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GO

Dataset card Data Studio Files
xet
 Community
go_id
string
go_numeric_id
int64
name
string
namespace
string
definition
string
definition_xrefs
list
comment
string
synonyms
list
synonym_scopes
list
alt_ids
list
subsets
list
xrefs
list
is_a_ids
list
relationship_edges
list
relationship_types
list
relationship_target_ids
list
parent_ids
list
intersection_of
list
union_of
list
disjoint_from
list
replaced_by
list
consider
list
property_values
list
created_by
string
creation_date
string
is_obsolete
bool
in_go_basic
bool
split_bucket
int64
GO:0106143
106,143
tRNA (m7G46) methyltransferase complex
cellular_component
A protein complex involved in the catalysis of the formation of the modified nucleotide 7-methylguanine (at position 46 in certain tRNAs, such as tRNA(phe) and tRNA(met). In yeast, it is a heterotetramer of two subunits, Trm8 (catalytic) and Trm82 (WD repeat).
[ "GOC:vw", "PMID:15811913", "PMID:1738232", "PMID:18164779", "PMID:18184583" ]
null
[ "Trm8-Trm82 complex", "tRNA (m7G46) methyltransferase", "tRNA m7G methylation complex" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0043527" ]
[]
[]
[]
[ "GO:0043527" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27929\" xsd:anyURI" ]
hjd
2018-09-07T14:53:29Z
false
true
9
GO:0106144
106,144
fraxetin 5-hydroxylase activity
molecular_function
Catalyzes the reaction fraxetin+ NAD(P)H + 02= sideretin + NAD(P)(+) + H20.
[ "GOC:lr", "PMID:29581584", "RHEA:57844" ]
null
[]
[]
[]
[]
[ "EC:1.14.14.164", "RHEA:57844" ]
[ "GO:0016709" ]
[]
[]
[]
[ "GO:0016709" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.14.164", "skos:exactMatch RHEA:57844", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2018-09-07T18:24:41Z
false
true
6
GO:0106145
106,145
scopoletin 8-hydroxylase activity
molecular_function
Catalyzes of the reaction: scopoletin + 2-oxoglutarate+O2=fraxetin +succinate+ CO2).
[ "GOC:lr", "PMID:29361149", "PMID:29581584", "RHEA:57848" ]
null
[]
[]
[]
[]
[ "EC:1.14.11.60", "RHEA:57848" ]
[ "GO:0016709" ]
[]
[]
[]
[ "GO:0016709" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.11.60", "skos:exactMatch RHEA:57848", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2018-09-07T18:28:16Z
false
true
7
GO:0106146
106,146
sideretin biosynthesis
biological_process
The chemical reactions and pathways resulting in the formation of sideretin.
[ "GOC:lr", "PMID:29581584" ]
null
[]
[]
[]
[]
[]
[ "GO:0009805" ]
[]
[]
[]
[ "GO:0009805" ]
[]
[]
[]
[]
[]
[]
hjd
2018-09-07T18:31:30Z
false
true
4
GO:0106147
106,147
fraxetin biosynthesis
biological_process
The chemical reactions and pathways resulting in the formation of fraxetin.
[ "GOC:lr", "PMID:29581584" ]
null
[]
[]
[]
[]
[]
[ "GO:0009805" ]
[]
[]
[]
[ "GO:0009805" ]
[]
[]
[]
[]
[]
[]
hjd
2018-09-07T18:32:47Z
false
true
8
GO:0106148
106,148
4-hydroxyindole-3- carbonyl nitrile biosynthesis
biological_process
The chemical reactions and pathways resulting in the formation of 4-hydroxyindole-3- carbonyl nitrile (4-OH-ICN), a cyanogenic glucoside.
[ "GOC:lr", "PMID:26352477" ]
null
[]
[]
[]
[]
[]
[ "GO:0019756" ]
[]
[]
[]
[ "GO:0019756" ]
[]
[]
[]
[]
[]
[]
hjd
2018-09-10T19:42:16Z
false
true
3
GO:0106150
106,150
zearalenone biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of zearalenone, a mycotoxin produced by several Fusarium species, is most commonly found as a contaminant in stored grain and has chronic estrogenic effects on mammals.
[ "GOC:ach", "PMID:16517624", "PMID:20578001" ]
null
[]
[]
[]
[]
[]
[ "GO:0033068", "GO:0043386", "GO:0046189" ]
[]
[]
[]
[ "GO:0033068", "GO:0043386", "GO:0046189" ]
[]
[]
[]
[]
[]
[]
hjd
2018-09-14T17:08:18Z
false
true
7
GO:0106151
106,151
CNBH domain intrinsic ligand binding
molecular_function
Interacting selectivity and noncovalently with a cyclic nucleotide mimicking protein motif that is part of the same protein. The CNBHD is a domain on KCNH channels that creates a binding pocket on the KCNH channel that resembles the cyclic nucleotide- binding domain on other ion channels. It binds to a peptide motif th...
[ "GOC:cvs", "PMID:27025590", "PMID:29567795" ]
It is unclear if the motif bound by CNBHD is a specific motif or just a beta sheet with the appropriate amino acids.
[]
[]
[]
[]
[]
[ "GO:0005515" ]
[]
[]
[]
[ "GO:0005515" ]
[]
[]
[]
[]
[]
[]
hjd
2018-09-18T20:47:35Z
false
true
4
GO:0106153
106,153
obsolete phosphorylated histone binding
molecular_function
OBSOLETE. Binding to a histone in which a residue has been modified by phosphorylation.
[ "GOC:mah", "PMID:20679485" ]
This term was obsoleted in favor of histone reader avctivity ; GO:0140566.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0140566" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27427\" xsd:anyURI" ]
hjd
2018-09-19T17:23:06Z
true
true
2
GO:0106154
106,154
perithecium formation
biological_process
The process of producing flask-shaped fruiting bodies, called perithecia. In the ascomycetous fungi such as Neurospora crassa and Sordaria macrospora, these perithecia are formed in the sexual phase and they discharge ascospores through the ostiolum at the tip of the perithecial neck.
[ "DOI:10.1007/978-3-642-00286-1_2", "GOC:ach", "PMID:19547974", "PMID:21134480", "PMID:25311923" ]
null
[]
[]
[]
[]
[]
[ "GO:0120165" ]
[]
[]
[]
[ "GO:0120165" ]
[]
[]
[]
[]
[]
[]
hjd
2018-09-19T19:12:53Z
false
true
3
GO:0106155
106,155
peptidyl-lysine 3-dioxygenase activity
molecular_function
Catalysis of the reaction: protein L-lysine + 2-oxoglutarate + O2 = protein 3-hydroxy-L-lysine + succinate + CO2.
