LiteFold/GO · Datasets at Hugging Face

GO:0098560

98,560

cytoplasmic side of late endosome membrane

cellular_component

The leaflet of the late endosome membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:lr" ]

In GO, 'external side' still refers to part of the membrane and does not refer to components beyond (outside of) the membrane.

[ "external leaflet of late endosome membrane", "external side of late endosome membrane" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0010009" ]

[ "part_of GO:0031902" ]

[ "part_of" ]

[ "GO:0031902" ]

[ "GO:0010009", "GO:0031902" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

null

false

true

4

GO:0098561

98,561

methyl accepting chemotaxis protein complex

cellular_component

A transmembrane protein complex that consists of multiple methyl-accepting chemoreceptor protein subunits, a histidine kinase and a connector protein and which functions in the regulation of flagellar rotary motor activity in response to an external chemical stimulus.

[ "GOC:dos", "PMID:1326408", "PMID:15802240" ]

A number of complexes of this class are found in E.coli.

[]

[ "GO:0032991" ]

[]

[ "GO:0032991" ]

[]

null

false

true

3

GO:0098562

98,562

cytoplasmic side of membrane

cellular_component

The leaflet of a membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:dos" ]

null

[]

[ "GO:0098552" ]

[]

[ "GO:0098552" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-12T11:21:30Z

false

true

6

GO:0098563

98,563

obsolete intrinsic component of synaptic vesicle membrane

cellular_component

OBSOLETE. The component of the synaptic vesicle membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.

[ "GOC:dos" ]

This term was obsoleted because it represents protein topology, not a cellular component.

[]

[ "GO:0030672" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23424\" xsd:anyURI" ]

null

true

7

GO:0098564

98,564

trans-Golgi network transport vesicle lumen

cellular_component

The volume enclosed within the membrane of a trans-Golgi network transport vesicle.

[ "GOC:dos" ]

null

[]

[ "GO:0005796", "GO:0098566" ]

[ "part_of GO:0030140" ]

[ "part_of" ]

[ "GO:0030140" ]

[ "GO:0005796", "GO:0030140", "GO:0098566" ]

[]

null

false

true

3

GO:0098566

98,566

transport vesicle lumen

cellular_component

The volume enclosed within the membrane of a transport vesicle.

[ "GOC:dos" ]

null

[]

[ "GO:0060205" ]

[ "part_of GO:0030133" ]

[ "part_of" ]

[ "GO:0030133" ]

[ "GO:0030133", "GO:0060205" ]

[]

null

false

true

4

GO:0098567

98,567

periplasmic side of plasma membrane

cellular_component

The leaflet of the plasma membrane that faces the periplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:dos" ]

null

[]

[ "GO:0009897" ]

[]

[ "GO:0009897" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2013-12-19T09:31:30Z

false

true

6

GO:0098568

98,568

external side of mycolate outer membrane

cellular_component

The leaflet of the mycolate outer membrane that faces the periplasm of the cell, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:dos", "PMID:18316738", "PMID:18567661" ]

null

[]

[ "GO:0031240" ]

[]

[ "GO:0031240" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

null

false

true

6

GO:0098569

98,569

internal side of mycolate outer membrane

cellular_component

The leaflet of the mycolate outer membrane that faces the cell wall peptidoglycan, including any protein embedded in, attached to, or peripherally associated with it. It is rich in long-chain mycolic acids (hydroxylated branched-chain fatty acids) that are covalently linked to the cell wall peptidoglycan via an arabino...

[ "GOC:dos", "PMID:18316738", "PMID:18567661" ]

null

[]

[ "GO:0098552" ]

[]

[ "GO:0098552" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

null

false

true

4

GO:0098570

98,570

stromal side of plastid inner membrane

cellular_component

The leaflet of the plastid inner membrane that faces the stroma, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:dos" ]

null

[]

[ "GO:0098552" ]

[ "part_of GO:0009528" ]

[ "part_of" ]

[ "GO:0009528" ]

[ "GO:0009528", "GO:0098552" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

null

false

true

2

GO:0098572

98,572

stromal side of plastid thylakoid membrane

cellular_component

The leaflet of the plastid thylakoid membrane that faces the stroma, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:dos" ]

null

[]

[ "GO:0098552" ]

[ "part_of GO:0055035" ]

[ "part_of" ]

[ "GO:0055035" ]

[ "GO:0055035", "GO:0098552" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

null

false

true

1

GO:0098573

98,573

obsolete intrinsic component of mitochondrial membrane

cellular_component

OBSOLETE. The component of the mitochondrial membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.

[ "GOC:dos" ]

This term was obsoleted because it represents protein topology, not a cellular component.

[ "intrinsic to mitochondrial membrane" ]

[ "NARROW" ]

[]

[ "GO:0031966" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23424\" xsd:anyURI" ]

null

true

7

GO:0098574

98,574

cytoplasmic side of lysosomal membrane

cellular_component

The leaflet of the lysosomal membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[ "external leaflet of lysosomal membrane", "external side of lysosomal membrane" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0098562" ]

[ "part_of GO:0005765" ]

[ "part_of" ]

[ "GO:0005765" ]

[ "GO:0005765", "GO:0098562" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

null

false

true

5

GO:0098575

98,575

lumenal side of lysosomal membrane

cellular_component

The leaflet of the lysosomal membrane that faces the lumen, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:dos" ]

null

[ "internal leaflet of lysosomal membrane", "internal side of lysosomal membrane" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0098576" ]

[ "part_of GO:0005765" ]

[ "part_of" ]

[ "GO:0005765" ]

[ "GO:0005765", "GO:0098576" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

null

false

true

7

GO:0098577

98,577

inactive sex chromosome

cellular_component

A sex chromosome that has been inactivated.

[ "GOC:dos" ]

null

[ "inactivated sex chromosome" ]

[ "EXACT" ]

[]

[ "GO:0000803" ]

[]

[ "GO:0000803" ]

[]

null

false

true

4

GO:0098578

98,578

condensed chromatin of inactivated sex chromosome

cellular_component

A condensed form of chromatin that is associated with an inactivated sex chromosome and which is responsible for its inactivation.

