PMCID string | Sentences string | ner list |
|---|---|---|
PMC11656657 | For the stimulation assays with 1A7 anti-idiotypic antibody, non-transduced (NT) T-cells and CAR.GD2 T-cells were incubated with 0.5 ng/mL of 1A7 anti-idiotypic antibody for 72 h. The 1A7 antibody was used to mimic stimulation by the tumor-associated antigen disialoganglioside GD2. | [
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PMC10958426 | GO enrichment analysis of DEGs with high CNV-expression correlation (DEGCNV) and DEGs with low CNV-expression correlation (DEGreg). | [
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PMC11012012 | Later, Yigit et al. (2016) reported that upon transplantation of an aggressive murine B220+ CD5+ CLL cell clone, TCL1-192, into SCID mice, one injection of an anti-SLAMF6/CD352 monoclonal antibody abrogated tumor progression in the spleen, bone marrow, and blood, but not in the peritoneal cavity or omentum . | [
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PMC11674441 | Indeed, the IFN-γ ELISpot data for BC5 showed that when HLA class II-restricted neoantigen peptide-pulsed DCs and CD4-positive T cells and CD8-positive T cells obtained after Neo-P DCs vaccination were co-cultured, the degree of lymphocyte activation increased even further than the sum of activation levels when they were co-cultured separately. | [
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PMC10547921 | Continuous DNA damage is caused by cross-linking between DNA chains, which leads to cell cycle arrest in the G2/M phase and cell apoptosis, thus exhibiting a powerful cytotoxic effect. | [
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PMC10024132 | Briefly, tumor cells were first stained with PKH26 (Sigma) and 5(6)-carboxyfluorescein diacetate succinimidyl ester (CFSE; Invitrogen). | [
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PMC11740207 | Comparative molecular profiling of VSELSCs or VSLSLCs with existing datasets from early human embryonic stages and somatic cells is essential to elucidate their unique and shared characteristics. | [
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PMC11748618 | Each data point (pink) represents a meQTL in the chromosome 1 region in linkage disequilibrium (r = 1) with rsrs72999655-A-G. The vertical bars show whether the meQTL is associated with hypermethylation (red) or hypomethylation (blue). | [
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PMC11697703 | FACS purifications were performed by the Stanford Shared FACS Facility. | [
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PMC11737091 | L-N) Diagnostic ROC analysis with the AUC of DBF4 in ccRCC. ( | [
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PMC9429973 | The initial diagnosis of ETP-ALL was based on the results of bone marrow cytology and flow cytometry immunophenotype. | [
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PMC6034753 | Subsequently, after washing, cells were incubated with Alexa 488 (CEF and DF-1 cells)/ 568 (MSB-1 cells)-conjugated goat anti-rabbit antibodies. | [
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PMC11721587 | The cells were scraped off the plate and washed with cold PBS twice and resuspended with cold Farnham lysis buffer [5 mM Pipes (pH 8.0), 85 mM KCl, 0.5% NP-40, and 1× complete protease inhibitors cocktail]. | [
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PMC11389534 | UBL modifications participate in the modulation of immune responses by specifically targeting immune receptors, adaptors, enzymes and transcriptional factors. | [
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PMC6892818 | For detection of intracellular ROS levels, cells were treated with 1 μM H2DCFDA (Thermo Fisher Scientific) for 30 min, fluorescence measurements (relative fluorescence units, RFU) were taken spectrophotometrically and results expressed as fold increase in RFU, as described in detail previously. | [
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PMC9532503 | For example, it is well established that the absence of core fucose leads to increased ADCC activity . | [
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PMC6160470 | Although the tested compounds did affect Akt signalling pathway, this did not ultimately alter P-gp expression and is probably not the underlying mechanism of action. | [
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PMC7887261 | Sensitive DNA damage assays by flow cytometry were performed as previously described. | [
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PMC9429973 | We show that spleen function is partially preserved in many adults with SCD. | [
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PMC11082662 | Cancer has the highest mortality rate among gynecological cancers and poses a serious threat to women’s lives. | [
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PMC10809689 | Significant variation for the PMA group compared to the control group was reported (p = 0.04) (Fig. 9 (a.)). | [
