LiteFold/GO · Datasets at Hugging Face

GO:1990014

1,990,014

orthogonal array

cellular_component

Square array of closely spaced intramembrane particles, 4-6 nm in size, that form supramolecular aggregates found in the plasma membrane of astrocytes, skeletal muscle and epithelial cells. They have been shown to contain aquaporins (water channels).

[ "NIF_Subcellular:sao1747012216", "PMID:22718347" ]

null

[ "OAP", "orthogonal array of particles", "square array" ]

[ "RELATED", "EXACT", "RELATED" ]

[]

[ "NIF_Subcellular:sao1747012216" ]

[ "GO:0110165" ]

[ "part_of GO:0005886" ]

[ "part_of" ]

[ "GO:0005886" ]

[ "GO:0005886", "GO:0110165" ]

[]

pr

2012-12-13T20:14:15Z

false

true

7

GO:1990015

1,990,015

ensheathing process

cellular_component

A cell projection (often from glial cells such as Schwann cells) that surrounds an unmyelinated axon or cell soma.

[ "NIF_Subcellular:sao1376748732" ]

null

[ "ensheathing process of Schwann cell" ]

[ "NARROW" ]

[]

[ "NIF_Subcellular:sao1376748732" ]

[ "GO:0110165" ]

[]

[ "GO:0110165" ]

[]

pr

2012-12-19T09:42:15Z

false

true

3

GO:1990016

1,990,016

neck portion of tanycyte

cellular_component

Elongated portion of a tanycyte that sticks into the periventricular layer of neuropil where it appears to contact a blood vessel; characterized by numerous cytoplasmic extensions. A tanycyte is a specialized elongated ventricular ependymal cell that has processes that extend to the outer, or pial, surface of the CNS.

[ "ISBN:0195065719", "NIF_Subcellular:sao901230115" ]

null

[ "neck portion" ]

[ "BROAD" ]

[]

[ "NIF_Subcellular:sao901230115" ]

[ "GO:0110165" ]

[]

[ "GO:0110165" ]

[]

pr

2012-12-19T15:17:17Z

false

true

7

GO:1990017

1,990,017

somatic portion of tanycyte

cellular_component

Portion of a tanycyte that lies within the ependyma and contains the nucleus. A tanycyte is a specialized elongated ventricular ependymal cell that has processes that extend to the outer, or pial, surface of the CNS.

[ "ISBN:0195065719", "NIF_Subcellular:sao401910342" ]

null

[ "somatic portion" ]

[ "BROAD" ]

[]

[ "NIF_Subcellular:sao401910342" ]

[ "GO:0044297" ]

[]

[ "GO:0044297" ]

[]

pr

2012-12-19T15:19:25Z

false

true

1

GO:1990018

1,990,018

tail portion of tanycyte

cellular_component

Elongated process of a tanycyte, devoid of cytoplasmic extensions, that courses through the hypothalamic nuclei to form small endfoot processes that terminate either on blood vessels or at the pial surface of the brain. A tanycyte is a specialized elongated ventricular ependymal cell.

[ "ISBN:0195065719", "NIF_Subcellular:sao1749953771" ]

null

[ "tail portion" ]

[ "BROAD" ]

[]

[ "NIF_Subcellular:sao1749953771" ]

[ "GO:0110165" ]

[]

[ "GO:0110165" ]

[]

pr

2012-12-19T15:21:20Z

false

true

2

GO:1990019

1,990,019

protein storage vacuole organization

biological_process

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a protein storage vacuole, a storage vacuole that contains a lytic vacuole.

[ "GOC:tb", "PMID:21670741" ]

null

[]

[ "GO:0007033" ]

[]

[ "GO:0007033" ]

[]

tb

2012-12-20T21:00:09Z

false

true

5

GO:1990020

1,990,020

recurrent axon collateral

cellular_component

Axon collateral that ramifies in the area of the soma of the cell of origin.

[ "NIF_Subcellular:sao1642494436" ]

null

[ "recurrent collateral" ]

[ "BROAD" ]

[]

[ "NIF_Subcellular:sao1642494436" ]

[ "GO:0044303" ]

[]

[ "GO:0044303" ]

[]

pr

2013-01-10T16:04:31Z

false

true

6

GO:1990021

1,990,021

Schaffer axon collateral

cellular_component

Part of axon of a CA3 pyramidal neuron that projects to hippocampal area CA1.

[ "NIF_Subcellular:nlx_subcell_20090511" ]

null

[ "Schaffer collateral" ]

[ "BROAD" ]

[]

[ "NIF_Subcellular:nlx_subcell_20090511" ]

[ "GO:0044303" ]

[]

[ "GO:0044303" ]

[]

pr

2013-01-10T16:06:17Z

false

true

6

GO:1990022

1,990,022

obsolete RNA polymerase III complex import into nucleus

biological_process

OBSOLETE. The directed movement of an RNA polymerase III complex from the cytoplasm to the nucleus.

[ "GOC:mcc", "PMID:23267056" ]

The reason for obsoletion is that all proteins are imported into the nucleus via the same mechanism, so the import of individual proteins should be captured with extensions or by GO-CAM models.

[ "DNA-directed RNA polymerase III complex import into nucleus", "DNA-directed RNA polymerase III complex localization to nucleus", "RNA polymerase III complex import into nucleus", "RNA polymerase III complex localisation to nucleus", "RNA polymerase III complex localization to nucleus" ]

[ "EXACT", "EXACT", "EXACT", "EXACT", "RELATED" ]

[]

[ "GO:0006606" ]

[]

pr

2013-01-15T12:46:26Z

true

8

GO:1990023

1,990,023

mitotic spindle midzone

cellular_component

The area in the center of the anaphase spindle consisting of microtubules, microtubule bundling factors and kinesin motors where the spindle microtubules from opposite poles overlap in an antiparallel manner.

[ "GOC:mtg_cell_cycle", "GOC:vw" ]

null

[]

[ "GO:0051233" ]

[ "part_of GO:0072686" ]

[ "part_of" ]

[ "GO:0072686" ]

[ "GO:0051233", "GO:0072686" ]

[]

vw

2013-02-05T15:41:48Z

false

true

2

GO:1990025

1,990,025

F bouton

cellular_component

Synaptic bouton found in the ventral horn of the spinal cord. F boutons range in diameter from 0.5 to 7 um and contain flattened or pleomorphic synaptic vesicles.

[ "NIF_Subcellular:nlx_subcell_100206" ]

null

[]

[ "NIF_Subcellular:nlx_subcell_100206" ]

[ "GO:0043195" ]

[]

[ "GO:0043195" ]

[]

pr

2013-02-06T10:29:42Z

false

true

8

GO:1990026

1,990,026

hippocampal mossy fiber expansion

cellular_component

Synaptic expansion of hippocampal mossy fiber axon that makes contact with the thorny excrescences of hippocampal CA3 pyramidal cell dendrites.

