Datasets:
LiteFold
/
GO

Dataset card Data Studio Files
xet
 Community
go_id
string
go_numeric_id
int64
name
string
namespace
string
definition
string
definition_xrefs
list
comment
string
synonyms
list
synonym_scopes
list
alt_ids
list
subsets
list
xrefs
list
is_a_ids
list
relationship_edges
list
relationship_types
list
relationship_target_ids
list
parent_ids
list
intersection_of
list
union_of
list
disjoint_from
list
replaced_by
list
consider
list
property_values
list
created_by
string
creation_date
string
is_obsolete
bool
in_go_basic
bool
split_bucket
int64
GO:0100014
100,014
obsolete positive regulation of mating type switching by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates mating type switching.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
7
GO:0100015
100,015
obsolete positive regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates inositol biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
6
GO:0100016
100,016
obsolete regulation of thiamine biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates thiamine biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
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[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
3
GO:0100017
100,017
obsolete negative regulation of cell-cell adhesion by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates single organismal cell-cell adhesion.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
2
GO:0100018
100,018
obsolete regulation of glucose import by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates glucose import.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
4
GO:0100019
100,019
obsolete regulation of cAMP-mediated signaling by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates cAMP-mediated signaling.
[ "GOC:cjm", "GOC:obol" ]
The reason for obsoletion is that cAMP-mediated signaling is not mediated by transcription from RNA polII promoter.
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[]
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[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14279\" xsd:anyURI" ]
cjm
2015-04-02T04:13:19Z
true
true
3
GO:0100020
100,020
obsolete regulation of transport by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates transport.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12739\" xsd:anyURI" ]
cjm
2015-04-02T04:13:19Z
true
true
5
GO:0100021
100,021
obsolete regulation of iron ion transport by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates iron ion transport.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[ "regulation of iron ion import by transcription from RNA polymerase II promoter" ]
[ "RELATED" ]
[ "GO:0100022" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
1
GO:0100023
100,023
obsolete regulation of meiotic nuclear division by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates meiotic nuclear division.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
3
GO:0100024
100,024
obsolete regulation of carbohydrate metabolic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates carbohydrate metabolic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
1
GO:0100025
100,025
obsolete negative regulation of cellular amino acid biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates cellular amino acid biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
1
GO:0100026
100,026
obsolete positive regulation of DNA repair by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates DNA repair.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006281" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12739\" xsd:anyURI" ]
cjm
2015-04-02T04:13:19Z
true
true
5
GO:0100027
100,027
obsolete regulation of cell separation after cytokinesis by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates cell separation after cytokinesis.
[ "GOC:cjm", "GOC:obol" ]
null
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
2
GO:0100029
100,029
obsolete regulation of histone modification by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates histone modification.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it describes a process that does not exist.
[]
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[]
[]
[]
[]
[]
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[]
[]
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[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
6
GO:0100030
100,030
obsolete regulation of histone acetylation by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates histone acetylation.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it describes a process that does not exist.
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[]
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[]
[]
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[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
2
GO:0100031
100,031
obsolete regulation of histone methylation by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates histone methylation.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it describes a process that does not exist.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
2
GO:0100032
100,032
obsolete positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phospholipid biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
8
GO:0100034
100,034
obsolete regulation of 4,6-pyruvylated galactose residue biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates 4,6-pyruvylated galactose residue biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
7
GO:0100035
100,035
obsolete negative regulation of transmembrane transport by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates transmembrane transport.
