACB ISCU RPL6 SLC12A5 LMO3 RP11-20I23.1 ATP6V0C ATP1B1 NARS NAP1L2 PCDHB10 PCDHGA5 SCAMP5 PREPL ACTB OPCML SYN2 MYL6B MAP1B SPARCL1 CDH13 NAPA RELN ATP5E TIMP2 NEFL CDC42SE2 COL6A2 KIF5A SLC25A4 ATP2B2 CDH8 CHP1 RPL13 TOMM7 CAMKK2 OCIAD1 UBB DCTN1 ZBTB18 GPR98 SYNGR1 SLC9A6 PITPNA CALM2 VAMP1 APLP1 VIPR2 PEF1 APLP2 PGK1 VAPB CALM1 ZFAND5 MTRNR2L8 CABP1 RPL32 TM2D3 MYRIP RPS15 ENC1 CLTC GNG3 OLFM1 KIF1A CTBP1 SOD1 SH3BGRL2 GCH1 RAB7A PAK1 TMEM130 AES COBLL1 BSG PPP3CB FAIM2 RAB3IP TRIB2 PIK3R1 SEMA4G GPM6A EPS15 CORO2B NRCAM BEX4 KCNV1 FSTL5 ID2 PSMD12 NDFIP1 CCDC69 MSMO1 RHEB APP YWHAG RPL15 RAB3A PCYT2 SMIM13 ATP5O SKP1 HDLBP CYCS NREP BAI2 COL12A1 CREG2 ATP5B COX5B ITFG1 PTMA PRDX1 TCEAL5 RPL41 DIRAS2 NEUROD6 MORF4L2 RP11-111M22.2 CRYAB NECAB1 NFE2L1 PGRMC1 RSL24D1 NELL2 NDUFA13 NEGR1 BAALC NAP1L3 TMX4 FBXL16 TPGS2 CMAHP CNR1 NUDT21 PFDN1 CCK DGKG RPL31 MAP4 WDR47 HTR1F TCEAL2 PPP2CA SLC39A10 TUBA1A SCN3B ABI3BP TUBD1 DYNLL1 HSP90AA1 SLC7A1 RPL8 SARAF WASF1 YWHAB PARM1 PJA2 TBR1 SRP9 MAPK1 RAMP1 CNIH3 BAG4 MAPK8IP2 TSPYL4 ARF1 ACTG1 CAP2 CPE RTN3 WBP2 TLN2 RAB4A INPP5F RPL26 HSP90AB1 C14ORF132 PSD3 STMN1 RPL21 ATP6AP1 APOLD1 RPL17-C18ORF32 NSF RPL17 NGRN SERPINE2 PCDHA10 PCDHA4 PCDHA9 PCDHAC1 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 RAB3B SERINC3 SLC12A5 MAP1B CALM1 USMG5 EPHB6 SCN1A RP11-111M22.2 PTCHD4 PPP3CA STMN1 RORB ACTB CKLF SLC24A2 HAMP GPM6A RPL7 BAI2 SPARCL1 TMEM59L ATP2B2 SCN3B CHN1 PSAP THY1 UCHL1 STX1A RTN3 FAIM2 SIRPA NPTX1 SNAP91 BASP1 NOV GPR98 TSPAN7 SCAMP5 ATP6AP2 PSD3 PGM2L1 BIRC5 ZFAND5 B3GALT2 SCD5 C1QBP SMYD2 MPP1 HCN1 CX3CL1 NRGN SLC8A2 GHITM PRSS3 TMA7 FAM134A KCNAB2 ASPDH CCK MORF4L1 PJA2 NACC2 HS6ST2 NDUFA4 ATP1A3 CREG2 RPL39 SERF2 CAPZA2 PPP3R1 PIK3R1 CLU APLP2 NGEF YWHAB CDH7 RPL13A SULT4A1 STMN2 CDC37 CRYM RAN GABRA5 MT-CYB IDH3A COX7B MT-ND4 SLC22A17 SELT ATP6V1B2 RPL32 ARL4C PPP2R2C VEGFA HAPLN4 UBA52 PRKACB TOMM7 CPE NAP1L2 NRCAM OAZ1 WBP2 RELN SSTR2 NDFIP1 PRKAR1B TMSB10 CDKN2D ELAVL2 TRIM37 PDE1A NELL2 EXTL2 UBE2N DYNLL2 SEPT4 GABRG1 SARAF EIF4A2 RPL6 SNRPN CCDC121 ASB13 PCDH8 PGAM1 THSD7A UBE2QL1 NCEH1 RNASE1 SDCBP CAMK2G KCNC3 NUDT4 MAP4 UBA1 LMO4 SOX9 STXBP1 ENO2 FBXL15 ANLN ATP6V0E2 PINK1 IDS YAF2 RPS28 SUMO2 BSCL2 CBX6 STAG3L5P TMEM130 RPL3 TSPYL1 COX17 SLC38A1 YWHAZ HSP90AB1 MARCKS EPB41L3 NDUFA5 TMX4 SMS MT-ATP6 EID1 MGST3 DKK3 MYRIP GAPDH CABP1 GUCY1A3 PITPNA ZNF536 NDRG4 TMEM155 NDUFA13 RASGRF1 GPR56 ATP5B TBCA MAPK1 INPP5F DPP6 COL11A1 OPALIN MT-CO1 MPPED1 COL6A1 NELL1 CLPTM1 DCLK1 ARL6IP5 EFR3A ATP1B1 KLC1 NDUFA11 RGS4 MTX3 NPTXR CHGB CKB WASL SYT4 TMEM35 NDRG2 CALM2 HILPDA PPIA STMN3 ARL6IP1 MDH1 BRK1 TGOLN2 MYL12B GABARAPL1 SEC61G TUBB3 RP11-20I23.1 LINC01296 GPNMB NSF ATP6V0C\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SYT1 MT-CO2 SNAP25 CHN1 MT-ND4 GPM6A MAP1B MT-ND2 MT-ND3 MT-CYB CALM2 CCK RTN4 CALM1 SLC17A7 RTN3 VSNL1 PPP3CA NPTX1 ARPP19 CAP2 RTN1 ENC1 PRNP PRKCB NPTN NRGN YWHAG TUBA1B MT-ATP6 ATP2B2 SYN2 PREPL NECAB1 PPIA SPARCL1 PNMA2 LMO4 HSP90AB1 SERINC1 CLU TSPAN7 AK5 YWHAH ACTB ZFAND5 CNTN1 MT-ND1 PRKACB SLC9A6 RGS4 IDS ATP1B1 MTRNR2L12 ARL6IP1 ACTG1 ATP6V1B2 NGFRAP1 OLFM1 PJA2 CDK5R1 EIF4A2 MTRNR2L1 CLSTN1 GDI1 CALM3 DPYSL2 MTATP6P1 APLP2 CADM2 YWHAB TSPYL4 FTH1 GUCY1B3 APLP1 ENO2 DIRAS2 SLC39A10 NCALD PKM VAMP2 TSC22D1 THY1 RHBDD2 NUAK1 ATP1A1 SPOCK1 CREG2 STXBP1 NAPB MAP2K1 SNCA PEX5L BSN YWHAZ KIF3C PHYHIP APP BEX1 NDFIP1 SCN3B SPTBN1 WASF1 MAPK1 DNAJA1 TMSB4X LPPR4 AP2M1 MT-ND4L DCLK1 SARAF RPS15 STMN1 OCIAD1 NUDT4 NPTXR LINGO1 MTPN DKK3 TPI1 TESPA1 OAZ1 GNAQ TSPYL1 PPP2R1A GAPDH FXYD6 CLIP3 NGRN DNAJB6 NCAM2 CHL1 TMEM14A MTRNR2L6 CKB CDC42SE2 RASGRP1 PIK3R1 DPP6 CAMKK2 TUBB2A MT-ND5 PI4KA PPP3CB CABP1 FAIM2 EFR3A CLTC SYN1 PDP1 NRCAM ATP6AP2 DYNLL1 SNCB BSG SERPINI1 TPD52 TERF2IP SUB1 HSP90AA1 GABRA1 ETS2 GAP43 STMN2 PLCB1 PRKAR1A NDRG4 SNRPN TOLLIP PFN2 TBC1D15 CFH PGM2L1 ATP1A3 SYT4 CYFIP2 PPP1CB CDK14 SV2B SCG2 TMEM130 SLC24A2 ID2 MAP4 PDE1A ELAVL2 NGEF ATP6V0E2 ZNF365 OXR1 TUBA1A TMOD2 BASP1 MAST3 ATP6V1A KIF5A SLC12A5 RNF11 ATP2A2 CAMK2G INA PCDH17 TUBB4B NSF SNAP91 CERS6 FKBP1A GUK1 SELT PEBP1 CDK5R2 PSAP PPP3R1 PTK2B CPLX1 ATP9A INPP5F KIF1A FKBP8 SYNPO SYTL2 ENSA CAPZA2 TOMM20 CDKN2D PPP2R2B RPL37A MLLT11 CTXN1 TMEM155 PSMD12 C1ORF52 NDUFA5 RAB3C RLIM C1ORF115 GNG2 MTRNR2L8 COPS8 SEPW1 GRIN1 POLR2K CLIP2 LDB2 ARF3 PTMA SSBP3 MAP1LC3B CX3CL1 MAGED2 DMTN RABAC1 