[ "GOC:al", "PMID:29915238", "RHEA:57152" ]
null
[]
[]
[]
[]
[ "EC:1.14.11.63", "Reactome:R-HSA-9629578 \"JMJD7 dimer hydroxlates a lysine residue of DRG2\"", "Reactome:R-HSA-9629591 \"JMJD7 dimer hydroxlates a lysine residue of DRG1\"", "RHEA:57152" ]
[ "GO:0016706", "GO:0140096" ]
[]
[]
[]
[ "GO:0016706", "GO:0140096" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.11.63", "skos:exactMatch RHEA:57152", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2018-11-15T20:09:45Z
false
true
8
GO:0106156
106,156
peptidyl-lysine 4-dioxygenase activity
molecular_function
Catalysis of the reaction: protein L-lysine + 2-oxoglutarate + O2 = protein 4-hydroxy-L-lysine + succinate + CO2.
[ "GOC:pde", "PMID:24486019", "RHEA:57156" ]
null
[]
[]
[]
[]
[ "Reactome:R-HSA-9629946 \"JMJD4:Fe2+ hydroxylates a lysine residue of ETF1\"", "RHEA:57156" ]
[ "GO:0016706", "GO:0140096" ]
[]
[]
[]
[ "GO:0016706", "GO:0140096" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:57156", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2018-11-26T14:59:18Z
false
true
4
GO:0106157
106,157
peptidyl-arginine 3-dioxygenase activity
molecular_function
Catalyzes the reaction: 2-oxoglutarate + [protein]-L-arginine + O2 = [protein]-(3R)-3-hydroxy-L-arginine + CO2 + succinate.
[ "PMID:29563586" ]
null
[ "L-arginine 3-hydroxylase activity" ]
[ "EXACT" ]
[ "GO:0140554" ]
[]
[ "EC:1.14.11.73", "Reactome:R-HSA-9629869 \"KDM8:Fe2+ hydroxylates an arginine residue of RPS6\"", "Reactome:R-HSA-9629888 \"KDM8:Fe2+ hydroxylates an arginine residue of RCCD1\"", "RHEA:41556", "RHEA:56744", "RHEA:57160", "RHEA:57164" ]
[ "GO:0016706", "GO:0140096" ]
[]
[]
[]
[ "GO:0016706", "GO:0140096" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.11.73", "skos:exactMatch RHEA:56744", "skos:narrowMatch RHEA:41556", "skos:narrowMatch RHEA:57160", "skos:narrowMatch RHEA:57164", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16689\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go...
hjd
2018-11-26T15:05:57Z
false
true
8
GO:0106158
106,158
glycero-3-phosphocholine acyltransferase activity
molecular_function
Catalysis of the reaction:acyl-CoA + glycerophosphocholine = CoA + 1-acyl-sn-glycero-3-phosphocholine.
[ "PMID:18430972", "PMID:27758859", "RHEA:58476" ]
null
[ "glycerophosphocholine O-acyltransferase activity", "GPACT activity" ]
[ "EXACT", "EXACT" ]
[]
[]
[ "RHEA:58476" ]
[ "GO:0016747" ]
[]
[]
[]
[ "GO:0016747" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:58476", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16665\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2018-11-26T21:21:03Z
false
true
1
GO:0106159
106,159
obsolete regulation of small RNA loading onto RISC
biological_process
OBSOLETE. Any process that modulates the frequency, rate or extent small RNA loading onto RISC.
[ "GOC:ha", "PMID:29775584" ]
This term was obsoleted because there is no evidence that this process exists.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22634\" xsd:anyURI" ]
hjd
2018-11-30T15:38:50Z
true
true
2
GO:0106160
106,160
obsolete negative regulation of small RNA loading onto RISC
biological_process
OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of small RNA loading onto RISC.
[ "GOC:ha", "PMID:29775584" ]
This term was obsoleted because there is no evidence that this process exists.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22634\" xsd:anyURI" ]
hjd
2018-11-30T15:42:16Z
true
true
7
GO:0106161
106,161
obsolete positive regulation of small RNA loading onto RISC
biological_process
OBSOLETE. Any process that activates or increases the frequency, rate or extent of small RNA loading onto RISC.
[ "GOC:ha", "PMID:29775584" ]
This term was obsoleted because there is no evidence that this process exists.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22634\" xsd:anyURI" ]
hjd
2018-11-30T15:45:53Z
true
true
9
GO:0106162
106,162
mRNA cytidine N-acetyltransferase activity
molecular_function
Catalysis of the reaction: a cytidine in mRNA + acetyl-CoA + ATP + H2O = ADP + an N(4)-acetylcytidine in mRNA + CoA + H+ + phosphate.
[ "GOC:sp", "PMID:30449621", "RHEA:58480" ]
null
[ "mRNA N-acetyltransferase activity" ]
[ "BROAD" ]
[]
[]
[ "RHEA:58480" ]
[ "GO:0008080", "GO:0140640" ]
[]
[]
[]
[ "GO:0008080", "GO:0140640" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:58480", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI", "terms:contributor \"https://github.com/geneontology/go-ontology/issues/16755\" xsd:anyURI" ]
hjd
2018-12-18T19:19:06Z
false
true
2
GO:0106163
106,163
obsolete regulation of exonucleolytic catabolism of deadenylated mRNA
biological_process
OBSOLETE. Any process that modulates the frequency, rate or extent of exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay.
[ "GOC:vw", "PMID:30601114" ]
The reason for obsoletion is that the term is not clearly defined and usage has been inconsistent.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:1900151" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27171\" xsd:anyURI" ]
hjd
2019-01-15T15:33:08Z
true
true
9
GO:0106164
106,164
obsolete positive regulation of exonucleolytic catabolism of deadenylated mRNA
biological_process
OBSOLETE. Any process that activates or increases the frequency, rate or extent of exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay.
[ "GOC:vw", "PMID:30601114" ]
The reason for obsoletion is that the term is not clearly defined and usage has been inconsistent.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:1900153" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27171\" xsd:anyURI" ]
hjd
2019-01-15T15:39:19Z
true
true
9
GO:0106165
106,165
obsolete negative regulation of exonucleolytic catabolism of deadenylated mRNA
biological_process
OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay.
[ "GOC:vw", "PMID:30601114" ]
The reason for obsoletion is that the term is not clearly defined and usage has been inconsistent.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:1900152" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27171\" xsd:anyURI" ]
hjd
2019-01-15T15:42:13Z
true
true
7
GO:0106166
106,166
spindle pole body-nuclear membrane anchor activity
molecular_function
The binding activity of a molecule that brings together a mitotic spindle pole body and the nuclear membrane, in order to maintain specific membrane location of the spindle pole body.