[ "GOC:dos" ]

null

[]

[ "GO:0001739" ]

[ "part_of GO:0098577" ]

[ "part_of" ]

[ "GO:0098577" ]

[ "GO:0001739", "GO:0098577" ]

[ "GO:0000792", "part_of GO:0098577" ]

[]

null

false

true

9

GO:0098579

98,579

active sex chromosome

cellular_component

A sex chromosome that has not been inactivated.

[ "GOC:dos" ]

null

[]

[ "GO:0000803" ]

[]

[ "GO:0000803" ]

[]

null

false

true

8

GO:0098580

98,580

obsolete chromatin of active sex chromosome

cellular_component

OBSOLETE. Chromatin that is part of an active sex chromosome.

[ "GOC:dos", "PMID:23816838" ]

This term was obsoleted because it represents a biological process, not a cellular localization.

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20159\" xsd:anyURI" ]

null

true

7

GO:0098581

98,581

detection of external biotic stimulus

biological_process

The series of events in which an external biotic stimulus is detected and converted into a molecular signal. An external biotic stimulus is defined as one caused or produced by a living organism other than the one being stimulated.

[ "GOC:dos" ]

null

[ "detection of exogenous biotic stimulus" ]

[ "EXACT" ]

[]

[ "GO:0009595", "GO:0043207" ]

[]

[ "GO:0009595", "GO:0043207" ]

[]

dos

2014-01-22T14:20:16Z

false

true

5

GO:0098582

98,582

innate vocalization behavior

biological_process

A vocalisation behavior that is innate, i.e. that does not need to be learned in order to occur.

[ "GOC:BHF", "GOC:dos", "GOC:rl" ]

null

[]

[ "GO:0071625" ]

[]

[ "GO:0071625" ]

[]

dos

2014-01-24T12:47:01Z

false

true

9

GO:0098583

98,583

learned vocalization behavior

biological_process

A vocalization behavior that is the result of learning.

[ "GOC:BHF", "GOC:dos", "GOC:rl", "PMID:16418265", "PMID:17035521" ]

Examples include human speech and learned bird song.

[]

[ "GO:0071625", "GO:0098598" ]

[]

[ "GO:0071625", "GO:0098598" ]

[]

dos

2014-01-24T12:48:57Z

false

true

7

GO:0098584

98,584

host cell synaptic vesicle

cellular_component

A secretory organelle of a host cell, some 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane.

[ "GOC:dos" ]

null

[]

[ "GO:0044161" ]

[ "part_of GO:0044221" ]

[ "part_of" ]

[ "GO:0044221" ]

[ "GO:0044161", "GO:0044221" ]

[]

dos

2014-01-24T13:14:13Z

false

true

6

GO:0098585

98,585

host cell synaptic vesicle membrane

cellular_component

The lipid bilayer surrounding a host synaptic vesicle.

[ "GOC:dos" ]

null

[]

[ "GO:0044162" ]

[ "part_of GO:0098584" ]

[ "part_of" ]

[ "GO:0098584" ]

[ "GO:0044162", "GO:0098584" ]

[]

dos

2014-01-24T13:15:14Z

false

true

4

GO:0098586

98,586

cellular response to virus

biological_process

Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus.

[ "GOC:dos" ]

null

[]

[ "GO:0009615" ]

[]

[ "GO:0009615" ]

[]

dos

2014-01-24T14:54:08Z

false

true

4

GO:0098590

98,590

plasma membrane region

cellular_component

A membrane that is a (regional) part of the plasma membrane.

[ "GOC:dos" ]

Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass.

[ "region of plasma membrane" ]

[ "EXACT" ]

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:0016020" ]

[ "part_of GO:0005886" ]

[ "part_of" ]

[ "GO:0005886" ]

[ "GO:0005886", "GO:0016020" ]

[ "GO:0016020", "part_of GO:0005886" ]

[]

dos

2014-03-06T11:55:32Z

false

true

9

GO:0098591

98,591

external side of apical plasma membrane

cellular_component

The leaflet the apical region of the plasma membrane that faces the extracellular side of the cell, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0009897" ]

[ "part_of GO:0016324" ]

[ "part_of" ]

[ "GO:0016324" ]

[ "GO:0009897", "GO:0016324" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2014-03-06T12:04:33Z

false

true

9

GO:0098592

98,592

cytoplasmic side of apical plasma membrane

cellular_component

The leaflet of the apical region of the plasma membrane that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.

[ "GOC:ab", "GOC:dos" ]

null

[]

[ "GO:0009898" ]

[ "part_of GO:0016324" ]

[ "part_of" ]

[ "GO:0016324" ]

[ "GO:0009898", "GO:0016324" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]

dos

2014-03-06T12:07:32Z

false

true

4

GO:0098593

98,593

goblet cell theca

cellular_component

A cup shaped specialization of the cytoskeleton that forms a thin layer located just below the apical mass of mature mucin secretory granules in the cytoplasm of goblet cells of the intestinal epithelium. It consists of an orderly network of intermediate filaments and microtubules. Microtubules are arranged vertically,...

[ "PMID:6541604" ]

null

[]

[ "GO:0043232" ]

[ "part_of GO:0005737", "part_of GO:0005856" ]

[ "part_of", "part_of" ]

[ "GO:0005737", "GO:0005856" ]

[ "GO:0005737", "GO:0005856", "GO:0043232" ]

[]

dos

2014-03-11T14:52:33Z

false

true

3

GO:0098594

98,594

mucin granule

cellular_component

A secretory granule that contains mucin.

[ "PMID:16377632" ]

null

[]

[ "GO:0030141" ]

[]

[ "GO:0030141" ]

[]

dos

2014-03-11T15:59:11Z

false

true

9

GO:0098595

98,595

perivitelline space

cellular_component

The space between the membrane of an oocyte and a surrounding membranous structure (zona pellucida or perivitelline membrane).

[ "GOC:dos" ]

null

[]

[ "GO:0110165" ]

[ "part_of GO:0005576" ]

[ "part_of" ]

[ "GO:0005576" ]

[ "GO:0005576", "GO:0110165" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31720\" xsd:anyURI" ]

dos

2014-04-08T16:07:31Z

false

true

9

GO:0098596

98,596

imitative learning

biological_process

Learning in which new behaviors are acquired through imitation.