TMEM59L NDFIP2 JUND AP1S1 SOX4 MAPRE2 PRKAR1B TBCA KIF21A RPL26 HMGCR PPP2R4 VAPB VPS35 OPA1 TRIM37 DACH1 PEG10 TPPP PSD3 RPL38 SLC7A1 BRICD5 UBQLN2 CPE RAP2A HOMER1 KLC1 PGK1 B3GALT2 PPP2CB COL24A1 GNB1 RPL32 PGRMC1 SULT4A1 EIF1AX LMO3 PGAM1 NDUFC2 SERINC3 SH3GL2 TMEM65 CRIM1 CAMK4 PAM PHYHIPL RPH3A TMX4 FIGN STX1B NFIA OAT ATP5J2 ATP6AP1 RAB2A MDH1 SLC22A17 CTNNA2 UBA1 SCAMP5 FAM127A GABARAPL1 PAK1 PITPNA NAP1L2 CPLX2 HK1 GNG3 ATXN10 ROBO2 BDNF DNAJC21 MAP7D2 C14ORF2 ADSS CISD1 MKX RP11-195F19.5 KCNAB2 PFN1 COX7A2L ETV5 RAB6B EIF4G2 FXYD7 NAPA PACSIN1 NAT8L LMBRD2 CDKN2AIPNL HMGCS1 CCDC85B SYT11 UQCRC1 MYL6 TUBB4A ARHGAP35 NDUFS5 UHMK1 CD59 CACNA1H STMN4 MYL12B ETFB BEX2 CACNB1 CA10 CMAS EIF1B PSMC5 CAB39 NRN1 BTBD10 SNAPC5 LYSMD2 FLOT2 SEZ6L2 C16ORF13 TENM3 BAALC PSMD8 COX6A1 USMG5 VDAC1 HS3ST2 SUMO3 PCBP1 SPRYD3 LAMTOR5 PPP2CA AZIN1 CTBP1 STMN3 AP3S1 WBSCR17 REEP2 RPL31 RBX1 IQSEC1 TAGLN3 ACOT7 ADORA1 ITM2B CHGB KCNK1 TGOLN2 PCMT1 SLC7A5 VSTM2L ATP5B YWHAQ RP11-20I23.1 RASGEF1B SKP1 DNM3 ANO3 JUN ADCYAP1 EHD3 UQCRFS1 LINC00116 WBP2 NEFL HEY1 IGFBP5 GSTO1 CFL1 TPRG1L RHEB CADM3 VDAC3 PRKCE CRIP2 FSCN1 OPN3 CHMP5 BCL11B STK39 ITFG1 TM2D3 C19ORF70 KCNMB4 KIFAP3 SMYD2 HPRT1 UCHL1 SLC1A2 ARHGDIA PEA15 KRAS ATP6V0C MGST1 HCN1 BCAP31 AP2B1 NDUFA13 TOMM7 TMSB10 ENOPH1 ATP5G3 SOD1 PPM1A MAP2K4 SLC38A1 SPOCK2 APBB1 RPL13 PTPRN2 PFKP VGF GRINA SNCG CSDE1 SLC6A17 SLC30A3 NAP1L3 SCN2B STX1A NUDT21 RPL15 FAM163B SMIM12 HNRNPH2 MB21D2 SLIT1 IPCEF1 HS6ST3 RPS26 STK24 CMPK1 CHMP4B ELMO1 MAL2 ZBTB18 IDI1 LINC00087 COX7A1 RAB3B ZNF385D COA3 NCOA4 B3GNT1 UBE2QL1 MRPL33 NAP1L5 FBXL15 ARF1 SMIM13 GRIN2A CAMK2D IDH3A CLTA POLR2I KCNC2 PPP2R2C LZTS1 RPL3 AP2S1 RAB9A TMEM11 HTR4 SHARPIN ARL8A ENO1 RPL23A THOC7 ATP5A1 DYNLT3 RAB27B BNIP3 RPS12 COX14 TMEM70 HSPA8 NCEH1 COX4I1 LAGE3 MFSD6 SERP2 SYNJ1 TM6SF1 PAFAH1B2 LMBR1 RAPGEF5 RPL36A RP11-111M22.2 SNX3 SLC9A1 ANXA6 NPAS3 NELL2 NDUFB8 TKT MPPED1 PAQR9 PTPRN RHOB NRAS TMEM150C ELAVL4 CPNE4 ATP5J TCEB2 HCN2 EPDR1 RPS3A MBP DYDC2 CACNG3 RAD23B PLD3 MRAP2 ARPC5L EGR1 CYSTM1 PPDPF NDUFB1 MZT2B CA11 SRP9 ATP5E KLF2 CDHR1 EID1 DDN BEX4 NDUFA1 NDUFC1 RORB EPB41L3 ATP6V1G1 RAB40B KCNAB1 MORF4L1 SEMA3A RRAGA MPC2 SLC8A2 PTGES3 C9ORF16 SALL2 KITLG SCOC KLHL12 CPNE8 CLEC14A NFE2L1 ATP5O RAB3A CRKL RAB1A PIN1 NTNG2 ACLY WBP11 ATP5G2 C19ORF10 TMEM141 CAPNS1 VAMP1 CLSTN2 SIRPA ARPC4 D4S234E EPS15 KCNA3 NREP PARM1 TEX2 SYT5 RHOA PLAC8L1 CDH22 HTR1F SUMO2 C1QBP SNN NEFM UQCR11 NIPA1 IL33 SSTR2 SEZ6L LSM4 YAF2 CDC37 PINK1 DYNLL2 ZMAT2 CLDND1 KLHDC3 TCEAL2 KCNA1 RASGRF1 PVRL1 CCDC184 DCTN1 TEFM TNNT2 JAKMIP1 DYNC1I1 RAB7A KCNA2 SCN1B ACTR10 OST4 FAM3C MUM1L1 UBE2E3 RPS10 YJEFN3 GFRA2 TMA7 ARL8B GLO1 UBL4A PTGS2 ARL6IP5 TCEAL5 BCKDHB EFHD2 ATP6V0D1 FAM198B ISCA1 FIS1 EXTL2 RPL6 MRPL12 SUMO1 C1ORF95 ZBTB39 CCT5 RPL35 GHITM ARHGDIG EGFL7 NDUFB7 PELI3 SPDL1 ATOX1 CTSD MAPRE3 TALDO1 MAP1LC3A RELN HTR2A KIAA1024 CDH13 RASL11B WASL LYNX1 ADD2 LIMK1 CLPTM1 KCNC3 C7ORF50 MSMO1 MORF4L2 SPCS2 GPR37 GDA RAP1GAP2 DNAJC6 KIAA1045 SMAP2 S100A6 SLITRK1 PID1 PRDX5 RAB6A SUSD4 PFDN1 HHATL HBA2 FAM131B ASAP1 RPS28 C4ORF3 NNAT PSMA7 OLA1 TBR1 ALDOA TENM1 TUBB GRIK3 PRDX3 PTPRS CADPS2 CD99L2 COPRS NDUFA12 UROS CDH8 SNX10 PGD COX7C NEGR1 GUCY1A3 SYNGR3 MAPK8IP2 BSCL2 CDK17 COPE SAP18 NRSN2 RPS2 CNRIP1 NDRG2 ATP2B4 PRDX2 TOMM70A FAM134A MLF2 NHP2L1 PNMAL1 SERPINF1 PCSK1N RPS5 REEP5 MTCH1 RAB11FIP5 SLC39A3 UBL5 GABRG1 UBB CTNND2 UBE2N MAP1A DNAJC5 RCAN2 GPR88 NWD2 IGSF21 PDZRN4 ZNF425 MRPL47 C12ORF49 ARL1 SYNGR1 AES DDAH1 CRYAB RFK MMD TPT1 ACP1 SEPT4 SMS KCTD9P2 CEP72 STUB1 FBXW11 ST6GALNAC3 PSMD2 EDF1 NPTX2 RP11-219A15.1 ATP6V1G2 RNASEK-C17ORF49 GABARAP TUBB3 GTF2H2C_2 MBOAT7 AC244489.1 PCDHGA10 PCDHGA5 PCDHGA6 PCDHA9 PCDHA4 PCDHA10 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 CHN1 SYT1 RTN1 LMO4 MT-ND2 CADM2 ATP1B1 MT-CO2 RTN3 SEPW1 RTN4 MAP1B MT-ND1 CALM2 RP11-111M22.2 SNAP25 CCK STXBP1 TSPAN7 TMSB4X PTPRT CALM1 GPM6A PGM2L1 NUAK1 NECAB1 DPYSL2 BIRC5 RAB3B SYTL2 ITM2B GAPDH OLFM1 HSP90AB1 APLP1 PRKCB ARL6IP1 GABRA1 CLU KIF1A TRHDE TUBA1B NDRG4 RORB HSP90AA1 ACTB TSPYL1 NDFIP1 TMSB10 VAMP2 TUBA4A SV2B PPP3CA PET100 NAPB PRNP EFR3A NEFL PSAP ATP9A SLC38A1 FTH1 COX6B1 DPP6 NAP1L2 SERPINI1 NGFRAP1 GOT1 ATP5I NRGN SPARCL1 ARFGAP2 TOLLIP ACTG1 ATP5B CLSTN1 TSC22D1 UQCRC1 SLC22A17 COPS7A LL0XNC01-16G2.1 WASF1 EXTL2 RPL35 OR6D1P STMN4 PTMA CALM3 USMG5 MT-ND5 