[ "NIF_Subcellular:nlx_subcell_1005002" ]

null

[ "dentate gyrus granule cell axonal bouton", "dentate gyrus mossy fiber expansion", "mossy fiber expansion" ]

[ "RELATED", "RELATED", "BROAD" ]

[]

[ "NIF_Subcellular:nlx_subcell_1005002" ]

[ "GO:0043195" ]

[ "part_of GO:0097457" ]

[ "part_of" ]

[ "GO:0097457" ]

[ "GO:0043195", "GO:0097457" ]

[]

pr

2013-02-06T10:31:59Z

false

true

8

GO:1990028

1,990,028

intermediate voltage-gated calcium channel activity

molecular_function

Enables the transmembrane transfer of a calcium ion by an intermediate voltage-gated channel. An intermediate voltage-gated channel is a channel whose open state is dependent on intermediate voltage across the membrane in which it is embedded.

[ "GOC:BHF", "GOC:rl", "PMID:16382099", "Wikipedia:Calcium_channel" ]

null

[ "R-type calcium channel" ]

[ "RELATED" ]

[]

[ "GO:0005245" ]

[]

[ "GO:0005245" ]

[]

pr

2013-02-06T20:55:41Z

false

true

1

GO:1990029

1,990,029

vasomotion

biological_process

The rhythmical contraction and relaxation of arterioles, observed as slow and fast waves, with frequencies of 1-2 and 10-20 cpm.

[ "GOC:sl", "PMID:14993429", "PMID:15678091", "PMID:1932763" ]

null

[]

[ "GO:0003013" ]

[]

[ "GO:0003013" ]

[]

tb

2013-02-06T22:30:21Z

false

true

7

GO:1990030

1,990,030

pericellular basket

cellular_component

Ramification of basket cell axon surrounding cell bodies, forming the characteristic pericellular baskets from which the cell class derives its name.

[ "NIF_Subcellular:sao413722576" ]

null

[ "peri cellular basket", "peri-cellular basket" ]

[ "EXACT", "EXACT" ]

[]

[ "NIF_Subcellular:sao413722576" ]

[ "GO:0110165" ]

[ "part_of GO:0030424" ]

[ "part_of" ]

[ "GO:0030424" ]

[ "GO:0030424", "GO:0110165" ]

[]

pr

2013-02-07T12:53:54Z

false

true

4

GO:1990031

1,990,031

pinceau fiber

cellular_component

Dense plexus formed by the descending collaterals of cerebellar basket cells that wrap around a Purkinje cell axonal initial segment.

[ "NIF_Subcellular:sao109906988" ]

null

[]

[ "NIF_Subcellular:sao109906988" ]

[ "GO:0110165" ]

[ "part_of GO:0030424" ]

[ "part_of" ]

[ "GO:0030424" ]

[ "GO:0030424", "GO:0110165" ]

[]

pr

2013-02-07T12:56:50Z

false

true

4

GO:1990032

1,990,032

parallel fiber

cellular_component

A parallel fiber results from the bifurcation of a cerebellar granule cell axon in the molecular layer into two diametrically opposed branches, that are oriented parallel to the long axis of the folium.

[ "ISBN:0195159551", "NIF_Subcellular:nlx_330" ]

null

[]

[ "NIF_Subcellular:nlx_330" ]

[ "GO:0030424" ]

[]

[ "GO:0030424" ]

[]

pr

2013-02-07T12:58:43Z

false

true

1

GO:1990033

1,990,033

dendritic branch point

cellular_component

The part of a dendritic tree where it branches, giving rise to a dendritic branch.

[ "GOC:aruk", "GOC:bc", "NIF_Subcellular:sao1348591767" ]

null

[ "branch point of dendrite" ]

[ "EXACT" ]

[]

[ "NIF_Subcellular:sao1348591767" ]

[ "GO:0061845" ]

[ "part_of GO:0097447" ]

[ "part_of" ]

[ "GO:0097447" ]

[ "GO:0061845", "GO:0097447" ]

[]

pr

2013-02-07T13:01:01Z

false

true

8

GO:1990034

1,990,034

calcium ion export across plasma membrane

biological_process

The directed movement of calcium ions from inside of a cell, across the plasma membrane and into the extracellular region.

[ "GOC:mah", "PMID:2145281" ]

null

[ "calcium ion efflux from cell", "calcium ion export from cell" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0070588", "GO:0140115" ]

[]

[ "GO:0070588", "GO:0140115" ]

[]

mah

2013-02-07T13:01:29Z

false

true

7

GO:1990036

1,990,036

calcium ion import into sarcoplasmic reticulum

biological_process

The directed movement of calcium ions into a sarcoplasmic reticulum.

[ "GOC:BHF", "PMID:17286271" ]

null

[]

[ "GO:0046907", "GO:0070296" ]

[ "occurs_in GO:0005737" ]

[ "occurs_in" ]

[ "GO:0005737" ]

[ "GO:0005737", "GO:0046907", "GO:0070296" ]

[]

tb

2013-02-07T23:22:27Z

false

true

7

GO:1990037

1,990,037

Lewy body core

cellular_component

The center portion of a Lewy body. In Parkinson's disease, it contains a matted meshwork of filaments.

[ "NIF_Subcellular:sao6587439252" ]

null

[]

[ "NIF_Subcellular:sao6587439252" ]

[ "GO:0110165" ]

[ "part_of GO:0097413" ]

[ "part_of" ]

[ "GO:0097413" ]

[ "GO:0097413", "GO:0110165" ]

[]

pr

2013-02-08T12:56:59Z

false

true

8

GO:1990038

1,990,038

Lewy body corona

cellular_component

The periphery of a Lewy body. In Parkinson's disease, it contains spherical accumulations of filaments arranged in a loose, radiating array.

[ "NIF_Subcellular:sao5764355747" ]

null

[ "halo" ]

[ "BROAD" ]

[]

[ "NIF_Subcellular:sao5764355747" ]

[ "GO:0110165" ]

[ "part_of GO:0097413" ]

[ "part_of" ]

[ "GO:0097413" ]

[ "GO:0097413", "GO:0110165" ]

[]

pr

2013-02-08T13:03:27Z

false

true

5

GO:1990039

1,990,039

hypolemmal cisterna

cellular_component

Specialized part of the smooth endoplasmic reticulum that closely underlies the plasma membrane, usually within 60 nm or closer.

[ "ISBN:0195065719", "NIF_Subcellular:sao1634374950" ]

null

[ "hypolemmal cisternae" ]

[ "EXACT" ]

[]

[ "NIF_Subcellular:sao1634374950" ]

[ "GO:0120082" ]

[]

[ "GO:0120082" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/13848\" xsd:anyURI" ]

pr

2013-02-11T15:04:56Z

false

true

9

GO:1990040

1,990,040

sub-surface cisterna

cellular_component

Specialization of the hypolemmal cisterna consisting of either single profiles or closely apposed stacks of endoplasmic reticulum in which the lumen is obliterated, lying 10-20 nm beneath the plasma membrane.

[ "ISBN:0195065719", "NIF_Subcellular:sao128470897" ]

null

[ "sub-surface cisternae" ]

[ "EXACT" ]

[]

[ "NIF_Subcellular:sao128470897" ]

[ "GO:1990039" ]

[]

[ "GO:1990039" ]

[]

pr

2013-02-11T15:10:47Z

false

true

4

GO:1990042

1,990,042

obsolete glycerol dehydrogenase [NAD(P)+] activity

molecular_function

OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which glycerol is converted into glycerone and NAD+ or NADP is reduced.

[ "PMID:22979944" ]

This term was obsoleted because it is an unnecessary grouping term.