[ "GOC:dos", "Wikipedia:Imitative_learning&oldid=593192364" ]

null

[]

[ "Wikipedia:Imitative_learning", "Wikipedia:Observational_learning#Observational_learning_compared_to_imitation" ]

[ "GO:0098597" ]

[]

[ "GO:0098597" ]

[]

dos

2014-04-10T11:00:39Z

false

true

1

GO:0098597

98,597

observational learning

biological_process

Learning that occurs through observing the behavior of others.

[ "GOC:dos", "Wikipedia:Observational_learning&oldid=603524137" ]

Observation here is used in a broad sense to include perception of the behavior of others via any form or combination of forms of sensory perception (visual, auditory etc). Observational learning is broader than imitative learning in that it does not require a duplication of the behavior exhibited by the model.

[]

[ "Wikipedia:Observational_learning" ]

[ "GO:0007612" ]

[]

[ "GO:0007612" ]

[]

dos

2014-04-10T11:07:10Z

false

true

3

GO:0098598

98,598

learned vocalization behavior or vocal learning

biological_process

Vocalisation behavior that is the result of learning, or the process by which new vocalizations are learned.

[ "GOC:BHF", "GOC:dos", "GOC:rl", "PMID:16418265", "PMID:17035521" ]

This grouping term is necessary because, in the absence of conditional mutations, it is not possible to use phenotypic evidence to distinguish an effect on vocal learning from an effect on learned vocalisation behavior.

[]

[ "GO:0007611" ]

[]

[ "GO:0007611" ]

[]

dos

2014-04-10T11:34:33Z

false

true

8

GO:0098599

98,599

palmitoyl hydrolase activity

molecular_function

Catalysis of a hydrolase reaction that removes a palmitoyl moiety from some substrate.

[ "GOC:dos", "GOC:pg" ]

null

[]

[ "Reactome:R-HSA-5690046 \"PPT2 hydrolyses PALMCoA to PALM\"", "Reactome:R-HSA-9027670 \"ESTG binding induces ESR depalmitoylation\"" ]

[ "GO:0016787" ]

[ "part_of GO:0098734" ]

[ "part_of" ]

[ "GO:0098734" ]

[ "GO:0016787", "GO:0098734" ]

[]

dos

2014-04-11T17:57:36Z

false

true

1

GO:0098600

98,600

selenomethionine gamma-lyase activity

molecular_function

Catalysis of the reaction: L-Selenomethionine + H2O = Methaneselenol + Ammonia + 2-oxobutanoic acid.

[ "PMID:11578145", "PMID:16037612", "PMID:16444005" ]

null

[]

[ "Reactome:R-HSA-2408537 \"Excess SeMet is cleaved into MeSeH by PXLP-K212-CTH\"" ]

[ "GO:0016846" ]

[]

[ "GO:0016846" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

dos

2014-04-15T15:00:28Z

false

true

8

GO:0098601

98,601

selenomethionine adenosyltransferase activity

molecular_function

Catalysis of the reaction: L-selenomethionine + ATP + H2O = L-adenosylselenomethionine + phosphate + diphosphate.

[ "PMID:2339986", "RHEA:31211" ]

null

[]

[ "Reactome:R-HSA-2408551 \"SeMet is converted to AdoSeMet by MAT\"", "RHEA:31211" ]

[ "GO:0016765" ]

[]

[ "GO:0016765" ]

[]

[ "skos:exactMatch RHEA:31211", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

dos

2014-04-15T15:15:03Z

false

true

5

GO:0098603

98,603

selenol Se-methyltransferase activity

molecular_function

Catalysis of the reaction: R + Se-Adenosylselenomethionine = CH3-R + Se-Adenosyl-L-selenohomocysteine.

[ "PMID:1711890" ]

null

[]

[ "Reactome:R-HSA-2408544 \"AdoSeMet is converted to AdeSeHCys by MetTrans(1)\"" ]

[ "GO:0008168" ]

[]

[ "GO:0008168" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

7

GO:0098604

98,604

adenosylselenohomocysteinase activity

molecular_function

Catalysis of the reaction: Se-Adenosyl-L-selenohomocysteine + H2O = Adenosine + Selenohomocysteine.

[ "GOC:dos", "PMID:1711890", "PMID:7305945" ]

null

[]

[ "Reactome:R-HSA-2408532 \"AdeSeHCys is hydrolysed to SeHCys by AHCY\"" ]

[ "GO:0016802" ]

[]

[ "GO:0016802" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

dos

2014-04-16T10:53:22Z

false

true

5

GO:0098605

98,605

selenocystathionine beta-synthase activity

molecular_function

Catalysis of the reaction: L-Serine + Selenohomocysteine = L-Selenocystathionine + H2O.

[ "PMID:6456763" ]

null

[]

[ "Reactome:R-HSA-2408559 \"SeHCys and Ser are dehydrated into SeCysta by CBS\"" ]

[ "GO:0016836" ]

[]

[ "GO:0016836" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

dos

2014-04-16T11:07:50Z

false

true

4

GO:0098607

98,607

obsolete methylselenocysteine deselenhydrase activity

molecular_function

OBSOLETE. Catalysis of the reaction: Se-Methyl-L-selenocysteine + H2O = pyruvic acid + NH3 + Methaneselenol.

[ "PMID:17451884", "PMID:20383543" ]

This term was obsoleted because there is no evidence that this reaction exists.

[]

[ "Reactome:R-HSA-2408539 \"MeSec is hydrolysed to MeSeH by PXLP-K212-CTH\"" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31530\" xsd:anyURI" ]

dos

2014-04-16T11:24:12Z

true

9

GO:0098608

98,608

methylselenol demethylase activity

molecular_function

Catalysis of the reaction: methylselenol + H2O = H2Se + CH3OH.

[ "PMID:17451884", "PMID:17988700" ]

null

[]

[ "Reactome:R-HSA-2408530 \"MeSeH is hydrolysed to H2Se by methylselenol demethylase\"" ]

[ "GO:0032451" ]

[]

[ "GO:0032451" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

dos

2014-04-16T11:28:00Z

false

true

6

GO:0098609

98,609

cell-cell adhesion

biological_process

The attachment of one cell to another cell via adhesion molecules.

