Datasets:
OTAR3088
/
BioData-CellLine_annotated

Dataset card Data Studio Files
xet
Community
1
PMCID
string
Sentences
string
ner
list
PMC11594074
DNMT1 has the ability to modulate crucial genes and pathways involved in cell survival .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "DNMT1", "has", "the", "ability", "to", "modulate", "crucial", "genes", "and", "pathways", "involved", "in", "cell", "survival", "." ] } ]
PMC9429973
Secondary endpoints included overall response rate (ORR), progression free survival (PFS), overall survival (OS) & toxicity according to NCI-CTCAE version 5 Results: Sixty-three patients were screened and 55 enrolled between 03/2018 and 09/2021.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Secondary", "endpoints", "included", "overall", "response", "rate", "(", "ORR", ")", ",", "progression", "free", "survival", "(", "PFS", ")", ",", "overall", "survival", "(", "OS", ")", "&", "toxicity", "according", "to", "NCI-CTCAE", "version", "5", "Results", ":", "Sixty-three", "patients", "were", "screened", "and", "55", "enrolled", "between", "03/2018", "and", "09/2021", "." ] } ]
PMC5963610
We have also tried to exogenously incorporate synthetic NGcGM3 on 4T1 and 3LL-cells in culture.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "B-CellLine", "O", "B-CellLine", "O", "O", "O" ], "tokens": [ "We", "have", "also", "tried", "to", "exogenously", "incorporate", "synthetic", "NGcGM3", "on", "4T1", "and", "3LL-cells", "in", "culture", "." ] } ]
PMC11513011
In T24, the RAS gene is mutated and possesses active Ras, while 5637 cells do not.
[ { "tags": [ "O", "B-CellLine", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "B-CellLine", "O", "O", "O", "O" ], "tokens": [ "In", "T24", ",", "the", "RAS", "gene", "is", "mutated", "and", "possesses", "active", "Ras", ",", "while", "5637", "cells", "do", "not", "." ] } ]
PMC9429973
Summary/Conclusion: Emavusertib as a monotherapy and in combination with ibrutinib is well tolerated with an acceptable long term safety profile and promising efficacy.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Summary/Conclusion", ":", "Emavusertib", "as", "a", "monotherapy", "and", "in", "combination", "with", "ibrutinib", "is", "well", "tolerated", "with", "an", "acceptable", "long", "term", "safety", "profile", "and", "promising", "efficacy", "." ] } ]
PMC11724582
Almonertinib may promote the accumulation of CAFs in NSCLC cells by increasing the secretion of TGF-β1.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Almonertinib", "may", "promote", "the", "accumulation", "of", "CAFs", "in", "NSCLC", "cells", "by", "increasing", "the", "secretion", "of", "TGF-β1", "." ] } ]
PMC9429973
USA has one of the highest prevalences of CD worldwide, with 214 per 100,000 diagnosed with CD.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "USA", "has", "one", "of", "the", "highest", "prevalences", "of", "CD", "worldwide", ",", "with", "214", "per", "100,000", "diagnosed", "with", "CD", "." ] } ]
PMC11487720
Homemade antibodies were against: 1) WWOX7-21, 2) pY33-WWOX, and 3) pS14-WWOX [15–17].