[ "glycerol dehydrogenase activity, NAD or NADP as acceptor" ]

[ "EXACT" ]

[]

[ "GO:0008888", "GO:0047956" ]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30105\" xsd:anyURI" ]

rb

2013-02-14T00:34:45Z

true

7

GO:1990043

1,990,043

obsolete 5' deoxyribonuclease (pyrimidine dimer) activity

molecular_function

OBSOLETE. Catalysis of the endonucleolytic cleavage immediately 5' to pyrimidine dimers to products with 5'-phosphate.

[ "GOC:al", "PMID:9708997" ]

The reason for obsoletion is that this term is not different from the parent term deoxyribonuclease (pyrimidine dimer) activity.

[]

[ "GO:0033892" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28395\" xsd:anyURI" ]

pr

2013-02-15T12:16:51Z

true

8

GO:1990044

1,990,044

protein localization to lipid droplet

biological_process

A process in which a protein is transported to, or maintained in, a location on or within a lipid droplet.

[ "GOC:sart", "PMID:22505614" ]

null

[ "protein localisation to adiposome", "protein localisation to lipid body", "protein localisation to lipid droplet", "protein localisation to lipid particle", "protein localization to adiposome", "protein localization to lipid body", "protein localization to lipid particle" ]

[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0033365" ]

[]

[ "GO:0033365" ]

[]

sart

2013-02-15T12:40:57Z

false

true

8

GO:1990046

1,990,046

stress-induced mitochondrial fusion

biological_process

Merging of two or more mitochondria within a cell to form a single compartment, as a result of a disturbance in cellular homeostasis.

[ "GOC:lb", "PMID:19360003" ]

null

[ "mitochondrial fusion in response to stress", "SIMH", "stress-induced mitochondrial hyperfusion" ]

[ "RELATED", "NARROW", "NARROW" ]

[]

[ "GO:0008053", "GO:0033554" ]

[]

[ "GO:0008053", "GO:0033554" ]

[]

pr

2013-02-15T16:01:55Z

false

true

3

GO:1990047

1,990,047

spindle matrix

cellular_component

A proteinaceous, nuclear-derived structure that embeds the microtubule spindle apparatus from pole to pole in a microtubule-independent manner during mitosis.

[ "GOC:ans", "PMID:19273613", "PMID:22855526" ]

null

[]

[ "GO:0110165" ]

[ "part_of GO:0005856" ]

[ "part_of" ]

[ "GO:0005856" ]

[ "GO:0005856", "GO:0110165" ]

[]

pr

2013-02-18T08:51:47Z

false

true

1

GO:1990048

1,990,048

anterograde neuronal dense core vesicle transport

biological_process

The directed movement of substances in neuronal dense core vesicles along axonal microtubules towards the presynapse.

[ "GOC:kmv", "PMID:23358451" ]

null

[ "anterograde dense core granule trafficking", "anterograde dense core granule transport" ]

[ "EXACT", "EXACT" ]

[]

[ "goslim_synapse" ]

[]

[ "GO:0008089", "GO:0047496", "GO:0099519" ]

[]

[ "GO:0008089", "GO:0047496", "GO:0099519" ]

[]

null

false

true

2

GO:1990049

1,990,049

retrograde neuronal dense core vesicle transport

biological_process

The directed movement of neuronal dense core vesicles along axonal microtubules towards the cell body.

[ "GOC:kmv", "PMID:23358451", "PMID:24762653" ]

null

[ "retrograde dense core granule trafficking", "retrograde dense core granule transport" ]

[ "EXACT", "EXACT" ]

[]

[ "goslim_synapse" ]

[]

[ "GO:0008090", "GO:0047496", "GO:0099519" ]

[]

[ "GO:0008090", "GO:0047496", "GO:0099519" ]

[]

pr

2013-02-19T13:31:44Z

false

true

3

GO:1990050

1,990,050

phosphatidic acid transfer activity

molecular_function

Removes a phosphatidic acid from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. Phosphatidic acid refers to a glycophospholipids with, in general, a saturated fatty acid bonded to carbon-...

[ "PMID:23042293" ]

null

[ "intermembrane PA transfer activity", "intermembrane phosphatidic acid transfer activity", "phosphatidic acid carrier activity", "phosphatidic acid transporter activity" ]

[ "EXACT", "NARROW", "EXACT", "BROAD" ]

[]

[ "GO:0120014" ]

[]

[ "GO:0120014" ]

[]

rb

2013-02-21T00:45:28Z

false

true

1

GO:1990051

1,990,051

activation of protein kinase C activity

biological_process

Any process that initiates the activity of the inactive enzyme protein kinase C.

[ "PMID:3156004" ]

null

[ "PKC activation", "protein kinase C activation" ]

[ "EXACT", "EXACT" ]

[]

[ "gocheck_obsoletion_candidate" ]

[]

[ "GO:0032147" ]

[]

[ "GO:0032147" ]

[]

sl

2013-02-21T19:57:54Z

false

true

6

GO:1990052

1,990,052

ER to chloroplast lipid transport

biological_process

The directed movement of a lipid from the endoplasmic reticulum (ER) to the chloroplast.

[ "PMID:18689504" ]

null

[ "endoplasmic reticulum to chloroplast lipid transport", "ER to chloroplast lipid trafficking" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0032365", "GO:1901965" ]

[]

[ "GO:0032365", "GO:1901965" ]

[]

tb

2013-02-22T00:05:23Z

false

true

2

GO:1990054

1,990,054

response to temozolomide

biological_process

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temozolomide stimulus.

[ "GOC:hp" ]

Note that this term is in the subset of terms that should not be used for direct manual annotation of gene products. It was created to be used for cross-referencing by other ontologies. Direct annotations to this term may be amended during annotation QC.

[]

[ "gocheck_do_not_annotate" ]

[]

[ "GO:1901698", "GO:1901700" ]

[]

[ "GO:1901698", "GO:1901700" ]

[]

pr

2013-02-22T10:09:44Z

false

true

9

GO:1990055

1,990,055

phenylacetaldehyde synthase activity

molecular_function

Catalyzes the reaction: L-phenylalanine + O2 + H2O + H+ = 2-phenylacetaldehyde + H2O2 + NH4+ + CO2.

[ "PMID:16766535", "PMID:23204519", "RHEA:55532" ]

null

[ "aromatic aldehyde synthase" ]

[ "BROAD" ]

[]

[ "EC:4.1.1.109", "MetaCyc:RXN-8990", "RHEA:55532" ]

[ "GO:0016831" ]

[]

[ "GO:0016831" ]

[]

[ "skos:exactMatch EC:4.1.1.109", "skos:exactMatch RHEA:55532", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28523\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-onto...

tb

2013-02-25T20:22:35Z

false

true

4

GO:1990056

1,990,056

obsolete protein kinase activity required for targeting substrate to proteasomal ubiquitin-dependent protein catabolic process

molecular_function

OBSOLETE. Catalysis of the phosphorylation of an amino acid residue in a substrate protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP, thereby targeting the substrate to the proteasomal ubiquitin mediated protein catabolic process.

[ "PMID:21098119", "PMID:21993622", "PMID:23264631" ]

This term was obsoleted at the TermGenie Gatekeeper stage.