[ "GOC:dos" ]

null

[ "single organismal cell-cell adhesion" ]

[ "RELATED" ]

[ "GO:0016337" ]

[]

[ "GO:0007155" ]

[]

[ "GO:0007155" ]

[]

dos

2014-04-16T13:40:03Z

false

true

5

GO:0098610

98,610

adhesion between unicellular organisms

biological_process

The attachment of two unicellular organisms to each other.

[ "GOC:dos" ]

null

[ "adhesion between unicellular organisms via cell-wall interaction", "multi-organismal cell-cell adhesion" ]

[ "NARROW", "BROAD" ]

[ "GO:0098741" ]

[]

[ "GO:0098609" ]

[]

[ "GO:0098609" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/18814\" xsd:anyURI" ]

null

false

true

6

GO:0098613

98,613

methaneselenol methyltransferase activity

molecular_function

Catalysis of the reaction: S-adenosyl-L-methionine + methaneselenol = S-adenosyl-L-homocysteine + dimethyl selenide.

[ "PMID:14705", "PMID:17988700", "PMID:4380351" ]

null

[]

[ "Reactome:R-HSA-2408541 \"MeSeH is methylated to Me2Se by MeSeH methyltransferase\"" ]

[ "GO:0008168" ]

[]

[ "GO:0008168" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

6

GO:0098614

98,614

hydrogen selenide methyltransferase activity

molecular_function

Catalysis of the reaction: S-adenosyl-L-methionine + hydrogen selenide = S-adenosyl-L-homocysteine + methaneselenol.

[ "PMID:14705", "PMID:17988700" ]

null

[]

[ "Reactome:R-HSA-2408536 \"H2Se is methylated to MeSeH by H2Se methyltransferase\"" ]

[ "GO:0008168" ]

[]

[ "GO:0008168" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

7

GO:0098615

98,615

dimethyl selenide methyltransferase activity

molecular_function

Catalysis of the reaction: S-adenosyl-L-methionine + dimethyl selenide = S-adenosyl-L-homocysteine + trimethylselenonium.

[ "PMID:17988700", "PMID:3350800" ]

null

[]

[ "Reactome:R-HSA-2408554 \"Me2Se is methylated to Me3Se+ by INMT\"" ]

[ "GO:0008168" ]

[]

[ "GO:0008168" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

9

GO:0098616

98,616

selenate adenylyltransferase (ATP) activity

molecular_function

Catalysis of the reaction: ATP + H2SeO4 = diphosphate + adenylylselenate.

[ "PMID:2537056" ]

null

[]

[ "Reactome:R-HSA-2408525 \"H2SeO4 is converted to APSe by PAPSS1,2\"" ]

[ "GO:0070566" ]

[]

[ "GO:0070566" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

6

GO:0098618

98,618

selenomethionine-tRNA ligase activity

molecular_function

Catalysis of the reaction: ATP + L-selenomethionine + tRNA(Met) = AMP + diphosphate + selenomethionyl-tRNA(Met).

[ "PMID:16661668", "PMID:16661782" ]

null

[]

[ "Reactome:R-HSA-2408546 \"tRNA(Met) is selenomethionylated to SeMet-tRNA(Met) by multisynthetase complex\"" ]

[ "GO:0004812" ]

[]

[ "GO:0004812" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

7

GO:0098619

98,619

selenocysteine-tRNA ligase activity

molecular_function

Catalysis of the reaction: tRNASec + L-Ser + ATP = Ser-tRNASec + AMP + diphosphate.

[ "PMID:8890909", "PMID:9431993", "PMID:9637248" ]

null

[]

[ "Reactome:R-HSA-2408526 \"tRNA(Sec) is serylated to Ser-tRNA(Sec) by SARS dimer\"" ]

[ "GO:0004812" ]

[]

[ "GO:0004812" ]

[]

null

false

true

2

GO:0098620

98,620

seryl-selenocysteinyl-tRNA kinase activity

molecular_function

Catalysis of the reaction: Ser-tRNA(Sec) + ATP = Sep-tRNA(Sec) + ADP.

[ "PMID:15317934" ]

null

[]

[ "Reactome:R-HSA-2408507 \"Ser-tRNA(Sec) is phosphorylated to Sep-tRNA(Sec) by PSTK\"" ]

[ "GO:0016773", "GO:0140101" ]

[]

[ "GO:0016773", "GO:0140101" ]

[]

null

false

true

9

GO:0098621

98,621

O-phosphoseryl-tRNA(Sec) selenium transferase activity

molecular_function

Catalysis of the reaction: O-phospho-L-seryl-tRNA(Sec) + selenophosphate + H2O = L-selenocysteinyl-tRNA(Sec) + 2 phosphate.

[ "PMID:17142313", "PMID:19608919", "RHEA:25041" ]

null

[ "O-phospho-L-seryl-tRNA(Sec):L-selenocysteinyl-tRNA synthase", "O-phosphoseryl-tRNA:selenocysteinyl-tRNA synthase", "phosphoseryl-selenocysteinyl-tRNA selenium transferase activity", "SepSecS" ]

[ "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "EC:2.9.1.2", "Reactome:R-HSA-2408555 \"Sep-tRNA(Sec) is converted to Sec-tRNA(Sec) by PXLP-K284-SEPSECS tetramer\"", "RHEA:25041" ]

[ "GO:0016785", "GO:0140101" ]

[]

[ "GO:0016785", "GO:0140101" ]

[]

[ "skos:exactMatch EC:2.9.1.2", "skos:exactMatch RHEA:25041", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

2

GO:0098622

98,622

selenodiglutathione-disulfide reductase (NADPH) activity

molecular_function

Catalysis of the reaction: H+ + selenodiglutathione + NADPH = gluthathioselenol + glutathione + NADP+.