[ "GOC:vw", "PMID:9763447" ]
null
[ "nuclear membrane-spindle pole body anchor activity", "spindle pole body nuclear membrane anchor activity" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0043495", "GO:0140475" ]
[]
[]
[]
[ "GO:0043495", "GO:0140475" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19119\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20606\" xsd:anyURI" ]
hjd
2019-01-18T15:57:42Z
false
true
3
GO:0106167
106,167
extracellular ATP signaling
biological_process
The series of molecular signals mediated by the detection of extracellular ATP.
[ "GOC:tb", "PMID:12948585", "PMID:20817461", "PMID:29274390" ]
null
[]
[]
[]
[]
[]
[ "GO:0007165", "GO:0071318" ]
[]
[]
[]
[ "GO:0007165", "GO:0071318" ]
[]
[]
[]
[]
[]
[]
hjd
2019-02-06T19:21:44Z
false
true
3
GO:0106172
106,172
COPI-coated vesicle lumen
cellular_component
The volume enclosed by the membrane of a COPI-coated endocytic vesicle.
[ "GOC:pde", "PMID:29535154" ]
null
[]
[]
[]
[]
[]
[ "GO:0060205" ]
[ "part_of GO:0030137" ]
[ "part_of" ]
[ "GO:0030137" ]
[ "GO:0030137", "GO:0060205" ]
[]
[]
[]
[]
[]
[]
hjd
2019-02-11T18:04:08Z
false
true
9
GO:0106173
106,173
COPII-coated vesicle lumen
cellular_component
The volume enclosed by the membrane of a COPII-coated endocytic vesicle.
[ "GOC:pde", "PMID:21172817" ]
null
[]
[]
[]
[]
[]
[ "GO:0060205" ]
[]
[]
[]
[ "GO:0060205" ]
[]
[]
[]
[]
[]
[]
hjd
2019-02-11T18:16:22Z
false
true
6
GO:0106175
106,175
phagolysosome vesicle membrane
cellular_component
The lipid bylayer surrounding a phagolysosome.
[ "GOC:pde", "PMID:29471269" ]
null
[]
[]
[]
[]
[]
[ "GO:0030659" ]
[ "part_of GO:0032010" ]
[ "part_of" ]
[ "GO:0032010" ]
[ "GO:0030659", "GO:0032010" ]
[]
[]
[]
[]
[]
[]
hjd
2019-02-11T19:12:53Z
false
true
2
GO:0106176
106,176
clathrin-coated endocytic vesicle lumen
cellular_component
The volume enclosed by the membrane of a clathrin-coated endocytic vesicle.
[ "GOC:pde", "PMID:2516741" ]
null
[]
[]
[]
[]
[]
[ "GO:0071682" ]
[ "part_of GO:0045334" ]
[ "part_of" ]
[ "GO:0045334" ]
[ "GO:0045334", "GO:0071682" ]
[]
[]
[]
[]
[]
[]
hjd
2019-02-12T15:44:51Z
false
true
7
GO:0106178
106,178
obsolete translocase activity
molecular_function
OBSOLETE. Catalysis the movement of ions or molecules across membranes or their separation within membranes.
[ "GOC:hjd", "http://www.enzyme-database.org/" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-04-05T15:41:06Z
true
true
4
GO:0106179
106,179
obsolete translocase activity acting on inorganic cations and their chelates
molecular_function
OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates.
[ "GOC:hjd", "http://www.enzyme-database.org/" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-04-05T15:45:41Z
true
true
6
GO:0106180
106,180
obsolete translocase activity of hydrons
molecular_function
OBSOLETE. Catalysis of the translocation of hydrons (hydron being the general name for H+ in its natural abundance).
[ "GOC:hjd", "http://www.enzyme-database.org/" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-04-05T15:48:44Z
true
true
8
GO:0106182
106,182
obsolete translocase activity acting on amino acids and peptides.
molecular_function
OBSOLETE. Catalysis of the translocation of amino acids and peptides.
[ "GOC:hjd", "http://www.enzyme-database.org/" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-04-05T15:52:34Z
true
true
6
GO:0106183
106,183
obsolete translocase activity acting on carbohydrates and their derivatives.
molecular_function
OBSOLETE. Catalysis of the translocation of carbohydrates and their derivatives.
[ "GOC:hjd", "http://www.enzyme-database.org/" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-04-05T15:54:25Z
true
true
1
GO:0106184
106,184
obsolete translocation activity acting on other compounds
molecular_function
OBSOLETE. Catalysis of the translocation of other compounds not included in EC:7.1 through EC:7.5 .
[ "GOC:hjd", "http://www.enzyme-database.org/" ]
This term was made obsolete because the name and scope ( other compounds not included in EC:7.1 through EC:7.5 ) is not good ontological practice.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-04-05T15:56:19Z
true
true
9
GO:0106185
106,185
obsolete histone H3-K37 methylation
biological_process
OBSOLETE. The modification of histone H3 by addition of one or more methyl groups to lysine at position 37 of the histone.
[ "GOC:mah", "PMID:30773398" ]
This term was obsoleted because it represents a molecular function.
[ "histone H3 K37 methylation", "histone H3K37me", "histone lysine H3 K37 methylation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0062122" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24261\" xsd:anyURI" ]
hjd
2019-04-24T14:36:23Z
true
true
4
GO:0106186
106,186
cytoplasmic side of plasma membrane, cell tip
cellular_component
The leaflet the plasma membrane at the cell tip that faces the cytoplasm, including any protein embedded in, attached to, or peripherally associated with it.
