LiteFold/GO · Datasets at Hugging Face

GO:0097742

97,742

de novo centriole assembly

biological_process

Centriole assembly in which a centriole arises de novo, rather than by replication from an existing centriole. This process may occur via different mechanisms. Examples include the deuterosome pathway in multicilated epithelial animal cells and formation of centrioles during parthenogenesis in some insects.

[ "GOC:cilia", "PMID:25047614", "PMID:25291643" ]

null

[ "acentriolar basal body biogenesis", "de novo basal body amplification", "de novo basal body assembly", "de novo basal body biogenesis", "de novo basal body generation", "de novo centriole amplification", "de novo ciliary basal body assembly", "multiciliation", "multiciliogenesis" ]

[ "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]

[]

[ "GO:0098534" ]

[]

[ "GO:0098534" ]

[]

pr

2016-10-19T15:13:50Z

false

true

1

GO:0097743

97,743

de novo centriole assembly via blepharoplast

biological_process

A de novo centriole assembly process observed in multi-ciliated sperm cells of some primitive land plants, and where centrioles are formed from a blepharoplast, ultimately giving rise to multiple cilia on the sperm surface.

[ "GOC:cilia", "PMID:25047614" ]

null

[ "multiciliation", "multiciliogenesis" ]

[ "RELATED", "RELATED" ]

[]

[ "GO:0097742" ]

[]

[ "GO:0097742" ]

[]

pr

2016-10-19T15:18:34Z

false

true

3

GO:0097744

97,744

renal urate salt excretion

biological_process

The elimination of urate salt or uric acid from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine.

[ "GOC:jl", "PMID:25287933", "PMID:3906799", "Wikipedia:Renal_physiology#Secretion" ]

null

[ "urate excretion", "urate salt excretion" ]

[ "BROAD", "BROAD" ]

[]

[ "GO:0097254" ]

[]

[ "GO:0097254" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22368\" xsd:anyURI" ]

pr

2016-10-27T11:35:59Z

false

true

6

GO:0097745

97,745

mitochondrial tRNA 5'-end processing

biological_process

The process in which the 5' end of a pre-tRNA molecule is converted to that of a mature tRNA in the mitochondrion.

[ "GOC:pf", "PMID:21307182", "PMID:26143376", "PMID:27484477" ]

null

[]

[ "GO:0000964", "GO:0090646", "GO:0099116" ]

[]

[ "GO:0000964", "GO:0090646", "GO:0099116" ]

[]

pr

2016-11-08T10:50:51Z

false

true

9

GO:0097746

97,746

blood vessel diameter maintenance

biological_process

Any process that modulates the diameter of blood vessels.

[ "GOC:pr" ]

null

[ "blood vessel diameter homeostasis", "regulation of blood vessel diameter", "regulation of blood vessel size", "regulation of vasodilatation", "regulation of vasodilation" ]

[ "EXACT", "EXACT", "RELATED", "RELATED", "RELATED" ]

[ "GO:0042312", "GO:0050880" ]

[]

[ "GO:0003018", "GO:0035296" ]

[ "part_of GO:0008015" ]

[ "part_of" ]

[ "GO:0008015" ]

[ "GO:0003018", "GO:0008015", "GO:0035296" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12253\" xsd:anyURI" ]

pr

2016-11-24T15:45:05Z

false

true

4

GO:0097747

97,747

RNA polymerase activity

molecular_function

Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template.

[ "GOC:pf" ]

null

[]

[ "GO:0016779", "GO:0140098" ]

[]

[ "GO:0016779", "GO:0140098" ]

[]

pr

2016-12-02T11:48:55Z

false

true

3

GO:0097748

97,748

3'-5' RNA polymerase activity

molecular_function

Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); the synthesis of RNA from ribonucleotide triphosphates in the presence of a nucleic acid template, via extension of the 5'-end.

[ "GOC:pf", "PMID:22456265", "PMID:27484477", "PMID:30917604" ]

null

[]

[ "RHEA:57528" ]

[ "GO:0097747" ]

[]

[ "GO:0097747" ]

[]

[ "skos:exactMatch RHEA:57528", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

pr

2016-12-02T11:51:31Z

false

true

9

GO:0097749

97,749

membrane tubulation

biological_process

A membrane organization process resulting in the formation of a tubular projection. This may face inwardly (as in tubular membrane invaginations) or outwardly (as in endosomal tubules).

[ "GOC:pr" ]

null

[]

[ "GO:0061024" ]

[]

[ "GO:0061024" ]

[]

pr

2016-12-21T12:32:24Z

false

true

5

GO:0097750

97,750

endosome membrane tubulation

biological_process

A membrane tubulation process occurring in an endosome membrane.

[ "GOC:bc", "GOC:PARL", "PMID:26911690" ]

null

[ "endosomal membrane tubulation" ]

[ "EXACT" ]

[]

[ "GO:0007032", "GO:0097749" ]

[]

[ "GO:0007032", "GO:0097749" ]

[]

pr

2016-12-21T12:33:09Z

false

true

2

GO:0097751

97,751

spore-bearing structure formation

biological_process

The process of generating a spore-bearing structure. A spore-bearing structure is an anatomical structure that produces new spores.

[ "GOC:di" ]

null

[ "sporangium formation", "sporophore formation" ]

[ "BROAD", "EXACT" ]

[]

[ "GO:0032502" ]

[ "part_of GO:0075259" ]

[ "part_of" ]

[ "GO:0075259" ]

[ "GO:0032502", "GO:0075259" ]

[]

pr

2017-01-11T13:55:24Z

false

true

4

GO:0097752

97,752

regulation of DNA stability

biological_process

Any process that modulates the stability of DNA.

[ "GOC:pr" ]

null

[]

[ "GO:0065008" ]

[]

[ "GO:0065008" ]

[]

pr

2017-01-24T11:23:01Z

false

true

9

GO:0097754

97,754

clathrin-mediated membrane bending

biological_process

A membrane bending process mediated by clathrin.

[ "GOC:pr", "Wikipedia:Membrane_curvature" ]

null

[]

[ "GO:0097753" ]

[ "has_part GO:0048268" ]

[ "has_part" ]

[ "GO:0048268" ]

[ "GO:0048268", "GO:0097753" ]

[]

pr

2017-01-25T16:38:42Z

false

true

8

GO:0097755

97,755

obsolete positive regulation of blood vessel diameter

biological_process

OBSOLETE. Any process that increases the diameter of blood vessels.

