PMCID string | Sentences string | ner list |
|---|---|---|
PMC11679892 | All statistical analyses were performed using SPSS software (Statistical Package for the Social Sciences version 21, Chicago, IL, USA). | [
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PMC9646302 | This study had some limitations. | [
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PMC11585254 | Data represent the mean ± S.D. from three independent experiments. | [
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PMC11055323 | We tested this hypothesis with the compound A-485, a highly selective and drug-like CBP/p300 catalytic inhibitor , to decrease the over-deposited H3K27ac modification in SS18-SSX condensates (Supplementary Fig. 13a). | [
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PMC11247842 | We observed a clear advantage of using MR-MEGA over METAL for GWAS meta-analysis in this study. | [
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PMC11078693 | Kimwipes can also be used. | [
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PMC11770130 | g Scheme of the establishment of CerS2 mouse strain. | [
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PMC9429973 | In the 1:1 matched population (N=418, 209 patients treated with tisa-cel and 209 patients treated with axi-cel), the best ORR/CRR was 66/42% versus 80/60% for patients treated with tisa-cel compared with axi-cel, respectively (P<0.001 for both ORR and CRR comparisons). | [
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PMC11659921 | I, J) Altered ability to promote angiogenesis after inhibition of TNFSF11 in A2780 and HEY cell lines. ( | [
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PMC11389534 | Apart from RPL26 UFMylation mediated ER‐ribosome‐associated quality control (ER‐RQC) system, the control of ER proteostasis by UFMylation is achieved through several other mechanisms. | [
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PMC10840195 | The cells were inoculated in 6-well plates one day in advance, and then trypsin without EDTA was used for digestion and collection. | [
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PMC9429973 | Aims: We sought to define patient profiles correlated with manufacturing and clinical endpoints in RRMM patients treated with ide-cel in clinical trials using unsupervised clustering and multivariate machine learning across multiple key variable domains. | [
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PMC11552389 | Overexpression studies were conducted using GV141 plasmids carrying FOXN3 expression vectors in A375 cells, while downexpression studies utilized FOXN3-specific shRNA-expressing plasmids (shR1 and shR2) in A875 cells. | [
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PMC11759543 | Total proteins from cells were extracted using PRO-PREP protein extraction solution (iNtRON Biotechnology Inc, Korea) supplemented with sodium fluoride (Honeywell Riedel-de-Haen, USA) and sodium orthovanadate (Sigma-Aldrich, USA). | [
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PMC10932641 | More and more research has found that miRNA has close interactions with lncRNA. | [
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PMC8922418 | For this purpose, in 2013, Ebina et al. reported that HIV-1 gene expression was successfully suppressed in the Jurkat cell line by CRISPR/SpCas9 mediated targeting of the NF-κB cassettes located in the U3 region and the TAR sequence in the R region of LTR. | [
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PMC9096373 | The maximum diameter (dmax) and minimum diameter (dmin) of tumors in each group was measured using a vernier caliper every 2 days starting from the first day post-administration until the 25th day. | [
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PMC11592837 | Starting at 4 h incubation time, fluorescence-positive cells also increased among controls, albeit without statistical significance, and in both PBMCs and Jurkat cells, the γH2AX signal in response to ETP and DOX seemed to decline. | [
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PMC11650848 | Polymorphic base located between the fifth and sixth CpG site (asterisk) corresponds with the rs365052. | [
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PMC11747885 | SGI-1027 (1) is a quinoline-based non-nucleoside that selectively inhibits DNA methyltransferases (DNMTs) with IC50 values of 6–13 μM and has low cytotoxicity.1 is composed of four core aromatic moieties, including an aminopyrimidine group (R) and a quinoline moiety (R), which are critical for its interaction with DNMT... | [
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PMC11707832 | Missense mutations in MAN2B1 can be classified into two primary categories: Active site-disrupting mutations: These genetic alterations result in the production of translationally defective proteins. | [
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PMC10849234 | PLB-985 cells were treated with 50 μl of the concentrated lentivirus and 2 mg/ml Polybrene (Sigma; catalog # H9268-5G). | [
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PMC11371747 | As to the NSCLC cell lines, H292 and H460 cells exhibited the highest and lowest expression relative to CEM cells, with values of 8 and 1, respectively (Figure 6A). | [
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PMC11429241 | The cells were maintained at 37 °C in a humidified atmosphere at 5% CO2 and were regularly passaged after they reached confluence. | [
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PMC11753949 | In order to identify the region(s) within synaptopodin responsible for its property to crosslink actin bundles to the ER, we generated several truncation mutants of this protein and tested them for their property to generate the actin-rich ER-associated structures described above. | [