[ "GOC:vw", "PMID:28292899" ]
null
[]
[]
[]
[]
[]
[ "GO:0009898" ]
[ "part_of GO:0031520" ]
[ "part_of" ]
[ "GO:0031520" ]
[ "GO:0009898", "GO:0031520" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31515\" xsd:anyURI" ]
hjd
2019-05-01T17:48:02Z
false
true
5
GO:0106187
106,187
obsolete translocase activity acting on hydrons linked to oxidoreductase reactions
molecular_function
OBSOLETE. Catalysis of the translocation of hydrons linked to an oxidoreduction reaction.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-07T18:04:40Z
true
true
3
GO:0106188
106,188
obsolete translocase activity acting on hydrons linked the hydrolysis of a nucleoside triphosphate
molecular_function
OBSOLETE. Catalysis of the translocation of hydrons linked to the hydrolysis of a nucleoside triphosphate.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-07T18:09:07Z
true
true
3
GO:0106189
106,189
obsolete translocase activity acting on hydrons linked to the hydrolysis of a diphosphate
molecular_function
OBSOLETE. Catalysis of the translocation of hydrons linked to the hydrolysis of a diphosphate.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-07T18:12:33Z
true
true
4
GO:0106190
106,190
obsolete translocase activity acting on hydrons linked to a decarboxylation reaction
molecular_function
OBSOLETE. Catalysis of the translocation of hydrons linked to a decarboxylation reaction.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-07T18:17:17Z
true
true
1
GO:0106191
106,191
obsolete translocase activity acting on inogranic cations linked to oxidoreductase reactions
molecular_function
OBSOLETE. Catalysis of the translocation of inorganic cations linked to oxidoreductase reactions.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T16:50:07Z
true
true
5
GO:0106192
106,192
obsolete translocase activity acting on inorganic cations and their chelates linked to the hydrolysis of a nucleoside triphosphate
molecular_function
OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates linked to the hydrolysis of a nucleoside triphosphate.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T16:52:54Z
true
true
1
GO:0106193
106,193
obsolete translocase activity acting on inorganic cations and their chelates linked to the hydrolysis of a diphosphate
molecular_function
OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates linked to the hydrolysis of a diphosphate.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T16:55:24Z
true
true
5
GO:0106194
106,194
obsolete translocase activity acting on inorganic cations and their chelates linked to a decarboxylation reaction
molecular_function
OBSOLETE. Catalysis of the transocation of inorganic cations and their chelates linked to a decarboxylation reaction.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T16:58:50Z
true
true
3
GO:0106195
106,195
obsolete translocase activity acting on inorganic anions linked to oxidoreductase reactions
molecular_function
OBSOLETE. Catalysis of the translocation of inorganic anions linked to oxidoreductase reactions.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T18:13:05Z
true
true
3
GO:0106196
106,196
obsolete translocase activity acting on inorganic anions linked to the hydrolysis of a nucleoside triphosphate
molecular_function
OBSOLETE. Catalysis of the translocation of inorganic anions linked to the hydrolysis of a nucleoside triphosphate.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T18:15:35Z
true
true
6
GO:0106197
106,197
obsolete translocase activity acting on inorganic anions linked to the hydrolysis of a diphosphate
molecular_function
OBSOLETE. Catalysis of the translocation of inorganic anions llinked to the hydrolysis of a diphosphate.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T18:17:37Z
true
true
2
GO:0106198
106,198
obsolete translocase activity acting on inorganic anions linked to a decarboxylation reaction
molecular_function
OBSOLETE. Catalysis of the translocation of an inorganic anion linked to a decarboxylation reaction.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T18:20:14Z
true
true
3
GO:0106199
106,199
obsolete translocase activity acting on amino acids and peptides linked to oxidoreductase reactions
molecular_function
OBSOLETE. Catalysis of the translocation of amino acids and peptides linked to oxidoreductase reactions.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T18:23:04Z
true
true
4
GO:0106200
106,200
obsolete translocase activity acting on amio acids and peptides linked to the hydrolysis of a nucleoside triphosphate
molecular_function
OBSOLETE. Catalysis of the translocation of amino acids and peptides linked to the hydrolysis of a nucleoside triphosphate.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T18:25:56Z
true
true
5
GO:0106201
106,201
obsolete translocase activity acting on amino acids and peptides linked to the hydrolysis of a diphosphate
molecular_function
OBSOLETE. Catalysis of the translocation of amino acids and peptides linked to the hydrolysis of a diphosphate.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T18:28:18Z
true
true
5
GO:0106202
106,202
obsolete translocase activity acting on amino acids and peptides linked to a decarboxylation reaction
molecular_function
OBSOLETE. Catalysis of the translocation of amno acids and peptides linked to a decarboxylation reaction.
[ "GOC:hjd", "http://www.enzyme-database.org" ]
This term was made obsolete because the concept of using the non-4 digit EC classes as parent terms for the transporter branch of the onotolgy was consided confusing.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
hjd
2019-05-08T18:30:36Z
true
true
1
GO:0106210
106,210
culmorin biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of culmorin, a sesquiterpenoid fungal metabolite and mycotoxin produced by some ascomycete species such as Fusarium culmorum, F. graminearum, F. venenatum and Leptosphaeria oraemaris.
[ "GOC:ach", "PMID:19880637", "PMID:26673640" ]
null
[ "culmorin anabolism", "culmorin biosynthesis", "culmorin formation", "culmorin synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0016106", "GO:0034312", "GO:0043386", "GO:0051762", "GO:1902653" ]
[]
[]
[]
[ "GO:0016106", "GO:0034312", "GO:0043386", "GO:0051762", "GO:1902653" ]
[]
[]
[]
[]
[]
[]
hjd
2019-05-13T17:30:41Z
false
true
5
GO:0106212
106,212
obsolete centromere detachment from spindle pole body involved in meiotic chromosome organization
biological_process
OBSOLETE. The cell cycle process in which centromeres dissociate from the spindle pole body, contributing to the rearrangement of chromosomes into the orientation characteristic of meiotic prophase I.
[ "GOC:mah", "PMID:27611693" ]
This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
[ "centromere detachment from SPB involved in meiotic chromosome organization", "centromere detachment from spindle pole body involved in chromosome organization involved in meiotic cell cycle" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31306\" xsd:anyURI" ]
hjd
2019-06-25T18:28:39Z
true
true
6
GO:0106213
106,213
obsolete kinetochore disassembly involved in meiotic chromosome organization
biological_process
OBSOLETE. The cell cycle process in which outer kinetochore components delocalize from the centromere, contributing to the rearrangement of chromosomes into the orientation characteristic of meiotic prophase I.
[ "GOC:mah", "PMID:27611693" ]
This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
[ "kinetochore disassembly from spindle pole body involved in chromosome organization involved in meiotic cell cycle" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31306\" xsd:anyURI" ]
hjd
2019-06-25T18:31:06Z
true
true
3
GO:0106214
106,214
regulation of vesicle fusion with Golgi apparatus
biological_process
Any process that modulates the frequency, rate or extent of vesicle fusion with Golgi apparatus.
[ "GOC:se", "PMID:26195667" ]
null
[]
[]
[]
[]
[]
[ "GO:0031338", "GO:1903358" ]
[ "regulates GO:0048280" ]
[ "regulates" ]
[ "GO:0048280" ]
[ "GO:0031338", "GO:0048280", "GO:1903358" ]
[ "GO:0065007", "regulates GO:0048280" ]
[]
[]
[]
[]
[]
hjd
2019-06-27T15:12:22Z
false
true
7
GO:0106215
106,215
negative regulation of vesicle fusion with Golgi apparatus
biological_process
Any process that stops, prevents or reduces the frequency, rate or extent of vesicle fustion with Golgi apparatus.
[ "GOC:se", "PMID:26195667" ]
null
[]
[]
[]
[]
[]
[ "GO:0031339", "GO:0106214" ]
[ "negatively_regulates GO:0048280" ]
[ "negatively_regulates" ]
[ "GO:0048280" ]
[ "GO:0031339", "GO:0048280", "GO:0106214" ]
[ "GO:0065007", "negatively_regulates GO:0048280" ]
[]
[]
[]
[]
[]
hjd
2019-06-27T15:17:17Z
false
true
8
GO:0106216
106,216
positive regulation of vesicle fusion with Golgi apparatus
biological_process
Any process that activates or increases the frequency, rate or extent of vesicle fusion with Golgi apparatus.