[ "PMID:1569062", "RHEA:34927" ]

null

[ "selenodiglutathione-disulfide reductase (NADP) activity", "selenodiglutathione-disulfide reductase activity" ]

[ "EXACT", "BROAD" ]

[]

[ "Reactome:R-HSA-2408542 \"GSSeSG is reduced to GSSeH and GSH by GSR\"", "RHEA:34927" ]

[ "GO:0015036", "GO:0016668" ]

[]

[ "GO:0015036", "GO:0016668" ]

[]

[ "skos:exactMatch RHEA:34927", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27180\" xsd:anyURI" ]

null

false

true

9

GO:0098623

98,623

selenite reductase (NADPH) activity

molecular_function

Catalysis of the reaction: SeO3(2-) + 3 NADPH + 5H+ = H2Se + 3NADP+ + 3H2O.

[ "PMID:1321713" ]

null

[ "selenite reductase activity" ]

[ "EXACT" ]

[]

[ "Reactome:R-HSA-2408558 \"SeO3(2-) is reduced to H2Se by TXNRD1\"" ]

[ "GO:0016651" ]

[]

[ "GO:0016651" ]

[]

null

false

true

5

GO:0098624

98,624

3'-phosphoadenylylselenate reductase activity

molecular_function

Catalysis of the reaction: 3'-phosphoadenylylselenate + NADPH = adenosine 3',5'-bisphosphate + selenite + NADP+ + H+.

[ "PMID:14723223" ]

null

[ "PAPSe reductase activity" ]

[ "EXACT" ]

[]

[ "Reactome:R-HSA-2408548 \"PAPSe is reduced to SeO3(2-) by PAPSe reductase\"" ]

[ "GO:0016651" ]

[]

[ "GO:0016651" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

6

GO:0098625

98,625

methylselenol reductase activity

molecular_function

Catalysis of the reaction: NADPH + H+ + CH3SeOH = NADP+ + CH3SeH + H2O.

[ "PMID:11782468" ]

null

[]

[ "Reactome:R-HSA-5263614 \"MeSeOH is reduced to MeSeH by TXNRD1\"" ]

[ "GO:0016651" ]

[]

[ "GO:0016651" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

7

GO:0098626

98,626

methylseleninic acid reductase activity

molecular_function

Catalysis of the reaction: NADPH + H+ + CH3SeO2H = NADP+ + CH3SeOH + H2O.

[ "PMID:11782468" ]

null

[]

[ "Reactome:R-HSA-5263616 \"MeSeO2H is reduced to MeSeOH by TXNRD1\"" ]

[ "GO:0016651" ]

[]

[ "GO:0016651" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]

null

false

true

9

GO:0098627

98,627

protein arginine phosphatase activity

molecular_function

Catalysis of the reaction: phospho-L-arginyl-[protein] +H2O = L-arginyl-[protein] + phosphate.

[ "PMID:23770242", "RHEA:43380" ]

null

[]

[ "EC:3.9.1.2", "RHEA:43380" ]

[ "GO:0004721", "GO:0016825" ]

[]

[ "GO:0004721", "GO:0016825" ]

[]

[ "skos:exactMatch EC:3.9.1.2", "skos:exactMatch RHEA:43380", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21517\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

dos

2014-04-17T17:57:39Z

false

true

5

GO:0098628

98,628

peptidyl-N-phospho-arginine dephosphorylation

biological_process

The removal of phosphate residues from peptidyl-N-phospho-arginine to form peptidyl-arginine.

[ "PMID:23770242" ]

null

[]

[ "gocheck_obsoletion_candidate" ]

[]

[ "GO:0006470" ]

[]

[ "GO:0006470" ]

[]

dos

2014-04-17T18:03:31Z

false

true

5

GO:0098629

98,629

trans-Golgi network membrane organization

biological_process

A process which results in the assembly, arrangement of constituent parts, or disassembly of a trans-Golgi network membrane.

[ "GOC:di", "GOC:dos", "PMID:23345439" ]

null

[]

[ "GO:0061024" ]

[]

[ "GO:0061024" ]

[]

null

false

true

4

GO:0098630

98,630

aggregation of unicellular organisms

biological_process

The clustering together of unicellular organisms in suspension form aggregates.

[ "GOC:dos" ]

null

[ "aggregation of single cell organisms" ]

[ "EXACT" ]

[]

[ "GO:0098743" ]

[]

[ "GO:0098743" ]

[]

null

false

true

6

GO:0098631

98,631

cell adhesion mediator activity

molecular_function

The binding by a cell-adhesion protein on a cell surface to an adhesion molecule on another cell surface or an external substrate, to mediate adhesion of the cell to the external substrate or to another cell.

[ "GOC:vw", "Wikipedia:Cell_adhesion" ]

null

[ "cell adhesion molecule", "protein binding involved in cell adhesion" ]

[ "EXACT", "EXACT" ]

[]

[ "goslim_generic", "goslim_prokaryote" ]

[]

[ "GO:0050839" ]

[ "part_of GO:0007155" ]

[ "part_of" ]

[ "GO:0007155" ]

[ "GO:0007155", "GO:0050839" ]

[ "GO:0005488", "part_of GO:0007155" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22959\" xsd:anyURI" ]

null

false

true

2

GO:0098632

98,632

cell-cell adhesion mediator activity

molecular_function

The binding by a cell-adhesion protein on the cell surface to an extracellular component of a different cell, to mediate adhesion of the cell to another cell.

[ "GOC:dos", "Wikipedia:Cell_adhesion" ]

null

[ "cell-cell adhesion molecule", "protein binding involved in cell-cell adhesion" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0098631" ]

[ "part_of GO:0098609" ]

[ "part_of" ]

[ "GO:0098609" ]

[ "GO:0098609", "GO:0098631" ]

[ "GO:0005515", "part_of GO:0098609" ]

[]

null

false

true

6

GO:0098634

98,634

cell-matrix adhesion mediator activity

molecular_function

The binding by a cell-adhesion protein on the cell surface to an extracellular matrix component, to mediate adhesion of the cell to the extracellular matrix.

[ "Wikipedia:Cell_adhesion" ]

null

[ "cell-matrix adhesion molecule", "protein binding involved in cell-matrix adhesion" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0098631" ]

[ "part_of GO:0007160" ]

[ "part_of" ]

[ "GO:0007160" ]

[ "GO:0007160", "GO:0098631" ]

[ "GO:0005488", "part_of GO:0007160" ]

[]

null

false

true

3

GO:0098635

98,635

protein complex involved in cell-cell adhesion

cellular_component

Any protein complex that is capable of carrying out some part of the process of cell-cell adhesion.