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Homemade", "antibodies", "were", "against", ":", "1", ")", "WWOX7", "-", "21", ",", "2", ")", "pY33-WWOX", ",", "and", "3", ")", "pS14-WWOX", "[", "15–17", "]", "." ] } ]
PMC10094992
Further studies could clarify these hypotheses, with to the goal of identifying novel agents, including NR6, capable of affecting the NAD/NADH ratio under pathological settings to achieve therapeutic effects, as demonstrated for example for KP372-1 as a potent NQO1-mediated redox cycling agent.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Further", "studies", "could", "clarify", "these", "hypotheses", ",", "with", "to", "the", "goal", "of", "identifying", "novel", "agents", ",", "including", "NR6", ",", "capable", "of", "affecting", "the", "NAD/NADH", "ratio", "under", "pathological", "settings", "to", "achieve", "therapeutic", "effects", ",", "as", "demonstrated", "for", "example", "for", "KP372", "-", "1", "as", "a", "potent", "NQO1-mediated", "redox", "cycling", "agent", "." ] } ]
PMC11366496
The reports above, in addition to our research, provide evidence suggesting that the JAK/STAT signal pathway leads to the malignant progression of tumors.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "reports", "above", ",", "in", "addition", "to", "our", "research", ",", "provide", "evidence", "suggesting", "that", "the", "JAK/STAT", "signal", "pathway", "leads", "to", "the", "malignant", "progression", "of", "tumors", "." ] } ]
PMC11740399
The Cell Counting Kit-8 assay was used to determine the cell viability by treating cells with a medium containing either the vehicle solution (control), the cell membrane hybrid liposomes (ML), 3025@ML, or compound 3 K. The antiproliferative activities were investigated after treating cells with OXA + 3025@ML and compound 3 K + OXA.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "Cell", "Counting", "Kit-8", "assay", "was", "used", "to", "determine", "the", "cell", "viability", "by", "treating", "cells", "with", "a", "medium", "containing", "either", "the", "vehicle", "solution", "(", "control", ")", ",", "the", "cell", "membrane", "hybrid", "liposomes", "(", "ML", ")", ",", "3025@ML", ",", "or", "compound", "3", "K.", "The", "antiproliferative", "activities", "were", "investigated", "after", "treating", "cells", "with", "OXA", "+", "3025@ML", "and", "compound", "3", "K", "+", "OXA", "." ] } ]
PMC5308810
CXCR4 was not only more resistance to doxorubicin, paclitaxel, or cisplatin treatment but also played a dominant role in controlling acquired and possibly innate drug resistance.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "CXCR4", "was", "not", "only", "more", "resistance", "to", "doxorubicin", ",", "paclitaxel", ",", "or", "cisplatin", "treatment", "but", "also", "played", "a", "dominant", "role", "in", "controlling", "acquired", "and", "possibly", "innate", "drug", "resistance", "." ] } ]
PMC11741906
Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis was used to identify nine differentially expressed miRNAs' putative targets (highlighted by different colors).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Kyoto", "Encyclopedia", "of", "Genes", "and", "Genomes", "(", "KEGG", ")", "analysis", "was", "used", "to", "identify", "nine", "differentially", "expressed", "miRNAs", "'", "putative", "targets", "(", "highlighted", "by", "different", "colors", ")", "." ] } ]
PMC11754436
Ultimately, only NPEPPS was found to be downregulated and differentially expressed in OS.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Ultimately", ",", "only", "NPEPPS", "was", "found", "to", "be", "downregulated", "and", "differentially", "expressed", "in", "OS", "." ] } ]
PMC10976516
Especially lung adenocarcinoma (90% vs. 35%) was higher among never-smokers than among ever-smokers, suggesting fundamental differences in lung cancer ontology between these two different groups of patients.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Especially", "lung", "adenocarcinoma", "(", "90", "%", "vs.", "35", "%", ")", "was", "higher", "among", "never-smokers", "than", "among", "ever-smokers", ",", "suggesting", "fundamental", "differences", "in", "lung", "cancer", "ontology", "between", "these", "two", "different", "groups", "of", "patients", "." ] } ]
PMC11279397
The analysis revealed a significant overlap between 671 Perilla target genes and 2791 HSV-related target genes, 6899 SARS-CoV-2-related target genes, 3211 influenza virus-related target genes, and 9015 human immunodeficiency virus-related targets.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "analysis", "revealed", "a", "significant", "overlap", "between", "671", "Perilla", "target", "genes", "and", "2791", "HSV-related", "target", "genes", ",", "6899", "SARS-CoV-2-related", "target", "genes", ",", "3211", "influenza", "virus-related", "target", "genes", ",", "and", "9015", "human", "immunodeficiency", "virus-related", "targets", "." ] } ]
PMC11295144
The HEK293 cell body was visualized by GFP (green), GABAergic terminals were labeled with an anti-VGAT antibody (blue) and NL2 was mcherry-tagged (red).