[ "GOC:pr" ]

This term was obsoleted because it corresponded to an existing term, GO:0042311 ; vasodilation.

[ "positive regulation of vasodilation" ]

[ "RELATED" ]

[]

pr

2017-02-08T15:33:21Z

true

8

GO:0097756

97,756

obsolete negative regulation of blood vessel diameter

biological_process

OBSOLETE. Any process that decreases the diameter of blood vessels.

[ "GOC:pr" ]

This term was obsoleted because it corresponded to an existing term, GO:0042310 ; vasocontriction.

[ "negative regulation of vasodilation" ]

[ "RELATED" ]

[]

pr

2017-02-08T15:36:16Z

true

9

GO:0098001

98,001

receptor-mediated bacteriophage reversible attachment to host cell

biological_process

Process by which a bacteriophage, using its tail fibers, spikes or a baseplate component, initially recognizes and binds to its specific receptor on the host cell surface. This process is reversible and allows the release of a bacteriophage without affecting infection.

[ "GOC:bm" ]

This process was historically defined by the release, by Waring blending or sonication, by dilution and centrifugation, or by filtration and washing, of infective virions from their complexes with cells, thus contrary to what is observed after irreversible adsorption.

[ "phage reversible adsorption", "reversible bacteriophage attachment, binding of host cell surface receptor" ]

[ "RELATED", "EXACT" ]

[]

[ "GO:0098671" ]

[]

[ "GO:0098671" ]

[]

bm

null

false

true

6

GO:0098002

98,002

receptor-mediated bacteriophage irreversible attachment to host cell

biological_process

The processes by which a bacteriophage initially commits to infection by binding the host receptor irreversibly. Disruption of the phage:cell complex at this step results in the loss of infective phage virions since the process is characterized by conformational changes of bacteriophage head and tail proteins and injec...

[ "GOC:bm" ]

null

[ "irreversible bacteriophage attachment, binding of host cell surface receptor", "phage irreversible adsorption" ]

[ "EXACT", "RELATED" ]

[]

[ "GO:0098670" ]

[]

[ "GO:0098670" ]

[]

bm

null

false

true

3

GO:0098003

98,003

viral tail assembly

biological_process

The aggregation, arrangement and bonding together of a set of components to form a virus tail.

[ "GOC:bm", "VZ:3955" ]

null

[ "bacteriophage tail assembly", "virus tail assembly" ]

[ "NARROW", "EXACT" ]

[]

[ "VZ:3955 \"Viral tail assembly\"" ]

[ "GO:0016032" ]

[ "part_of GO:0019068" ]

[ "part_of" ]

[ "GO:0019068" ]

[ "GO:0016032", "GO:0019068" ]

[]

bm

2012-07-18T16:01:59Z

false

true

9

GO:0098004

98,004

virus tail fiber assembly

biological_process

The aggregation, arrangement and bonding together of a set of components to form a virus tail fiber.

[ "GOC:bm", "VZ:3956" ]

null

[]

[ "VZ:3956 \"Viral tail fiber assembly\"" ]

[ "GO:0016032" ]

[ "part_of GO:0098003" ]

[ "part_of" ]

[ "GO:0098003" ]

[ "GO:0016032", "GO:0098003" ]

[]

bm

2012-07-18T16:08:15Z

false

true

6

GO:0098005

98,005

viral head-tail joining

biological_process

Process by which virus heads and tails are attached to each other.

[ "GOC:bm" ]

null

[ "phage head tail joining", "virus head-tail joining" ]

[ "NARROW", "EXACT" ]

[]

[ "GO:0016032" ]

[ "part_of GO:0019068" ]

[ "part_of" ]

[ "GO:0019068" ]

[ "GO:0016032", "GO:0019068" ]

[]

bm

2012-07-18T16:11:59Z

false

true

5

GO:0098006

98,006

viral DNA genome packaging, headful

biological_process

The encapsulation of the viral genome within the capsid where DNA is packaged into the capsid until the capsid is full.

[ "GOC:bm" ]

Generalized transducing phages usually use this mode of DNA packaging.

[ "phage headful packaging" ]

[ "NARROW" ]

[]

[ "GO:0019073" ]

[]

[ "GO:0019073" ]

[]

bm

2012-07-18T16:15:09Z

false

true

1

GO:0098009

98,009

viral terminase, large subunit

cellular_component

The part of the viral terminase complex that contains the translocase and endonuclease activities and allows the translocation of the phage DNA into the procapsid. The large subunit usually assembles as a heterooligomer with the small subunit.

[ "GOC:bm", "GOC:ch", "GOC:jh2", "PMID:18687036" ]

This term should only be used when the large subunit consists of more than one polypeptide.

[ "virus terminase, large subunit" ]

[ "EXACT" ]

[]

[ "GO:1902494" ]

[ "part_of GO:0043493" ]

[ "part_of" ]

[ "GO:0043493" ]

[ "GO:0043493", "GO:1902494" ]

[]

bm

2012-07-25T10:13:00Z

false

true

5

GO:0098015

98,015

virus tail

cellular_component

Part of the virion that may be used to recognize, attach and inject the viral genome and accessory proteins into the host cell.

[ "GOC:bm", "VZ:3958" ]

Many bacteriophages with dsDNA genomes, or Caudovirales, have a tail. The viral tail can be short (Podoviridae), long and non-contractile (Siphoviridae) or long and contractile (Myoviridae). The tail is the channel through which the phage genome is injected into the host bacterial cell.

[ "bacteriophage tail", "viral tail" ]

[ "NARROW", "RELATED" ]

[]

[ "VZ:3958 \"Viral tail protein\"" ]

[ "GO:0044423" ]

[]

[ "GO:0044423" ]

[]

bm

2012-07-18T17:04:46Z

false

true

8

GO:0098017

98,017

viral capsid, major subunit

cellular_component

The part of the viral capsid that comprises the most common capsomere type. For example, in a T=3 icosahedral capsid, which is composed of 12 pentameric and 20 hexameric capsomeres, the hexameric capsomeres are major subunits.