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PMC11298021 | Expression of PI3K, AKT, mTOR, and S6KB1 genes in Jurkat cells. | [
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PMC11665555 | In addition, the Markus Riester high-risk cohort BCa dataset (n = 93) revealed that OXCT1 was significantly expressed in invasive disease (pT4) while HMGCS2 was downregulated at higher disease stages, showing a correlation with muscle invasive disease (Figure 1, A and B) (23). | [
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PMC11461874 | The precipitate was resuspended in SDS-PAGE sample buffer [10 mM Tris-HCl, 2 mM EDTA, 2% SDS, 6% glycerol, 50 mM DTT, 0.02% CBB R-250; pH 6.8] and incubated at 95 °C for 5 min, used as “nuclear fraction”. | [
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PMC9895440 | Then the drugs were added to the cells, mixed rapidly and incubated again. | [
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PMC9429973 | Network and Pathway Enrichment Analysis MMP9 (degree=9) and CCNA2 (degree=7) showed significant importance (Fig 2A). | [
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PMC11791264 | The consensus SETD7 recognition sequence, the lysines targeted for methylation by SETD7 in known substrates, and the methylated lysine are shown in red in each case. | [
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PMC9926039 | An in vitro trans well migration assay was performed by uncoated 8 μm pore size membranes (SPL Life Sciences, South Korea). | [
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PMC8922418 | One of the most significant challenges in the treatment of AIDS is eliminating the latent reservoir in HIV-1 infected cells. | [
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PMC6650823 | Highlighted by Simona Collina Riboswitches are regulatory, noncoding RNA aptamers that regulate gene expression by binding to specific small molecules. | [
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PMC10671321 | Some data suggest that ColQ/MuSK/LRP4 interaction impacts the activity of signalling pathways leading to specific mRNA regulation, the number and the size of AChR clusters, as well as membrane levels of MuSK . | [
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PMC11360263 | Evidence from in vitro and in vivo data indicated that HCMV might play a role in the onset or progression of breast cancer . | [
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PMC11705630 | We then assessed the expressions of GLDC and ISGF3 in xenografted tumor tissues and confirmed decreased GLDC and increased IRF9 and STAT2 expressions (Fig. 8D-E). | [
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PMC11216402 | The combined differential expression of these TF genes and the identification of their TF binding sites as the largest signals in predictive sequence modeling of the chromatin accessibility profiles strongly suggest that the variability in activation of this small set of TFs is responsible for driving the EMT program. | [
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PMC11394112 | We confirmed the genotype by PCR using the following primer sets (IL6, 5′ AGG GAG AGC CAG AAC ACA GA 3′ and 5′ TGC AGC TTA GGT CGT CAT TG 3′; CSF2, 5′ ACC TGC CTA CAG ACC CG 3′ and 5′ AGT GCT GCT TGT AGT GGC 3′; IL3, 5′ AAT CTC CTG CCA TGT CTG C 3′ and 5′ CCA GTC ACC GTC CTT GAT ATG 3′; KITLG, 5′ CAA GGA CTT TGT AGT GGC ATC TG 3′ and 5′ CAA CAG GGG GTA ACA TAA ATG G 3′). | [
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PMC11411131 | CGCs were prepared from 7-day-old mouse pups. | [
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PMC11731161 | A–D NCI-H929 and MM.1S cells were transfected with the tet-on-shRNA either with control sequence (NC) or sequences targeting USP7 (#1 and #2), cells were treated with 1ug/ml DOX for 48 h, USP7 (A and B) and XPO1 (A and C) protein levels were analyzed by immunoblotting and were quantitatively analyzed. | [
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PMC9926039 | The ΔΔCt value was calculated by obtaining the difference between the ΔCt values of the treated and untreated cells (ΔΔCt = ΔCt (treated cell)-ΔCt (untreated cell). | [
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PMC11075223 | For example, Cimicifugae Rhizoma has a good effect on treating vertigo with compatibility of Polygonatum sibiricum Red . | [
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PMC10604092 | Data were analyzed statistically using Student’s t-test or Welch’s t-test on the basis of the result of an F test (GraphPad Prism 9 version 9.5.1; GraphPad Software, San Diego, CA, USA). | [
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PMC8633974 | Statistical calculations set type I error cut-off α = 0.05 and were performed using GraphPad Prism v7.0a or 9 for Mac OS X (GraphPad Software, San Diego, California USA, www.graphpad.com). | [
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PMC5308810 | A representative graph of six independent experiments was performed. | [