ENO2 NREP UCHL1 CREG2 COL5A2 FGF12 PSD3 LYNX1 GDI1 CA11 ATP1A1 PPP1CB GNAQ SNCB RGS4 NCEH1 GRIN2A MT-CYB OPCML TMX4 MT-ATP6 WBSCR17 PRKACB NDUFA1 NELL2 SNRPE MTRNR2L1 SPRYD3 ATP6V1E1 CHL1 SLC6A17 MTCH1 RPS3A SCD5 NDUFB3 HNRNPA1P40 IDS TBC1D15 ZNF385D YWHAB SLC25A6 TAGLN3 KCNAB2 SCAMP5 SDCBP LMO3 VDAC3 RPL11 CCDC184 FAM19A1 SYNGR1 SYNPR GNB1 ABHD8 GAP43 HTR2A ARPC4 RPL41 PPIA H2AFZ PDP1 NDUFB2 SMIM12 LINGO1 NCALD DCTN1 RPL21 SYT4 EIF1AX THY1 GABARAP CHCHD2 CPE HS6ST2 PTK2B TMEM130 ENC1 SYN2 NDUFAF2 TMEM151A ARL6IP5 BEX2 RAB11FIP5 OCIAD1 NRSN2 VSTM2A CLTC RPL3 CD63 FAM134A MDH1 REEP2 RAN CERS6 KLC1 CAP2 CRYM GPX4 DIRAS2 TCEAL3 TM6SF1 MT-ND3 TPI1 NAP1L3 ATP2B2 APLP2 CTNNB1 TMEM35 FBXO2 MPPED1 NCDN UQCRQ ETV5 PIN1 SYT11 IPCEF1 COX5B SNN DYNLL1 ATP5O RAB6B KCNH5 NPTN RHBDD2 EIF4A2 PKM RAB2A COX8A PTPRN2 CHGB KLHDC3 MAP1LC3B MAP2K1 MORF4L1 NDUFS5 UQCR11 BHLHE40 TMEM258 CADM3 CDK5R1 MORF4L2 ATP6V0B MAP2K4 RAB37 RBX1 ADAMTS9 PLD3 EGFL7 ARPP19 ARPC5L ALDOC C11ORF31 TMOD2 MSMO1 HPCA APP SLC17A7 TESPA1 SNCA ATP6V1A FXYD6 AP2M1 CDH8 SLC9A6 BEX1 NDUFB11 TCEB1 STMN2 FKBP8 GABARAPL1 CNTNAP5 B3GNT1 PEA15 FAM3C NUDT4 MAPK1 ATXN10 TOMM70A RPH3A RNF11 SULT4A1 QDPR DCLK1 CLIP2 PREPL COX17 STX1B FAIM2 UQCRH EPHB6 BSCL2 PLEKHD1 TUBD1 PITPNA ADORA1 NEGR1 COX6C PFN2 TM2D3 MTRNR2L12 TCEAL2 TUBB4A ISCU TMEM59L HSPA8 UBE2QL1 RPL37A RAB6A FBXL16 DYNLT3 TCEAL7 FAM19A2 ATP6AP2 ZNF503 NDUFA11 C19ORF53 SLC24A2 PTPRS KCTD12 COPG1 PGRMC1 SNX10 SRP9 SLIT3 SUCLA2 PMEPA1 YWHAQ MLLT11 MAP7D2 SNX3 VPS35 USP5 MAP4 TPGS2 SYNJ1 SYN1 SPCS2 TNNT2 KIF5A SNAPC5 MBP GRM3 SPTBN1 TMTC1 AES MAST3 CCDC25 MYO1B CX3CL1 RPS15 TMEM141 NWD2 CTSD VSNL1 ATP2A2 NDUFB5 SCOC UHMK1 CAMK2D NTNG1 HEY1 TBCA CACNA2D2 AZIN1 ANO3 NDUFC2 GOT2 DMTN PCMT1 TMEM132C SIRPA OXR1 SELM HSPBP1 AP3S1 TOMM20 PPM1A CRIM1 CAMK2G AP1S1 ATP5A1 BHLHE22 BEX5 RAB27B TIMP2 ASB13 PLCH1 KIF3C MAPRE3 SST RPL32 CD99L2 MARCKS MMD CA10 RABAC1 SPOCK2 ELMO1 HSPB3 NDP PRKAR1A CDH22 C14ORF2 WSB2 TGOLN2 PHYHIP NOTCH3 BAG4 PIK3R1 CNGB1 PPARGC1A YWHAH KRAS ATRN KCNA2 ZBTB18 KLF10 AK5 DUSP6 UBQLN2 RPL38 ISCA1 CNP OLFM2 BNIP3 ATP5C1 EPS15 MFN2 ATP6V1G1 BTBD1 MLF2 GHITM SLC1A2 CORO2B THOC7 LMBRD2 C1ORF52 MYEOV2 BCL6 ARL8B ELAVL4 BSN PTGES3 PAK1 COX7A2 IGSF21 VDAC1 RAB3IP STUB1 NBL1 GRINA PLCB1 ZFAND5 MORN2 CBX6 PFDN4 PPA1 ACP1 DEXI NDUFB4 FAM198B PSMC3 BAI2 MAPRE2 MDH2 UBA1 NDUFA5 STMN1 EIF1B GADD45GIP1 UQCR10 TMA7 CSDE1 HMP19 BEX4 RPS5 ACOT7 PPP1R7 ADD2 TUBB2A RPL26 PRDX3 ITM2C RHOB CYFIP2 FILIP1L DSTN KIF21A NR4A1 COPRS FASN PRUNE2 NRN1 HMGCS1 VGF NUDT21 ARHGAP35 PNMA2 TRMT112 BRINP3 PINK1 PCP4L1 ELAVL2 NDUFB1 SNRPN EID1 TUBA1A CADPS2 STMN3 ATP6V0C MIEN1 NGEF MTRNR2L8 FSCN1 ACTR10 RNF208 ENO1 MPI PCDH17 SKAP2 LPPR4 NMNAT2 ATP5J GPR6 PGAM1 OPN3 ARL4C IDI1 ATP6V1B2 FAM219A DKK3 GPX1 MPC2 COX14 BEND5 FOXP2 HS6ST3 REEP5 AP2B1 ADRA1D PELI3 UBC SYT13 CEND1 PEG10 TLE4 TUBB4B DGUOK ATP11C PCSK1N ARL2BP RPS3AP22 SERF2 HCN1 SYT3 TXN GSTO1 RPL18A FRMPD2 SERINC3 PCDHGA5 ATP5E CHMP4B PIFO UBE2N PPDPF MAP1A MAP1LC3A TOMM7 SLC25A22 MAPK8IP2 GORASP2 CLDND2 SEZ6L SEPT4 GFRA2 COX4I1 SERINC1 FAT3 SPHKAP UQCRB GRPEL1 C2ORF74 SNAP91 ETS2 YWHAZ DACH1 PDCD5 NARS RXFP1 TCEB2 C1ORF115 KCNC2 AURKAIP1 COL11A1 CXXC4 GRIN1 DNAJA1 UBB TKT RP11-20I23.1 HSPB8 ITFG1 SCN1A CFL1 LYSMD2 ENSA FKBP1B POMP RPL23A ZNF208 DBNDD1 SYNGR3 NDUFC1 SELT COX7C NCAM2 WASL PPP2CA GPR158 EGR3 BASP1 SLC35B1 HRH3 GMFB KIFAP3 ZNF365 PLCXD3 PNMAL1 SLC12A5 DPY19L1 NPTXR CKB TBR1 PJA2 AP2S1 MMP24-AS1 CABP1 SH3GL2 RPL17-C18ORF32 RPL17 SKP1 MTRNR2L6 NSF PSMB3 RP11-219A15.1 ATP6V1G2 PCDHA9 PCDHA4 PCDHAC1 PCDHA10 TUBB3 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 RPL26 ITM2B LMO4 CADM2 PKM NDUFB2 RPL41 PDE1A SYTL2 DPY19L1 PNMA2 MT-CO3 RORB DCTN1 MT-CYB YWHAH RHEB MAP1B TMSB10 CHN1 CALM1 RTN4 SCAMP5 YWHAB MT-CO1 HNRNPA1P40 RP11-111M22.2 SYT4 GLIPR1 SYT13 OPCML NPTX1 LGI3 STMN1 CTBP1 NDUFB4 NCDN CDK5R2 IDS PRKCB ATP2A2 CYCS FAIM2 OCIAD1 LANCL1 NTNG2 NDUFB8 FARSA ERH FAT3 DDN FBXW11 MARCKS RPL21 DPY30 MAPK1 YWHAQ CYP1B1 UROS FOXP2 RAB1A TUBA1B CNTN1 VPS35 MT-ND2 RPL32 EGFL7 RPL6 OAZ1 NECAB1 PPIA BAG4 STX1A APLP1 RPS28 ONECUT2 ENO2 VSNL1 YWHAG LRRIQ1 RTN3 PRDM8 REEP2 TMA7 NEGR1 PSMD12 NAP1L5 IPCEF1 MRPL20 PLD3 PCDHA10 AZIN1 RPS10 SGK223 ZBTB18 AC244489.1 TLE4 TSPAN7 MT-CO2 PCSK1 TLN2 HAPLN4 ITFG1 PEBP1 COX8A POLR2M MT-ND1 MYEOV2 PLCXD3 OLFM2 NGFRAP1 CSDE1 RPL37A DCC FTL SLC8A2 BASP1 CALM2 EPS15 PLCB1 STMN3 