[ "GOC:cjm", "GOC:obol" ]
The term was obsoleted because it is better represented by a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
7
GO:0100036
100,036
obsolete positive regulation of purine nucleotide biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates purine nucleotide biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
7
GO:0100037
100,037
obsolete positive regulation of cellular alcohol catabolic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates cellular alcohol catabolic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
9
GO:0100038
100,038
obsolete regulation of cellular response to oxidative stress by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates cellular response to oxidative stress.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
8
GO:0100039
100,039
obsolete regulation of pyrimidine nucleotide biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates pyrimidine nucleotide biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
1
GO:0100040
100,040
obsolete negative regulation of invasive growth in response to glucose limitation by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates invasive growth in response to glucose limitation.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
9
GO:0100041
100,041
obsolete positive regulation of pseudohyphal growth by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates pseudohyphal growth.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
4
GO:0100042
100,042
obsolete negative regulation of pseudohyphal growth by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates pseudohyphal growth.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
5
GO:0100043
100,043
obsolete negative regulation of cellular response to alkaline pH by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates cellular response to alkaline pH.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
7
GO:0100044
100,044
obsolete negative regulation of cellular hyperosmotic salinity response by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates cellular hyperosmotic salinity response.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
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[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
9
GO:0100045
100,045
obsolete negative regulation of arginine catabolic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates arginine catabolic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[ "GO:1900082" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12739\" xsd:anyURI" ]
cjm
2015-04-02T04:13:19Z
true
true
8
GO:0100046
100,046
obsolete positive regulation of arginine biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates arginine biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
GO:0100046
[]
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[]
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[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
5
GO:0100047
100,047
obsolete negative regulation of inositol biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates inositol biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
4
GO:0100048
100,048
obsolete positive regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phosphatidylcholine biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
[]
[]
[]
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[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
3
GO:0100049
100,049
obsolete negative regulation of phosphatidylcholine biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phosphatidylcholine biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
7
GO:0100050
100,050
obsolete negative regulation of mating type switching by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates mating type switching.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
6
GO:0100051
100,051
obsolete positive regulation of meiotic nuclear division by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates meiotic nuclear division.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
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[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
8
GO:0100052
100,052
obsolete negative regulation of G1/S transition of mitotic cell cycle by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates G1/S transition of mitotic cell cycle.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
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[]
[]
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[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
4
GO:0100053
100,053
obsolete positive regulation of sulfate assimilation by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates sulfate assimilation.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
1
GO:0100055
100,055
obsolete positive regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phosphatidylserine biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
8
GO:0100056
100,056
obsolete negative regulation of phosphatidylserine biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phosphatidylserine biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
9
GO:0100058
100,058
obsolete positive regulation of phenotypic switching by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phenotypic switching.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
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[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
7
GO:0100059
100,059
obsolete negative regulation of phenotypic switching by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates phenotypic switching.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
4
GO:0100060
100,060
obsolete negative regulation of SREBP signaling pathway by DNA binding
molecular_function
OBSOLETE. Any DNA binding that negatively regulates SREBP signaling pathway.
[ "GOC:cjm", "GOC:obol" ]
The reason for obsoletion is that this term should be represented by a GO-CAM model.
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[]
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[]
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[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
6
GO:0100061
100,061
obsolete negative regulation of SREBP signaling pathway by transcription factor catabolic process
biological_process
OBSOLETE. Any transcription factor catabolic process process that negatively regulates SREBP signaling pathway.
[ "GOC:cjm", "GOC:obol" ]
The reason for obsoletion is that this term should be represented by a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
7
GO:0100062
100,062
obsolete positive regulation of SREBP signaling pathway by transcription factor catabolic process
biological_process
OBSOLETE. Any transcription factor catabolic process process that positively_regulates SREBP signaling pathway.
[ "GOC:cjm", "GOC:obol" ]
The reason for obsoletion is that this term should be represented by a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
5
GO:0100064
100,064
obsolete negative regulation of filamentous growth of a population of unicellular organisms in response to starvation by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates filamentous growth of a population of unicellular organisms in response to starvation.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
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[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
7
GO:0100065
100,065
obsolete negative regulation of leucine import by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates leucine import.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
8
GO:0100066
100,066
obsolete negative regulation of induction of conjugation with cellular fusion by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates induction of conjugation with cellular fusion.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
2
GO:0100067
100,067
obsolete positive regulation of spinal cord association neuron differentiation by canonical Wnt signaling pathway
biological_process
OBSOLETE. Any canonical Wnt signaling pathway process that positively_regulates spinal cord association neuron differentiation.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0060070", "GO:1902831" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/25766\" xsd:anyURI" ]
cjm
2015-04-02T04:13:19Z
true
true
4
GO:0100068
100,068
obsolete positive regulation of pyrimidine-containing compound salvage by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates pyrimidine-containing compound salvage.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
6
GO:0100069
100,069
obsolete negative regulation of neuron apoptotic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates neuron apoptotic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
8
GO:0100070
100,070
obsolete regulation of fatty acid biosynthetic process by transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates fatty acid biosynthetic process.
[ "GOC:cjm", "GOC:obol" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
cjm
2015-04-02T04:13:19Z
true
true
5
GO:0101002
101,002
ficolin-1-rich granule
cellular_component
Highly exocytosable gelatinase-poor granules found in neutrophils and rich in ficolin-1. Ficolin-1 is released from neutrophil granules by stimulation with fMLP or PMA, and the majority becomes associated with the surface membrane of the cells and can be detected by flow cytometry.
[ "GOC:mec", "PMID:19741154" ]
null
[ "ficolin granule", "ficolin-1 rich granule" ]
[ "RELATED", "EXACT" ]
[]
[]
[]
[ "GO:0030141" ]
[]
[]
[]
[ "GO:0030141" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0101004
101,004
cytolytic granule membrane
cellular_component
The lipid bilayer surrounding the cytolytic granule.