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PMC11594641 | Cell invasion was studied using the QCM ECMatrix Cell Invasion Assay (Merck Millipore, Burlington, MA, USA) according to the manufacturer’s protocol. | [
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PMC9454178 | As expected, the results showed that THZ1 treatment led to a profound reduction in tumour volume and weight, corroborating the tumour inhibition effect in vitro (Fig. 4A). | [
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PMC11310713 | (G), and bone volume/total volume (BV/TV) (H) in GTB or pharmaceutical hormone-treated OVX rats compared to ovary-intact and OVX rats. | [
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PMC9910796 | However, the closest relatives of ASFV, the amoeba-infecting faustovirus , pacmanvirus and kaumoebavirus , together with the mollusk-infecting abalone asfa-like virus (AbALV) , encode homologs of polyproteins pp220 and pp62 as well as ASFV protease. | [
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PMC8633974 | A gRNA library was screened against a panel of HIV-1 molecular clones by co-transfection into HEK293FT cells. | [
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PMC9164404 | E Fluorescence distribution of Abplatin@Cy5.5 at 12 h in different focal planes of 3D tumor sphere, scale bar = 100 µm. | [
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PMC11783017 | Next, 5 mg of the previously synthesized Cis/Mn@Lipo-IL11 (quantified by cisplatin) and 5 mg of NHWD-870 were added to 250 mg of PGP (3 %/1.5 %). | [
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PMC10213199 | These results provide enlightenment to further improve our understanding of the specific active ingredients in traditional Chinese medicines. | [
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PMC11394227 | The expressions of PERK, BiP, and CHOP protein in CHO-PAb cells increased by 1.29 times, 1.56 times, and 1.32 times, respectively, while those in CHO-PAb-QS cells increased by 1.15 times, 1.06 times, and 1.43 times, respectively. | [
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PMC10507284 | Hence, we can roughly infer that the downregulation of TROAP could significantly attenuate the proliferation, migration, and invasion ability of STS cells. | [
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PMC11718109 | Quantification of vesicle diameter was performed using randomly sampled images from clustered vesicles in classical synapses and bouton-like structures for DA neurons, and large droplets in COS7 cells. | [
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PMC11568601 | After rinsing three times with PBS, secondary antibodies were added, and the mixture was incubated for 1 h. Finally, DAB staining solution (Beyotime Biotech., | [
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PMC9792775 | Growth curves generated with OD450 data with the CCK8 assay for A-204 cells treated with LFU and PTX. ( | [
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PMC11738017 | The dotted black line represents the starting cell viability without the addition of TCE. | [
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PMC10988555 | These results demonstrate that complexes may be internalized by an active transport, as reported by other authors, but they are also able to enter cells by passive diffusion. | [
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PMC9817179 | A low 405 nm activation power was used to ensure sufficiently sparse activation of PA-JF646-labeled proteins and allow for SPT. | [
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PMC11095939 | Protein concentrations were quantified using a BCA Protein Assay Kit. | [
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PMC11279397 | This enabled us to integrate these virus-associated target genes with the Perilla-related target genes for subsequent analysis. | [
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PMC9268183 | The field of ethnobotany focuses on documenting traditional knowledge and uses associated with plants, providing baseline information for plant screenings to be used during the treatment and/or prevention of certain diseases . | [
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PMC11155445 | Compounds (101a–c) also showed prominent activity against HepG2 having cell viability of 35.01%, 37.31%, and 39.22%, respectively, while compounds (101e and 101f) were found least active against all tested cancer cell lines having high cell viability (63.75–82.81%) (Fig. 37). | [
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PMC9454852 | cDNA then was obtained utilizing the Transcriptor First Strand cDNA Synthesis Kit (Roche Diagnostics GmbH, Penzberg, Germany). | [
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PMC9587866 | This was achieved through GalaxyRefine database, which further improved the structural and topical features of EYA3 protein model. | [