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PMC11679892 | Continuous variables are given as mean ± standard deviation, and categorical variables are given as a number and percentage. | [
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PMC9429973 | These observations were consistent with previous reports in non-molecularly defined HR subgroups from KarMMa and the hypothesis that CAR T MOA may have a broader spectrum of clinical activity across more diverse molecular subtypes of pts, especially existing HR subsets; this could be a consideration as CAR Ts are devel... | [
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PMC11755467 | Indeed, Enoxacin treatment enhanced siREN-mediated suppression of renilla expression (up to three-fold), concluding that a similar RNAi-enhancing effect is present in CEM-SS cells as described (Figure S1c, ). | [
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PMC11765879 | Different concentrations were used ranging from 10 to 100 µM for 48 h. The percentage of cell viability was significantly reduced in both cell lines (Figure 4). | [
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PMC11489175 | Of note, USP14 expression has been related to patient survival. | [
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PMC9429973 | According to Hans algorithm, 19 (31%) GCB origin, 42 (68%) were non-GCB. | [
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PMC11615828 | Transfected COS7 cells, HeLa cells, and MDCK cells were imaged at intervals of 2.5 or 5 s. Vesicle trajectories were analyzed using Fiji software with the Trackmate plugin. | [
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PMC11023271 | A. Heated FBS retained its ability to down-regulate RIPK4 mRNA in HaCaT cells. | [
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PMC8992508 | Compound 62 (HM30181) has been recently identified as a third-generation P-gp inhibitor [Figure 12]. | [
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PMC11248911 | A model was used for predicting the validation test set compounds biological activity (External validation). | [
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PMC9429973 | Summary/Conclusion: The above steps provide a practical outline, which may vary depending on the aims. | [
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PMC11291490 | Vaccination is a pivotal strategy for prevention and containment of virus transmission. | [
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PMC11643361 | This large variety of different substituents, heterocycles, and central atoms that can be used makes scorpionates a very diverse family of ligands with different properties and activities. | [
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PMC11765243 | Genetic models complement studies on the effect of specific inhibitors and thus, using a conditional transgenic mouse model, we showed here the implication of PI3K-p110α in the intracell signaling and differentiation of thymocytes, particularly in the DP and SP CD4 stages and in the differentiation of thymic Tregs. | [
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PMC11534377 | Data normalization was executed using the GeneSpring GX program (Agilent Technologies), applying the quantile algorithm. | [
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PMC11533140 | Isoform selectivity study of the selected compounds. | [
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PMC11435360 | The total tumor burden was represented as the bladder wall volume, which was a modification from a previously described method . | [
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PMC11799978 | Clinical findings demonstrate that the number, morphology, and functions of CAFs in tumors are correlated with the patients’ survival and treatment outcome. | [
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PMC10965680 | Due to the geographical location and different living environments, closed and natural mating conditions have existed for a long time, and as a result of the low intensity of artificial selection, these breeds are not very distinct from each other. | [
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PMC4112127 | The AUC was 0.83, indicating strong association. | [
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PMC11766174 | It should be noted that, in these experiments, normalization per million was achieved by extrapolation. | [
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PMC11490153 | Further studies have demonstrated that hypoxia can either enhance or diminish drug effectiveness. | [
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PMC9429973 | The TL in BM-MSC was not influenced by age (p=0.360), disease severity, and other hematological parameters. | [
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PMC11640555 | These events are also controlled and driven by specific markers, such as Ki-67 and TGF-β, that are considered prognostic markers in the GBM filed. | [
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PMC9429973 | Together with low transcriptional levels of iron genes, 697 viability did not change with different FAC treatments. | [
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PMC10813895 | However, all isoforms retain the ETS DNA-binding domain. | [
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PMC11694066 | All uncropped images of the blots included in this study are also available in Supplementary information. | [
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PMC11799620 | Thus, more attention should be given to investigating this plant’s capacities and isolating and identifying its bioactive molecules. | [