PSAP USMG5 GHITM KLK7 SLC17A7 ARL1 CAMK2D SCN1A ETFB BEX1 KIF1A PFN2 PPP3CA CRYAB RAB7A NUDT21 UBQLN2 NDFIP1 PDP1 SPARCL1 ANAPC11 NDUFA1 TMEM59L TIMP2 ELAVL4 RP11-219A15.1 NSF SKP1 SSTR2 RPL13A RPL36A GTF2H2C_2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-CO3 MT-ND4 MT-CO2 MT-ND3 TF CLSTN2 MTATP6P1 LMO4 CAPZB GDI1 GPM6A MT-CO1 PAK1 CFH RPS26 HSP90AA1 PTMA DMTN RPL32 ARL4C CHN1 MT-CYB MT-ND2 BIRC5 ITFG1 SNCA HSP90AB1 PRNP PPP3CA MUM1L1 RP11-195F19.5 NUDT4 NUAK1 STX1A PVRL1 SPDL1 NRF1 TSHZ2 EGFL7 KLC1 ATP6V1B2 TMSB10 SLC12A5 MAPK1 SYNPR NDFIP1 CNIH3 NEUROD2 FTH1 MT-ND1 PRKCB FXYD7 CACNG3 MT-ND5 NFE2L1 SCOC RTN3 VAMP2 SYT4 RTN4 TUBA1B CSDE1 CDC42SE2 FILIP1L NDUFB5 PRUNE2 TGOLN2 OR6D1P APLP1 PGRMC1 DPY19L1 C7ORF50 WBP2 ENO2 PCDHB4 SLC39A10 SERPINE2 PGM2L1 NREP PACSIN1 YWHAG MORF4L2 HNRNPA1P40 RPL17-C18ORF32 SERF2 C18ORF32 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MT-ND4 MT-ND1 SNAP25 SYT1 MTRNR2L12 MT-ATP6 MT-ND2 BIRC5 TBC1D15 TUBA1B HNRNPA1P40 IPCEF1 MTRNR2L8 PRKCB MT-CYB SLC24A2 FAIM2 KLC1 FAT3 PJA2 TF NUDT4 VSTM2L PRNP DKK3 SPARCL1 CAPZA2 CAMK2G CCK PNMAL1 RGS4 PNMA2 STMN2 PPP3CA AES VSNL1 MTATP6P1 TRIM35 BEX4 SARAF HSP90AB1 SSBP3 CALM3 CAMK2D CALM1 PREPL MT-ND3 ATP6V0E2 CALM2 CHN1 PTCHD4 MTRNR2L1 RTBDN CDH8 RTN4 CHGB NCDN HMP19 PSD3 RPRM CD99L2 PCSK1 LGI3 GSTO1 RPS26 DPYSL2 RPL8 CTSD NDFIP1 GAP43 EIF5A2 SNRPN MDH1 MARCKS NAPA LPPR4 ITFG1 RPL31 B3GNT1 C14ORF2 ARHGDIG ATP5A1 DNAJC5 ATP6V1C1 BEX1 SMIM13 PSAP DPP6 LMO4 PSMC3 CERS6 SNCA SYT11 NREP GABARAPL2 KLHL5 EDIL3 KIF25 VAMP2 STMN4 COX6C SERINC3 BCKDHB RHBDD2 PTPRN KIAA1024 MAPRE2 SDHAF1 EIF1 NGFRAP1 HNRNPH2 RPS4X CLDND1 TUBB4A ATP1B1 ATP2B4 NDRG4 PTPRZ1 SULT4A1 PDE1C FTH1 RAB2A KCNH5 NECAB1 GRAMD3 GRIN2A NAP1L3 ARPP19 MFSD6 GABARAPL1 ADAM23 APLP1 UQCRB RTN1 CDK14 HSP90AA1 ACTB ARL1 NMNAT2 OR6D1P SYN2 CADM2 PKM JUND ATP1A1 MAP1B CYFIP2 TMX4 NUAK1 SIRPA CAMK4 RPL26 CTXN1 PPP2R4 PFDN4 RPS27A RNF11 MAP1A TBCA ATP6AP2 BSG HTR2A CYP1B1 PRUNE2 RPL38 PGM2L1 PCMT1 CRYM DNAJA1 TSPYL4 TMA7 NPTXR DPY19L1 KIF1A SLC17A7 PPP3R1 STMN1 GPM6A CBX6 PLP1 PDE1A SCN1A GTF2H2C_2 CFH IDS RPL6 NGRN MTRNR2L6 TNNT2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND1 MTRNR2L1 RTN1 MT-CO2 MT-ND4 SYT1 RAB3B MT-ATP6 MT-ND3 MT-CYB PRKACB PIK3R1 PNMA2 MT-ND2 ATP1B1 PPP3CA MTRNR2L6 SERPINF1 RPL38 GNB1 RAPGEF5 ENO2 APLP1 CNTN1 NR1I3 NUAK1 MAP1LC3B SIRPA RPS6 PEX5L MTATP6P1 RPL13 RTN3 ATP1A1 RPL41 ENC1 CHN1 TSHZ2 CTBP1 CALM3 STXBP1 ATP6V1B2 OLFM1 OR6D1P MEGF10 PFKFB4 DCLK1 YWHAB NAP1L3 HPCA CPE TSPAN7 GDI1 NRGN SRD5A1 C1ORF52 SYN2 PPP2R4 RXFP1 NDRG4 KCNK1 TMSB4X REEP5 ADORA1 RPS5 MORF4L2 YWHAH MGST1 UBE2QL1 NDUFA8 SUMO2 SULT4A1 RORB COX7C AP2M1 HTR2A SLC25A6 FAM19A2 SPARCL1 RAB11A YWHAZ SERINC1 BEX4 FAM127A PKM NCDN CLDN11 SLC30A3 GPM6A CALM2 STMN3 FAM3C RFK HSPA8 RHOB BCAT1 IPCEF1 MAP1B PEBP1 TOMM20 ETS2 NREP ARL8A CYFIP2 DPYSL2 EIF4A2 KCNMB4 CLU PSD3 KLC2 PTMA HSP90AA1 HSP90AB1 WASF1 CD63 MAST3 PPM1A ATP5E RELN STMN4 CLSTN1 SERPINI1 CADM3 KCNA5 IDS ATP6AP1 CHL1 CCK PHPT1 ZBTB20 NDUFC2 CDK14 GNAQ RPL26 PKD2L1 RAB4A RRM2B CALM1 MT-ND4L TOLLIP SPAG17 CCDC124 PRKCB ARF5 ZBTB18 PLEKHG1 CHGB MAP2K4 CREG2 SLC9A6 CDK5R2 GPNMB BIRC5 ATP6V1G1 NFE2L1 RPL32 CHP1 STX1A SCOC KIF5A RGS4 RAP2A AQP7 EFR3A CDHR1 TOMM7 ARL1 DIRAS2 PRUNE2 TUBA1B EFHD2 ETV5 SV2B ARL6IP1 SLC39A10 RPS27A ARHGDIG PREPL SNAP25 LMBRD2 ATP6V1E1 PJA2 ABHD14A SYNGR1 C18ORF21 C14ORF132 ALDOA B2M RPL13A BSCL2 HNRNPA1P40 PLEKHD1 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L1 MT-ND4 MT-ATP6 MT-CO2 SNAP25 MT-ND1 MTRNR2L12 MTRNR2L8 MT-ND2 MT-CYB MTATP6P1 CHN1 MTRNR2L6 CALM2 TUBB2A NAT8L CAMK2D MAGED2 PPP2R2B SULT4A1 THY1 MAP1B MT-ND3 SLC17A7 GDI1 SYT1 STXBP1 PRNP SCN1A UBE2V2 KRAS HPRT1 IPCEF1 PSMC3 HMGCS1 CLIP3 ARF5 CLTC PGM2L1 CALM1 SPARCL1 KIF3C SERINC3 PTPRM PPP3R1 MAPK1 KIF21A MBP PEX5L MAPRE3 STAG3 NAP1L3 GABARAPL1 ENC1 C19ORF70 SARAF PPP2R1A YWHAZ HSP90AB1 CHRM2 C1ORF52 BIRC5 MT-ND4L SYT4 COX7A1 PEBP1 CABP1 STX1B OR6D1P ARSJ PIK3R1 COL12A1 PRKAR1A MORF4L1 PPIA STMN2 CCDC68 PJA2 PNMA2 PCDH19 SERPINI1 APP JOSD2 KCNV1 MORF4L2 DLC1 BEX5 RNF11 INPP5F BNIP3 SV2B UBQLN2 MMD YWHAG PRKCB STMN4 NPTN NEGR1 ITFG1 ANO3 SLC9A6 DYNLL1 NELL2 TSPAN7 CREG2 ACTB DKK3 LRP1B PCBP1 HRK HOMER1 TMEM258 KLHL5 EID1 LANCL1 TF BSCL2 RPL18A ATP6V1G2 HNRNPA1P40 PLEKHD1 TUBD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PIK3R1 SNAP25 SYT1 RAB3B TSPAN7 EXTL2 MT-ND1 SLC24A2 