[ "protein kinase activity required for targeting substrate to proteasomal ubiquitin-dependent protein catabolic process" ]

[ "EXACT" ]

[]

rb

2013-02-26T21:28:08Z

true

6

GO:1990057

1,990,057

obsolete cell cycle arrest in response to DNA damage stimulus

biological_process

OBSOLETE. The cell cycle regulatory process in which the cell cycle is halted during one of the normal phases (G1, S, G2, M) as a result of DNA damage from environmental insults or errors during metabolism.

[ "GOC:rph", "PMID:10630641" ]

This term was obsoleted at the TermGenie Gatekeeper stage.

[ "cell cycle arrest in response to DNA damage stimulus" ]

[ "EXACT" ]

[]

rph

2013-03-06T13:48:44Z

true

9

GO:1990058

1,990,058

fruit replum development

biological_process

The process whose specific outcome is the progression of the fruit replum over time, from its formation to the mature structure. The fruit replum is a portion of fruit placenta tissue that divides a fruit into two or more chambers and develops from a replum.

[ "PMID:23133401", "PO:0025267" ]

null

[]

[ "GO:0009791", "GO:0048856" ]

[ "part_of GO:0010154" ]

[ "part_of" ]

[ "GO:0010154" ]

[ "GO:0009791", "GO:0010154", "GO:0048856" ]

[]

dhl

2013-03-12T21:15:15Z

false

true

5

GO:1990059

1,990,059

fruit valve development

biological_process

The process whose specific outcome is the progression of the fruit valve over time, from its formation to the mature structure. The fruit valve is a part of a fruit that splits apart when the fruit dehisces.

[ "PMID:23133401", "PO:0000033" ]

null

[]

[ "GO:0009791", "GO:0048856" ]

[ "part_of GO:0010154" ]

[ "part_of" ]

[ "GO:0010154" ]

[ "GO:0009791", "GO:0010154", "GO:0048856" ]

[]

dhl

2013-03-12T21:21:15Z

false

true

4

GO:1990060

1,990,060

maltose transport complex

cellular_component

Protein complex facilitating ATP-dependent maltose transport through inner cell membrane (periplasm to cytoplasm) in Gram-negative bacteria. In E. coli the system is composed of a periplasmic maltose-binding protein (MBP), two integral membrane proteins, MalF and MalG, and two copies of the cytoplasmic ATP-binding cass...

[ "PMID:18033289" ]

null

[ "maltose ABC transporter complex", "maltose ATP-binding cassette transporter complex" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0043190" ]

[]

[ "GO:0043190" ]

[]

jl

2013-03-13T13:52:48Z

false

true

3

GO:1990061

1,990,061

bacterial degradosome

cellular_component

The degradosome is a protein complex playing a key role in mRNA degradation and RNA processing. It includes a RNA helicase, a 3'-5' phosphate-dependent PNPase and a RNase E bound-enolase.

[ "GOC:bhm", "PMID:21805185" ]

null

[]

[ "GO:0000177" ]

[ "part_of GO:0005829" ]

[ "part_of" ]

[ "GO:0005829" ]

[ "GO:0000177", "GO:0005829" ]

[]

bhm

2013-03-20T13:51:49Z

false

true

4

GO:1990063

1,990,063

Bam protein complex

cellular_component

Protein complex which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. In E. coli it is composed of BamABCDE, of the outer membrane protein BamA, and four lipoproteins BamB, BamC, BamD and BamE. BamA interacts directly with BamB and the BamCDE subcomplex.

[ "GOC:bhm", "PMID:20378773" ]

null

[ "OMP complex" ]

[ "EXACT" ]

[]

[ "GO:0098796", "GO:0140392" ]

[ "part_of GO:0031241" ]

[ "part_of" ]

[ "GO:0031241" ]

[ "GO:0031241", "GO:0098796", "GO:0140392" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31720\" xsd:anyURI" ]

bhm

2013-03-20T15:42:57Z

false

true

1

GO:1990064

1,990,064

ground tissue pattern formation

biological_process

The regionalization process that gives rise to the patterning of the ground tissue.

[ "PMID:23444357" ]

null

[ "ground tissue patterning" ]

[ "EXACT" ]

[]

[ "GO:0003002" ]

[]

[ "GO:0003002" ]

[]

tb

2013-03-21T23:24:44Z

false

true

3

GO:1990065

1,990,065

Dxr protein complex

cellular_component

A protein complex that is involved in the MEP pathway of IPP biosynthesis. It catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).

[ "GOC:bhm", "PMID:15339150" ]

null

[ "1-deoxy-D-xylulose 5-phosphate reductoisomerase complex" ]

[ "EXACT" ]

[]

[ "GO:0032991" ]

[]

[ "GO:0032991" ]

[]

bhm

2013-03-27T16:58:54Z

false

true

3

GO:1990066

1,990,066

energy quenching

biological_process

The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted by nonphotochemical quenching or chlorophyll fluorescence.

[ "PMID:10938857" ]

null

[]

[ "GO:0009416" ]

[]

[ "GO:0009416" ]

[]

tb

2013-03-27T21:02:00Z

false

true

5

GO:1990067

1,990,067

intrachromosomal DNA recombination

biological_process

The process of DNA recombination occurring within a single chromosome.

[ "PMID:7748165" ]

null

[ "intrastrand DNA recombination" ]

[ "EXACT" ]

[]

[ "GO:0006310" ]

[]

[ "GO:0006310" ]

[]

tb

2013-03-27T21:11:35Z

false

true

6

GO:1990068

1,990,068

seed dehydration

biological_process

The seed development process whose outcome is the drying of a maturing seed.

[ "PMID:20138563" ]

null

[]

[ "GO:0048609" ]

[ "part_of GO:0010431" ]

[ "part_of" ]

[ "GO:0010431" ]

[ "GO:0010431", "GO:0048609" ]

[]

tb

2013-03-27T21:16:03Z

false

true

3

GO:1990069

1,990,069

stomatal opening

biological_process

The process of opening of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange.

[ "PMID:21749899" ]

null

[]

[ "GO:0010118" ]

[]

[ "GO:0010118" ]

[]

tb

2013-03-27T21:18:48Z

false

true

9

GO:1990070

1,990,070

TRAPPI protein complex

cellular_component

A complex that tethers COPII vesicles at ER-Golgi intermediate compartment. Its role in this part of the vesicular transport may start at the ER exit sites. Binds to a component of the COPII coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Trs20, Trs23, Trs31, Trs33 which are regarded as th...

[ "GOC:bhm", "PMID:20375281", "PMID:22669257" ]

null

[ "TRAPP core complex" ]

[ "EXACT" ]

[]

[ "GO:0030008" ]

[ "part_of GO:0005793" ]

[ "part_of" ]

[ "GO:0005793" ]

[ "GO:0005793", "GO:0030008" ]

[]

bhm

2013-03-28T14:04:40Z

false

true

1

GO:1990071

1,990,071

TRAPPII protein complex

cellular_component

A complex that mediates intra-Golgi traffic, Golgi exit, endosome-to-Golgi traffic, and the trafficking of autophagy proteins from Golgi to the phagophore assembly site. Binds to a component of the COPI coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Tca17, Trs20, Trs23, Trs31, Trs33, Trs6...