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PMC6742971 | We adoptively transferred mixtures of a low avidity T cell clone with a high avidity T cell clone. | [
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PMC8009078 | The average RMSF value can give an idea about the fluctuation of the amino residues during the simulation. | [
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PMC11298021 | TurboFect reagent was utilized to transfect miR-3143, miR-3182, and their respective combinations into Jurkat cells. | [
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PMC11705630 | The proliferation rate was assessed at 0, 24, 48, and 96 h using Cell Counting Kit-8 (CCK8) (Dojindo Molecular Technologies, Kumamoto, Japan) assay. | [
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PMC11534377 | In preclinical models, this synergistic approach has improved cancer treatment efficacy, suggesting it could be more effective against NSCLC by utilizing their complementary mechanisms of action . | [
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PMC11802929 | Each amino acid’s features are replicated across the corresponding positions in the matrix. | [
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PMC11638764 | DOI: 10.22002/sfn6b-q2r37 | [
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PMC11721064 | A and B IF staining (A) and quantification of CK12 + cells (B) showed that Stattic treatment significantly decreased the population of CK12 + cells (CK12: p < 0.001) (scale bar = 50 μm). | [
{
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PMC8345486 | RPMI-1640 ATTC medium (ATCC-30-2001) and FBS (ATCC-30-2025) for the initiation of OVCAR-3 cell culture were purchased from LGC Standards (Teddington, UK). | [
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PMC9960565 | Fluorescence: λex = 380 nm, λem, max = 440 nm. | [
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PMC9504875 | This region contains the SPRY domain, suggesting that interaction of RIG-I with TRIM25 is competitively inhibited by N protein (Figure 4). | [
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PMC11731614 | The HFD keratinocytes had impaired wound healing during the 3 days of observation (Supplemental Fig. 1A-B), consistent with what has been shown in scratch assays with high glucose exposure (Dam, 2017) and what is observed in diabetic patients (Nowak et al., 2021). | [
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PMC11777207 | PlatE cells were maintained in Dulbecco’s modified Eagle’s medium (DMEM, Corning) and supplemented with 10% FBS, penicillin-streptomycin, sodium pyruvate, Hepes, NEAA, and 2-mercaptoethanol. | [
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PMC11727062 | An additional study has reported that β-elemene, when administered for the treatment of xenograft animal models, does not induce ocular toxicity in mice. | [
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PMC9429973 | There were no differences with the intensity of conditioning (Myeloblative 78.5% and reduced intensity 72%) although the highest severe cases was observed of myeloablative unrelated transplant (66.5%; p-value 0.03). | [
{
"tags": [
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PMC11409031 | When the members of the Bcl-2 gene family are not properly regulated, it can hinder cell apoptosis and elevate the survival rate of tumor cells. | [
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PMC11367146 | Table 4MMPBSA analysis of docked complex. | [
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PMC8481254 | Additionally, we found that OGT, the only endogenous enzyme that catalyzes O-GlcNAcylation, was positively regulated by CDK19 (Fig. 5A–C). | [
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PMC8316344 | Cell proliferation and DNA damage were tested by a cell counting kit-8 (CCK-8, HY-K0301, MCE) and DNA damage assay kit (ab211154, Abcam), respectively, according to the manufacturer’s instructions. | [
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PMC11792888 | Western blot of apoptosis-related proteins Bax and Bcl-2. ( | [
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PMC11705862 | Sections stained against AT8, IRIS-1 and IRIS-2 were analyzed using confocal microscopy. | [
{
"tags": [
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"O",
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"O",
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PMC11711345 | Otherwise, regional drug targeting in the gastrointestinal tract may be considered a reliable pharmaceutical approach in other cancer therapies, given the moderate-to-high probability of metabolisms by cytochromes P450. | [
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"tags": [
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PMC11536589 | Representative images of 4-HNE detected in the removed tumor tissues by immunohistochemistry staining of four groups. | [
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"tokens": [
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... |
PMC10728200 | Although TKIs have been developed to the fourth generation, acquired drug resistance remains a problem. | [
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"O",
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"tokens": [
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... |
PMC9444294 | HSSYII and U2OS cells were seeded in 8-well chamber slides and grown for 24h. | [
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"tokens": [