[ "GOC:dos" ]

null

[]

[ "GO:0098636" ]

[]

[ "GO:0098636" ]

[]

null

false

true

8

GO:0098636

98,636

protein complex involved in cell adhesion

cellular_component

Any protein complex that is capable of carrying out some part of the process of cell adhesion to the cell matrix or to another cell.

[ "GOC:dos" ]

null

[ "cell adhesion complex" ]

[ "RELATED" ]

[ "GO:1990307" ]

[]

[ "GO:0032991" ]

[]

[ "GO:0032991" ]

[]

null

false

true

9

GO:0098637

98,637

protein complex involved in cell-matrix adhesion

cellular_component

Any protein complex that is capable of carrying out some part of the process of cell-matrix adhesion.

[ "GOC:dos" ]

null

[]

[ "GO:0098636" ]

[]

[ "GO:0098636" ]

[]

null

false

true

9

GO:0098638

98,638

laminin binding involved in cell-matrix adhesion

molecular_function

Any laminin protein binding that occurs as part of cell-matrix adhesion.

[ "GOC:dos" ]

null

[]

[ "GO:0043236", "GO:0098634" ]

[]

[ "GO:0043236", "GO:0098634" ]

[ "GO:0043236", "part_of GO:0007160" ]

[]

null

false

true

7

GO:0098639

98,639

collagen binding involved in cell-matrix adhesion

molecular_function

Any collagen binding that occurs as part of cell-matrix adhesion.

[ "GOC:dos" ]

null

[]

[ "GO:0005518", "GO:0098634" ]

[]

[ "GO:0005518", "GO:0098634" ]

[ "GO:0005518", "part_of GO:0007160" ]

[]

null

false

true

8

GO:0098640

98,640

integrin binding involved in cell-matrix adhesion

molecular_function

Any integrin binding that occurs as part of the process of cell-matrix adhesion.

[ "GOC:dos" ]

null

[]

[ "GO:0005178", "GO:0098634" ]

[]

[ "GO:0005178", "GO:0098634" ]

[ "GO:0005178", "part_of GO:0007160" ]

[]

null

false

true

3

GO:0098641

98,641

cadherin binding involved in cell-cell adhesion

molecular_function

Any cadherin binding that occurs as part of the process of cell-cell adhesion.

[ "GOC:dos" ]

null

[]

[ "GO:0045296", "GO:0098632" ]

[]

[ "GO:0045296", "GO:0098632" ]

[ "GO:0045296", "part_of GO:0098609" ]

[]

null

false

true

2

GO:0098642

98,642

network-forming collagen trimer

cellular_component

A collagen trimer that forms networks.

[ "PMID:21421911" ]

null

[]

[ "GO:0005581", "GO:0140392" ]

[ "part_of GO:0031012", "part_of GO:0098645" ]

[ "part_of", "part_of" ]

[ "GO:0031012", "GO:0098645" ]

[ "GO:0005581", "GO:0031012", "GO:0098645", "GO:0140392" ]

[ "GO:0005581", "part_of GO:0098645" ]

[]

null

false

true

4

GO:0098643

98,643

fibrillar collagen complex

cellular_component

A supramolecular assembly of fibrillar collagen complexes in the form of a long fiber (fibril) with transverse striations (bands).

[ "GOC:dos", "PMID:20386646", "PMID:21421911", "PMID:29853175" ]

null

[ "banded collagen fibril", "fibrillar collagen" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0098644" ]

[ "part_of GO:0140152" ]

[ "part_of" ]

[ "GO:0140152" ]

[ "GO:0098644", "GO:0140152" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29474\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30146\" xsd:anyURI" ]

null

false

true

9

GO:0098644

98,644

complex of collagen trimers

cellular_component

A complex of collagen trimers such as a fibril or collagen network.

[ "GOC:dos" ]

null

[ "Supramolecular aggregate of collagen", "Supramolecular collagen assembly" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0099080" ]

[ "has_part GO:0005581" ]

[ "has_part" ]

[ "GO:0005581" ]

[ "GO:0005581", "GO:0099080" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31491\" xsd:anyURI" ]

null

false

true

3

GO:0098645

98,645

complex of network-forming collagens

cellular_component

A supramolecular complex that consists of collagen triple helices associated to form a network.

[ "GOC:dos", "PMID:21421911" ]

null

[ "collagen network" ]

[ "EXACT" ]

[]

[ "GO:0098644" ]

[]

[ "GO:0098644" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30938\" xsd:anyURI" ]

null

false

true

1

GO:0098646

98,646

hexagonal collagen network

cellular_component

A hexagonal-shaped collagen network formed by collagen type X trimer or collagen type VIII trimers. Collagen type X trimers are mostly found in the cartilage hyaline matrix, which is located in the interstitial area. Note that collagen type VIII has been found in the basement membrane, but the localization is not defin...

[ "PMID:21421911", "PMID:3047147", "PMID:31387942", "PMID:34948124" ]

null

[ "basement membrane hexagonal collagen network", "collagen hexagonal network", "hexagonal collagen network of basement membrane", "interstitial hexagonal collagen network" ]

[ "NARROW", "EXACT", "NARROW", "NARROW" ]

[]

[ "GO:0098645" ]

[ "part_of GO:0140152" ]

[ "part_of" ]

[ "GO:0140152" ]

[ "GO:0098645", "GO:0140152" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29415\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30146\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31494\" xsd:anyURI" ]

null

false

true

7

GO:0098647

98,647

collagen beaded filament

cellular_component

A supramolecular assembly of collagen trimers with a 'beads on a string'-like structure.

[ "GOC:dos", "PMID:19693541" ]

null

[ "beads on a string" ]

[ "RELATED" ]

[]

[ "GO:0098644", "GO:0099512" ]

[ "part_of GO:0140086" ]

[ "part_of" ]

[ "GO:0140086" ]

[ "GO:0098644", "GO:0099512", "GO:0140086" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29456\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30149\" xsd:anyURI" ]

null

false

true

6

GO:0098648

98,648

collagen anchoring fibril

cellular_component

A specialised collagen fibril that functions as an anchor, binding to other collagen structures.