[ "GOC:se", "PMID:26195667" ]
null
[]
[]
[]
[]
[]
[ "GO:0031340", "GO:0106214" ]
[ "positively_regulates GO:0048280" ]
[ "positively_regulates" ]
[ "GO:0048280" ]
[ "GO:0031340", "GO:0048280", "GO:0106214" ]
[ "GO:0065007", "positively_regulates GO:0048280" ]
[]
[]
[]
[]
[]
hjd
2019-06-27T15:20:59Z
false
true
4
GO:0106217
106,217
tRNA C3-cytosine methylation
biological_process
The process whereby a cytosine in a tRNA is methylated at position 3 of the cytosine.
[ "PMID:28655767" ]
null
[]
[]
[]
[]
[]
[ "GO:0030488" ]
[]
[]
[]
[ "GO:0030488" ]
[]
[]
[]
[]
[]
[]
hjd
2019-07-19T19:52:40Z
false
true
4
GO:0106218
106,218
galactosaminogalactan biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of the exopolysaccharide galactosaminogalactan. GAG is a heteropolysaccharide composed of alpha-1,4 linked galactose, N-acetyl galactosamine (GalNAc) and galactosamine (GalN).
[ "PMID:173713", "PMID:22102815", "PMID:24257745", "PMID:26492565", "PMID:26932183", "PMID:27048799", "PMID:30667338" ]
null
[ "GAG biosynthetic process", "galactosaminogalactan anabolism", "galactosaminogalactan biosynthesis", "galactosaminogalactan formation", "galactosaminogalactan synthesis" ]
[ "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]
[]
[]
[]
[ "GO:0051278" ]
[]
[]
[]
[ "GO:0051278" ]
[]
[]
[]
[]
[]
[]
hjd
2019-08-05T14:46:56Z
false
true
7
GO:0106219
106,219
zinc ion sensor activity
molecular_function
Binding to and responding, e.g. by conformational change, to changes in the cellular level of zinc.
[ "GOC:vw", "PMID:31239353" ]
null
[]
[]
[]
[]
[]
[ "GO:0140784" ]
[ "has_part GO:0008270" ]
[ "has_part" ]
[ "GO:0008270" ]
[ "GO:0008270", "GO:0140784" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/25267\" xsd:anyURI" ]
hjd
2019-08-15T16:45:43Z
false
true
2
GO:0106220
106,220
pyocyanine biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of pyrocyanin, an iminium betaine that is 5-methylphenazin-5-ium which is substituted at position 1 by an oxidanidyl group.
[ "PMID:28715477" ]
null
[ "pyocyanin biosynthetic process" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0009058" ]
[]
[]
[]
[ "GO:0009058" ]
[]
[]
[]
[]
[]
[]
hjd
2019-08-19T17:15:48Z
false
true
9
GO:0106222
106,222
lncRNA binding
molecular_function
Binding to a long noncoding RNA (lncRNA).
[ "PMID:25578728" ]
null
[ "long noncoding RNA binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0003723" ]
[]
[]
[]
[ "GO:0003723" ]
[]
[]
[]
[]
[]
[]
hjd
2019-08-27T14:52:58Z
false
true
7
GO:0106223
106,223
germacrene A hydroxylase activity
molecular_function
Catalysis of the reaction:(+)-(R)-germacrene A + 3 O2 + 3 reduced [NADPH--hemoprotein reductase] = germacra-1(10),4,11(13)-trien-12-oate + 4 H+ + 4 H2O + 3 oxidized [NADPH--hemoprotein reductase].
[ "PMID:11299372", "PMID:20351109", "RHEA:30303" ]
null
[ "germacrene A alcohol dehydrogenase activity" ]
[ "RELATED" ]
[ "GO:0102260" ]
[]
[ "EC:1.14.14.95", "MetaCyc:RXN-19749", "RHEA:30303" ]
[ "GO:0016712" ]
[]
[]
[]
[ "GO:0016712" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.14.95", "skos:exactMatch RHEA:30303", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21412\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-09-06T16:36:25Z
false
true
4
GO:0106225
106,225
obsolete peptidyl-lysine 2-hydroxyisobutyrylation
biological_process
OBSOLETE. The 2-hydroxyisobutyrylation of a lysine residue in a protein.
[ "GOC:sp", "PMID:29775581" ]
This term was obsoleted because it represents a molecular function.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28482\" xsd:anyURI" ]
hjd
2019-10-17T18:51:15Z
true
true
6
GO:0106226
106,226
peptide 2-hydroxyisobutyryltransferase activity
molecular_function
Catalysis of the reaction: 2-hydroxyisobutyryl-CoA + lysine in peptide = CoA + N-2-hydroxyisobutyryl-lysine-peptide.
[ "GOC:sp", "PMID:29775581" ]
null
[]
[]
[]
[]
[ "RHEA:24180" ]
[ "GO:0016410" ]
[]
[]
[]
[ "GO:0016410" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:24180", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-10-17T18:55:24Z
false
true
1
GO:0106227
106,227
peptidyl-lysine glutarylation
biological_process
The glutarylation of a lysine residue in a protein.
[ "GOC:sp", "PMID:31542297" ]
null
[]
[]
[]
[ "gocheck_obsoletion_candidate" ]
[]
[ "GO:0043543" ]
[]
[]
[]
[ "GO:0043543" ]
[]
[]
[]
[]
[]
[]
hjd
2019-10-17T18:57:19Z
false
true
4
GO:0106228
106,228
peptide glutaryltransferase activity
molecular_function
Catalysis of the reaction: glutaryl-CoA + L-lysyl-[protein] = CoA + H+ + N6-glutaryl-L-lysyl-[protein].
[ "GOC:sp", "PMID:31542297" ]
null
[]
[]
[]
[]
[ "Reactome:R-HSA-9858590 \"DLST transfers glutaryl to CoA\"", "RHEA:18009" ]
[ "GO:0016410" ]
[]
[]
[]
[ "GO:0016410" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:18009", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-10-17T18:58:56Z
false
true
7
GO:0106230
106,230
protein depropionylation
biological_process
The removal of a propionyl group from a residue in a peptide or protein.
[ "GOC:sp", "PMID:30026585" ]
null
[]
[]
[]
[ "gocheck_obsoletion_candidate" ]
[]
[ "GO:0035601" ]
[]
[]
[]
[ "GO:0035601" ]
[]
[]
[]
[]
[]
[]
hjd
2019-10-17T19:10:50Z
false
true
7
GO:0106231
106,231
NAD-dependent protein-lysine depropionylase activity
molecular_function
Catalysis of the reaction:H2O + N(6)-propanoyl-L-lysyl-[protein] + NAD+ = 3''-O-propanoyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide.