CADM2 MAP1B CHN1 ATP1B1 PCDHA4 PNMAL2 RELN MT-CO1 PROX1 CD24 KIF5A PREPL RP11-219A15.1 CFH ZNF385D DNAJC21 MPPED1 KCNV1 STXBP1 PPIA CADM3 GPR158 SKP1 ATP2A2 GRIN2A SLC38A1 NUAK1 SCOC VPS35 RPL10A HSPA4 SULT4A1 DYNLRB1 RAPGEF5 UBE2QL1 FTL NCEH1 NRCAM EDIL3 BNIP3 LAMTOR5 PHYHIP GADD45B REEP5 RGS4 TCEA2 FAIM2 IQSEC1 CLU CRYZ POLR2M KCNA1 SERINC1 CKB RPS28 CYB5R3 DNAJB9 CRYBB3 CFL2 NECAB1 KIF21A ZBTB18 C6ORF118 MT-CO3 ADAM23 MIEN1 CPLX3 OLFM1 RAP1GAP2 NDRG4 CPE COL6A1 EIF1AX RP11-139K1.2 COX14 VAMP2 RTN1 BAI2 RORB SNCA LMO4 MT-CO2 RAD23B ARL8B ONECUT2 MAP2K4 TSPYL1 LRRIQ1 OAT MT-ND2 PRNP TUBD1 HPRT1 MFN2 NELL2 PTMA CXXC4 ACTB CD99L2 ELAVL4 COL12A1 PEBP1 PODXL SLC22A17 MAP4 SLC25A22 MAP1LC3B IDS RP11-20I23.1 UQCRB ATP6V0C AC244489.1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B CCK RP11-111M22.2 SYT1 RTN3 SNAP25 BIRC5 TMSB4X PRKACB PREPL MAP1B PSAP NPTXR RTN4 ZNF385D ATP2A2 DCLK1 MORF4L1 CRIM1 ARF1 RAB6A TNNT2 SCAMP5 ENO2 TOMM20 CKB CLSTN1 STMN1 CHN1 NRCAM RPL17 MTCH1 NDRG3 STXBP1 CALM2 DNAJC21 NR1I3 YWHAG UHMK1 PFN2 RPL41 VSTM2L RPL37A ANXA6 NDUFA11 NDRG4 RPL35 REPS2 LGALS1 THY1 ARPP19 MT-CO1 PGAM1 KLHDC3 COX6C MORF4L2 COX7C NAT8L PGK1 SNCB TUBA1A RPL31 ARL6IP1 SCOC SULT4A1 GDI1 PPP3CA RPS12 PPIA HOMER1 ELAVL2 MOXD1 STX1A CLU PTPRS SCN1A ARL6IP5 PLOD2 TUBB2A PTPRN DRAP1 HSP90AB1 SYNJ1 NDFIP1 GPX4 FTH1 RAPGEF5 CALM1 BEX1 SV2B NDUFB10 KCNH5 RPL38 CREG2 PLEKHD1 ATP6V0C RP11-20I23.1 ALDOA PLD3 ITGA6 SLIT1 ATP6V1C1 COX17 FKBP1A OLA1 ADAM23 PBXIP1 PKM PNKP SEPW1 EIF4A2 TMEM141 KLC1 MGST3 MRPS21 PCDH17 CD63 RBX1 CYFIP2 NUDT4 HMGCS1 PTGES3 NDUFB8 DPYSL2 NEFH TNFSF18 MT-ND2 PCDHA4 HINT1 NAPB PRNP CABP1 CNP ATP5G1 MYEOV2 GPATCH4 PNMAL1 AES TMEM59L MYOM2 CLIP2 UCHL1 SH3RF1 BEX4 UQCR11 SSTR2 ATP1B1 SUMO2 NDUFA13 YWHAH MT-ND4 PPM1A TCEAL2 HMGCR ETV1 TMLHE S100A6 CLIP3 HSPA4 NDFIP2 DNAJC5 RILPL2 SERF2 STMN2 NDUFS6 VPS35 TMEM130 PHYHIPL TSPAN7 APP PCSK1N NHP2L1 MAGED2 MARCKS FIGN BCAP31 DNM3 MSMO1 PJA2 PRUNE2 CTNNA2 ATP6V0E2 NDUFC2 IPCEF1 TOMM34 GAPDH TIMP2 GRINA MED10 BSG CCDC158 RPL13 EIF1B RXFP1 ATP6V1A WSB2 RAB11FIP5 PRDX1 GNG3 KISS1R SCN3B SELT MMD ATP5B TGOLN2 C1ORF95 MAP2K1 PDE1A CORO2B OLFM1 LIN7B STMN4 NEGR1 ENSA CPLX1 RELB IMMP1L RPL15 RORB NAP1L3 SCN1B KIF5A GNB1 SPTBN1 DMTN SLC6A17 ELAVL4 ISG15 PPP2R2B SSBP3 SLC24A2 ITM2B BCAT1 GNG2 DYNLT3 RANBP1 DCC FKBP1B SLC17A7 SCG2 PLCD1 NUAK1 KIFAP3 ATP6AP1 GRIN2A GDF10 C18ORF21 TOLLIP CADM3 GPNMB RAB7A WASF1 WISP1 SLC39A10 SOD1 SARAF ARPC5L ACP1 DNAJC6 ALG3 ACTR10 UBE2F PRDX5 P2RX6P SLC8A2 TRIM37 SQLE IFI6 EDF1 FAM163B GABRA5 PEX5L GUCY1A3 SLC7A8 TBR1 WASL NGRN VEGFA DAB2 ATP1A3 CCDC69 SLC7A5 ZBTB18 NRGN NDUFAF2 PNMAL2 GPR158 OPCML ENC1 YIPF3 NEFL TUBD1 SLC25A4 RPL39 KIF1A DNAJA1 CHCHD2 KIF25 TMX4 GABARAPL1 NREP C1D KIF3C CLPTM1 APBB1 RPL8 ATP1A1 NOV PGM2L1 WARS CMAS COA3 SERINC1 CD59 RPS6 BTBD10 RASGRP1 EGR1 PDP1 MLLT11 FIS1 FXYD7 NECAB1 RTN1 UBE2D2 MT-CO3 NFE2L1 LAMTOR5 ETFB GAP43 SNAP91 CAP2 ATP5J2 COX7A2L ARHGAP35 NDUFB1 ACTB GLDN LMO4 UBA1 RPL11 PGRMC1 CTNNB1 MAST3 SERPINI1 NELL2 PLCB2 NGEF ZMAT2 MRPL20 KLC2 ARF3 ZNF365 PAFAH1B2 PLCB1 HSP90AA1 SNCA LMO3 PPP2CA NDUFB5 COL5A3 QDPR IDS PSMB3 C18ORF32 DYNLRB1 BSCL2 RPS15 MTATP6P1 AC244489.1 MT-ATP6 PVALB LINC01296 RPL17-C18ORF32 RPS3A ATP6V1G2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND1 MT-ATP6 MT-ND4 RTN1 MT-CO2 SYT1 MTRNR2L12 ZNF385D SYTL2 TSHZ2 MAP1B SNAP25 SERINC1 SPARCL1 CDH8 NRGN MTRNR2L1 PTPRN PTCHD4 PGRMC1 ATP6V1B2 RPL13 CCDC25 TRIM37 TTN RPL3 DCC NDFIP1 SYNJ1 FBXL16 NDUFAF3 RPS27A SEZ6L2 RPL32 PCSK1N MT-ND2 SSBP3 ID2 COL6A1 NEUROD6 MT-ND5 DPYSL2 STMN1 PHF11 NRCAM BEX4 RPL31 RAB6B NAPB NEGR1 APP PI4KA GPR26 RPL21 TOLLIP CALM1 RPS2 RPL39 MTATP6P1 PRKACB PLD3 PTMA RPL37A UBE2E3 GRIN2A AP2B1 MT-ND3 PRKCB SNX10 NR1I3 CFH NHP2L1 HSPA4 CAMK4 PJA2 MAOB ATP1A1 CDK5R1 SH3GL2 CLU RPL17 CLPTM1 RPS3A NRIP3 GDE1 LPPR4 ARL6IP1 FAM84B ACRV1 CTNNA2 OCIAD1 SLC12A5 HOMER1 SLC39A10 GOT1 GDA EID1 RPS6 ATP1B2 PCDHA10 SERF2 PFDN1 SUSD4 COX5B SCN3B GAPDH NTNG1 GPM6A DNAJB9 ARL8B SPOCK1 ATP2B2 DYNLRB1 PLCXD2 MTRNR2L8 FOXP2 CLSTN2 SYNPR YWHAG PREPL NDUFS6 PEA15 MFSD2A OAT PODXL WBP2 NPTXR RAB3A WLS PCDHB4 CAPNS1 ITFG1 SYT13 LDB2 GAP43 CDC42SE2 GRINA SARAF ACTR10 YWHAQ GSTT1 MAPK8IP2 SOD1 LAGE3 ENO1 ITM2B HSP90AB1 SMAP2 RHEB NDRG4 OLFM2 ALCAM FXYD7 NOP10 PRKCE BAD SYT11 PPP2R2C RPL11 CNP UBA52 MT-CYB HTR1F SERPINF1 MRAS SUB1 PSMC1 GABRG1 RAB7A MAPRE2 OAZ1 SSPN