[ "GOC:bhm", "PMID:20375281", "PMID:22669257" ]

null

[]

[ "GO:0030008" ]

[ "part_of GO:0005768", "part_of GO:0005794" ]

[ "part_of", "part_of" ]

[ "GO:0005768", "GO:0005794" ]

[ "GO:0005768", "GO:0005794", "GO:0030008" ]

[]

bhm

2013-03-28T14:24:08Z

false

true

2

GO:1990072

1,990,072

TRAPPIII protein complex

cellular_component

A complex that functions in anterograde transport at the Golgi and also regulates autophagy. In yeast it includes at least the following subunits: Bet3 (as homodimer), Bet5, Trs20, Trs23, Trs31, Trs33, Trs85. TRAPPIII may include further, as yet undescribed, proteins.

[ "GOC:bhm", "PMID:20375281", "PMID:22669257" ]

null

[]

[ "GO:0030008" ]

[ "part_of GO:0005794" ]

[ "part_of" ]

[ "GO:0005794" ]

[ "GO:0005794", "GO:0030008" ]

[]

bhm

2013-03-28T14:28:59Z

false

true

1

GO:1990073

1,990,073

perforation plate

cellular_component

A cell wall part that is the part of a wall of a vessel member and bears one or more openings (perforations).

[ "GOC:PO_curators", "ISBN:0471245194" ]

Part of a vessel member (PO:0002003). May be simple, with one perforation, or multiperforate, with more than one perforation. Perforation plates are usually on the end walls of a cell, but may also be on the side walls.

[]

[ "GO:0110165" ]

[ "part_of GO:0005618" ]

[ "part_of" ]

[ "GO:0005618" ]

[ "GO:0005618", "GO:0110165" ]

[]

tb

2013-03-29T00:53:28Z

false

true

3

GO:1990074

1,990,074

polyuridylation-dependent mRNA catabolic process

biological_process

The chemical reactions and pathways resulting in the breakdown of a messenger RNA (mRNA) molecule, initiated by the enzymatic addition of a sequence of uridylyl residues (polyuridylation) at the 3' end of the target mRNA.

[ "GOC:vw", "PMID:23503588" ]

null

[]

[ "GO:0006402", "GO:0043632", "GO:0061157" ]

[]

[ "GO:0006402", "GO:0043632", "GO:0061157" ]

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20568\" xsd:anyURI" ]

tb

2013-04-16T22:51:46Z

false

true

4

GO:1990075

1,990,075

periciliary membrane compartment

cellular_component

A plasma membrane region adjacent to the base of eukaryotic cilia and flagella that is enriched in endocytosis-associated proteins and vesicles and that appears to regulate ciliary membrane homeostasis.

[ "GOC:cilia", "GOC:dr", "GOC:krc", "PMID:22342749" ]

null

[ "PCMC" ]

[ "EXACT" ]

[]

[ "GO:0098590" ]

[]

[ "GO:0098590" ]

[]

pr

2013-04-24T10:14:50Z

false

true

4

GO:1990076

1,990,076

obsolete cell wall polysaccharide catabolic process involved in abscission

biological_process

OBSOLETE. Any cell wall polysaccharide catabolic process that is involved in abscission.

[ "GOC:TermGenie", "PMID:23479623" ]

This term was obsoleted because it is a pre-composed term that should be captured as a GO-CAM model.

[]

[ "GO:0009838", "GO:0044347" ]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31254\" xsd:anyURI" ]

dhl

2013-04-25T16:29:43Z

true

8

GO:1990077

1,990,077

primosome complex

cellular_component

Any of a family of protein complexes that form at the origin of replication or stalled replication forks and function in replication primer synthesis in all organisms. Early complexes initiate double-stranded DNA unwinding. The core unit consists of a replicative helicase and a primase. The helicase further unwinds the...

[ "GOC:bhm", "GOC:mah", "PMID:21856207" ]

null

[ "primosome" ]

[ "EXACT" ]

[]

[ "GO:0032993" ]

[ "part_of GO:0030894" ]

[ "part_of" ]

[ "GO:0030894" ]

[ "GO:0030894", "GO:0032993" ]

[]

bhm

2013-04-26T11:55:28Z

false

true

9

GO:1990078

1,990,078

replication inhibiting complex

cellular_component

A protein complex that inhibits multiple events of replication initiation during one replication cycle.

[ "GOC:bhm", "PMID:21708944" ]

null

[]

[ "GO:0032991" ]

[ "part_of GO:0030894" ]

[ "part_of" ]

[ "GO:0030894" ]

[ "GO:0030894", "GO:0032991" ]

[]

bhm

2013-04-26T13:07:03Z

false

true

9

GO:1990079

1,990,079

cartilage homeostasis

biological_process

A tissue homeostatic process involved in the maintenance of an internal equilibrium within cartilage, including control of cellular proliferation and death and control of metabolic function.

[ "GOC:hjd", "PMID:21652695" ]

null

[ "negative regulation of cartilage homeostasis", "positive regulation of cartilage homeostasis", "regulation of cartilage homeostasis" ]

[ "RELATED", "RELATED", "RELATED" ]

[ "GO:1902094", "GO:1902095", "GO:1902096" ]

[]

[ "GO:0001894" ]

[]

[ "GO:0001894" ]

[]

hjd

2013-04-29T20:10:15Z

false

true

9

GO:1990080

1,990,080

2-phenylethylamine receptor activity

molecular_function

Combining with the biogenic amine 2-phenylethylamine to initiate a change in cell activity.

[ "PMID:16878137" ]

null

[ "beta-phenylethylamine receptor activity" ]

[ "EXACT" ]

[]

[ "GO:0008227" ]

[]

[ "GO:0008227" ]

[]

sp

2013-04-30T10:53:19Z

false

true

9

GO:1990081

1,990,081

trimethylamine receptor activity

molecular_function

Combining with the biogenic amine trimethylamine to initiate a change in cell activity.

[ "PMID:16878137" ]

null

[]

[ "GO:0001594" ]

[]

[ "GO:0001594" ]

[]

sp

2013-04-30T10:57:07Z

false

true

1

GO:1990082

1,990,082

DnaA-L2 complex

cellular_component

A protein complex that inhibits unwinding of DNA at the origin of replication and assembly of the pre-primosome. In E. coli, this complex is composed of DnaA and of the ribosomal protein L2.

[ "GOC:bhm", "PMID:21288885" ]

null

[]

[ "GO:1990078" ]

[]

[ "GO:1990078" ]

[]

bhm

2013-04-30T11:46:41Z

false

true

3

GO:1990083

1,990,083

DnaA-Hda complex

cellular_component

A protein complex that inactivates the function of DnaA by inhibiting the phosphorylation of DnaA-ADP to DnaA-ATP and thereby preventing multiple events of replication initiation. In E. coli, this complex is composed of DnaA and Hda.

[ "GOC:bhm", "PMID:21708944" ]

null

[]

[ "GO:1990078" ]

[]

[ "GO:1990078" ]

[]

bhm

2013-04-30T11:49:04Z

false

true

9

GO:1990084

1,990,084

DnaA-Dps complex

cellular_component

A protein complex that negatively regulates strand-opening at the origin of replication, thereby interfering with replication initiation. This complex is thought to be involved in the regulation of replication under oxidative stress conditions. In E. coli, this complex is composed of DnaA and Dps.

[ "GOC:bhm", "PMID:18284581" ]

null

[]

[ "GO:1990078" ]

[]

[ "GO:1990078" ]

[]

bhm

2013-04-30T11:50:17Z

false

true

9

GO:1990085

1,990,085

Hda-beta clamp complex

cellular_component

A protein complex involved in inactivating the function of DnaA and thereby preventing multiple events of replication initiation. In E. coli, this complex is composed of the beta clamp (DnaN) and Hda.