[ "PMID:17272266", "PMID:21247065" ]
null
[]
[]
[]
[]
[]
[ "GO:0005765" ]
[ "part_of GO:0044194" ]
[ "part_of" ]
[ "GO:0044194" ]
[ "GO:0005765", "GO:0044194" ]
[]
[]
[]
[]
[]
[]
mec
2015-12-15T04:32:00Z
false
true
5
GO:0101005
101,005
deubiquitinase activity
molecular_function
An isopeptidase activity that cleaves ubiquitin from a target protein to which it is conjugated.
[ "GOC:mec", "PMID:30783221" ]
There are two main classes of deubiquitinating enzymes: cysteine proteases (i.e., thiol dependent) and metalloproteases.
[ "ubiquitinyl hydrolase activity" ]
[ "EXACT" ]
[ "GO:1904265" ]
[]
[ "Reactome:R-HSA-9674127 \"USP30 deubiquitinates ATM dimer:Ub-p-PEX5\"", "Reactome:R-HSA-9929353 \"Deubiquitination of CD274\"" ]
[ "GO:0019783" ]
[]
[]
[]
[ "GO:0019783" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/17398\" xsd:anyURI" ]
mec
2016-02-08T09:39:38Z
false
true
5
GO:0101006
101,006
protein histidine phosphatase activity
molecular_function
Catalysis of the reaction: protein histidine phosphate + H2O = protein histidine + phosphate.
[ "EC:3.9.1.3" ]
This eukaryotic enzyme dephosphorylates phosphorylated histidine residues within proteins and peptides. The enzyme acts on phosphate groups attached to both the pros- (RHEA:47964) and tele- (RHEA:47960) nitrogen atoms, but the pros- position is somewhat preferred (by a factor of two at the most) (EC:3.9.1.3).
[ "phosphohistidine phosphatase activity" ]
[ "BROAD" ]
[ "GO:0008969" ]
[]
[ "EC:3.9.1.3", "RHEA:47960", "RHEA:47964" ]
[ "GO:0004721", "GO:0016825" ]
[]
[]
[]
[ "GO:0004721", "GO:0016825" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:3.9.1.3", "skos:narrowMatch RHEA:47960", "skos:narrowMatch RHEA:47964", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21517\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
8
GO:0101007
101,007
obsolete negative regulation of transcription from RNA polymerase II promoter in response to salt stress
biological_process
OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under salt stress. The stress is usually an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ...
[ "GOC:mec" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000122", "GO:0071472" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12739\" xsd:anyURI" ]
mec
null
true
true
9
GO:0101008
101,008
obsolete negative regulation of transcription from RNA polymerase II promoter in response to increased salt
biological_process
OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
[ "GOC:mec" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000122", "GO:0071472" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12739\" xsd:anyURI" ]
mec
null
true
true
9
GO:0101014
101,014
[isocitrate dehydrogenase (NADP+)] phosphatase activity
molecular_function
Catalysis of the reaction: [isocitrate dehydrogenase] phosphate + H2O = [isocitrate dehydrogenase] + phosphate.
[ "MetaCyc:DEPHOSICITDEHASE-RXN", "PMID:6292732" ]
null
[ "isocitrate dehydrogenase kinase/phosphatase activity" ]
[ "BROAD" ]
[]
[]
[ "MetaCyc:DEPHOSICITDEHASE-RXN" ]
[ "GO:0004721" ]
[]
[]
[]
[ "GO:0004721" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30390\" xsd:anyURI" ]
null
null
false
true
1
GO:0101016
101,016
FMN-binding domain binding
molecular_function
Binding to the FMN-binding domain of a protein.
[ "PMID:15752726" ]
null
[]
[]
[]
[]
[]
[ "GO:0019904" ]
[]
[]
[]
[ "GO:0019904" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0101017
101,017
regulation of mitotic DNA replication initiation from late origin
biological_process
Any process that modulates the frequency, rate or extent of firing from a late origin of replication involved in mitotic DNA replication.
[ "PMID:26436827" ]
null
[ "regulation of late replication origin firing" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:1903466" ]
[]
[]
[]
[ "GO:1903466" ]
[]
[]
[]
[]
[]
[]
mec
null
false
true
7
GO:0101018
101,018
negative regulation of mitotic DNA replication initiation from late origin
biological_process
Any process that stops, prevents or reduces the frequency, rate or extent of firing from a late origin of replication involved in mitotic DNA replication.
[ "PMID:26436827" ]
null
[ "negative regulation of late replication origin firing" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0101017", "GO:1903467" ]
[]
[]
[]
[ "GO:0101017", "GO:1903467" ]
[]
[]
[]
[]
[]
[]
mec
null
false
true
5
GO:0101019
101,019
nucleolar exosome (RNase complex)
cellular_component
A ribonuclease complex that has 3-prime to 5-prime distributive hydrolytic exoribonuclease activity and in some taxa (e.g. yeast) endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of ...