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PMC9429973 | The primary objective is to determine the safety and tolerability (phase 1) and overall response rate (ORR, defined as CR+mCR) (phase 2) of Ven+ASTX727 combination. | [
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PMC11770199 | Mice were treated every 3 or 4 d for 4 times. | [
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PMC9429973 | E. Kugler, S. Madiwale, D. Yong, Y. Birger, J. A. I. Thoms, D. B. Sykes, M. Yassin, N. Aqaqe, A. Rein, H. Fishman, I. Geron, C.-W. Chen, B. Raught, Q. Liu, M. Milyavsky, J. Pimanda, G. G. Privé, S. Izraeli Institute of Hematology, Davidoff Cancer Center, Rabin medical center, Petah Tikva; Department of Human Molecular Genetics and Biochemistry, Sackler Medical School, Tel Aviv University, Tel Aviv, Israel; Department of Biochemistry, University of Toronto, Toronto, Canada; The Rina Zaizov Pediatric Hematology and Oncology Division, Schneider Children’s Medical Center, Petach Tikva, Israel; Adult Cancer Program, Lowy Cancer Research Centre; Faculty of Medicine, UNSW Sydney, Sydney, Australia; Center for Regenerative Medicine, Massachusetts General Hospital, Boston; Harvard Stem Cell Institute, Cambridge, United States of America; Department of Pathology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel; Department of Systems Biology, Beckman Research Institute, City of Hope, Duarte; Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston; City of Hope Comprehensive Cancer Center, Duarte, United States of America; Princess Margaret Cancer Centre, University Health Network, Toronto, Canada Background: The ETS transcription factor ERG is essential for the maintenance of hematopoietic stem cells. | [
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PMC11261875 | The upregulation of GLUT expression can play a vital role in the acquisition of imatinib resistance by GIST and cell survival. | [
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PMC11271278 | Source data for the (H) are provided as a Source Data file. | [
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PMC11087055 | Aphidicolin (SIGMA, A0781), dissolved in DMSO (SIGMA, B23151), was added to Tyrode’s solution to a final concentration of 0.1–100 μM. Embryos were isolated, and soaked in Tyrode’s solution with either 0.3% DMSO (control), or various concentrations of aphidicolin for 15 minutes at 37 °C. | [
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PMC5811757 | MTT assay was used to assess viability of CRISPR/Cas9 treated cells in the presence of various concentrations of doxorubicin. | [
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PMC11739504 | Next, minced tissue was incubated for 30–40 min in the 37 °C incubator with 0.05% Trypsin–EDTA (LS015-01; Welgene). | [
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PMC5308810 | We first analyzed the phenotypic heterogeneity of A2780 and its doxorubicin-resistant cell lineage (A2780/ADR) by screening for the presence of live (non-fixed) cell subsets that express cell-surface CSC markers (CD44, CD133, and CXCR4) [26, 30–35]. | [
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PMC7338939 | A375 human melanoma cell line originated from a culture of a lymph node metastasis of a melanoma patient (31), and NA8 (originated from the culture of malignant melanoma) was a gift from Dr. Giulio Spagnoli (University Hospital of Basel, Switzerland). | [
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PMC9878562 | The observation suggests that the C-terminus is necessary for ACKR3 activity during VAL cell migration. | [
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PMC11680982 | HER2 expression in HR/HER2-0 and HR/HER2-low breast cancer subtypes by fluorescence quantitative PCR assay, P = 0.015, *P < 0.05; n = 3. | [
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PMC11155445 | From these analyses it was concluded that the seven acyl thiourea exhibit potent anti-inflammatory activity and activity was found dose-dependent, thus by increasing the concentration, the anti-inflammatory activity of the acyl thiourea increases. | [
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PMC11650848 | Together, this study sheds light on the regulation of this interesting and epigenetically sensitive gene, as well as providing insights into the potential biological mechanism explaining the beneficial effect of maternal FA during pregnancy on the epigenome and neurodevelopment in the child. | [
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PMC11298021 | These cells were subsequently transfected with 50 nM of FAM-labeled Scramble using TurboFect transfection reagent (Thermo Fisher, USA) for 48 hours. | [
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PMC11772585 | Collectively, these findings support the conclusion that inhibiting METTL1 suppresses cSCC cell survival, migration, and invasion. | [
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PMC10551595 | The RMSD values were 1.65, 1.16, 0.80 and 0.57 Å, respectively, which confirmed docking accuracy. | [