[ { "tags": [ "O", "B-CellLine", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "HEK293", "cell", "body", "was", "visualized", "by", "GFP", "(", "green", ")", ",", "GABAergic", "terminals", "were", "labeled", "with", "an", "anti-VGAT", "antibody", "(", "blue", ")", "and", "NL2", "was", "mcherry-tagged", "(", "red", ")", "." ] } ]
PMC11476222
To overcome the complexities of ganglioside studies, including variations in extraction efficiency and matrix interference, we employed internal standards—compounds of a similar structure, usually heavily labeled.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "To", "overcome", "the", "complexities", "of", "ganglioside", "studies", ",", "including", "variations", "in", "extraction", "efficiency", "and", "matrix", "interference", ",", "we", "employed", "internal", "standards", "—", "compounds", "of", "a", "similar", "structure", ",", "usually", "heavily", "labeled", "." ] } ]
PMC9429973
Subjects with previous SARS-COV2 infection had persistently low levels of PAI-1, supporting enhanced fibrinolysis activation.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Subjects", "with", "previous", "SARS-COV2", "infection", "had", "persistently", "low", "levels", "of", "PAI-1", ",", "supporting", "enhanced", "fibrinolysis", "activation", "." ] } ]
PMC8316344
Then, we asked if RSL3 and erastin could block TRIB2-mediated regulation of GPX4 during the process of ferroptosis.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Then", ",", "we", "asked", "if", "RSL3", "and", "erastin", "could", "block", "TRIB2-mediated", "regulation", "of", "GPX4", "during", "the", "process", "of", "ferroptosis", "." ] } ]
PMC11437637
Differences between the sample and population means are represented by t or Z, and sample characteristics are expressed as`x±s or M (P25, P75).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Differences", "between", "the", "sample", "and", "population", "means", "are", "represented", "by", "t", "or", "Z", ",", "and", "sample", "characteristics", "are", "expressed", "as`x±s", "or", "M", "(", "P25", ",", "P75", ")", "." ] } ]
PMC10297204
The stained sections were examined using a transmission electron microscope (Talos F200C G2, Thermo Fisher Scientific, Inc., NY, USA).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "stained", "sections", "were", "examined", "using", "a", "transmission", "electron", "microscope", "(", "Talos", "F200C", "G2", ",", "Thermo", "Fisher", "Scientific", ",", "Inc.", ",", "NY", ",", "USA", ")", "." ] } ]
PMC11655498
Transcription initiation of BZLF1 and BRLF1 is tightly regulated by various factors.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Transcription", "initiation", "of", "BZLF1", "and", "BRLF1", "is", "tightly", "regulated", "by", "various", "factors", "." ] } ]
PMC5311252
It is well known that increased E2F1 signaling as well as oncogenic MYC signaling can result in induction of apoptosis.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "It", "is", "well", "known", "that", "increased", "E2F1", "signaling", "as", "well", "as", "oncogenic", "MYC", "signaling", "can", "result", "in", "induction", "of", "apoptosis", "." ] } ]
PMC9429973
All donor types had been used.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "All", "donor", "types", "had", "been", "used", "." ] } ]
PMC8864075
Therefore, we believed that reTFAE inhibited the EMT process of A549 cells by inhibiting the PI3K/Akt signaling pathway.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "B-CellLine", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Therefore", ",", "we", "believed", "that", "reTFAE", "inhibited", "the", "EMT", "process", "of", "A549", "cells", "by", "inhibiting", "the", "PI3K/Akt", "signaling", "pathway", "." ] } ]
PMC10142392