[ "PMID:17174896", "PMID:20531386", "PMID:26726035" ]
null
[]
[]
[]
[]
[]
[ "GO:0000176" ]
[ "part_of GO:0005730" ]
[ "part_of" ]
[ "GO:0005730" ]
[ "GO:0000176", "GO:0005730" ]
[ "GO:0000178", "part_of GO:0005730" ]
[]
[]
[]
[]
[]
bhm
null
false
true
4
GO:0101020
101,020
estrogen 16-alpha-hydroxylase activity
molecular_function
Catalysis of the reaction: estrogen + reduced [NADPH--hemoprotein reductase] + O2 = 16-alpha-hydroxyestrogen + oxidized [NADPH--hemoprotein reductase] + H2O.
[ "GOC:BHF" ]
null
[ "oestrogen 16-alpha-hydroxylase activity" ]
[ "EXACT" ]
[]
[]
[ "RHEA:47204", "RHEA:47332" ]
[ "GO:0008395", "GO:0016712" ]
[]
[]
[]
[ "GO:0008395", "GO:0016712" ]
[]
[]
[]
[]
[]
[ "skos:narrowMatch RHEA:47204", "skos:narrowMatch RHEA:47332", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29025\" xsd:anyURI" ]
null
null
false
true
8
GO:0101021
101,021
estrogen 2-hydroxylase activity
molecular_function
Catalysis of the reaction: estrogen + reduced [NADPH--hemoprotein reductase] + O2 = 2-hydroxyestrogen + H+ + H2O + oxidized [NADPH--hemoprotein reductase].
[ "GOC:BHF", "GOC:rl", "PMID:14559847" ]
null
[ "oestrogen 2-hydroxylase activity" ]
[ "EXACT" ]
[]
[]
[ "RHEA:47208", "RHEA:47212" ]
[ "GO:0008395", "GO:0016712" ]
[]
[]
[]
[ "GO:0008395", "GO:0016712" ]
[]
[]
[]
[]
[]
[ "skos:narrowMatch RHEA:47208", "skos:narrowMatch RHEA:47212", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29035\" xsd:anyURI" ]
null
null
false
true
7
GO:0101023
101,023
vascular endothelial cell proliferation
biological_process
The multiplication or reproduction of blood vessel endothelial cells, resulting in the expansion of a cell population.
[ "GOC:BHF", "GOC:BHF_telomere", "GOC:nc", "PMID:23201774" ]
null
[]
[]
[]
[]
[]
[ "GO:0001935" ]
[]
[]
[]
[ "GO:0001935" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0101024
101,024
mitotic nuclear membrane organization
biological_process
A mitotic cell cycle process which results in the assembly, arrangement, or disassembly of the nuclear inner or outer membrane during mitosis.
[ "GOC:vw", "PMID:15147872" ]
This process only occurs in organisms which undergo 'closed mitosis' without nuclear breakdown.
[ "nuclear membrane organization involved in mitotic nuclear division" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0071763", "GO:1903047" ]
[ "part_of GO:0140014" ]
[ "part_of" ]
[ "GO:0140014" ]
[ "GO:0071763", "GO:0140014", "GO:1903047" ]
[ "GO:0071763", "part_of GO:0140014" ]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19949\" xsd:anyURI" ]
null
null
false
true
2
GO:0101025
101,025
nuclear membrane biogenesis
biological_process
The process in which a nuclear membrane is synthesized, aggregates, and bonds together.
[ "GOC:vw" ]
null
[]
[]
[]
[]
[]
[ "GO:0044091" ]
[ "part_of GO:0071763" ]
[ "part_of" ]
[ "GO:0071763" ]
[ "GO:0044091", "GO:0071763" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0101026
101,026
mitotic nuclear membrane biogenesis
biological_process
A process in which the nuclear inner or outer membrane is synthesized, aggregates, and bonds together during mitotic nuclear division.
[ "GOC:vw", "PMID:26869222" ]
null
[ "nuclear membrane biogenesis involved in mitotic nuclear division" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0061024", "GO:0101025", "GO:1903047" ]
[ "part_of GO:0140014" ]
[ "part_of" ]
[ "GO:0140014" ]
[ "GO:0061024", "GO:0101025", "GO:0140014", "GO:1903047" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0101027
101,027
optical nerve axon regeneration
biological_process
The regrowth of axons of the optical nerve following their loss or damage.
[ "GOC:pga", "PMID:16699509" ]
null
[]
[]
[]
[]
[]
[ "GO:0031103" ]
[]
[]
[]
[ "GO:0031103" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0101028
101,028
obsolete positive regulation of liquid surface tension
biological_process
OBSOLETE. Any process that activates or increases the surface tension of a liquid.
[ "GOC:sl", "PMID:20949060" ]
Never been used.