[ "GOC:dos", "PMID:19945621" ]

null

[]

[ "GO:0098644" ]

[ "part_of GO:0140086" ]

[ "part_of" ]

[ "GO:0140086" ]

[ "GO:0098644", "GO:0140086" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29456\" xsd:anyURI" ]

null

false

true

3

GO:0098649

98,649

obsolete response to peptidyl-dipeptidase A inhibitor

biological_process

OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptidyl-dipeptidase A inhibitor stimulus.

[ "GOC:dos" ]

This term was obsoleted because it does not represent a physiological process.

[ "response to ACE inhibitor", "response to angiotensin-converting enzyme inhibitor" ]

[ "NARROW", "NARROW" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19725\" xsd:anyURI" ]

null

true

8

GO:0098650

98,650

peptidyl-proline 4-dioxygenase binding

molecular_function

Binding to a peptidyl-proline 4-dioxygenase.

[ "GOC:dos", "GOC:kvm" ]

null

[]

[ "GO:0019899" ]

[]

[ "GO:0019899" ]

[]

null

false

true

6

GO:0098652

98,652

obsolete collagen type VII anchoring fibril

cellular_component

OBSOLETE. An antiparallel dimer of two collagen VII trimers, one end of which is embedded in the lamina densa while the other end attaches to banded collagen fibrils in the dermis.

[ "PMID:19693541" ]

This term was obsoleted because it was redundant with collagen type VII trimer ; GO:0005590.

[]

[ "GO:0005590" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30939\" xsd:anyURI" ]

null

true

8

GO:0098653

98,653

centromere clustering

biological_process

The process by which centromeres/kinetochores become localized to clusters.

[ "GOC:di", "GOC:dos", "PMID:10761928", "PMID:23283988", "PMID:8486732" ]

As inner kinetochores are an integral part of centromeres, we treat centromere and kinetochore clustering as the same process.

[ "kinetochore clustering" ]

[ "EXACT" ]

[ "GO:0098587" ]

[]

[ "GO:0050000", "GO:0072765" ]

[]

[ "GO:0050000", "GO:0072765" ]

[]

dos

2014-05-23T19:03:37Z

false

true

8

GO:0098654

98,654

CENP-A recruiting complex

cellular_component

A protein complex that includes Mis16(Yippee family) and/or Mis18 (WD repeat) subunits that is involved in the deposition of centromere specific (CENP-A containing) nucleosomes at the centromere.

[ "PMID:24774534" ]

null

[ "MIS18 complex" ]

[ "NARROW" ]

[]

[ "GO:0140513" ]

[]

[ "GO:0140513" ]

[]

null

false

true

9

GO:0098655

98,655

monoatomic cation transmembrane transport

biological_process

The process in which a monoatomic cation is transported across a membrane. Monatomic cations (also called simple cations) are positively charged ions consisting of exactly one atom.

[ "GOC:dos", "GOC:vw" ]

null

[ "ATP hydrolysis coupled cation transmembrane transport", "cation transmembrane transport" ]

[ "NARROW", "BROAD" ]

[ "GO:0099132" ]

[]

[ "GO:0006812", "GO:0034220" ]

[]

[ "GO:0006812", "GO:0034220" ]

[]

null

false

true

2

GO:0098656

98,656

monoatomic anion transmembrane transport

biological_process

The process in which a monoatomic anion is transported across a membrane. Monatomic anions (also called simple anions) are negatively charged ions consisting of exactly one atom.

[ "GOC:dos", "GOC:vw" ]

null

[ "anion transmembrane transport", "ATP hydrolysis coupled anion transmembrane transport" ]

[ "EXACT", "NARROW" ]

[ "GO:0099133" ]

[]

[ "GO:0006820", "GO:0034220" ]

[]

[ "GO:0006820", "GO:0034220" ]

[]

null

false

true

2

GO:0098657

98,657

import into cell

biological_process

The directed movement of some substance from outside of a cell into a cell. This may occur via transport across the plasma membrane or via endocytosis.

[ "GOC:dos" ]

null

[ "uptake" ]

[ "BROAD" ]

[]

[ "GO:0006810" ]

[]

[ "GO:0006810" ]

[]

null

false

true

2

GO:0098658

98,658

inorganic anion import across plasma membrane

biological_process

The directed movement of inorganic anions from outside of a cell, across the plasma membrane and into the cytosol.

[ "GOC:dos" ]

null

[ "inorganic anion import into cell" ]

[ "EXACT" ]

[]

[ "GO:0015698", "GO:0099587" ]

[]

[ "GO:0015698", "GO:0099587" ]

[]

null

false

true

6

GO:0098659

98,659

inorganic cation import across plasma membrane

biological_process

The directed movement of inorganic cations from outside of a cell, across the plasma membrane and into the cytosol.

[ "GOC:dos" ]

null

[ "inorganic cation import into cell" ]

[ "EXACT" ]

[]

[ "GO:0099587" ]

[]

[ "GO:0099587" ]

[]

null

false

true

7

GO:0098661

98,661

obsolete inorganic anion transmembrane transport

biological_process

OBSOLETE. The process in which an inorganic anion is transported across a membrane.

[ "GOC:mah" ]

Note that this term is not intended for use in annotating lateral movement within membranes. The reason for obsoletion is that this term was an unnecessary and confusing grouping term.

[ "inorganic anion membrane transport", "transmembrane inorganic anion transport" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0055085" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30715\" xsd:anyURI" ]

null

true

9

GO:0098662

98,662

obsolete inorganic cation transmembrane transport

biological_process

OBSOLETE. A process in which an inorganic cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.

[ "GOC:mah" ]

Note that this term is not intended for use in annotating lateral movement within membranes. The reason for obsoletion is that this term was an unnecessary and confusing grouping term.

[ "divalent inorganic cation transport", "inorganic cation membrane transport", "monovalent inorganic cation transport", "transmembrane inorganic cation transport" ]

[ "NARROW", "EXACT", "NARROW", "EXACT" ]

[ "GO:0015672", "GO:0072511" ]

[]

[ "GO:0055085" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30715\" xsd:anyURI" ]

null

true

5

GO:0098663

98,663

obsolete transmembrane transporter activity involved in import into cell

molecular_function

OBSOLETE. Any transmembrane transporter activity that is involved in importing some substance into a cell.