[ "GOC:bm" ]

null

[ "major capsomere", "major head protein" ]

[ "EXACT", "RELATED" ]

[]

[ "GO:0046727" ]

[]

[ "GO:0046727" ]

[]

bm

2012-07-19T11:21:21Z

false

true

1

GO:0098018

98,018

viral capsid, minor subunit

cellular_component

The part of the viral capsid that comprises the less common capsomere type. For example, in a T=3 icosahedral capsid, which is composed of 12 pentameric and 20 hexameric capsomeres, the pentameric capsomeres are minor subunits.

[ "GOC:bm" ]

null

[ "minor capsomere", "minor head protein" ]

[ "EXACT", "RELATED" ]

[]

[ "GO:0046727" ]

[]

[ "GO:0046727" ]

[]

bm

2012-07-19T11:28:18Z

false

true

2

GO:0098019

98,019

obsolete virus tail, major subunit

cellular_component

OBSOLETE. The part of the viral tail that comprises the most common subunit type.

[ "GOC:bm" ]

The reason for obsoletion is that these are not precise structures: major (most abundant) and minor subunits of viral tails vary in different viruses/phages.

[ "major tail protein" ]

[ "RELATED" ]

[]

bm

2012-07-19T11:32:55Z

true

9

GO:0098020

98,020

obsolete virus tail, minor subunit

cellular_component

OBSOLETE. The part of the viral tail that comprises the least common subunit type.

[ "GOC:bm" ]

The reason for obsoletion is that these are not precise structures: major (most abundant) and minor subunits of viral tails vary in different viruses/phages.

[ "bacteriophage minor protein subunit", "minor tail protein" ]

[ "NARROW", "RELATED" ]

[]

bm

2012-07-19T11:36:25Z

true

2

GO:0098021

98,021

viral capsid, decoration

cellular_component

Component of the virus capsid (head), located on the outer head surface. Involved in the stabilization of the head structure and usually non-essential.

[ "GOC:bm", "VZ:4398" ]

null

[ "decoration protein" ]

[ "RELATED" ]

[]

[ "VZ:4398 \"Capsid decoration protein\"" ]

[ "GO:0044423" ]

[ "part_of GO:0019028" ]

[ "part_of" ]

[ "GO:0019028" ]

[ "GO:0019028", "GO:0044423" ]

[]

bm

2012-07-19T11:52:53Z

false

true

2

GO:0098023

98,023

virus tail, tip

cellular_component

The basal end of the virus tail, which is used by the virus to attach to the host cell.

[ "GOC:bm" ]

null

[ "bacteriophage tail tip" ]

[ "NARROW" ]

[]

[ "GO:0044423" ]

[ "part_of GO:0098015" ]

[ "part_of" ]

[ "GO:0098015" ]

[ "GO:0044423", "GO:0098015" ]

[]

bm

2012-07-19T14:13:02Z

false

true

7

GO:0098024

98,024

virus tail, fiber

cellular_component

The fibrous region of the virus tail used to scan, recognize and attach to the host cell.

[ "GOC:bm", "VZ:4416" ]

For tailed bacteriophages, fibers typically bind to particular Lipopolysaccharide (LPS), polysaccharide or protein receptors on the cell surface.

[ "bacteriophage tail fiber" ]

[ "NARROW" ]

[]

[ "VZ:4416 \"Viral tail fiber protein\"" ]

[ "GO:0044423" ]

[ "part_of GO:0098015" ]

[ "part_of" ]

[ "GO:0098015" ]

[ "GO:0044423", "GO:0098015" ]

[]

bm

2012-07-19T14:14:50Z

false

true

3

GO:0098025

98,025

virus tail, baseplate

cellular_component

Multiprotein component at the distal (head) end of the virus tail to which fibers of tailed viruses may be attached.

[ "GOC:bm", "VZ:3957" ]

Tail fibers are often attached to the baseplate of Caudovirales (tailed bacteriophages with dsDNA genomes). Sometimes referred to as the tail tip or tip structure in Siphoviridae.

[ "bacteriophage baseplate", "tail structure", "tail tip" ]

[ "NARROW", "RELATED", "RELATED" ]

[]

[ "VZ:3957 \"Viral baseplate protein\"" ]

[ "GO:0044423" ]

[ "part_of GO:0098015" ]

[ "part_of" ]

[ "GO:0098015" ]

[ "GO:0044423", "GO:0098015" ]

[]

bm

2012-07-19T14:16:51Z

false

true

9

GO:0098026

98,026

virus tail, tube

cellular_component

The internal tube of the tail of some viruses. The virus tail tube is the channel for DNA ejection into the host cytoplasm.

[ "PMID:33188213", "VZ:3960" ]

Applies in particular the Myoviridae bacteriophages. Many bacteriophages with dsDNA genomes, or Caudovirales, have a tail. The viral tail can be short (Podoviridae), long and non-contractile (Siphoviridae) or long and contractile (Myoviridae). The tail is the channel through which the phage genome is injected into the ...

[ "bacteriophage tail tube" ]

[ "NARROW" ]

[]

[ "VZ:3960 \"Viral tail tube protein\"" ]

[ "GO:0044423" ]

[ "part_of GO:0098015" ]

[ "part_of" ]

[ "GO:0098015" ]

[ "GO:0044423", "GO:0098015" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29254\" xsd:anyURI" ]

bm

2012-07-19T14:21:28Z

false

true

3

GO:0098027

98,027

virus tail, sheath

cellular_component

The external contractile envelope of the tail of some viruses. Its contraction ensures ejection of the virus DNA into the host cytoplasm.

[ "GOC:bm", "VZ:3959" ]

null

[ "bacteriophage tail sheath" ]

[ "NARROW" ]

[]

[ "VZ:3959 \"Viral tail sheath protein\"" ]

[ "GO:0044423" ]

[ "part_of GO:0098015" ]

[ "part_of" ]

[ "GO:0098015" ]

[ "GO:0044423", "GO:0098015" ]

[]

bm

2012-07-19T14:23:27Z

false

true

4

GO:0098028

98,028

virus tail, shaft

cellular_component

The tube of the non-contractile tails of some viruses.

[ "GOC:bm" ]

This term applies in particular to the Siphoviridae bacteriophages, where the shaft is the channel for DNA translocation into the host cytoplasm.

[ "bacteriophage tail shaft" ]

[ "NARROW" ]

[]

[ "GO:0044423" ]

[ "part_of GO:0098015" ]

[ "part_of" ]

[ "GO:0098015" ]

[ "GO:0044423", "GO:0098015" ]

[]

bm

2012-07-19T14:24:28Z

false

true

3

GO:0098029

98,029

icosahedral viral capsid, spike

cellular_component

A short structure attached to an icosahedral virion capsid, and used for attachment to the host cell.