[ "positive regulation of surface tension of a liquid" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
3
GO:0101029
101,029
obsolete negative regulation of liquid surface tension
biological_process
OBSOLETE. Any process that prevents or reduces the surface tension of a liquid.
[ "GOC:sl", "PMID:20949060" ]
Never been used.
[ "negative regulation of surface tension of a liquid" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
5
GO:0101030
101,030
obsolete tRNA-guanine transglycosylation
biological_process
OBSOLETE. The modification of a tRNA anticodon loop by replacing guanine with queuonine. Reaction is tRNA guanine + queuine = tRNA queuine + guanine.
[ "GOC:PomBase", "GOC:vw", "PMID:24911101" ]
The reason for obsoletion is that this term represents a molecular function.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0008479" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27782\" xsd:anyURI" ]
null
null
true
true
9
GO:0102001
102,001
isoleucine N-monooxygenase (oxime forming) activity
molecular_function
Catalysis of the reaction: L-isoleucine + 2 O2 + 2 NADPH(4-) + 2 H+ = (E)-2-methylbutanal oxime + 2 NADP(3-) + carbon dioxide + 3 H2O.
[ "EC:1.14.14.39" ]
null
[]
[]
[]
[]
[ "EC:1.14.14.39", "MetaCyc:1.14.13.117-RXN", "RHEA:28602" ]
[ "GO:0016709" ]
[]
[]
[]
[ "GO:0016709" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.14.39", "skos:exactMatch RHEA:28602", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
4
GO:0102002
102,002
valine N-monooxygenase (oxime forming) activity
molecular_function
Catalysis of the reaction: L-valine + 2 O2 + 2 NADPH(4-) + 2 H+ = (E)-2-methylpropanal oxime + 2 NADP(3-) + carbon dioxide + 3 H2O.
[ "EC:1.14.14.38" ]
null
[]
[]
[]
[]
[ "EC:1.14.14.38", "MetaCyc:1.14.13.118-RXN", "RHEA:28606" ]
[ "GO:0016709" ]
[]
[]
[]
[ "GO:0016709" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.14.38", "skos:exactMatch RHEA:28606", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
7
GO:0102003
102,003
acyl-lipid (11-3)-desaturase activity
molecular_function
Catalysis of the reaction: an (11Z,14Z)-icosadienoyl-containing glycerolipid + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = an (8Z,11Z,14Z)-icosatrienoyl-containing glycerolipid + 2 Fe(III)-[cytochrome b5] + 2 H2O or an (11Z,14Z,17Z)-icosatrienoyl-containing glycerolipid + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = an (8Z,11Z,14...
[ "EC:1.14.19.4" ]
null
[ "acyl-lipid 8-desaturase", "Delta(8)-desaturase", "Delta8-sphingolipid desaturase activity" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "EC:1.14.19.4", "MetaCyc:RXN-16099", "MetaCyc:RXN-16101", "RHEA:46792", "RHEA:46796" ]
[ "GO:0016717" ]
[]
[]
[]
[ "GO:0016717" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.19.4", "skos:narrowMatch MetaCyc:RXN-16099", "skos:narrowMatch MetaCyc:RXN-16101", "skos:narrowMatch RHEA:46792", "skos:narrowMatch RHEA:46796", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/25968\" xsd:anyURI", "term_tracker_item \"https://github.com/g...
null
null
false
true
8
GO:0102004
102,004
obsolete 2-octaprenyl-6-hydroxyphenol methylase activity
molecular_function
OBSOLETE. Catalysis of the reaction: 3-(all-trans-octaprenyl)benzene-1,2-diol + S-adenosyl-L-methionine = H+ + 2-methoxy-6-(all-trans-octaprenyl)phenol + S-adenosyl-L-homocysteine.
[ "GOC:curators" ]
This term was obsoleted because it is not known to be catalyzed by any gene product.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28848\" xsd:anyURI" ]
null
null
true
true
4
GO:0102006
102,006
obsolete 4-methyl-2-oxopentanoate dehydrogenase activity
molecular_function
OBSOLETE. Catalysis of the reaction: 4-methyl-2-oxopentanoate + coenzyme A(4-) + NAD(1-) = isovaleryl-CoA(4-) + carbon dioxide + NADH(2-).
[ "GOC:curators" ]
The reason for obsoletion is that this term is equivalent to branched-chain alpha-keto acid dehydrogenase activity.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26124\" xsd:anyURI" ]
null
null
true
true
2
GO:0102007
102,007
acyl-L-homoserine-lactone lactonohydrolase activity
molecular_function
Catalysis of the reaction: H2O + an N-acyl-L-homoserine lactone = H+ + an N-acyl-L-homoserine.