[ "GOC:bhm", "PMID:15150238" ]

null

[ "Hda-DnaN complex", "Hda-dpo3b complex" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:1990078" ]

[]

[ "GO:1990078" ]

[]

bhm

2013-04-30T11:53:18Z

false

true

8

GO:1990086

1,990,086

lens fiber cell apoptotic process

biological_process

Any apoptotic process in a lens fiber cell. Lens fiber cells are elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye.

[ "CL:0011004", "GOC:hjd", "PMID:11095619" ]

null

[]

[ "GO:1904019" ]

[]

[ "GO:1904019" ]

[]

hjd

2013-05-01T19:09:28Z

false

true

9

GO:1990088

1,990,088

[methyl-Co(III) methanol-specific corrinoid protein]:coenzyme M methyltransferase activity

molecular_function

Catalysis of the reaction: a [methyl-Co(III) methanol-specific corrinoid protein] + coenzyme M = methyl-coenzyme M + a [Co(I) methanol-specific corrinoid protein] + H+.

[ "PMID:10077852", "RHEA:45208" ]

This function is the second step in the pathway of methanogenesis from methanol.

[ "methanol-specific methylcobalamin: coenzyme M methyltransferase activity", "methanol-specific methylcobalamin:coenzyme M methyltransferase activity", "methanol-specific methylcobalamin:CoM methyltransferase activity", "methylcobamide:coenzyme M methyltransferase activity", "methylcobamide:CoM methyltransfe...

[ "EXACT", "EXACT", "EXACT", "BROAD", "BROAD" ]

[ "GO:0043851" ]

[]

[ "EC:2.1.1.246", "MetaCyc:RXN-8096", "RHEA:45208" ]

[ "GO:0008168" ]

[]

[ "GO:0008168" ]

[]

[ "skos:exactMatch EC:2.1.1.246", "skos:exactMatch RHEA:45208", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/18530\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]

hjd

2013-05-06T15:07:20Z

false

true

1

GO:1990089

1,990,089

response to nerve growth factor

biological_process

A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nerve growth factor stimulus.

[ "PMID:22399805" ]

null

[ "response to nerve growth factor stimulus" ]

[ "EXACT" ]

[]

[ "GO:0070848" ]

[]

[ "GO:0070848" ]

[]

sl

2013-05-06T17:08:47Z

false

true

1

GO:1990090

1,990,090

cellular response to nerve growth factor stimulus

biological_process

A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nerve growth factor stimulus.

[ "PMID:22399805", "Wikipedia:Nerve_growth_factor" ]

null

[ "cellular response to NGF" ]

[ "EXACT" ]

[]

[ "GO:0071363", "GO:1990089" ]

[]

[ "GO:0071363", "GO:1990089" ]

[]

sl

2013-05-06T17:13:36Z

false

true

9

GO:1990091

1,990,091

sodium-dependent self proteolysis

biological_process

The sodium-dependent hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their own peptide bonds.

[ "PMID:20460380" ]

null

[]

[ "GO:0097264" ]

[]

[ "GO:0097264" ]

[]

sl

2013-05-06T17:30:23Z

false

true

2

GO:1990092

1,990,092

calcium-dependent self proteolysis

biological_process

The calcium-dependent hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their own peptide bonds.

[ "PMID:20460380" ]

null

[]

[ "GO:0097264" ]

[]

[ "GO:0097264" ]

[]

sl

2013-05-06T17:33:34Z

false

true

8

GO:1990093

1,990,093

obsolete negative regulation of N-methyl-D-aspartate receptor clustering

biological_process

OBSOLETE. The negative regulation of the receptor clustering process in which N-methyl-D-aspartate (NMDA) receptors are localized to distinct domains in the cell membrane.

[ "PMID:18442977" ]

This term was obsoleted at the TermGenie Gatekeeper stage.

[ "negative regulation of N-methyl-D-aspartate receptor clustering", "negative regulation of NMDA receptor clustering" ]

[ "EXACT", "EXACT" ]

[]

sl

2013-05-06T17:39:44Z

true

1

GO:1990094

1,990,094

obsolete positive regulation of N-methyl-D-aspartate receptor clustering

biological_process

OBSOLETE. The positive regulation of the receptor clustering process in which N-methyl-D-aspartate (NMDA) receptors are localized to distinct domains in the cell membrane.

[ "PMID:18442977" ]

This term was obsoleted at the TermGenie Gatekeeper stage.

[ "positive regulation of N-methyl-D-aspartate receptor clustering", "positive regulation of NMDA receptor clustering" ]

[ "EXACT", "EXACT" ]

[]

sl

2013-05-06T17:44:00Z

true

7

GO:1990095

1,990,095

obsolete positive regulation of transcription from RNA polymerase II promoter in response to reactive oxygen species

biological_process

OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals.

[ "GOC:kmv", "PMID:16166371" ]

This term was obsoleted because it represents a GO-CAM model.

[]

[ "GO:0034599", "GO:0045944" ]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12739\" xsd:anyURI" ]

pr

2013-05-07T12:10:32Z

true

6

GO:1990096

1,990,096

obsolete positive regulation of transcription from RNA polymerase II promoter in response to superoxide

biological_process

OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion.

[ "GOC:kmv", "PMID:12869585", "PMID:16166371" ]

This term was obsoleted because it represents a GO-CAM model.

[]

[ "GO:0034599", "GO:0045944" ]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12739\" xsd:anyURI" ]

pr

2013-05-07T12:25:34Z

true

3

GO:1990097

1,990,097

SeqA-DNA complex

cellular_component

A protein-DNA complex that contains an oligomer of SeqA bound to GATC sites in methylated or newly-synthesized, hemi-methylated double-stranded DNA, with preference for the latter. Binding of SeqA to hemimethylated DNA sequesters oriC, prevents re-methylation of DNA by Dam and in turn stops premature re-initiation of r...

[ "GOC:bhm", "PMID:12379844", "PMID:15933720", "PMID:23149570" ]

null

[ "SeqA-dsDNA complex", "SeqA-hemimethylated DNA complex", "SeqA-hemimethylation dsDNA complex" ]

[ "NARROW", "NARROW", "NARROW" ]

[]

[ "GO:0032993" ]

[]

[ "GO:0032993" ]

[]

bhm

2013-05-13T11:18:11Z

false

true

7

GO:1990098

1,990,098

core primosome complex

cellular_component

A protein-DNA complex containing at least one DNA helicase and one primase. Can also contain associated proteins. The helicase component continues to unwind the double-stranded DNA (dsDNA) and the primase component synthesizes a RNA primer during initiation or restart of replication.

[ "GOC:bhm", "PMID:21856207" ]

The core primosome refers to a helicase-primase complex, and should not be confused with the more general GO term 'primosome complex ; GO:1990077'.

[ "core primosome" ]

[ "EXACT" ]

[]

[ "GO:1990077" ]

[]

[ "GO:1990077" ]

[]

bhm

2013-05-14T10:30:02Z

false

true

9

GO:1990099

1,990,099

pre-primosome complex

cellular_component

Any of the protein-DNA complexes that contain a DNA helicase and associated protein(s) at the origin of replication, and build up to assembling the core primosome. The associated protein(s) chaperone the helicase to the DNA, and assembly of the pre-primosome is essential for the initiation or restart of replication. Pr...