[ "GOC:sp", "PMID:30026585", "RHEA:23500" ]
This reaction is the removal of a propionyl group from a propionylated lysine residue of a protein or peptide.
[]
[]
[]
[]
[ "RHEA:23500" ]
[ "GO:0141218" ]
[]
[]
[]
[ "GO:0141218" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:23500", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28920\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-10-18T14:14:47Z
false
true
5
GO:0106235
106,235
ceramide-1-phosphate phosphatase activity
molecular_function
Catalysis of the reaction: ceramide-1-phosphate + H2O = ceramide+ phosphate.
[ "GOC:lb", "PMID:10359651" ]
null
[]
[]
[]
[]
[ "RHEA:33743", "RHEA:50888" ]
[ "GO:0042577" ]
[]
[]
[]
[ "GO:0042577" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:50888", "skos:narrowMatch RHEA:33743", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-11-21T20:40:39Z
false
true
6
GO:0106236
106,236
rhamnolipid biosynthesis
biological_process
The chemical reactions and pathways resulting in the formation/production of a glycolipid surfactant that acts as a bacterial biofilm dispersal.
[ "GOC:vw", "PMID:28715477" ]
null
[ "rhamnolipid production" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0009247" ]
[]
[]
[]
[ "GO:0009247" ]
[]
[]
[]
[]
[]
[]
hjd
2019-12-09T18:37:49Z
false
true
5
GO:0106237
106,237
arachidonate 12(R)-lipoxygenase activity
molecular_function
Catalysis of the reaction: arachidonate + O2 = (5Z,8Z,10E,12R,14Z)-12-hydroperoxyicosa-5,8,10,14-tetraenoate.
[ "GOC:gap", "PMID:10100631", "PMID:11256953", "RHEA:41336" ]
null
[]
[]
[]
[]
[ "RHEA:41336" ]
[ "GO:0016702" ]
[]
[]
[]
[ "GO:0016702" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:41336", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-12-18T21:03:02Z
false
true
8
GO:0106238
106,238
peregrinol diphosphate synthase activity
molecular_function
Catalysis of the reaction:peregrinol diphosphate = all-trans-geranylgeranyl diphosphate + H2O.
[ "GOC:emb", "PMID:24990389", "PMID:29315936", "RHEA:54652" ]
null
[]
[]
[]
[]
[ "EC:4.2.1.174", "RHEA:54652" ]
[ "GO:0016836" ]
[]
[]
[]
[ "GO:0016836" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:4.2.1.174", "skos:exactMatch RHEA:54652", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-12-19T15:28:28Z
false
true
3
GO:0106239
106,239
9,13-epoxylabda-14-ene synthase activity
molecular_function
Catalysis of the reaction:peregrinol diphosphate = (13R)-9,13-epoxylabd-14-ene + diphosphate.
[ "GOC:emb", "PMID:24990389", "RHEA:54512" ]
null
[]
[]
[]
[]
[ "EC:4.2.3.189", "RHEA:54512" ]
[ "GO:0016838" ]
[]
[]
[]
[ "GO:0016838" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:4.2.3.189", "skos:exactMatch RHEA:54512", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-12-19T16:00:49Z
false
true
9
GO:0106240
106,240
labd-13Z-ene-9,15,16-triol synthase activity
molecular_function
Catalysis of the reaction: O2 + peregrinol + reduced [NADPH--hemoprotein reductase] = H+ + H2O + labd-13Z-ene-9,15,16-triol + oxidized [NADPH--hemoprotein reductase].
[ "GOC:eab", "PMID:29315936", "RHEA:62192" ]
null
[]
[]
[]
[]
[ "RHEA:62192" ]
[ "GO:0016712" ]
[]
[]
[]
[ "GO:0016712" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:62192", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-12-19T17:43:00Z
false
true
8
GO:0106242
106,242
kolavenyl diphosphate synthase activity
molecular_function
Catalysis of the reaction: all-trans-geranylgeranyl diphosphate = (+)-kolavenyl diphosphate.
[ "GOC:eab", "PMID:29315936", "RHEA:54676" ]
null
[]
[]
[]
[]
[ "EC:5.5.1.29", "RHEA:54676" ]
[ "GO:0016872" ]
[]
[]
[]
[ "GO:0016872" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:5.5.1.29", "skos:exactMatch RHEA:54676", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-12-19T18:31:00Z
false
true
5
GO:0106243
106,243
syn-isopimara-7,15-diene synthase activity
molecular_function
Catalysis of the reaction: 9alpha-copalyl diphosphate = diphosphate + syn-isopimara-7,15-diene.
[ "GOC:emb", "PMID:29315936", "RHEA:62188" ]
null
[]
[]
[]
[]
[ "RHEA:62188" ]
[ "GO:0016838" ]
[]
[]
[]
[ "GO:0016838" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:62188", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-12-19T19:04:32Z
false
true
9
GO:0106244
106,244
eupatolide synthase activity
molecular_function
Catalysis of the reaction: 8beta-hydroxygermacra-1(10),4,11(13)-trien-12-oate + O2 + reduced [NADPH--hemoprotein reductase] = eupatolide + 2 H2O + oxidized [NADPH--hemoprotein reductase].
[ "GOC:eab", "PMID:29758164", "RHEA:57972" ]
null
[]
[]
[]
[]
[ "EC:1.14.14.169", "RHEA:57972" ]
[ "GO:0004497" ]
[]
[]
[]
[ "GO:0004497" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.14.169", "skos:exactMatch RHEA:57972", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2019-12-20T14:50:15Z
false
true
9
GO:0106245
106,245
L-serine-phosphatidylethanolamine phosphatidyltransferase activity
molecular_function
Catalysis of the reaction: L-1-phosphatidylethanolamine + L-serine = L-1-phosphatidylserine + ethanolamine.
[ "PMID:19014349", "PMID:31869331", "RHEA:27606" ]
null
[]
[]
[]
[]
[ "EC:2.7.8.29", "RHEA:27606" ]
[ "GO:0016780" ]
[]
[]
[]
[ "GO:0016780" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.7.8.29", "skos:exactMatch RHEA:27606", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2020-01-22T15:27:57Z
false
true
2
GO:0106246
106,246
obsolete regulation of poly(A)-specific ribonuclease activity
biological_process
OBSOLETE. Any process that modulates the rate, frequency or extent of the catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP.
[ "GOC:mah", "PMID:29932902" ]
This term was obsoleted because it represents a molecular function.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22455\" xsd:anyURI" ]
hjd
2020-02-03T18:56:03Z
true
true
3
GO:0106248
106,248
obsolete positive regulation of poly(A)-specific ribonuclease activity
biological_process
OBSOLETE. Any process that activates or increases the frequency, rate or extent of poly(A)-specific ribonuclease activity.