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PMC11747467 | A total of 12 basal and 19 luminal MIBC samples were determined. | [
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PMC11706297 | In particular, 3,5-diaryl-4,5-dihydro-1H-pyrazole derivatives have been extensively screened for a wide range of biological activities, including anticancer activity [19–22]. | [
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PMC11127909 | B Scatterplot showing the negative correlation between EFHD1 and C-caspase 3 expression, N = 32. | [
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PMC11286266 | Under basal conditions, ATF6α predominantly existed as a high mobility monomer in both 2K-parental and 2K-CRT∆ cells, with the appearance of an even faster-migrating processed N-ATF6α form in 2K-CRT∆ cells, consistent with the findings presented in Figure 3B. | [
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... |
PMC11512230 | ES36 were grown on coverslips (2 × 10 cells per coverslip) covered with 1% laminin 24 h prior to treatment. | [
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"tokens": [
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... |
PMC10213179 | Various strategies have been employed to target and modulate EphA2 activation. | [
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PMC11357960 | Flow-cytometry dot plots showed the strategy for gating peripheral blood lymphocyte cells with CD69 and Annexin V phenotype. ( | [
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... |
PMC6442998 | Blue arrows: KIT inhibition by imatinib led to downregulation of major pathways such as MAPK/ERK or PKB controlling expression of viability factors. | [
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... |
PMC11566417 | a Results from qPCR analysis were plotted on a heatmap to show transcript expression in primary and immortalized lines at p10 and p20. | [
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"O",
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"tokens": [
"a",
... |
PMC11345828 | The mixtures were incubated for 3 h and signal (Delta F) was measured on the Biotek Cytation 3 equipped with a filter cube containing an Ex 340/30 nM Em 620/10 filter and an Ex 340/30 Em 520/10 filter. | [
{
"tags": [
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... |
PMC11637276 | The correlation and reproducibility of the hits were the main criteria for selecting the hits; this approach has been conventionally followed in many studies [23,108–110]. | [
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"tags": [
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... |
PMC11640476 | No disagreements were observed for the high confluency (Figure 1). | [
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PMC9429973 | Several heterozygous hypomorphic/dominant negative (DN) variants of CARD11 have demonstrated a loss of protein function, exhibiting high penetrance and variable expressivity. | [
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"tags": [
"O",
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"tokens": [
... |
PMC11474209 | This target-responsive and signal-amplification technology allowed the creation of colorimetric biosensors.(Fe₃O₄@SiO₂) and (PDA/CuNPs)water samples0.05 μg/LSandwich-type composites were magnetically separated by Fe3O4@SiO2PDA/CuNPs. | [
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"tokens": [
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"targ... |
PMC11686380 | These results obtained from knockout mice highlight the importance of GAP43 in neuronal connectivity. | [
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"tags": [
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"O",
"O",
"O",
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PMC9429973 | Results: Characteristics of transplantation were presented in Table-1. | [
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"tags": [
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"O",
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"O",
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]
... |
PMC11802929 | For Supplementary Fig. 8b, Dominant TCRs were removed to test whether our result is biased by large clones. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"tokens": [
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PMC11703896 | The extracted rapamycin showed a peak at retention time 6.189 min similar to the peak observed in the standard rapamycin. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"tokens": [
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PMC11650848 | The diagonal line of squares in the middle is the Functional OR Genomic Element Database (FORGEdb) scores which are out of 10 and is used to predict if genetic variants are likely to be regulatory elements. | [
{
"tags": [
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
"O",
"O",
"O",
... |
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