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PMC9429973 | PCA analysis of matched samples stored in either EDTA or PAXgene tubes showed high similarity in gene expression, while the correlation between TPM expression values and decay constants indicates that genes over-abundant in EDTA samples are not dominated by slow-degrading transcripts. | [
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"tags": [
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
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... |
PMC8389560 | At the same time, the antagonist of P2Y receptors (MRS-2179) suppressed signals for application of 2.5 µg/mL SeNP in almost all cells (Figure 5B) and only in single cells were low-amplitude Ca signals recorded. | [
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"tags": [
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PMC9817179 | U2OS cells expressing (A) EGFP-FUS(FL) and (B) TAF15(IDR)-Halo-FTH1, and (C) an A673 cell expressing endogenous EWS::FLI1-Halo are imaged using confocal fluorescence microscopy before and after 10 min of fixation with 4% paraformaldehyde (PFA). | [
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PMC9429973 | Young adults (20-39 yr) with BL showed great improvement (+21%) with survival progressing towards the level seen in children. | [
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"tags": [
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... |
PMC11599565 | Spheroids were then enzymatically and mechanically dissociated using trypsin EDTA. | [
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"O",
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PMC8041314 | This downsized the compound library to 25,060 potential multitarget ABCB1, ABCC1, and ABCG2 inhibitors. | [
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PMC7685376 | Top 15 of pathway enrichment. | [
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"O",
"O",
"O"
],
"tokens": [
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PMC11487720 | Fig. 4Dramatic increases in cell thickness during apoptosis, but not BCD, determined by time-lapse holographic microscopy. | [
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"O",
"O",
"O",
"O",
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PMC11476004 | In our study, the St. Bernard dogs and Bernese mountain dogs in which tumours were diagnosed and the level of genome instability was tested were large, Molosser-type dogs. | [
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"tags": [
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... |
PMC9065483 | Unfortunately, clinical developments of OV monotherapies have stalled in part due to frequent tumor resistance to infection. | [
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"tags": [
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"tokens": [
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PMC11388384 | Sender cells were induced to secrete SHH-Halo for 16 to 24 h before imaging SHH-Halo. | [
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"O",
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"tokens": [
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PMC10965680 | Linkage disequilibrium (LD) was assessed using the r statistic and PopLDdecay v3.40 software (Hudson et al., 1992), which considered the physical distance between pairwise SNPs with default settings. | [
{
"tags": [
"O",
"O",
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"O",
... |
PMC11770130 | a–f Expression levels of UPR-related genes (a, b) and proteins (c–f, n = 3) in the adipose tissues of control and Ntsr2 AKO mice; n = 3–6. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC9429973 | Stage at diagnosis was not significant. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Stage",
"at",
"diagnosis",
"was",
"not",
"significant",
"."
]
}
] |
PMC11489351 | For example, we identified a small number of TFs and cotranscriptional activators with pH-sensitive expression based on the differentially regulated RNA-Seq dataset (Fig. 7A). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC11551844 | Afterwards, the cells were detached and enumerated using a haemocytometer and microscope (inverted light). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Afterwards",
",",
"the",
"cells",
"were",
"... |
PMC11473843 | Representative hematoxylin & eosin (H&E) staining (left) and quantification of the average tumor size (middle) and tumor number (right) of lung tissue from LSL-Kras;p53 mice treated as in (A). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC11699178 | To further elucidate the signaling pathway through which GEM exerts its anticancer effects, ovarian cancer cells treated with GEM were subjected to high-throughput sequencing, and the resulting transcriptome count matrix was analyzed using edgeR software, leading to the identification of 308 DEGs, with 227 significantl... | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC10212663 | A flow chart of the whole procedure of this work. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"A",
"flow",
"chart",
"of",
"the",
"whole",
"procedure",
"of",
"this",
"work",
"."
]
... |
PMC11637284 | kDNA area measurements were performed on three days tetracycline-induced cells. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"kDNA",
"area",
"measurements",
"were",
"performed",
"on",
"three",
"days",
"tetracycline-induced",
... |
PMC10887351 | In the urinary bladder, the sympathetic-mediated relaxation in humans, monkeys, and dogs was dependent on β3-AR activation . | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"the",
"urinary",
... |
PMC11247842 | The predicted regulatory elements from ATAC-seq, H3K4me3, H3K27me3, H3K27ac, H3K4me1, and CTCF were retrieved from a recently published data set . | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tok... |
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