The high degree of branching in these structures provides mechanical stability , which allows them to withstand the harsh conditions of the body’s environment.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "high", "degree", "of", "branching", "in", "these", "structures", "provides", "mechanical", "stability", ",", "which", "allows", "them", "to", "withstand", "the", "harsh", "conditions", "of", "the", "body", "’s", "environment", "." ] } ]
PMC11295144
Protein lysates were obtained from adult male rat cortex or HEK293 cells expressing GABAARs/NL2 via homogenization in lysis buffer (20 mM HEPES pH 7.4, 100 mM NaCl, 1% Triton X-100, 2 mM CaCl2, 1 mM MgCl2), containing phenylmethylsulfonyl fluoride (PMSF;10 μM), leupeptin, chymostatin, pepstatin (5 μg/mL each, Peptide Institute).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "B-CellLine", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Protein", "lysates", "were", "obtained", "from", "adult", "male", "rat", "cortex", "or", "HEK293", "cells", "expressing", "GABAARs/NL2", "via", "homogenization", "in", "lysis", "buffer", "(", "20", "mM", "HEPES", "pH", "7.4", ",", "100", "mM", "NaCl", ",", "1", "%", "Triton", "X-100", ",", "2", "mM", "CaCl2", ",", "1", "mM", "MgCl2", ")", ",", "containing", "phenylmethylsulfonyl", "fluoride", "(", "PMSF;10", "μM", ")", ",", "leupeptin", ",", "chymostatin", ",", "pepstatin", "(", "5", "μg/mL", "each", ",", "Peptide", "Institute", ")", "." ] } ]
PMC11748618
CHD1L weights were imputed using monocyte eQTLs from the Multi-Ethnic Study of Atherosclerosis cohort and PrediXcan on individual-level genotype data.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "CHD1L", "weights", "were", "imputed", "using", "monocyte", "eQTLs", "from", "the", "Multi-Ethnic", "Study", "of", "Atherosclerosis", "cohort", "and", "PrediXcan", "on", "individual-level", "genotype", "data", "." ] } ]
PMC11638764
Protein interaction networks were analyzed using the STRING database (version X, available at https://string-db.org/ ).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Protein", "interaction", "networks", "were", "analyzed", "using", "the", "STRING", "database", "(", "version", "X", ",", "available", "at", "https://string-db.org/", ")", "." ] } ]
PMC11627133
The fast and continuous ligand exchange of RhoBAST : SpyRho enables rapid acquisition of super‐resolved images with localization precision not limited by photobleaching.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "fast", "and", "continuous", "ligand", "exchange", "of", "RhoBAST", ":", "SpyRho", "enables", "rapid", "acquisition", "of", "super‐resolved", "images", "with", "localization", "precision", "not", "limited", "by", "photobleaching", "." ] } ]
PMC10605143
Western blot analyses of EMT markers revealed that HSF1 overexpression in MCF10A cells correlated with decreased expression of CDH1 and increased expression of VIM (Figure 3a).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "B-CellLine", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Western", "blot", "analyses", "of", "EMT", "markers", "revealed", "that", "HSF1", "overexpression", "in", "MCF10A", "cells", "correlated", "with", "decreased", "expression", "of", "CDH1", "and", "increased", "expression", "of", "VIM", "(", "Figure", "3a", ")", "." ] } ]
PMC9454178
Collectively, these results revealed that THZ1 exerts a potent antitumor effect on GIST cells in vivo.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Collectively", ",", "these", "results", "revealed", "that", "THZ1", "exerts", "a", "potent", "antitumor", "effect", "on", "GIST", "cells", "in", "vivo", "." ] } ]
PMC10329074
Increased YBX3 expression levels in ccRCC were positively associated with T stage [odds ratio (OR) = 1.926], pathological stage (OR = 1.830) and hemoglobin (OR = 1.558 for low and elevated vs. normal).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Increased", "YBX3", "expression", "levels", "in", "ccRCC", "were", "positively", "associated", "with", "T", "stage", "[", "odds", "ratio", "(", "OR", ")", "=", "1.926", "]", ",", "pathological", "stage", "(", "OR", "=", "1.830", ")", "and", "hemoglobin", "(", "OR", "=", "1.558", "for", "low", "and", "elevated", "vs.", "normal", ")", "." ] } ]