[ "GOC:bm" ]

null

[]

[ "GO:0044423" ]

[ "part_of GO:0019030" ]

[ "part_of" ]

[ "GO:0019030" ]

[ "GO:0019030", "GO:0044423" ]

[]

bm

2012-07-19T14:37:11Z

false

true

8

GO:0098030

98,030

icosahedral viral capsid, neck

cellular_component

A region of constriction located below the head and above the tail sheath of viruses with contractile tails (Myoviridae).

[ "GOC:bm" ]

null

[]

[ "GO:0044423" ]

[ "part_of GO:0019030" ]

[ "part_of" ]

[ "GO:0019030" ]

[ "GO:0019030", "GO:0044423" ]

[]

bm

2012-07-19T14:56:28Z

false

true

5

GO:0098031

98,031

icosahedral viral capsid, collar

cellular_component

A small disk located at the base of some icosahedral virus capsids.

[ "GOC:bm" ]

null

[]

[ "GO:0044423" ]

[ "part_of GO:0019030" ]

[ "part_of" ]

[ "GO:0019030" ]

[ "GO:0019030", "GO:0044423" ]

[]

bm

2012-07-19T15:01:12Z

false

true

8

GO:0098032

98,032

icosahedral viral capsid, collar fiber

cellular_component

A fiber attached to the collar structure of some icosahedral viral capsids.

[ "GOC:bm" ]

null

[]

[ "GO:0098022" ]

[ "part_of GO:0098031" ]

[ "part_of" ]

[ "GO:0098031" ]

[ "GO:0098022", "GO:0098031" ]

[]

bm

2012-07-19T15:05:16Z

false

true

7

GO:0098033

98,033

icosahedral viral capsid, neck fiber

cellular_component

A fiber attached to the neck at the base of some icosahedral viral capsids.

[ "GOC:bm" ]

null

[]

[ "GO:0098022" ]

[ "part_of GO:0098030" ]

[ "part_of" ]

[ "GO:0098030" ]

[ "GO:0098022", "GO:0098030" ]

[]

bm

2012-07-19T15:07:39Z

false

true

3

GO:0098035

98,035

viral DNA genome packaging via site-specific sequence recognition

biological_process

The encapsulation of the viral DNA genome within the capsid, which proceeds via cleavage of the viral DNA at specific sites by a viral terminase.

[ "GOC:bm" ]

null

[]

[ "GO:0019073" ]

[]

[ "GO:0019073" ]

[]

bm

2012-07-20T11:36:49Z

false

true

1

GO:0098036

98,036

viral DNA genome packaging, 3' extended cos packaging

biological_process

The encapsulation of the viral DNA genome within the capsid, which proceeds via cleavage of the viral DNA at specific sites to produce 3' protruding ends.

[ "GOC:bm" ]

null

[]

[ "GO:0098035" ]

[]

[ "GO:0098035" ]

[]

bm

2012-07-20T11:38:40Z

false

true

1

GO:0098037

98,037

viral DNA genome packaging, 5' extended cos packaging

biological_process

The encapsulation of the viral DNA genome within the capsid, which proceeds via cleavage of the viral DNA at specific sites to produce 5' protruding ends.

[ "GOC:bm" ]

null

[]

[ "GO:0098035" ]

[]

[ "GO:0098035" ]

[]

bm

2012-07-20T11:40:47Z

false

true

3

GO:0098038

98,038

non-replicative DNA transposition

biological_process

Process by which a transposable element is excised from the donor site and integrated at the target site without replication of the element. Also referred to as cut-and-paste transposition.

[ "GOC:bm", "PMID:2553270" ]

null

[ "cut-and-paste transposition", "non-replicative transposition, DNA-mediated" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0006313" ]

[]

[ "GO:0006313" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23746\" xsd:anyURI" ]

bm

2012-07-20T16:47:50Z

false

true

8

GO:0098039

98,039

replicative DNA transposition

biological_process

Process of transposition in which the existing element is replicated and one of the copies is excised and integrated at a new target site. Also referred to as copy-and-paste transposition.

[ "GOC:bm", "PMID:10540284", "PMID:1660177" ]

null

[ "copy-and-paste transposition", "replicative transposition, DNA-mediated", "transpositional DNA genome replication" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0006313" ]

[ "has_part GO:0006260" ]

[ "has_part" ]

[ "GO:0006260" ]

[ "GO:0006260", "GO:0006313" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23746\" xsd:anyURI" ]

bm

2012-07-20T16:52:02Z

false

true

6

GO:0098045

98,045

virus baseplate assembly

biological_process

The aggregation, arrangement and bonding together of a set of components to form a virus baseplate.

[ "GOC:bm" ]

null

[]

[ "GO:0016032" ]

[ "part_of GO:0098003" ]

[ "part_of" ]

[ "GO:0098003" ]

[ "GO:0016032", "GO:0098003" ]

[]

bm

2012-07-25T14:50:32Z

false

true

5

GO:0098046

98,046

type V protein secretion system complex

cellular_component

A complex of proteins that permits the translocation of proteins across the outer membrane via a transmembrane pore, formed by a beta-barrel, into the extracellular milieu or directly into host cells; the secreted proteins contain all the information required for translocation of an effector molecule through the cell e...

[ "GOC:bf", "GOC:bhm", "PMID:15119822", "PMID:15590781" ]

Note that the type II protein secretion system complex does not include components of the Sec or Tat pathways. For components of these pathways, consider annotating to 'cell envelope Sec complex ; GO:0031522' or 'TAT protein translocation system complex ; GO:0033281'.

[ "autotransporter system complex", "T5SS complex" ]

[ "NARROW", "EXACT" ]

[]

[ "GO:0032991" ]

[]

[ "GO:0032991" ]

[]

bf

2012-08-01T10:05:49Z

false

true

6

GO:0098061

98,061

viral capsid, internal space

cellular_component

The region of a virus contained within the capsid shell, and usually containing the viral genome and accessory proteins.