[ "GOC:mah", "PMID:29932902" ]
This term was obsoleted because it represents a molecular function.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28482\" xsd:anyURI" ]
hjd
2020-02-03T19:04:00Z
true
true
5
GO:0106250
106,250
DNA-binding transcription repressor activity, RNA polymerase III-specific
molecular_function
A DNA-binding transcription factor activity that represses or decreases the transcription of specific genes sets transcribed by RNA polymerase III.
[ "GOC:txnOH-2018", "PMID:15590667", "PMID:31833215" ]
For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.
[]
[]
[]
[]
[]
[ "GO:0001217" ]
[ "has_part GO:0001016", "occurs_in GO:0000785", "part_of GO:0016480" ]
[ "has_part", "occurs_in", "part_of" ]
[ "GO:0001016", "GO:0000785", "GO:0016480" ]
[ "GO:0000785", "GO:0001016", "GO:0001217", "GO:0016480" ]
[ "GO:0140110", "has_part GO:0001016", "part_of GO:0016480" ]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20253\" xsd:anyURI" ]
hjd
2020-02-19T19:34:18Z
false
true
6
GO:0106251
106,251
N4-acetylcytidine amidohydrolase activity
molecular_function
Catalysis of the reaction N4-acetylcytidine +H2O = cytidine + acetate.
[ "GOC:imk", "PMID:31964920", "RHEA:62932" ]
null
[]
[]
[]
[]
[ "RHEA:62932" ]
[ "GO:0016811" ]
[]
[]
[]
[ "GO:0016811" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:62932", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2020-02-19T20:31:17Z
false
true
4
GO:0106253
106,253
obsolete positive regulation of DNA strand resection involved in replication fork processing
biological_process
OBSOLETE. Any process that activates or increases the frequency, rate or extent of DNA strand resection involved in replication fork processing.
[ "GOC:vw", "PMID:31575705" ]
This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31254\" xsd:anyURI" ]
hjd
2020-02-24T15:31:30Z
true
true
1
GO:0106254
106,254
lipid sensor activity
molecular_function
Binding to and responding, e.g. by conformational change, to changes in the cellular level of a lipid.
[ "GOC:vw", "PMID:30075144" ]
null
[ "lipid sensing activity" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0140299" ]
[]
[]
[]
[ "GO:0140299" ]
[]
[]
[]
[]
[]
[]
hjd
2020-03-09T17:36:09Z
false
true
2
GO:0106255
106,255
hydroperoxy icosatetraenoate isomerase activity
molecular_function
A hydroperoxy icosatetraenoate = a hydroxy epoxy icosatrienoate.
[ "PMID:12881489", "RHEA:55560" ]
null
[]
[]
[]
[]
[ "EC:5.4.4.7", "Reactome:R-HSA-2161794 \"Arachidonate is converted to HXA3/B3 by ALOX12\"", "Reactome:R-HSA-8942208 \"ALOXE3 isomerises 12R-HpETE to HXA3\"", "RHEA:37931", "RHEA:37939", "RHEA:37951", "RHEA:37955", "RHEA:37959", "RHEA:41251", "RHEA:50216", "RHEA:53400", "RHEA:53404", "RHEA:555...
[ "GO:0050486" ]
[]
[]
[]
[ "GO:0050486" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:5.4.4.7", "skos:exactMatch RHEA:55560", "skos:narrowMatch RHEA:37931", "skos:narrowMatch RHEA:37939", "skos:narrowMatch RHEA:37951", "skos:narrowMatch RHEA:37955", "skos:narrowMatch RHEA:37959", "skos:narrowMatch RHEA:41251", "skos:narrowMatch RHEA:50216", "skos:narrowMatch RHE...
hjd
2020-03-20T14:00:30Z
false
true
2
GO:0106256
106,256
hydroperoxy icosatetraenoate dehydratase activity
molecular_function
A hydroperoxy icosatetraenoate = an oxoicosatetraenoate + H2O.
[ "PMID:12881489", "RHEA:55556" ]
null
[]
[]
[]
[]
[ "EC:4.2.1.152", "RHEA:37927", "RHEA:37935", "RHEA:37943", "RHEA:37947", "RHEA:48632", "RHEA:48636", "RHEA:50152", "RHEA:55556" ]
[ "GO:0016836" ]
[]
[]
[]
[ "GO:0016836" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:4.2.1.152", "skos:exactMatch RHEA:55556", "skos:narrowMatch RHEA:37927", "skos:narrowMatch RHEA:37935", "skos:narrowMatch RHEA:37943", "skos:narrowMatch RHEA:37947", "skos:narrowMatch RHEA:48632", "skos:narrowMatch RHEA:48636", "skos:narrowMatch RHEA:50152", "term_tracker_item ...
hjd
2020-03-20T14:40:16Z
false
true
5
GO:0106258
106,258
L-serine-phosphatidylcholine phosphatidyltransferase activity
molecular_function
Catalysis of the reaction: a 1,2-diacyl-sn-glycero-3-phosphocholine + L-serine = 1,2-diacyl-sn-glycero-3-phospho-L-serine + choline.
[ "PMID:19014349", "RHEA:45088" ]
null
[]
[]
[]
[]
[ "RHEA:45088" ]
[ "GO:0016780" ]
[]
[]
[]
[ "GO:0016780" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:45088", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2020-04-21T17:31:56Z
false
true
2
GO:0106259
106,259
symbiont-mediated cell-to-cell migration in host
biological_process
The directional movement of a symbiont from one host cell to another.
[ "GOC:vw", "PMID:18456802", "PMID:19262673", "PMID:19816653", "PMID:29567712" ]
null
[ "cell-to-cell migration in host", "symbiont-mediated dissemination across host cells" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0044001" ]
[]
[]
[]
[ "GO:0044001" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27786\" xsd:anyURI" ]
hjd
2020-05-01T14:09:35Z
false
true
9
GO:0106260
106,260
DNA-DNA tethering activity
molecular_function
Bridging together two regions of a DNA molecule.
[ "PMID:29358048", "PMID:30626735" ]
null
[ "double-stranded DNA bridging", "dsDNA bridging" ]
[ "EXACT", "EXACT" ]
[ "GO:0140564" ]
[]
[]
[ "GO:0003690", "GO:0060090" ]
[]
[]
[]
[ "GO:0003690", "GO:0060090" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19385\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20503\" xsd:anyURI" ]
hjd
2020-05-07T19:53:35Z
false
true
4
GO:0106261
106,261
tRNA uridine(34) acetyltransferase activity
molecular_function
Catalysis of the reaction: acetyl-CoA + H2O + S-adenosyl-L-methionine + uridine(34) in tRNA = 5'-deoxyadenosine + carboxymethyluridine(34) in tRNA + CoA + 2 H+ + L-methionine.