PGAM1 INSIG1 DPY30 TM2D3 FXYD6 THBS4 CISD1 FAIM2 RAB1A ATP6AP2 ARL4C NECAB1 FAM131B NDUFA12 CLSTN1 PPP2CB NAP1L3 SIRPA RORB UBE2QL1 RHBDD2 MAGED1 VDAC1 PSD3 TMEM150C PEBP1 DKK3 SLC25A4 MORF4L1 ATP6V1A CADM2 COX6C HMGCR GPX4 YWHAB CERS6 ATP6V0E2 GNAQ TMEM130 PAQR8 MTPN PCDHA9 SCD NAP1L5 SPTBN1 HPRT1 IPCEF1 SEPW1 ZFAND5 PTPRZ1 EIF4A2 SV2B KIFAP3 TNNT2 PGK1 FTH1 RPL41 RPL17-C18ORF32 OXR1 SYN2 CNR1 ETV5 RTN4 DPY19L1 CDC37 MAP1A EFR3A YAF2 MAPK1 SLC38A1 RASGRF1 ATP5C1 STX1A CHN1 AP2M1 ANK1 RHOJ SNN TPPP SEZ6L PDZRN4 EGR3 CIAPIN1 TRHDE TXN THY1 ARL2BP ELAVL2 AK5 OPCML PRKCG PPIA CTU2 MORF4L2 RLIM SNAP91 ACTR1A IDS C14ORF132 SLC17A7 DNAJA1 TIMP2 RPL35 PTK2B SCG2 SYT17 SCOC OPA1 PLCH1 DCLK1 MAPRE3 ARFGAP2 RP11-20I23.1 RPL18A ATP6V0C MTRNR2L6 RPL6 NGRN ARF3 TUBB GPR98 LAMA2 PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 SYT1 MT-ATP6 MT-CO2 SNAP25 ARL6IP1 MAP1B STXBP1 SLC39A10 MT-CYB PNMA2 GPM6A ATP2B2 MTRNR2L1 PREPL MT-ND4 SKP1 FXYD6 OCIAD1 PPP3CA GDI1 ARPP19 TPD52 PEBP1 TSPYL1 EIF4A2 CHN1 BASP1 UCHL1 YWHAB RTN3 CADM2 RHEB SNCA NPTN CNTN1 TUBA1A TUBA1B SIRPA DHCR24 ATP1A1 EIF1B NRGN SPOCK1 RTN1 TUBB2A NUAK1 PJA2 ARL8B GAP43 PTMA WASF1 PRKACB ACTG1 MORF4L1 GAPDH CLU PPA1 ENO2 MT-ND1 PRKAR1B ACTB TESPA1 REPS2 MAPK1 CALM2 CKB PRNP ENC1 MT-ND3 MDH1 EGR1 ZBTB18 NDRG4 ATP1B1 ELAVL2 MTRNR2L6 QDPR PRKCB ITM2B LAGE3 RAB11A SNAP91 ANO3 SERINC3 KIFAP3 ADAM23 ATP5J2 TSPAN7 PGAM1 TMX4 NECAB1 KCNF1 BSN UBE2V2 SLC17A7 RPS12 VAMP2 TMSB4X RGS4 FAT3 RNF11 EDIL3 STMN1 PRDM8 NBL1 PTGDS CHP1 PHYHIP RORB BIRC5 ELAVL4 TUBA4A SLC9A6 NAT8L SCN7A IDS OAT KCNAB2 H2AFZ PNMAL1 HBA2 HOMER1 RAPGEF5 C1ORF52 D4S234E FTH1 NCAM2 GDA SLC12A5 NEFL NFIA EPDR1 CDC37 PPP3R1 ALCAM TRIM37 PDE1A GMFB HDLBP HCN1 SLC25A4 HMGCR CBX6 UBE2E3 EPB41L3 LAMTOR5 PPP2CB PIK3R1 ENSA GABRA1 SMAP2 WBP2 DIRAS1 CNTNAP5 CAMK2D DNAJB6 CPLX1 SYT3 PRKCG CALM3 NCALD CALM1 SLC8A2 DCC CHL1 COX7A2L EFR3A BAI2 STMN2 SLC38A1 PACSIN1 BEX4 HMGCS1 MAP4 NEGR1 TMTC1 NAPB UBQLN2 NDUFA1 ATP5E CITED2 MAPK8IP2 LDB2 CLIP3 ATP5I NEFM FIGN VPS35 PPP2CA YWHAG EIF1 EPHA6 WASL RPL13 PFN2 MTRNR2L12 NPTXR GNAQ RPL7 ATP6AP1 GPX4 CMAS FER1L4 PDP1 NAPA SRP9 C1ORF115 MT-ND2 HSP90AB1 CPNE8 GHITM ATP6V0D1 PPP2R2C NCDN C18ORF32 SYN2 TBR1 REEP5 WBP11 LCNL1 LMO4 LMBRD2 PHYHIPL PPP1R7 PDCD5 SUB1 PLCH1 OLFM1 MAP1A PCBP1 CAMKK2 THYN1 SYT4 CSDE1 BAG4 AKAP12 MORF4L2 NPTX1 ELMO1 PSAP RAB3C NDUFA5 AQP4 HSP90AA1 RFK SUSD4 ATP2B4 ABHD8 KLC1 CCK KRAS MTATP6P1 SHD PARM1 TPGS2 RP11-111M22.2 PTK2B C1ORF56 RASGRF1 SLC19A1 MPC2 NRIP3 PPP2R4 RPL36A NRSN2 TERF2IP FAIM2 YDJC SNX3 ARF3 RTN4 ATP5G1 IPCEF1 MTRNR2L8 TSPYL4 ARFGAP2 SYTL2 NGRN RP11-20I23.1 ATP6V0C RAB3B ZNF385D NUDT4 HLA-DQB1 HILPDA ATP6V1G2 MBOAT7 AC244489.1 PCDHGA10 PCDHGA5 PCDHGA6 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 RORB SNAP25 BASP1 TUBA1B CALM1 CALM2 MT-CO1 LMO4 FAIM2 CHN1 MT-CO2 RAB3B MT-CO3 MT-ND1 VPS35 PRKCB SARAF PKM PEBP1 HMP19 DCLK1 SYT1 TBC1D15 OAZ1 TRHDE RPL13A YWHAH NEGR1 FTH1 NDFIP1 PREPL MT-ND4L FAT3 USMG5 ACTG1 ATP1B1 TSPAN7 PSD3 SLC30A3 NRGN PPP3CA DCC MT-ND3 GABARAPL1 FARSA SPARCL1 CNTN1 HOMER1 PRKACB FAM127A CALM3 NDRG4 RTN3 HNRNPA1P40 ESCO2 CFH PCBP1 HSPA4 TMSB10 UBA1 EID1 SYN1 MT-CYB SNN MTRNR2L8 LMO3 RASGRF1 PTCHD4 OR6D1P MDH1 CXXC4 PTMA MTCH1 AES STAG3L5P YWHAQ PCSK1N SDCBP ARPP19 NECAB1 KCNA2 WASF1 GNAQ FSTL5 SEPW1 USP5 ARF1 SPCS2 MTPN NAPA TCEAL2 NDUFA5 OXR1 APLP1 NEFL DNAJB6 MRPL33 UQCRC2 SSBP3 RPL23A RPL36A HS6ST2 ATP9A RNF11 ZBTB18 RGS4 EGR1 ATP6V0E2 GAP43 PTPRN SYNJ1 CLPTM1 RPL26 ATP6V1B2 DPYSL2 KLC1 SLC38A11 LPPR4 TMSB4X CDH8 LAMA2 DGUOK C12ORF49 CHMP5 PTK2B ARL6IP1 RPS15 SLC22A17 PPIA PCDH8 MYEOV2 AP3S1 PEF1 HRH3 PPM1A SERP2 DNAJC5 CAPZB STX1A PNMA2 CLIP2 SYNPR ATP6AP2 SNX10 CBX6 PLCB1 GPM6A APP LYNX1 SEPT4 UBE2E3 EFR3A PMEPA1 STMN1 PCP4 VAMP2 UQCRH RTN4 MT-ATP6 SYT4 AP2M1 EPB41L3 DNAJB9 C19ORF43 RASGEF1B MTRNR2L1 YWHAG ATP6AP1 NAP1L2 GSKIP RAB6A EIF1 RPL35 MORF4L1 SMAP2 EIF1AX CLMN NDUFA12 COL6A1 RASGRF2 MAGED1 ATP1A1 LGI3 ANAPC13 TSPYL4 LDHB HN1 PCDH19 RPL38 VAMP1 SCN1B ZBBX TSC22D1 TPT1 MAP2K4 TMEM59L TOMM20 BIRC5 INA GPR158 PTPRT MTRNR2L12 C1S MAPRE3 FAM19A2 MAP1B YWHAB NUDT21 ANO3 SPTBN1 STMN2 PITHD1 TRPC3 MORF4L2 RPL39 HSP90AB1 REEP5 SYT13 SLC6A17 PACSIN1 TNNT2 NHP2L1 STXBP1 NCEH1 BSG ATP5J HSP90AA1 SSTR1 PHF11 NUDT4 PGK1 RP11-111M22.2 JAKMIP1 AC244489.1 RAB1A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 MT-CO1 MT-CO2 MT-CO3 MAP1B MTRNR2L1 