[ "GOC:bhm", "PMID:18179598", "PMID:20129058", "PMID:8663105" ]

null

[ "pre-priming complex", "pre-primosome", "pre-replication complex", "preprimosome", "preprimosome complex", "prereplication complex" ]

[ "EXACT", "EXACT", "RELATED", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:1990077" ]

[]

[ "GO:1990077" ]

[]

bhm

2013-05-14T10:53:42Z

false

true

5

GO:1990100

1,990,100

DnaB-DnaC complex

cellular_component

A protein complex containing homohexameric DNA helicase DnaB, and the DNA helicase loader DnaC. The helicase loader DnaC delivers DnaB to the chromosomal origin (oriC).

[ "GOC:bhm", "PMID:20129058" ]

DnaB and DnaC may be present in different ratios in different forms of the DnaB-DnaC complex, including a DnaB6-DnaC3 complex active at the oriC, and a DnaB6-DnaC6 complex.

[ "DnaB6-DnaC3 complex", "DnaB6-DnaC6 complex", "helicase-loading complex" ]

[ "NARROW", "NARROW", "BROAD" ]

[]

[ "GO:0032991" ]

[ "has_part GO:1990161", "part_of GO:1990077" ]

[ "has_part", "part_of" ]

[ "GO:1990161", "GO:1990077" ]

[ "GO:0032991", "GO:1990077", "GO:1990161" ]

[]

bhm

2013-05-14T12:02:22Z

false

true

1

GO:1990101

1,990,101

DnaA-oriC complex

cellular_component

A protein-DNA complex containing the initiator protein DnaA bound to high-affinity recognition sites in the unique origin of replication, oriC. DnaA-oriC binding is the first step in assembly of a bacterial pre-replicative complex (pre-RC) and is responsible for the timely initiation of replication once per cell cycle.

[ "GOC:bhm", "PMID:19833870" ]

null

[ "DnaA-DNA complex" ]

[ "BROAD" ]

[]

[ "GO:1990077" ]

[]

[ "GO:1990077" ]

[]

bhm

2013-05-14T12:07:04Z

false

true

6

GO:1990102

1,990,102

DnaA-DiaA complex

cellular_component

A protein-DNA complex containing a tetramer of DiaA attached to multiple DnaA molecule bound to oriC DNA. Regulates timely initiation of chromosomal replication during the cell cycle by stimulating assembly of DnaA-oriC complexes, conformational changes in ATP-DnaA initiation complexes, and unwinding of oriC duplex DNA...

[ "GOC:bhm", "PMID:15326179", "PMID:17699754" ]

null

[ "DnaA-DiaA-DNA complex" ]

[ "EXACT" ]

[]

[ "GO:1990077" ]

[ "has_part GO:1990101", "has_part GO:1990125" ]

[ "has_part", "has_part" ]

[ "GO:1990101", "GO:1990125" ]

[ "GO:1990077", "GO:1990101", "GO:1990125" ]

[]

bhm

2013-05-14T12:33:59Z

false

true

3

GO:1990103

1,990,103

DnaA-HU complex

cellular_component

A protein-DNA complex containing DNA-bound DnaA attached to HU. HU is a dimer encoded by two closely related genes. Essential for the initiation of replication in bacteria; stimulates the DnaA-dependent unwinding of oriC.

[ "GOC:bhm", "PMID:18179598" ]

null

[ "DnaA-HU-DNA complex" ]

[ "EXACT" ]

[]

[ "GO:1990077" ]

[]

[ "GO:1990077" ]

[]

bhm

2013-05-14T12:36:39Z

false

true

4

GO:1990104

1,990,104

DNA bending complex

cellular_component

A protein-DNA complex that contains DNA in combination with a protein which binds to and bends DNA. Often plays a role in DNA compaction.

[ "GOC:bhm", "PMID:17097674" ]

null

[ "histone-like DNA binding complex" ]

[ "NARROW" ]

[]

[ "GO:0032991" ]

[]

[ "GO:0032991" ]

[]

bhm

2013-05-20T09:29:06Z

false

true

6

GO:1990105

1,990,105

obsolete regulation of voltage-gated potassium channel activity

biological_process

OBSOLETE. Any process that modulates the frequency, rate or extent of voltage-gated potassium channel activity.

[ "PMID:19219384" ]

This term was obsoleted at the TermGenie Gatekeeper stage.

[ "regulation of voltage-gated potassium channel activity" ]

[ "EXACT" ]

[]

sl

2013-05-21T15:12:06Z

true

6

GO:1990107

1,990,107

thiazole synthase activity

molecular_function

Catalysis of the reaction: 1-deoxy-D-xylulose 5-phosphate + 2-iminoacetate + [sulfur-carrier protein ThiS]-C-terminal Gly-NH-CH2-C(O)SH = 2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + [sulfur-carrier protein ThiS]-C-terminal Gly-Gly + 2 H+ + 2 H2O.

[ "PMID:22031445", "RHEA:26297" ]

Part of the pathway for thiamine biosynthesis.

[ "1-deoxy-D-xylulose 5-phosphate:thiol sulfurtransferase activity" ]

[ "EXACT" ]

[]

[ "EC:2.8.1.10", "RHEA:26297" ]

[ "GO:0016783" ]

[ "part_of GO:0009228" ]

[ "part_of" ]

[ "GO:0009228" ]

[ "GO:0009228", "GO:0016783" ]

[]

[ "skos:exactMatch EC:2.8.1.10", "skos:exactMatch RHEA:26297", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28942\" xsd:anyURI" ]

pr

2013-05-28T12:36:04Z

false

true

6

GO:1990108

1,990,108

protein linear deubiquitination

biological_process

A protein deubiquitination process in which a linear polymer of ubiquitin, formed by the amino-terminal methionine (M1) of one ubiquitin molecule and by the carboxy-terminal glycine (G76) of the next, is removed from a protein.

[ "PMID:23708998" ]

null

[]

[ "GO:0016579" ]

[]

[ "GO:0016579" ]

[]

sp

2013-05-29T05:58:49Z

false

true

8

GO:1990110

1,990,110

callus formation

biological_process

The process by which a callus is formed at a wound site. A plant callus is a portion of plant tissue that consists of mass of undifferentiated plant cells. It consists primarily of parenchyma cells but possibly contains other cell types as the callus begins to differentiate.

[ "ISBN:0070187517" ]

null

[]

[ "GO:0032501" ]

[ "part_of GO:0042060" ]

[ "part_of" ]

[ "GO:0042060" ]

[ "GO:0032501", "GO:0042060" ]

[]

tb

2013-05-29T22:02:52Z

false

true

4

GO:1990111

1,990,111

spermatoproteasome complex

cellular_component

A proteasome specifically found in mammalian testis. Contains the proteasome activator PA200 in the regulatory particle, and beta1i, beta2i, beta5i and/or alpha4s in the core (20S) subunit. Beta1i, beta2i and beta5i are inducible catalytic subunits, closely related to beta1, beta2 and beta5. Alpha4s is a sperm-specific...