[ "EC:3.1.1.81" ]
null
[]
[]
[]
[]
[ "EC:3.1.1.81", "MetaCyc:3.1.1.81-RXN", "Reactome:R-HSA-8932633 \"PON1,2,3:Ca2+ dimers hydrolyse 5-HETEL to 5-HETE\"", "Reactome:R-HSA-9756136 \"PON1,3 hydrolyse 2-OH-ATVL to 2-OH-ATV\"", "Reactome:R-HSA-9756150 \"PON1,3 hydrolyse 4-OH-ATVL to 4-OH-ATV\"", "Reactome:R-HSA-9756177 \"PON1,3 hydrolyse ATVL to...
[ "GO:0046573" ]
[]
[]
[]
[ "GO:0046573" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:3.1.1.81", "skos:exactMatch RHEA:22576", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
3
GO:0102013
102,013
ATPase-coupled L-glutamate tranmembrane transporter activity
molecular_function
Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: L-glutamate(out) + ATP + H2O = L-glutamate(in) + ADP + phosphate + H+.
[ "RHEA:29035" ]
null
[ "L-glutamate-importing ATPase activity" ]
[ "RELATED" ]
[]
[]
[ "MetaCyc:ABC-13-RXN", "RHEA:29035" ]
[ "GO:0015426" ]
[]
[]
[]
[ "GO:0015426" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:29035", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30815\" xsd:anyURI" ]
null
null
false
true
5
GO:0102014
102,014
beta-D-galactose-importing ATPase activity
molecular_function
Catalysis of the reaction: ATP(4-) + beta-D-galactoside + H2O = ADP(3-) + hydrogenphosphate + beta-D-galactoside + H+.
[ "RHEA:30011" ]
null
[]
[]
[]
[]
[ "RHEA:30011" ]
[ "GO:0015407" ]
[]
[]
[]
[ "GO:0015407" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:30011", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26941\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28199\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
8
GO:0102025
102,025
ABC-type thiosulfate transporter activity
molecular_function
Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + thiosulfate(out) = ADP + phosphate + thiosulfate(in).
[ "GOC:mlg", "GOC:pz" ]
null
[ "ATPase-coupled thiosulfate transmembrane transporter activity", "thiosulfate transmembrane-transporting ATPase activity", "thiosulphate ABC transporter activity" ]
[ "RELATED", "RELATED", "EXACT" ]
[ "GO:0032146" ]
[]
[ "MetaCyc:ABC-7-RXN", "RHEA:29871" ]
[ "GO:0015117", "GO:0140359" ]
[]
[]
[]
[ "GO:0015117", "GO:0140359" ]
[]
[]
[]
[]
[]
[ "skos:broadMatch EC:7.3.2.3", "skos:exactMatch RHEA:29871", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14642\" xsd:anyURI" ]
null
null
false
true
5
GO:0102027
102,027
obsolete S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity
molecular_function
OBSOLETE. Catalysis of the reaction: 2-demethylmenaquinol-8 + S-adenosyl-L-methionine = menaquinol-8 + H+ + S-adenosyl-L-homocysteine.
[ "GOC:pz" ]
This term was obsoleted because it represents a specific substrate of demethylmenaquinone methyltransferase activity ; GO:0043770.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0043770" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28070\" xsd:anyURI" ]
null
null
true
true
7
GO:0102028
102,028
obsolete cystathionine gamma-synthase activity (acts on O-phosphohomoserine)
molecular_function
OBSOLETE. Catalysis of the reaction: L-cysteine + O-phosphonato-L-homoserine = L-cystathionine + hydrogenphosphate.
[ "GOC:pz", "PMID:5922970", "PMID:9531508" ]
The reason for obsoletion is that this term is equivalent to GO:0003962 cystathionine gamma-synthase activity, with the same EC cross reference.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003962" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28545\" xsd:anyURI" ]
null
null
true
true
2
GO:0102029
102,029
D-lactate dehydrogenase (quinone) activity
molecular_function
Catalysis of the reaction: (R)-lactate + an ubiquinone = pyruvate + an ubiquinol.
[ "PMID:10944213", "PMID:4575624", "RHEA:51468" ]
null
[ "D-lactate dehydrogenase activity" ]
[ "BROAD" ]
[]
[]
[ "EC:1.1.5.12", "MetaCyc:DLACTDEHYDROGFAD-RXN", "RHEA:29079", "RHEA:51468" ]
[ "GO:0047809", "GO:1990464" ]
[]
[]
[]
[ "GO:0047809", "GO:1990464" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.1.5.12", "skos:exactMatch RHEA:51468", "skos:narrowMatch RHEA:29079", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30138\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
4
GO:0102030
102,030
obsolete dTDP-L-rhamnose synthetase activity
molecular_function
OBSOLETE. Catalysis of the reaction: dTDP-6-deoxy-beta-L-mannose + NAD+ = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + NADH + H+.