MT-ATP6 SPARCL1 SYTL2 ARL6IP1 MT-ND4 SNAP25 RP11-219A15.1 TTN NECAB1 GPM6A RPL7 STMN1 SYT1 DNAJC21 ZNF385D RORB PIK3R1 DPYSL2 PJA2 NAPA MARCKS WASF1 PPP3CA TSPYL1 RGS4 SYT17 COX17 CHGB PRKAR1B SARAF PREPL YWHAG MT-ND1 SERINC1 SCN3B LMO4 MT-CYB STXBP1 UBB PLEKHD1 RPL21 MTRNR2L6 IDS FAIM2 SLIT1 TMA7 BASP1 TUBB2B TEX2 GOT2 SCAMP5 CA10 SNCB EIF1AX OLFM1 TUBA1A CCT5 AC244489.1 FBXL16 GUCY1B3 ATP6AP1 CPE EIF4G2 EPS15 CDC37 GABARAPL2 FAM219A ENC1 NDUFA4 SRP14 ONECUT2 CNR1 SLC12A5 MTRNR2L12 TUBB2A MEDAG HSP90AA1 AES PSMA7 PSD3 SEMA5A C1ORF115 INPP5F ACTG1 ARHGDIG WARS SLC9A6 SEPW1 ECM1 KCNH5 PRKAR1A SSTR1 YAF2 CHL1 SLC38A1 TUBA1B NDRG4 UBL5 NMNAT2 CLSTN1 SCD5 COL6A1 HRASLS5 MFSD6 IQCK TMEM158 TUBB4B PNMAL2 PNMA2 USP5 PLCB1 PITPNA CLU UCHL1 VSNL1 KLC1 APLP1 NDUFA5 IDI1 ETV5 LPPR4 ATOX1 SYN2 NEUROD2 FBXW11 FTL PCDH19 ACP1 PARM1 SEZ6L AP2M1 CLPTM1 CDK5R1 GUCY1A3 KCNC2 CD24 CREB5 RTN1 VGF BRK1 RNF208 ATP5I ELAVL4 NDFIP2 CXXC4 PLP1 SDF2L1 APP NAP1L3 ATP9A ARL4C MAP1LC3B SNCAIP NDUFV1 CLTC ATP1A1 PKM HS6ST3 TCEAL2 PRUNE2 ARPP19 C1S RPL13 TSPAN7 PTPRT LDB2 CADM3 RGS5 MGST3 STX1A UBA52 CALM1 NUAK1 NIPA1 TGOLN2 NPTXR CDH19 HMGCR FTH1 GRIN2A ACLY MORN2 NDUFB1 PDE1A RPL35 GDI1 AMIGO2 SCG2 KLHDC3 ELAVL2 SNRPN C11ORF31 GRIN1 RPL31 MTATP6P1 OR6D1P GABRA1 LMO3 FBXO8 NDUFB2 TMEM59L SLC39A10 SLC22A17 YWHAQ ITGA11 PLD3 HNRNPA1P40 ISCA1 NGRN ATP6V1G2 TUBB PCDHGA5 PCDHGA6 PCDHGA10 RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SYT1 MT-ND4 MT-CO2 MT-ND3 MT-CYB MT-ATP6 SNAP25 MT-ND2 CALM1 TUBA1B CHN1 TMSB4X TSC22D1 SPARCL1 RTN3 GPM6A MAP1B CALM2 PRKCB YWHAH MTATP6P1 HSP90AB1 NUAK1 ACTB NRGN RTN4 GDI1 GAPDH RTN1 RGS4 HSP90AA1 VSNL1 PJA2 VAMP2 ZBTB18 TSPAN7 PRKACB NGFRAP1 MT-ND1 OXR1 GABRA1 STMN1 PSD3 SERPINI1 TSPYL1 PGAM1 PPP3CA LMO4 SLC38A1 SERINC1 SEPW1 ACTG1 TMEM59L NAPB CLSTN1 TAGLN3 PAFAH1B2 STXBP1 OLFM1 CCK YWHAB EIF4A2 TRHDE RAB2A PSAP MTCH1 NREP SNAP91 OAZ1 CAP2 PRNP PTK2B NEGR1 DCLK1 NECAB1 CYFIP2 PNMA2 BEX1 CAMKK2 FTH1 ATP1A1 NDRG4 ENC1 SLC17A7 NDFIP1 TUBA1A BASP1 APLP1 GRIN2A NPTN MAPRE2 ATP1B1 CABP1 GAP43 SYNJ1 MAPK1 NRN1 PPP2CA YWHAZ TMSB10 CDK5R1 APP HTR2A MTRNR2L1 TOMM20 SV2B CREG2 DPP6 GOT1 PGRMC1 PEBP1 PREPL TOLLIP RORB VDAC3 TUBB4A SNCA PPIA CNTN1 CADM2 ZFAND5 NSF CEND1 CPE PKM PIK3R1 DIRAS1 NDFIP2 SNRPN CDK14 MDH1 EIF4G2 ATP5I SLIT1 ARL6IP1 YWHAG SPOCK1 CA10 SDCBP PFN2 GRIN1 GDA C1ORF115 SCG2 WASF1 TERF2IP TMEM35 UCHL1 YWHAQ ASAP1 CLU TPI1 NPTX1 UBE2V2 SLC30A3 SCAMP5 STUB1 NDUFS5 NAP1L2 PLCB1 RPL37A CKB SLC8A2 FGF12 SYN1 ENO2 EIF1AX PRKAR1A FAIM2 KIF5A PEA15 KCNV1 PDP1 SYTL2 RAB3A ATP6AP1 KLC1 TPD52 TMA7 NAP1L3 PCMT1 KCNC2 GABARAPL1 PPP2CB PIN1 IGSF21 PTMA ATP2B2 GPR158 UBQLN2 NCALD BSN ATP6V1C1 NCDN RAD23B RHEB DNAJC6 LINGO1 ALDOA FAM3C WBP2 SCN3B RAPGEF5 OCIAD1 CFL1 CTBP1 PLD3 PPP3CB ELMO1 DPYSL2 TSPYL4 EDIL3 AES CHL1 NEFL PRKCE SUMO2 WASL ITM2B SERINC3 STMN2 SYNGR1 GHITM RAB7A TCEB1 NAPA COPRS EIF1 ARPP19 ATP5A1 PGK1 SYNPR WDR47 EPHA6 FAT3 EID1 CAMK2G THY1 FAM19A2 POMP PTPRN SCD5 HK1 SKP1 INSIG1 SLC22A17 ID2 RHBDD2 TPRG1L RAB11A FXYD6 PRKAR1B AP3S1 ATP1A3 MT-ND4L MRPS7 GNAQ SYT5 CTNNB1 GPX4 AP2S1 FKBP1A RP11-20I23.1 ATP6V0C TRIB2 LAMA2 ATP5C1 RAP1GAP2 SNRPE NME1 NFE2L1 NAP1L5 AP2M1 CYC1 NDUFAF2 BEX4 DYNLL1 KIF21A KLHDC3 SYN2 ISCA1 RLIM TUBA4A VIPR2 NUDT21 UQCRC1 TMOD2 AZIN1 RPL31 DNM3 MAP2K1 PPDPF RPS2 PLEKHG1 C11ORF31 CTNND2 SULT4A1 MAP2K4 HOPX ENSA ETV5 CALM3 DDN NGEF SCN1A PLS3 ATP6V1B2 PNMAL1 LAGE3 HMGCS1 HMP19 FBXL16 TBR1 PNMA1 NDUFA13 PRDX1 HIGD1A SNCB PFKP ACTR1A ATP6AP2 SEZ6L2 NRCAM CD99L2 GUK1 PPP2R1A SKAP2 ARL8A ARHGDIG ELAVL4 RPL10A HOMER1 SLC6A17 SNN ACLY SYNGR3 FRMPD2 CRIM1 VDAC1 SCN2B SSBP3 PET100 MTRNR2L12 RPS6 PHYHIP SUB1 KCNAB2 SUMO3 RNF11 SLC9A6 UBE2E3 GNB1 CLTC BAG4 ANXA6 RAB11FIP5 ARF3 SPCS2 NDUFB1 PI4KA MAP7D1 UQCR10 FASN PITPNA HS6ST2 CSDE1 NCEH1 FTL BSG RAB3C ANO3 SLC39A10 COX4I1 STX1B SYT13 SMIM13 CTSD PPP2R4 ATP5B DSTN ETS2 TOMM70A NDUFB5 RASGRF1 MAPRE3 APLP2 MIF UROS MTPN SLC12A5 COX7C DNAJC5 RHOB UBB NEUROD6 CDC42SE2 FKBP8 VPS35 NPTXR UBE2QL1 ELAVL2 EPB41L3 UBA1 ARL6IP5 PCSK1 COX6B1 BHLHE40 TMX4 TUBB4B SPOCK2 MUM1L1 SH3GL2 UBE2M NDRG3 AURKAIP1 SERF2 KIF3C COL6A1 ACOT7 KCNK1 TUSC2 ATP6V1E1 RNASEK-C17ORF49 PSMD12 FAM219A HTRA1 SMYD2 ADAM23 CLDND1 PCDH19 LUZP2 ATP6V1A HCN2 MRPS21 PPP2R2C RPS3A CITED2 TMEM70 CAMK2D INPP5F NGRN ITM2C SLC25A22 NDUFA8 NR4A1 CDH13 CLIP2 APEH RPL39 RAN NDUFB10 ANXA7 ZNF503 RPL12 PCYT2 OPA1 PITHD1 RPS15 