[ "PMID:25151136", "PMID:30733442", "RHEA:61020" ]
null
[]
[]
[]
[]
[ "EC:2.3.1.311", "RHEA:61020" ]
[ "GO:0016407", "GO:0140101" ]
[]
[]
[]
[ "GO:0016407", "GO:0140101" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.3.1.311", "skos:exactMatch RHEA:61020", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24847#event-8410069181\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30124\" xsd:anyURI", "term_tracker_item \"https://github.com/gen...
hjd
2020-05-08T15:21:51Z
false
true
7
GO:0106262
106,262
1-acylglycerophosphoethanolamine O-acyltransferase activity
molecular_function
Catalysis of the reaction: a 1-acyl-sn-glycero-3-phosphoethanolamine + an acyl-CoA = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine + CoA.
[ "PMID:18287005", "RHEA:32995" ]
null
[]
[]
[]
[]
[ "EC:2.3.1.n7", "RHEA:32995", "RHEA:36015", "RHEA:36019", "RHEA:36023", "RHEA:37495", "RHEA:37499", "RHEA:37503", "RHEA:37523", "RHEA:37575", "RHEA:37579", "RHEA:37727", "RHEA:37731", "RHEA:37767", "RHEA:37771", "RHEA:37775" ]
[ "GO:0008374" ]
[]
[]
[]
[ "GO:0008374" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.3.1.n7", "skos:exactMatch RHEA:32995", "skos:narrowMatch RHEA:36015", "skos:narrowMatch RHEA:36019", "skos:narrowMatch RHEA:36023", "skos:narrowMatch RHEA:37495", "skos:narrowMatch RHEA:37499", "skos:narrowMatch RHEA:37503", "skos:narrowMatch RHEA:37523", "skos:narrowMatch RH...
hjd
2020-05-18T15:09:57Z
false
true
3
GO:0106263
106,263
1-acylglycerophosphoserine O-acyltransferase activity
molecular_function
Catalysis of the reaction:a 1-acyl-sn-glycero-3-phospho-L-serine + an acyl-CoA = a 1,2-diacyl-sn-glycero-3-phospho-L-serine + CoA.
[ "PMID:18287005", "RHEA:33191" ]
null
[]
[]
[]
[]
[ "EC:2.3.1.n6", "RHEA:33191", "RHEA:37399", "RHEA:37403", "RHEA:37415", "RHEA:37531", "RHEA:37539", "RHEA:37567", "RHEA:37571", "RHEA:37735", "RHEA:37739" ]
[ "GO:0008374" ]
[]
[]
[]
[ "GO:0008374" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.3.1.n6", "skos:exactMatch RHEA:33191", "skos:narrowMatch RHEA:37399", "skos:narrowMatch RHEA:37403", "skos:narrowMatch RHEA:37415", "skos:narrowMatch RHEA:37531", "skos:narrowMatch RHEA:37539", "skos:narrowMatch RHEA:37567", "skos:narrowMatch RHEA:37571", "skos:narrowMatch RH...
hjd
2020-05-18T15:12:42Z
false
true
4
GO:0106264
106,264
protein serine kinase activity (using GTP as donor)
molecular_function
Catalysis of the reactions: GTP + L-seryl-[protein] = GDP + H+ + O-phospho-L-seryl-[protein].
[ "GOC:sp", "PMID:32322062", "RHEA:64020" ]
null
[]
[]
[]
[]
[ "RHEA:64020" ]
[ "GO:0004672" ]
[]
[]
[]
[ "GO:0004672" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:64020" ]
hjd
2020-05-28T18:51:18Z
false
true
2
GO:0106265
106,265
THPH synthase activity
molecular_function
Catalysis of the reaction: 3 H+ + hexanoyl-CoA + 3 malonyl-CoA = 2,4,6-trihydroxyphenylhexan-1-one + 3 CO2 + 4 CoA.
[ "PMID:9446571", "RHEA:64352" ]
null
[ "polyketide syntase" ]
[ "BROAD" ]
[]
[]
[ "RHEA:64352" ]
[ "GO:0016740" ]
[]
[]
[]
[ "GO:0016740" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:64352", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2020-06-02T18:05:33Z
false
true
4
GO:0106267
106,267
3,5 dichloro-THPH synthase activity
molecular_function
Catalysis of the reaction: (3-chloro-2,4,6-trihydroxyphenyl)hexan-1-one + chloride + FADH2 + O2 = (3,5-dichloro-2,4,6-trihydroxyphenyl)hexan-1-one + FAD + 2 H2O.
[ "PMID:20231486", "RHEA:64360" ]
null
[]
[]
[]
[]
[ "RHEA:64360" ]
[ "GO:0016712" ]
[]
[]
[]
[ "GO:0016712" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:64360", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2020-06-02T18:16:23Z
false
true
4
GO:0106268
106,268
3,5-dichloro-THPH methyl transferase activity
molecular_function
Catalysis of the reaction: (3,5-dichloro-2,4,6-trihydroxyphenyl)hexan-1-one + S-adenosyl-L-methionine = 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one + H+ + S-adenosyl-L-homocysteine.
[ "PMID:20231486", "RHEA:48396" ]
null
[ "DIF-1 syntase" ]
[ "RELATED" ]
[]
[]
[ "RHEA:48396" ]
[ "GO:0008757" ]
[]
[]
[]
[ "GO:0008757" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:48396", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
hjd
2020-06-02T18:25:03Z
false
true
3
GO:0106271
106,271
D-arabinose 1-dehydrogenase (NADP+) activity
molecular_function
Catalysis of the reaction: D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH.
[ "RHEA:21892" ]
null
[]
[]
[]
[]
[ "RHEA:21892" ]
[ "GO:0045290" ]
[]
[]
[]
[ "GO:0045290" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:21892", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28070\" xsd:anyURI" ]
hjd
2020-06-23T18:47:25Z
false
true
9
GO:0106272
106,272
protein localization to ERGIC
biological_process
A process in which a protein is transported to, or maintained in, a location within the endoplasmic reticulum-Golgi intermediate compartment (ERGIC).
[ "PMID:32272059" ]
null
[]
[]
[]
[]
[]
[ "GO:0034067" ]
[]
[]
[]
[ "GO:0034067" ]
[]
[]
[]
[]
[]
[]
hjd
2020-07-01T17:04:35Z
false
true
6
GO:0106273
106,273
cytosol to ERGIC protein transport
biological_process
The directed movement of proteins from the cystosol to the endoplasmic reticulum-Golgi intermediate compartment (ERGIC).
[ "PMID:32272059" ]
null
[]
[]
[]
[]
[]
[ "GO:0015031" ]
[]
[]
[]
[ "GO:0015031" ]
[]
[]
[]
[]
[]
[]
hjd
2020-07-01T17:28:07Z
false
true
5