PMC9429973
The performance measures were computed using 10-fold cross-validation.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "performance", "measures", "were", "computed", "using", "10-fold", "cross-validation", "." ] } ]
PMC11806106
Data are always shown (if not indicated otherwise) as mean ± SEM, and group size is defined as n. Statistical analyses were performed with a paired Student’s t test or a two-tailed unpaired t test with Welch’s correction (as normality of data distribution was not given for every group) or, for more than two groups, by an ordinary one-way ANOVA (as SD’s were significantly different, a Brown–Forsythe and Welch’s ANOVA test were performed) with Dunnet’s T3 multiple comparisons test, as indicated.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Data", "are", "always", "shown", "(", "if", "not", "indicated", "otherwise", ")", "as", "mean", "±", "SEM", ",", "and", "group", "size", "is", "defined", "as", "n.", "Statistical", "analyses", "were", "performed", "with", "a", "paired", "Student", "’s", "t", "test", "or", "a", "two-tailed", "unpaired", "t", "test", "with", "Welch", "’s", "correction", "(", "as", "normality", "of", "data", "distribution", "was", "not", "given", "for", "every", "group", ")", "or", ",", "for", "more", "than", "two", "groups", ",", "by", "an", "ordinary", "one-way", "ANOVA", "(", "as", "SD", "’s", "were", "significantly", "different", ",", "a", "Brown", "–", "Forsythe", "and", "Welch", "’s", "ANOVA", "test", "were", "performed", ")", "with", "Dunnet", "’s", "T3", "multiple", "comparisons", "test", ",", "as", "indicated", "." ] } ]
PMC9429973
One patient with newly developing clonal CIN and one patient with disappearance of clonal hematopoiesis were found at follow-up after 4 and 98 months, respectively.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "One", "patient", "with", "newly", "developing", "clonal", "CIN", "and", "one", "patient", "with", "disappearance", "of", "clonal", "hematopoiesis", "were", "found", "at", "follow-up", "after", "4", "and", "98", "months", ",", "respectively", "." ] } ]
PMC9985266
In conclusion, our results suggest that MRC-5 cell fibrosis is significantly increased after TGF-β1 induction and that IL-27 treatment attenuates TGF-β1-induced PF in vitro.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "B-CellLine", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "In", "conclusion", ",", "our", "results", "suggest", "that", "MRC-5", "cell", "fibrosis", "is", "significantly", "increased", "after", "TGF-β1", "induction", "and", "that", "IL-27", "treatment", "attenuates", "TGF-β1-induced", "PF", "in", "vitro", "." ] } ]
PMC9429973
Currently available frontline therapies for TP53-mutated AML include intensive chemotherapy (IC), hypomethylating agents (HMAs), and venetoclax combined with HMA (VEN+HMA).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Currently", "available", "frontline", "therapies", "for", "TP53-mutated", "AML", "include", "intensive", "chemotherapy", "(", "IC", ")", ",", "hypomethylating", "agents", "(", "HMAs", ")", ",", "and", "venetoclax", "combined", "with", "HMA", "(", "VEN+HMA", ")", "." ] } ]
PMC9429973
We analyzed all the exons parts of these genes.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "We", "analyzed", "all", "the", "exons", "parts", "of", "these", "genes", "." ] } ]
PMC11711347
Breast cancer, a type of malignancy that develops in the glandular tissue of the breast, is the most common cancer among women worldwide and a leading cause of cancer-related death .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Breast", "cancer", ",", "a", "type", "of", "malignancy", "that", "develops", "in", "the", "glandular", "tissue", "of", "the", "breast", ",", "is", "the", "most", "common", "cancer", "among", "women", "worldwide", "and", "a", "leading", "cause", "of", "cancer-related", "death", "." ] } ]