NMNAT2 NTNG1 UBE2N NHP2L1 PBX3 PTCHD4 GNG3 GSTP1 RPL26 NRF1 PRUNE2 FAM134A FIBIN UHMK1 HDDC2 CACNB1 TSHZ2 HSPA8 RAB6B NDUFB7 RNF208 TMEM230 MARCKS REEP5 BAALC CCDC85B USP5 RPL35 FKBP4 TIMP2 MAPK8IP2 VGF EHD3 RPL21 TM6SF1 RAB6A APOL6 GUCY1A3 MCHR2 PGM2L1 DUSP2 ZBBX EGR3 MRPL12 DPY19L1 CPLX1 CADPS2 LINC00087 MORF4L2 CAPNS1 HSPBP1 ADCYAP1 AKAP12 BCL6 KCNA2 PNMAL2 LDOC1 SH3BGRL2 LZTS1 RAB4A ARHGAP35 KLF10 UQCRQ UQCRB OPCML SMAP2 PINK1 PLCXD3 FBXW11 CMAS CHMP5 CDH8 ARL4C FAM174A UBA52 OLFM2 PAK1 PPP1R9B THOC7 CCDC124 DKK3 CORO2B OPN3 CD9 LDOC1L AQP4 FAM19A1 BCAS2 TMEM151A IDI1 RAB31 SOD1 GFRA2 CLTB JUNB TPPP TMEM130 NDUFAF3 MAP2K2 PCBP1 HS3ST5 SLC7A8 BSCL2 C19ORF53 LHFP AP1S1 LMO3 OPRM1 GPX3 RPL15 FSCN1 NELL1 ENOPH1 KRAS ENO1 SYT3 CDK17 ZNF365 RP11-195F19.5 LDB2 ATP5G3 BTBD10 GUCY1B3 ATP6V0E2 RAB5C EPS15 CAMK4 S100A6 GABRA5 CLPTM1 LYNX1 FBXO8 KIAA1045 C14ORF2 MAP4 NKIRAS1 CD59 NCOA4 ATP2B4 MAST3 CLIP3 RNF152 CDK5R2 TRIM35 SEZ6L LYSMD2 DNAJA1 C3ORF80 CYCS PTPRVP GRM3 FABP3 STK24 ATP6V1G2 PARM1 KITLG TRIM37 IDH3A CBLN4 STMN3 SPTBN1 RPL8 MED31 GOLIM4 FOXP2 CHRDL1 DLX1 PAQR8 B3GNT1 COL5A2 DLD RPS28 OAT CPNE4 PAM NHLH2 ARL8B PRDX2 ATP5O ATP6V0D1 PRDX3 EFR3A RPS4X WSB2 NR1I3 HPCA REPS2 NDUFB8 RAP2C SMOC1 SNX10 ATP9A RPL23A FBXL15 ARX SLC24A2 NELL2 PDCD5 COPE FAM189A2 SCN1B BEX2 SAP18 KCNMB4 ZBTB39 MT-ND5 TCEB2 FBXO2 FXYD7 ATP5E PELI3 DUSP6 PRKCG ZNF385A MYEOV2 TCEAL7 CRYM GADD45GIP1 RTN4R BEX5 ATP5G2 COPG1 HMGCR TPGS2 NEFM DAB2 COX5A RPL36A CLSTN2 EIF1B BCAP31 ANKRD18A JUND HDLBP ATP2A2 MLLT11 WBP11 C19ORF70 DNAJB9 CCDC184 ACTR10 PFN1 TNNT2 CDKN2D GPR26 PTPRT KREMEN2 MPC2 NEFH CPLX2 SNCG CHCHD2 DCTN1 FAM163B ATP6V1F CDC37 ALDOC DCC PCDH8 UQCR11 RAB1A RPL38 RPL13 NGB PACSIN1 PHLDB2 PSMA7 HPRT1 HNRNPH2 PIP5K1B TUBB FAM131B SYT11 USMG5 IGFBP2 UBC ARL2BP LINC01296 PSMB5 MZT2B NDUFC2 MBOAT7 TMSB4XP4 PSMC3 TESPA1 MIR6723 TEX2 SCOC COX6C CA11 NARS NDUFB3 MTRNR2L6 C7ORF50 CHMP4B COX17 TRPC3 MRFAP1 ETS1 SARAF DCTPP1 GTF2H2C_2 NUDT4 ARF5 CFH PSMB3 RPL13A PCDHA9 PCDHAC1 PCDHA4 PCDHA10 IDS\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CABP1 AC244489.1 OPRM1 RTN4 SNAP25 MAP1B TUBD1 ATP6AP2 MT-ND4 SEZ6L2 GRIN2A PEA15 PRUNE2 MT-ND2 NECAB1 PRKCB FAT3 GNAQ GHITM CYFIP2 HSP90AB1 TF TBC1D15 RAB3B SYTL2 ASAP1 GRIN1 HS6ST3 FER1L4 CDC42SE2 OAZ1 CLSTN2 LSM4 SERINC3 PPP3CA VDAC1 WBP11 PDLIM5 NEGR1 RORB MED10 STK24 DLD C9ORF16 GUCY1A3 TPT1 CISD1 MORF4L1 SLITRK1 PPP5D1 CAMK2G EIF4A2 LMO4 PDP1 TMX4 CDK14 EEF1A2 PAK1 CFL1 SYT1 DPYSL2 KLC1 SUMO2 CHL1 FLOT2 RAB1A TLN2 TXN BIRC5 SNCA ATP5A1 FOXP2 PEX5L TSC22D1 GDA RLIM EPHA6 UQCRB PRNP TRABD2A IDS TMEM70 RASGRP1 HOMER1 SARAF HSP90AA1 FAM3C NAT8L MAGED1 FAM163B CALM3 SERF2 NDUFB7 ZNF208 TUBA1B KIFAP3 WBP2 HTR2A AZIN1 SSBP3 TBCB RTN1 CLIP3 PDE1A PAFAH1B2 NDUFA5 NREP DYNC1I1 SYT11 MBP BASP1 FSCN1 ITFG1 LMO3 SYT13 MAP2K4 MT-ND3 MTRNR2L1 TUBA4A SLC6A17 RAB4A PTK2B PCBP1 KIF1A MZT1 GMFB MAP1A AES RPL37A THYN1 C7ORF50 TPPP RPL32 ACTR1A LINGO1 MAPK1 SCD5 NDUFS6 MT-CYB PRKACB PPP2R2C ZFAND5 NUAK1 STX1A KCNAB1 SHC4 RAB6A PCSK1N MT-ND1 TMOD2 RP11-219A15.1 ATP1A3 LAMA2 NUDT4 ALDOA NGRN PCDHGA10 PCDHGA5 PCDHGA6 OR6D1P\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 SNAP25 MT-ATP6 MT-ND2 CHN1 RP11-111M22.2 CALM1 MT-CO2 ARPP19 SERF2 OAZ1 DCLK1 MT-ND3 MT-ND4 LMO3 RAB3B CADM2 SERINC1 HSP90AB1 PNMA2 FTH1 TF HTR2A CA10 OLFM1 CBX6 STMN1 SNCA BIRC5 RPL11 NTNG1 KCNA2 NMNAT2 NDUFA8 OPRM1 CLTB YWHAH TRHDE ARL8A PRKCE CLIP3 MTRNR2L12 RXFP1 UBQLN2 AES GUCY1B3 NBL1 PHKG1 CERS6 SCAMP5 NCDN YAF2 ENO2 TUBA1A RORB ENKUR OPCML CNGB1 SERINC3 MTPN SCG2 CAMK4 PGRMC1 YWHAB PIK3R1 HPCA BEX1 PEA15 SYT1 GHITM FLOT2 UBE2E3 LAMA2 PPP3CA USP27X GABARAPL1 LMO4 C4ORF3 NDFIP1 PJA2 CADM3 ITM2B RASGRF2 CDK5R1 COPS8 SPP1 NREP TAGLN3 MT-ND5 RAB3C STMN3 FKBP8 NDUFA4 TMSB4X CHMP4B RTN1 RAB1A RAPGEF5 PEBP1 SH3RF1 TSPYL4 ATP1B1 TBCB SULT4A1 ATP6V1A MSMO1 PTPRQ ANO3 DNAJC6 CALM3 STX1A RPL39 HSP90AA1 CALM2 RPL37A NEGR1 TMSB10 ACTR6 COPRS MTRNR2L1 SERPINI1 PGM2L1 NDRG3 NAP1L2 PARM1 COX4I1 SLC38A11 RPL15 MARCKS PTK2B CXXC4 CHRNA6 CABP1 RAP2A NECAB1 ARPC5L ADAMTS9 ARHGDIA ATP2B2 BASP1 YWHAZ RCAN2 C7ORF50 APP VAMP2 TMX4 PIN1 KCNC2 NKAIN1 STXBP1 IDS OR6D1P GABARAP HNRNPA1P40 NR1I3 PLEKHD1 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'.", "role": "user" }, { "content": "cortical layer 4 excitatory neuron", "role": "assistant" } ]

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