[ "GOC:bm" ]

null

[ "internal head protein" ]

[ "EXACT" ]

[]

[ "GO:0044423" ]

[]

[ "GO:0044423" ]

[]

bm

2012-08-01T12:12:47Z

false

true

8

GO:0098501

98,501

obsolete polynucleotide dephosphorylation

biological_process

OBSOLETE. The process of removing one or more phosphate groups from a polynucleotide.

[ "GOC:DOS" ]

This term was obsoleted because it represents a molecular function.

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22660\" xsd:anyURI" ]

dos

2013-09-18T14:49:10Z

true

4

GO:0098502

98,502

obsolete DNA dephosphorylation

biological_process

OBSOLETE. The process of removing one or more phosphate groups from a DNA molecule.

[ "GOC:DOS" ]

This term was obsoleted because it represents a molecular function.

[]

dos

2013-09-18T14:50:16Z

true

4

GO:0098503

98,503

obsolete DNA 3' dephosphorylation

biological_process

OBSOLETE. The process of removing a 3' phosphate group from a DNA molecule.

[ "GOC:DOS" ]

This term was obsoleted because it represents a molecular function, and not a specific coordinated process.

[]

dos

2013-09-18T14:51:17Z

true

1

GO:0098504

98,504

obsolete DNA 3' dephosphorylation involved in DNA repair

biological_process

OBSOLETE. Any 3' DNA dephosphorylation that is involved in the process of DNA repair.

[ "GOC:DOS", "PMID:11729194" ]

This term was obsoleted because it represents a molecular function, and not a specific coordinated process.

[]

dos

2013-09-18T14:52:15Z

true

5

GO:0098505

98,505

G-rich strand telomeric DNA binding

molecular_function

Binding to G-rich, single-stranded, telomere-associated DNA.

[ "PMID:11349150" ]

null

[]

[ "GO:0043047" ]

[]

[ "GO:0043047" ]

[]

dos

2013-09-23T13:16:24Z

false

true

1

GO:0098506

98,506

polynucleotide 3' dephosphorylation

biological_process

The process of removing one or more phosphate groups from the 3' end of a polynucleotide.

[ "GOC:dos" ]

null

[]

[ "GO:0006139", "GO:0016311", "GO:0043170" ]

[]

[ "GO:0006139", "GO:0016311", "GO:0043170" ]

[]

null

false

true

8

GO:0098507

98,507

polynucleotide 5' dephosphorylation

biological_process

The process of removing one or more phosphate groups from the 5' end of a polynucleotide.

[ "GOC:dos" ]

null

[]

[ "GO:0006139", "GO:0016311", "GO:0043170" ]

[]

[ "GO:0006139", "GO:0016311", "GO:0043170" ]

[]

null

false

true

4

GO:0098508

98,508

endothelial to hematopoietic transition

biological_process

The generation of hematopoietic stem cells from hemogenic endothelial cells by a process that includes tight-junction dissolution and loss of cell polarity followed by delamination from the endothelium.

[ "PMID:20154732", "PMID:22521721" ]

null

[]

[ "GO:0000902", "GO:0060232" ]

[]

[ "GO:0000902", "GO:0060232" ]

[]

dos

2013-09-24T15:20:39Z

false

true

4

GO:0098509

98,509

sensory perception of humidity

biological_process

The series of events required for an organism to detect some level of humidity in its environment, convert this detection into a molecular signal, and recognize and characterize the signal. This is a neurological process.

[ "PMID:18269908", "PMID:8650222" ]

Note, this is not classified under 'detection of chemical stimulus' as there are various potential mechanisms of hygroperception including detection of mechanical stimulus.

[ "hygrosensory perception" ]

[ "EXACT" ]

[]

[ "GO:0007600" ]

[]

[ "GO:0007600" ]

[]

dos

2013-09-25T13:52:27Z

false

true

7

GO:0098510

98,510

sensory perception of high humidity

biological_process

The series of events required for an organism to detect high environmental humidity, convert this detection into a molecular signal, and recognize and characterize the signal. This is a neurological process.

[ "PMID:18269908" ]

null

[]

[ "GO:0098509" ]

[]

[ "GO:0098509" ]

[]

dos

2013-09-25T13:57:27Z

false

true

6

GO:0098511

98,511

sensory perception of low humidity

biological_process

The series of events required for an organism to detect low environmental humidity, convert this detection into a molecular signal, and recognize and characterize the signal. This is a neurological process.

[ "PMID:18269908" ]

null

[]

[ "GO:0098509" ]

[]

[ "GO:0098509" ]

[]

dos

2013-09-25T14:02:02Z

false

true

9

GO:0098512

98,512

detection of humidity stimulus involved in sensory perception

biological_process

The series of events in which a humidity stimulus is received and converted into a molecular signal as part of the sensory perception of humidity.

[ "GOC:dos", "PMID:8650222" ]

null

[]

[ "GO:0050906", "GO:0098513" ]

[ "part_of GO:0098509" ]

[ "part_of" ]

[ "GO:0098509" ]

[ "GO:0050906", "GO:0098509", "GO:0098513" ]

[ "GO:0098513", "part_of GO:0098509" ]

[]

dos

2013-09-25T14:09:25Z

false

true

4

GO:0098513

98,513

detection of humidity

biological_process

The series of events in which a humidity stimulus is received and converted into a molecular signal.

[ "GOC:dos" ]

null

[]

[ "GO:0009581", "GO:0009582" ]

[]

[ "GO:0009581", "GO:0009582" ]

[]

dos

2013-09-25T14:11:13Z

false

true

7

GO:0098514

98,514

obsolete detection of high humidity stimulus involved in sensory perception

biological_process

OBSOLETE. The series of events in which a high humidity stimulus is detected and converted into a molecular signal as a part of the sensory detection of high humidity.

[ "GOC:dos", "PMID:18269908" ]

This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.

[]

[ "GO:0098510", "GO:0098516" ]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31254\" xsd:anyURI" ]

dos

2013-09-25T14:20:54Z

true

1

GO:0098515

98,515

obsolete detection of low humidity stimulus involved in sensory perception

biological_process

OBSOLETE. The series of events in which a low humidity stimulus is detected and converted into a molecular signal as a part of the sensory detection of low humidity.

[ "GOC:dos", "PMID:18269908" ]

This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.

[]

[ "GO:0098511", "GO:0098517" ]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31254\" xsd:anyURI" ]

dos

2013-09-25T14:24:29Z

true

9

GO:0098516

98,516

detection of high humidity

biological_process

The series of events in which high humidity is detected and converted into a molecular signal.