PMC11721277
Routine clinical use may benefit from this approach’s simplicity and low time consumption.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Routine", "clinical", "use", "may", "benefit", "from", "this", "approach", "’s", "simplicity", "and", "low", "time", "consumption", "." ] } ]
PMC11128598
In this study, we analyzed the effect of CQ, LBH and NHEJi, both individually or in combination, in four different tumor types, two with very high incidence: breast and colorectal cancer, and two with limited approved treatments and poor outcomes: head and neck cancer and glioblastoma.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "In", "this", "study", ",", "we", "analyzed", "the", "effect", "of", "CQ", ",", "LBH", "and", "NHEJi", ",", "both", "individually", "or", "in", "combination", ",", "in", "four", "different", "tumor", "types", ",", "two", "with", "very", "high", "incidence", ":", "breast", "and", "colorectal", "cancer", ",", "and", "two", "with", "limited", "approved", "treatments", "and", "poor", "outcomes", ":", "head", "and", "neck", "cancer", "and", "glioblastoma", "." ] } ]
PMC11095939
Specifically, we identified 10 NRs, which are ligand-dependent transcription factors that regulate cellular metabolism, proliferation, differentiation, and apoptosis.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Specifically", ",", "we", "identified", "10", "NRs", ",", "which", "are", "ligand-dependent", "transcription", "factors", "that", "regulate", "cellular", "metabolism", ",", "proliferation", ",", "differentiation", ",", "and", "apoptosis", "." ] } ]
PMC11594806
The activity of the P2XR4 receptor appears essential for promoting cell migration and the formation of branching tubular networks .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "activity", "of", "the", "P2XR4", "receptor", "appears", "essential", "for", "promoting", "cell", "migration", "and", "the", "formation", "of", "branching", "tubular", "networks", "." ] } ]
PMC11266100
The experimental day the cells were detached from the cell cultivation dish using Trypsin-EDTA solution (Thermo Fisher Scientific, Waltham, MA, United States) incubating for 3–10 min, centrifuged, and resuspended in the electroporation buffer (Table 1).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "experimental", "day", "the", "cells", "were", "detached", "from", "the", "cell", "cultivation", "dish", "using", "Trypsin-EDTA", "solution", "(", "Thermo", "Fisher", "Scientific", ",", "Waltham", ",", "MA", ",", "United", "States", ")", "incubating", "for", "3–10", "min", ",", "centrifuged", ",", "and", "resuspended", "in", "the", "electroporation", "buffer", "(", "Table", "1", ")", "." ] } ]
PMC3995603
Kwon et al. reported that the major compounds of A. capillaris are scopoletin, scopolin, scoparone, esculetin, quercetin, capillarisin, isorhamnetin, 3-O-robinobioside, isorhamnetin 3-O-galactoside, and chlorogenic acid .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Kwon", "et", "al.", "reported", "that", "the", "major", "compounds", "of", "A.", "capillaris", "are", "scopoletin", ",", "scopolin", ",", "scoparone", ",", "esculetin", ",", "quercetin", ",", "capillarisin", ",", "isorhamnetin", ",", "3-O-robinobioside", ",", "isorhamnetin", "3-O-galactoside", ",", "and", "chlorogenic", "acid", "." ] } ]
PMC10914904
Notably, cell survival can be induced by vtRNA 1-1 expression through activation of the phosphatidylinositol-3-kinase (PI3K)/protein kinase B (AKT) and the ERK1/2 MAPK signaling pathways .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Notably", ",", "cell", "survival", "can", "be", "induced", "by", "vtRNA", "1", "-", "1", "expression", "through", "activation", "of", "the", "phosphatidylinositol-3-kinase", "(PI3K)/protein", "kinase", "B", "(", "AKT", ")", "and", "the", "ERK1/2", "MAPK", "signaling", "pathways", "." ] } ]