[ "GOC:dos" ]

The reason for obsoletion is that this terms partly represents the process "import into cell".

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14322\" xsd:anyURI" ]

null

true

1

GO:0098664

98,664

G protein-coupled serotonin receptor signaling pathway

biological_process

The series of molecular signals generated as a consequence of a G protein-coupled serotonin receptor binding to one of its physiological ligands.

[ "GOC:mah" ]

null

[ "G-protein coupled serotonin receptor signaling pathway" ]

[ "EXACT" ]

[]

[ "GO:0007186" ]

[ "has_part GO:0004993" ]

[ "has_part" ]

[ "GO:0004993" ]

[ "GO:0004993", "GO:0007186" ]

[]

dos

2016-12-21T12:07:58Z

false

true

2

GO:0098665

98,665

serotonin receptor complex

cellular_component

A protein complex that is capable of serotonin receptor activity.

[ "GO_REF:0000088", "GOC:bhm", "GOC:TermGenie", "PMID:16116092" ]

null

[ "5-HT receptor complex", "5-hydroxytryptamine receptor complex", "5HT receptor complex" ]

[ "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0043235" ]

[]

[ "GO:0043235" ]

[]

dos

2016-12-21T12:24:56Z

false

true

9

GO:0098666

98,666

G protein-coupled serotonin receptor complex

cellular_component

A protein complex that is capable of G protein-coupled serotonin receptor activity.

[ "GO_REF:0000088", "GOC:bhm", "GOC:TermGenie" ]

null

[ "G-protein coupled serotonin receptor complex" ]

[ "EXACT" ]

[]

[ "GO:0043235" ]

[]

[ "GO:0043235" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12942\" xsd:anyURI" ]

dos

2016-12-21T12:28:12Z

false

true

5

GO:0098669

98,669

superinfection exclusion

biological_process

The process by which a preexisting viral infection prevents a secondary infection with the same or a closely related virus. Typically some aspect of viral entry is inhibited, but post entry mechanisms have also been documented.

[ "PMID:11985726", "PMID:23692331", "PMID:24089557", "PMID:8012757", "VZ:3971" ]

null

[]

[ "VZ:3971 \"Superinfection exclusion\"" ]

[ "GO:0016032" ]

[]

[ "GO:0016032" ]

[]

dos

2017-01-16T17:25:21Z

false

true

4

GO:0098671

98,671

adhesion receptor-mediated virion attachment to host cell

biological_process

The process by which a virion attaches to a host cell by binding to a receptor on the host cell surface that does not mediate or trigger entry into the host cell. This binding is typically reversible and enhances significantly infectivity by concentrating the virus in the vicinity of its entry receptors, or bringing it...

[ "PMID:18351291", "VZ:3943" ]

null

[ "viral attachment to host adhesion receptor" ]

[ "EXACT" ]

[]

[ "VZ:3943" ]

[ "GO:0046813" ]

[]

[ "GO:0046813" ]

[]

dos

2017-01-16T13:22:54Z

false

true

5

GO:0098673

98,673

symbiont-mediated suppression of host DNA replication

biological_process

Any process by which a virus inhibits DNA replication in its host cell. Some bacteriophages are known to do this, possibly as a way of increasing the pool of nucleotides available for virus replication.

[ "PMID:17010157", "PMID:21205014" ]

null

[ "inhibition of host DNA replication by virus" ]

[ "NARROW" ]

[]

[ "VZ:3948" ]

[ "GO:0044068" ]

[]

[ "GO:0044068" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28791\" xsd:anyURI" ]

dos

2017-01-17T15:58:15Z

false

true

8

GO:0098674

98,674

extrinsic component of neuronal dense core vesicle membrane

cellular_component

The component of the neuronal dense core vesicle membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.

[ "GOC:dos" ]

null

[]

[ "goslim_synapse" ]

[]

[ "GO:0098922" ]

[ "part_of GO:0099012" ]

[ "part_of" ]

[ "GO:0099012" ]

[ "GO:0098922", "GO:0099012" ]

[ "GO:0019898", "part_of GO:0099012" ]

[]

dos

2017-01-17T16:20:56Z

false

true

8

GO:0098675

98,675

obsolete intrinsic component of neuronal dense core vesicle membrane

cellular_component

OBSOLETE. The component of the neuronal dense core vesicle membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membran...

[ "GOC:dos", "GOC:mah" ]

This term was obsoleted because it represents protein topology, not a cellular component.

[ "intrinsic to neuronal dense core granule membrane" ]

[ "EXACT" ]

[]

[ "GO:0099012" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23424\" xsd:anyURI" ]

dos

2017-01-17T16:22:44Z

true

5

GO:0098676

98,676

symbiont-mediated modulation of host virulence

biological_process

A process by which a virus improves the virulence of its host for that host's respective host. Common in but not limited to bacteriophages; also occurs in phage-bearing bacteria infecting plants or animals for example. Mechanisms include the expression of factors that modulate a bacterial adhesion to a host cell, sprea...

[ "PMID:10913072", "PMID:11553559", "PMID:22919604", "PMID:8658163", "VZ:3965" ]

null

[ "modulation of host virulence by virus" ]

[ "NARROW" ]

[]

[ "VZ:3965 \"Modulation of host virulence by virus\"" ]

[ "GO:0044003" ]

[]

[ "GO:0044003" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23326\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28791\" xsd:anyURI" ]

dos

2017-01-19T11:59:46Z

false

true

1

GO:0098677

98,677

virion maturation

biological_process

Maturation of a virion after separation from the host cell. Not all viruses mature after separation. In those that do, maturation typically involves rearangement and/or cleavage of viral proteins, resulting in the virion becoming competent for reinfection.

[ "ISBN:0781718325", "VZ:1946" ]

null

[ "viral particle maturation", "virus particle maturation" ]

[ "EXACT", "RELATED" ]

[]

[ "VZ:1946" ]

[ "GO:0016032" ]

[ "part_of GO:0019075" ]

[ "part_of" ]

[ "GO:0019075" ]

[ "GO:0016032", "GO:0019075" ]

[]

dos

2017-01-19T12:49:22Z

false

true

5