[ "GOC:dos" ]

null

[]

[ "GO:0098513" ]

[]

[ "GO:0098513" ]

[]

dos

2013-09-25T14:26:47Z

false

true

4

GO:0098517

98,517

detection of low humidity

biological_process

The series of events in which low humidity is detected and converted into a molecular signal.

[ "GOC:dos" ]

null

[]

[ "GO:0098513" ]

[]

[ "GO:0098513" ]

[]

dos

2013-09-25T14:27:18Z

false

true

9

GO:0098518

98,518

obsolete polynucleotide phosphatase activity

molecular_function

OBSOLETE. Catalysis of the reaction: phosphopolynucleotide + H2O = polynucleotide + phosphate.

[ "GOC:mah" ]

This term was obsoleted because it is an unnecessary grouping class.

[]

[ "GO:0046403", "GO:0140818" ]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23319\" xsd:anyURI" ]

dos

2013-09-26T11:02:35Z

true

6

GO:0098519

98,519

obsolete nucleotide phosphatase activity, acting on free nucleotides

molecular_function

OBSOLETE. Catalysis of the reaction: nucleotide + H2O = nucleotide + phosphate.

[ "GOC:dos" ]

This term was obsoleted because it represented an unnecessary grouping class.

[ "nucleotide phosphatase activity" ]

[ "EXACT" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23456\" xsd:anyURI" ]

dos

2013-09-26T11:04:45Z

true

9

GO:0098520

98,520

excitatory neuromuscular junction

cellular_component

The junction between the axon of a motor neuron and a muscle fiber. In response to the arrival of action potentials, the presynaptic button releases molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane of the muscle fiber, leading to...

[ "GOC:dos" ]

null

[]

[ "GO:0031594", "GO:0060076" ]

[]

[ "GO:0031594", "GO:0060076" ]

[]

dos

2013-10-14T12:02:51Z

false

true

8

GO:0098522

98,522

neuromuscular junction of skeletal muscle fiber

cellular_component

A neuromuscular junction in which the target muscle cell is a skeletal muscle fiber.

[ "GOC:dos" ]

In vertebrates, the term 'neuromuscular junction' is limited to synapses targeting skeletal muscle fibers - all of which are cholinergic and excitatory. Both inhibitory and excitatory neuromuscular junctions exist in invertebrates, utilizing a range of neurotransmitters including glutamate, GABA and 5-HT.

[]

[ "GO:0098520", "GO:0098523", "GO:0098981" ]

[]

[ "GO:0098520", "GO:0098523", "GO:0098981" ]

[]

dos

2013-10-14T12:04:32Z

false

true

2

GO:0098523

98,523

neuromuscular junction of myotube

cellular_component

A neuromuscular junction in which the target muscle cell is a myotube.

[ "GOC:dos" ]

In vertebrates, the term 'neuromuscular junction' is limited to synapses targeting the myotubes of skeletal muscle (AKA skeletal muscle fibers). Neuromuscular junctions targeting other muscle cell types exist in invertebrates such as the mononucleate somatic muscles of nematodes.

[]

[ "GO:0031594" ]

[]

[ "GO:0031594" ]

[]

dos

2013-10-14T12:05:12Z

false

true

9

GO:0098524

98,524

neuromuscular junction of somatic muscle myotube

cellular_component

A neuromuscular junction in which the target muscle cell is a somatic muscle myotube, such as an arthropod somatic muscle cell.

[ "GOC:dos" ]

null

[]

[ "GO:0098523", "GO:0098527" ]

[]

[ "GO:0098523", "GO:0098527" ]

[]

dos

2013-10-14T12:05:43Z

false

true

1

GO:0098525

98,525

excitatory neuromuscular junction of somatic myotube

cellular_component

A neuromuscular junction that functions in the excitation of somatic muscle myotubes, such as an arthropod somatic muscle cells.

[ "GOC:dos" ]

null

[]

[ "GO:0098520", "GO:0098524" ]

[]

[ "GO:0098520", "GO:0098524" ]

[]

dos

2013-10-14T12:06:08Z

false

true

7

GO:0098526

98,526

inhibitory neuromuscular junction of somatic myotube

cellular_component

A neuromuscular junction that functions in the inhibition of somatic muscle myotube contraction. Examples of somatic muscle myotubes include the somatic muscle cells of arthropods.

[ "GOC:dos" ]

null

[]

[ "GO:0098521", "GO:0098524" ]

[]

[ "GO:0098521", "GO:0098524" ]

[]

dos

2013-10-14T12:06:43Z

false

true

3

GO:0098528

98,528

skeletal muscle fiber differentiation

biological_process

The process in which a relatively unspecialized cell acquires specialized features of a skeletal muscle fiber cell. Skeletal muscle fiber differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual skeletal muscle fibers fuse to form bigge...

[ "GOC:dos" ]

null

[]

[ "GO:0014902", "GO:0035914" ]

[]

[ "GO:0014902", "GO:0035914" ]

[]

dos

2013-10-15T14:00:34Z

false

true

8

GO:0098529

98,529

neuromuscular junction development, skeletal muscle fiber

biological_process

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a neuromuscular junction that targets a skeletal muscle fiber.

[ "GOC:mtg_OBO2OWL_2013" ]

null

[]

[ "GO:0007528" ]

[ "part_of GO:0048741" ]

[ "part_of" ]

[ "GO:0048741" ]

[ "GO:0007528", "GO:0048741" ]

[]

null

false

true

5

GO:0098530

98,530

positive regulation of strand invasion

biological_process

Any process that increases the rate, frequency or extent of strand invasion. Strand invasion is the process in which the nucleoprotein complex (composed of the broken single-strand DNA and the recombinase) searches and identifies a region of homology in intact duplex DNA. The broken single-strand DNA displaces the like...

[ "GOC:dos", "GOC:dph", "GOC:elh", "GOC:tb" ]

null

[ "positive regulation of D-loop biosynthesis", "positive regulation of D-loop formation", "positive regulation of Rad51-mediated strand invasion" ]

[ "RELATED", "RELATED", "EXACT" ]

[]

[ "GO:0051054", "GO:0060542" ]

[ "positively_regulates GO:0042148" ]

[ "positively_regulates" ]

[ "GO:0042148" ]

[ "GO:0042148", "GO:0051054", "GO:0060542" ]

[ "GO:0065007", "positively_regulates GO:0042148" ]

[]

dos

2013-10-16T12:15:59Z

false

true

2

GO:0098531

98,531

ligand-modulated transcription factor activity

molecular_function

A DNA-binding transcription factor activity regulated by binding to a ligand and that modulates the transcription of specific genes and gene sets. Examples include the lac and trp repressors in E.coli and steroid hormone receptors.