[ "GOC:pz" ]
This term was obsoleted because there is no evidence that this activity exists.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/25865\" xsd:anyURI" ]
null
null
true
true
3
GO:0102031
102,031
4-acetamido-4,6-dideoxy-D-galactose transferase activity
molecular_function
Catalysis of the reaction: dTDP-4-acetamido-4,6-dideoxy-alpha-D-galactose + beta-D-ManNAcA-(1->4)-alpha-D-GlcNAc-1-diphospho-ditrans,polycis-undecaprenol = H+ + alpha-D-FucNAc4-(1->4)-beta-D-ManNAcA-(1->4)-D-GlcNAc-undecaprenyl diphosphate + dTDP.
[ "EC:2.4.1.325", "GOC:pz" ]
null
[]
[]
[]
[]
[ "EC:2.4.1.325", "MetaCyc:FUC4NACTRANS-RXN", "RHEA:28759" ]
[ "GO:0016758" ]
[]
[]
[]
[ "GO:0016758" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.4.1.325", "skos:exactMatch RHEA:28759", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
1
GO:0102033
102,033
long-chain fatty acid omega-hydroxylase activity
molecular_function
Catalysis of the reaction: an omega-methyl-long-chain fatty acid + O2 + reduced [NADPH--hemoprotein reductase] = an omega-hydroxy-long-chain fatty acid + H+ + H2O + oxidized [NADPH--hemoprotein reductase]. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.
[ "GOC:krc", "PMID:18544608", "RHEA:56748" ]
While there is not universal consensus on the lengths of short-, medium-, long- and very-long-chain fatty acids, the GO uses the definitions in ChEBI (see CHEBI:26666, CHEBI:59554, CHEBI:15904 and CHEBI:27283).
[ "cytochrome P450 fatty acid omega-hydroxylase activity" ]
[ "RELATED" ]
[]
[]
[ "EC:1.14.14.80", "MetaCyc:RXN-16394", "RHEA:40199", "RHEA:40203", "RHEA:41728", "RHEA:46356", "RHEA:48664", "RHEA:56748", "RHEA:60940", "RHEA:78611" ]
[ "GO:0120250" ]
[]
[]
[]
[ "GO:0120250" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.14.80", "skos:exactMatch RHEA:56748", "skos:narrowMatch RHEA:40199", "skos:narrowMatch RHEA:40203", "skos:narrowMatch RHEA:41728", "skos:narrowMatch RHEA:46356", "skos:narrowMatch RHEA:48664", "skos:narrowMatch RHEA:60940", "skos:narrowMatch RHEA:78611", "term_tracker_item...
null
null
false
true
5
GO:0102035
102,035
obsolete 2-methylpropanoyl-CoA dehydrogenase activity
molecular_function
OBSOLETE. Catalysis of the reaction: 2-methylpropanoyl-CoA + H+ + oxidized [electron-transfer flavoprotein] = (2E)-2-methylpropenoyl-CoA + reduced [electron-transfer flavoprotein].
[ "PMID:3988734" ]
This term was obsoleted because it represents a specific substrate of short-chain 2-methyl fatty acyl-CoA dehydrogenase activity ; GO:0003853.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003853" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26437\" xsd:anyURI" ]
null
null
true
true
1
GO:0102036
102,036
methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase activity
molecular_function
Catalysis of the reaction: a tetrahydrofolate + a [methyl-Co(III) corrinoid Fe-S protein] = an N5-methyl-tetrahydrofolate + a [Co(I) corrinoid Fe-S protein].
[ "EC:2.1.1.258", "GOC:pz", "PMID:7928975" ]
null
[]
[]
[]
[]
[ "EC:2.1.1.258", "MetaCyc:METHCOCLTH-RXN", "RHEA:45200" ]
[ "GO:0008168" ]
[]
[]
[]
[ "GO:0008168" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.1.1.258", "skos:exactMatch RHEA:45200", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
8
GO:0102037
102,037
obsolete 4-nitrotoluene monooxygenase activity
molecular_function
OBSOLETE. Catalysis of the reaction: H+ + 4-nitrotoluene + NADH + O2 = 4-nitrobenzyl alcohol + NAD+ + H2O.
[ "GOC:pz" ]
This term was obsoleted because it represents a specific substrate.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31581\" xsd:anyURI" ]
null
null
true
true
6
GO:0102038
102,038
obsolete 4-nitrobenzyl alcohol oxidase activity
molecular_function
OBSOLETE. Catalysis of the reaction: 4-nitrobenzyl alcohol + O2 = 4-nitrobenzaldehyde + hydrogen peroxide.
[ "GOC:pz" ]
This term was obsoleted because there is no evidence that this reaction exists.
[]
[]
[]
[]
[ "MetaCyc:R362-RXN" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31530\" xsd:anyURI" ]
null
null
true
true
2
GO:0102039
102,039
NADH-dependent peroxiredoxin activity
molecular_function
Catalysis of the reaction: a hydroperoxide + H+ + NADH = an alcohol + H2O + NAD+.