[ "GOC:sp", "PMID:23706739" ]

null

[]

[ "GO:0000502" ]

[]

[ "GO:0000502" ]

[]

sp

2013-05-31T11:56:52Z

false

true

6

GO:1990112

1,990,112

RQC complex

cellular_component

A multiprotein complex that forms a stable complex with large ribosomal subunits (60S in eukaryotes and 50S in prokaryotes) containing stalled polypeptides and triggers their degradation (ribosomal quality control). In budding yeast, this complex includes Cdc48p, Rkr1p, Tae2p, Rqc1p, Npl4p and Ufd1p proteins.

[ "GOC:rb", "PMID:23178123", "PMID:23232563" ]

null

[ "ribosome quality control complex", "ribosome-bound quality control complex" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0032991" ]

[]

[ "GO:0032991" ]

[]

rb

2013-05-31T21:42:43Z

false

true

6

GO:1990113

1,990,113

RNA polymerase I assembly

biological_process

The aggregation, arrangement and bonding together of a set of components to form the eukaryotic RNA polymerase I complex.

[ "GOC:rb", "PMID:23459708" ]

null

[ "DNA-directed RNA polymerase I complex assembly", "RNA Polymerase I complex assembly" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0065003" ]

[]

[ "GO:0065003" ]

[]

rb

2013-05-31T21:44:41Z

false

true

3

GO:1990114

1,990,114

RNA polymerase II core complex assembly

biological_process

The aggregation, arrangement and bonding together of a set of components to form the eukaryotic RNA polymerase II core complex.

[ "GOC:rb", "PMID:23459708" ]

null

[ "DNA-directed RNA polymerase II, core complex assembly", "RNA Polymerase II assembly" ]

[ "EXACT", "BROAD" ]

[]

[ "GO:0065003" ]

[]

[ "GO:0065003" ]

[]

rb

2013-05-31T21:46:42Z

false

true

3

GO:1990115

1,990,115

RNA polymerase III assembly

biological_process

The aggregation, arrangement and bonding together of a set of components to form the eukaryotic RNA polymerase III complex.

[ "GOC:rb", "PMID:23459708" ]

null

[ "DNA-directed RNA polymerase III complex assembly", "RNA Polymerase III complex assembly" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:0065003" ]

[]

[ "GO:0065003" ]

[]

rb

2013-05-31T21:49:19Z

false

true

7

GO:1990116

1,990,116

ribosome-associated ubiquitin-dependent protein catabolic process

biological_process

The chemical reactions and pathways resulting in the breakdown of a protein or peptide encoded by an aberrant message and associated with a stalled ribosome. Degradation is initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the ribosome-associated protein.

[ "GOC:dgf", "PMID:23358411" ]

null

[ "RAD", "ribosome-associated degradation", "ribosome-associated ubiquitin-dependent protein breakdown", "ribosome-associated ubiquitin-dependent protein catabolism", "ribosome-associated ubiquitin-dependent protein degradation" ]

[ "BROAD", "BROAD", "EXACT", "EXACT", "EXACT" ]

[]

[ "GO:0043161" ]

[]

[ "GO:0043161" ]

[]

pr

2013-06-05T11:46:01Z

false

true

5

GO:1990117

1,990,117

B cell receptor apoptotic signaling pathway

biological_process

An extrinsic apoptotic signaling pathway initiated by the cross-linking of an antigen receptor on a B cell.

[ "GOC:BHF", "GOC:mtg_apoptosis", "GOC:rl", "PMID:15214043" ]

null

[ "B cell receptor extrinsic apoptotic signaling pathway", "extrinsic apoptotic signaling pathway via B cell antigen receptor", "extrinsic apoptotic signaling pathway via BCR" ]

[ "EXACT", "RELATED", "RELATED" ]

[]

[ "GO:0050853", "GO:0097191" ]

[ "part_of GO:0001783" ]

[ "part_of" ]

[ "GO:0001783" ]

[ "GO:0001783", "GO:0050853", "GO:0097191" ]

[]

pr

2013-06-06T15:15:17Z

false

true

4

GO:1990119

1,990,119

RNA helicase inhibitor activity

molecular_function

Binds to and stops, prevents or reduces the activity of an RNA helicase.

[ "GOC:rb", "PMID:23721653" ]

null

[ "ATP-dependent RNA helicase inhibitor activity" ]

[ "EXACT" ]

[]

[ "GO:0004857", "GO:0042030" ]

[ "negatively_regulates GO:0003724" ]

[ "negatively_regulates" ]

[ "GO:0003724" ]

[ "GO:0003724", "GO:0004857", "GO:0042030" ]

[]

rb

2013-06-11T21:14:38Z

false

true

1

GO:1990120

1,990,120

obsolete messenger ribonucleoprotein complex assembly

biological_process

OBSOLETE. The aggregation, arrangement and bonding together of proteins and messenger RNA (mRNA) molecules to form a messenger ribonucleoprotein (mRNP) complex.

[ "GOC:rb", "PMID:23721653" ]

The reason for obsoletion is that the term is not clearly defined and usage has been inconsistent.

[]

[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27077\" xsd:anyURI" ]

rb

2013-06-11T21:18:20Z

true

3

GO:1990121

1,990,121

H-NS complex

cellular_component

A multimer of H-NS proteins that is involved in bacterial nucleoid condensation and negative regulation of global gene expression by directly binding to promoter regions. Recognizes both structural and sequence-specific motifs in double-stranded DNA and has binding preference for bent DNA.

[ "GOC:bhm", "PMID:12592399" ]

null

[ "DNA-binding protein H-NS complex", "histone-like protein H-NS complex" ]

[ "EXACT", "EXACT" ]

[]

[ "GO:1990104" ]

[ "part_of GO:0005829", "part_of GO:0043590" ]

[ "part_of", "part_of" ]

[ "GO:0005829", "GO:0043590" ]

[ "GO:0005829", "GO:0043590", "GO:1990104" ]

[]

bhm

2013-06-12T10:08:31Z

false

true

2

GO:1990124

1,990,124

obsolete messenger ribonucleoprotein complex

cellular_component

OBSOLETE. A ribonucleoprotein complex containing both protein and messenger RNA (mRNA) molecules.

[ "GOC:bf", "PMID:15574591", "PMID:21915786" ]

This term was obsoleted becasue it does not represent a specific complex

[ "messenger ribonucleoprotein particle", "mRNA-protein complex", "mRNP", "mRNP complex" ]

[ "RELATED", "EXACT", "EXACT", "EXACT" ]

[]

bf

2013-06-13T09:20:52Z

true

8

GO:1990125

1,990,125

DiaA complex

cellular_component

A homotetrameric protein complex consisting of a symmetrical pair of DiaA homodimers. Facilitates DnaA binding to the origin of replication during replication initiation.

[ "GOC:bhm", "PMID:17699754" ]

null

[ "DiaA homotetramer" ]

[ "EXACT" ]

[]

[ "GO:0032991" ]

[]

[ "GO:0032991" ]

[]

bhm

2013-06-13T14:03:54Z

false

true

6

GO:1990127

1,990,127

intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator

biological_process

The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of osmotic stress, and ends when the execution phase of apoptosis is trigge...

[ "GOC:krc", "GOC:mtg_apoptosis", "PMID:16571598" ]

null

[]

[ "GO:0008627", "GO:0072332" ]

[]

[ "GO:0008627", "GO:0072332" ]

[]

pr

2013-06-19T13:55:06Z

false

true

4