[ "GOC:dos", "PMID:25568920", "PMID:8735275" ]

For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.

[ "direct ligand regulated sequence-specific DNA binding transcription factor activity", "ligand-activated transcription factor activity", "transcription factor activity, direct ligand regulated sequence-specific DNA binding" ]

[ "EXACT", "NARROW", "EXACT" ]

[]

[ "GO:0003700" ]

[]

[ "GO:0003700" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29176\" xsd:anyURI" ]

dos

2013-10-17T15:51:30Z

false

true

5

GO:0098532

98,532

obsolete histone H3-K27 trimethylation

biological_process

OBSOLETE. The modification of histone H3 by addition of three methyl groups to lysine at position 27 of the histone.

[ "PMID:19270745" ]

This term was obsoleted because it represents a molecular function.

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24294\" xsd:anyURI" ]

dos

2013-10-18T14:11:17Z

true

3

GO:0098533

98,533

ATPase dependent transmembrane transport complex

cellular_component

A transmembrane protein complex that functions in ATPase dependent active transport across a membrane.

[ "GOC:dos" ]

The location of this complex is implicit in its activity, so its location is asserted as a regular relationship rather than as a part of an intersection.

[]

[ "GO:1902495" ]

[]

[ "GO:1902495" ]

[]

dos

2013-10-22T12:12:52Z

false

true

2

GO:0098534

98,534

centriole assembly

biological_process

A cellular process that results in the assembly of one or more centrioles.

[ "GOC:dos", "PMID:24075808" ]

null

[]

[ "GO:0031023", "GO:0140694" ]

[]

[ "GO:0031023", "GO:0140694" ]

[]

dos

2013-10-22T15:55:22Z

false

true

1

GO:0098535

98,535

de novo centriole assembly involved in multi-ciliated epithelial cell differentiation

biological_process

Centriole assembly in which a centriole arises de novo by a process involving an electron-dense structure known as a deuterosome, rather than by duplication of an existing centriole, and occurring as part of multi-ciliated epithelial cell differentiation.

[ "GOC:cilia", "GOC:dos", "PMID:24075808", "PMID:5111878", "PMID:5661997" ]

In most eukaryotic cells, 'centriole' (GO:0005814) and 'ciliary basal body' (GO:0036064) represent a common entity that cycles through its function in cell division, then ciliogenesis, then cell division again. However, these structures are modified extensively as they transition into each other, and may contain differ...

[ "centriole amplification", "de novo centriole assembly", "de novo centriole assembly via deuterosome", "deuterosomal basal body biogenesis", "deuterosome pathway", "deuterosome-mediated centriole biogenesis", "multiciliation", "multiciliogenesis" ]

[ "RELATED", "BROAD", "EXACT", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]

[]

[ "GO:0097742" ]

[ "part_of GO:1903251" ]

[ "part_of" ]

[ "GO:1903251" ]

[ "GO:0097742", "GO:1903251" ]

[ "GO:0097742", "part_of GO:1903251" ]

[]

dos

2013-10-22T16:03:13Z

false

true

3

GO:0098536

98,536

deuterosome

cellular_component

A spherical, electron dense, cytoplasmic structure that is involved in de novo assembly of centrioles.

[ "GOC:cilia", "GOC:dos", "PMID:24075808", "PMID:25047614", "PMID:5661997" ]

null

[]

[ "GO:0043232" ]

[]

[ "GO:0043232" ]

[]

dos

2013-10-22T16:21:19Z

false

true

6

GO:0098537

98,537

obsolete lobed nucleus

cellular_component

OBSOLETE. Nucleus with two or more lobes connected by a thin filament that contains no internal chromatin. Examples include the nuclei of mature basophils, eosinophils and neutrophils in mice and humans.

[ "GOC:dos", "GOC:tfm" ]

This term was obsoleted because it does not correspond to a specific type of nucleus, it is a morphologically different nucleus present in certain cell types.

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20764\" xsd:anyURI" ]

dos

2013-10-22T18:31:36Z

true

1

GO:0098538

98,538

lumenal side of transport vesicle membrane

cellular_component

The leaflet of a transport vesicle membrane that faces the lumen, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab" ]

null

[ "internal side of transport vesicle membrane" ]

[ "EXACT" ]

[]

[ "GO:0098576" ]

[ "part_of GO:0030658" ]

[ "part_of" ]

[ "GO:0030658" ]

[ "GO:0030658", "GO:0098576" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-10-24T11:43:55Z

false

true

8

GO:0098539

98,539

cytoplasmic side of transport vesicle membrane

cellular_component

The leaflet of the transport vesicle membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab" ]

null

[ "external side of transport vesicle membrane" ]

[ "EXACT" ]

[]

[ "GO:0098562" ]

[ "part_of GO:0030658" ]

[ "part_of" ]

[ "GO:0030658" ]

[ "GO:0030658", "GO:0098562" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-10-24T11:48:07Z

false

true

2

GO:0098540

98,540

lumenal side of trans-Golgi network transport vesicle membrane

cellular_component

The leaflet of a trans-Golgi network transport vesicle membrane that faces the lumen, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab" ]

null

[ "internal side of trans-Golgi network transport vesicle membrane" ]

[ "RELATED" ]

[]

[ "GO:0098538" ]

[ "part_of GO:0012510" ]

[ "part_of" ]

[ "GO:0012510" ]

[ "GO:0012510", "GO:0098538" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-10-24T11:55:02Z

false

true

1

GO:0098541

98,541

cytoplasmic side of trans-Golgi network transport vesicle membrane

cellular_component

The leaflet of the trans-Golgi network transport vesicle membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab" ]

null

[ "external side of trans-Golgi network transport vesicle membrane" ]

[ "EXACT" ]

[]

[ "GO:0098539" ]

[ "part_of GO:0012510" ]

[ "part_of" ]

[ "GO:0012510" ]

[ "GO:0012510", "GO:0098539" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-10-24T11:56:30Z

false

true

9

GO:0098543

98,543

detection of other organism

biological_process

The series of events in which a stimulus from another organism is received and converted into a molecular signal.