[ "GOC:pz", "PMID:12517450", "RHEA:62628" ]
null
[ "alkylhydroperoxide reductase activity" ]
[ "EXACT" ]
[]
[]
[ "EC:1.11.1.26", "MetaCyc:R4-RXN", "Reactome:R-HSA-1222526 \"AhpC reduces peroxidated lipids\"", "RHEA:62628" ]
[ "GO:0051920" ]
[]
[]
[]
[ "GO:0051920" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.11.1.26", "skos:exactMatch RHEA:62628", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
9
GO:0102040
102,040
obsolete fumarate reductase (menaquinone)
molecular_function
OBSOLETE. Catalysis of the reaction: fumarate + a menaquinol = succinate + a menaquinone.
[ "GOC:pz", "PMID:11850430" ]
This term was obsoleted because EC merged it into the more general succinate dehydrogenase (ubiquinone) activity ; GO:0008177.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0008177" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/17091\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26087\" xsd:anyURI" ]
null
null
true
true
3
GO:0102041
102,041
7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase activity
molecular_function
Catalysis of the reaction: 4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate + (2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl diphosphate = N-[(7,8-dihydropterin-6-yl)methyl]-4-(beta-D-ribofuranosyl)aniline 5'-phosphate + diphosphoric acid.
[ "RHEA:35951" ]
null
[]
[]
[]
[]
[ "EC:2.5.1.105", "MetaCyc:RXN-10009", "RHEA:35951" ]
[ "GO:0016765" ]
[]
[]
[]
[ "GO:0016765" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.5.1.105", "skos:exactMatch RHEA:35951", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
1
GO:0102042
102,042
dehydroquinate synthase activity
molecular_function
Catalysis of the reaction: 2-amino-2,3,7-trideoxy-D-lyxo-hept-6-ulosonic acid + H2O + NAD = 3-dehydroquinate + ammonium + NADH + H+.
[ "GOC:pz", "RHEA:25956" ]
null
[]
[]
[]
[]
[ "EC:1.4.1.24", "MetaCyc:RXN-10032", "RHEA:25956" ]
[ "GO:0016639" ]
[]
[]
[]
[ "GO:0016639" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.4.1.24", "skos:exactMatch RHEA:25956", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
2
GO:0102043
102,043
isopentenyl phosphate kinase activity
molecular_function
Catalysis of the reaction: isopentenyl phosphate(2-) + ATP(4-) = isopentenyl diphosphate(3-) + ADP(3-).
[ "GOC:pz", "PMID:19928876", "RHEA:33963" ]
null
[]
[]
[]
[]
[ "EC:2.7.4.26", "MetaCyc:RXN-10068", "RHEA:33963" ]
[ "GO:0016776" ]
[]
[]
[]
[ "GO:0016776" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.7.4.26", "skos:exactMatch RHEA:33963", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
6
GO:0102044
102,044
obsolete 3-chlorobenzoate-4,5-oxygenase activity
molecular_function
OBSOLETE. Catalysis of the reaction: 3-chlorobenzoate + O2 + a reduced electron acceptor = 3-chlorobenzoate-cis-4,5-diol + an oxidized electron acceptor.
[ "GOC:pz" ]
This term was obsoleted because it represents a specific substrate.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31581\" xsd:anyURI" ]
null
null
true
true
7
GO:0102045
102,045
3-chlorobenzoate-3,4-oxygenase activity
molecular_function
Catalysis of the reaction: 3-chlorobenzoate + O2 + a reduced electron acceptor = 3-chlorobenzoate-cis-3,4-diol + an oxidized electron acceptor.
[ "GOC:pz", "PMID:8285670" ]
null
[]
[]
[]
[]
[ "MetaCyc:RXN-10422" ]
[ "GO:0016708" ]
[]
[]
[]
[ "GO:0016708" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0102046
102,046
3,4-dichlorobenzoate-4,5-oxygenase activity
molecular_function
Catalysis of the reaction: 3,4-dichlorobenzoate + O2 + a reduced electron acceptor = 3,4-dichlorobenzoate-cis-4,5-diol + an oxidized electron acceptor.
[ "GOC:pz", "PMID:9322760" ]
null
[]
[]
[]
[]
[ "MetaCyc:RXN-10427" ]
[ "GO:0016708" ]
[]
[]
[]
[ "GO:0016708" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0102047
102,047
indole-3-acetyl-glycine synthetase activity
molecular_function
Catalysis of the reaction: indole-3-acetate + glycine + ATP(4-) = H+ + indole-3-acetyl-glycine + AMP(2-) + diphosphoric acid.
[ "GOC:pz", "PMID:15659623" ]
null
[]
[]
[]
[]
[ "MetaCyc:RXN-10429" ]
[ "GO:0016879" ]
[]
[]
[]
[ "GO:0016879" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3