[ "GOC:dos" ]

null

[ "recognition of other organism during symbiotic interaction", "recognition of other organism involved in symbiotic interaction" ]

[ "NARROW", "NARROW" ]

[ "GO:0051824" ]

[]

[ "GO:0051707", "GO:0098581" ]

[]

[ "GO:0051707", "GO:0098581" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/17977\" xsd:anyURI" ]

dos

2013-11-11T14:28:54Z

false

true

5

GO:0098544

98,544

maintenance of protein complex location

biological_process

Any process in which a protein complex is maintained in a location and prevented from moving elsewhere. These include sequestration, stabilization to prevent transport elsewhere and the active retrieval of protein complexes that move away.

[ "GOC:dos" ]

null

[]

[ "GO:0051235" ]

[]

[ "GO:0051235" ]

[]

dos

2013-11-15T18:20:16Z

false

true

9

GO:0098545

98,545

maintenance of protein complex location in cytoplasm

biological_process

Any process in which a protein complex is maintained in a specific location within the cytoplasm and is prevented from moving elsewhere.

[ "GOC:dos" ]

null

[]

[ "GO:0051651", "GO:0098544" ]

[ "occurs_in GO:0005737" ]

[ "occurs_in" ]

[ "GO:0005737" ]

[ "GO:0005737", "GO:0051651", "GO:0098544" ]

[]

dos

2013-11-15T20:49:15Z

false

true

2

GO:0098547

98,547

lumenal side of Golgi membrane

cellular_component

The leaflet of the Golgi membrane that faces the lumen, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0098576" ]

[ "part_of GO:0000139" ]

[ "part_of" ]

[ "GO:0000139" ]

[ "GO:0000139", "GO:0098576" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-03T10:44:23Z

false

true

6

GO:0098548

98,548

cytoplasmic side of Golgi membrane

cellular_component

The leaflet of the Golgi membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0098562" ]

[ "part_of GO:0000139" ]

[ "part_of" ]

[ "GO:0000139" ]

[ "GO:0000139", "GO:0098562" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-03T10:49:33Z

false

true

2

GO:0098549

98,549

somatic ring canal

cellular_component

A stable intercellular bridge between somatic cells. Examples include the intercellular bridges between ovarian follicle cells in insects and between imaginal disc cells in insects.

[ "GOC:dos", "PMID:22135360", "PMID:670316" ]

null

[]

[ "GO:0045171" ]

[]

[ "GO:0045171" ]

[]

null

false

true

5

GO:0098550

98,550

lumenal side of early endosome membrane

cellular_component

The leaflet of the early endosome membrane that faces the lumen, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:lr" ]

null

[ "internal leaflet of early endosome membrane", "internal side of early endosome membrane" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0098565" ]

[ "part_of GO:0031901" ]

[ "part_of" ]

[ "GO:0031901" ]

[ "GO:0031901", "GO:0098565" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

null

false

true

5

GO:0098552

98,552

side of membrane

cellular_component

A cellular component consisting of one leaflet of a membrane bilayer and any protein embedded or anchored in it or attached to its surface.

[ "GOC:dos" ]

null

[]

[ "GO:0110165" ]

[ "has_part GO:0097478", "part_of GO:0016020" ]

[ "has_part", "part_of" ]

[ "GO:0097478", "GO:0016020" ]

[ "GO:0016020", "GO:0097478", "GO:0110165" ]

[]

dos

2013-12-03T11:28:04Z

false

true

1

GO:0098553

98,553

lumenal side of endoplasmic reticulum membrane

cellular_component

The leaflet of the endoplasmic reticulum membrane that faces the lumen, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0098576" ]

[ "part_of GO:0005789" ]

[ "part_of" ]

[ "GO:0005789" ]

[ "GO:0005789", "GO:0098576" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-03T12:08:37Z

false

true

3

GO:0098554

98,554

cytoplasmic side of endoplasmic reticulum membrane

cellular_component

The leaflet of the endoplasmic reticulum membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0098562" ]

[ "part_of GO:0005789" ]

[ "part_of" ]

[ "GO:0005789" ]

[ "GO:0005789", "GO:0098562" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-03T12:09:47Z

false

true

3

GO:0098555

98,555

lumenal side of rough endoplasmic reticulum membrane

cellular_component

The leaflet of the rough endoplasmic reticulum membrane that faces the lumen, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0098553" ]

[ "part_of GO:0030867" ]

[ "part_of" ]

[ "GO:0030867" ]

[ "GO:0030867", "GO:0098553" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-03T12:13:24Z

false

true

3

GO:0098556

98,556

cytoplasmic side of rough endoplasmic reticulum membrane

cellular_component

The leaflet of the rough endoplasmic reticulum membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0098554" ]

[ "part_of GO:0030867" ]

[ "part_of" ]

[ "GO:0030867" ]

[ "GO:0030867", "GO:0098554" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-03T12:15:44Z

false

true

3

GO:0098557

98,557

cytoplasmic side of smooth endoplasmic reticulum membrane

cellular_component

The leaflet of the smooth endoplasmic reticulum membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0098554" ]

[ "part_of GO:0030868" ]

[ "part_of" ]

[ "GO:0030868" ]

[ "GO:0030868", "GO:0098554" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-03T12:17:58Z

false

true

5

GO:0098558

98,558

lumenal side of smooth endoplasmic reticulum membrane

cellular_component

The leaflet of the smooth endoplasmic reticulum membrane that faces the lumen, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0098553" ]

[ "part_of GO:0030868" ]

[ "part_of" ]

[ "GO:0030868" ]

[ "GO:0030868", "GO:0098553" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-03T12:19:28Z

false

true

3

GO:0098559

98,559

cytoplasmic side of early endosome membrane

cellular_component

The leaflet of the early endosome membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:lr" ]

In GO, 'external side' still refers to part of the membrane and does not refer to components beyond (outside of) the membrane.

[ "external leaflet of early endosome membrane", "external side of early endosome membrane" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0010009" ]

[ "part_of GO:0031901" ]

[ "part_of" ]

[ "GO:0031901" ]

[ "GO:0010009", "GO:0031901" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

null

false

true

8