PMC9429973
In all models we tracked clonal evolution from patients’ AML to P2-PDX highlighting that most of the variants were maintained, with very few variants acquired during model development.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "In", "all", "models", "we", "tracked", "clonal", "evolution", "from", "patients", "’", "AML", "to", "P2-PDX", "highlighting", "that", "most", "of", "the", "variants", "were", "maintained", ",", "with", "very", "few", "variants", "acquired", "during", "model", "development", "." ] } ]
PMC11392912
Our study also has some limitation since many more Indian spices have medicinal properties, could not be included in the present study, and can be explored in future studies.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Our", "study", "also", "has", "some", "limitation", "since", "many", "more", "Indian", "spices", "have", "medicinal", "properties", ",", "could", "not", "be", "included", "in", "the", "present", "study", ",", "and", "can", "be", "explored", "in", "future", "studies", "." ] } ]
PMC9429973
T. Thavayogarajah, G. Nair, S. Balabanov, M. G. Manz, D. Müller, U. Schanz Department of Medical Oncology and Hematology; Institute of Clinical Chemistry, University Hospital Zurich, Zurich, Switzerland Background: Acute myeloid leukemia (AML) is a hematological, clonal malignancy of the myeloid stem cell precursors, which is proliferative and is characterized by clonal evolution and genetic heterogeneity.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "T.", "Thavayogarajah", ",", "G.", "Nair", ",", "S.", "Balabanov", ",", "M.", "G.", "Manz", ",", "D.", "Müller", ",", "U.", "Schanz", "Department", "of", "Medical", "Oncology", "and", "Hematology", ";", "Institute", "of", "Clinical", "Chemistry", ",", "University", "Hospital", "Zurich", ",", "Zurich", ",", "Switzerland", "Background", ":", "Acute", "myeloid", "leukemia", "(", "AML", ")", "is", "a", "hematological", ",", "clonal", "malignancy", "of", "the", "myeloid", "stem", "cell", "precursors", ",", "which", "is", "proliferative", "and", "is", "characterized", "by", "clonal", "evolution", "and", "genetic", "heterogeneity", "." ] } ]
PMC9786247
A harmonized reference method for the molecular characterization of C. burnetii has yet to be designed.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "A", "harmonized", "reference", "method", "for", "the", "molecular", "characterization", "of", "C.", "burnetii", "has", "yet", "to", "be", "designed", "." ] } ]
PMC11574271
The expression profiles of miRNAs with potential as biomarkers can be utilized for the categorization, diagnosis, targeted treatment, and prognosis of diverse cancer types .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "expression", "profiles", "of", "miRNAs", "with", "potential", "as", "biomarkers", "can", "be", "utilized", "for", "the", "categorization", ",", "diagnosis", ",", "targeted", "treatment", ",", "and", "prognosis", "of", "diverse", "cancer", "types", "." ] } ]
PMC9429973
Deletions of TP53 are identified by fluorescent in situ hybridisation, however, TP53 variants can be identified through various molecular techniques, including Sanger sequencing and next-generation sequencing (NGS).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Deletions", "of", "TP53", "are", "identified", "by", "fluorescent", "in", "situ", "hybridisation", ",", "however", ",", "TP53", "variants", "can", "be", "identified", "through", "various", "molecular", "techniques", ",", "including", "Sanger", "sequencing", "and", "next-generation", "sequencing", "(", "NGS", ")", "." ] } ]
PMC11731161
In contrast, the mRNA levels of XPO1 increased following SEL treatment.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "In", "contrast", ",", "the", "mRNA", "levels", "of", "XPO1", "increased", "following", "SEL", "treatment", "." ] } ]
PMC10154097
Numerous researches are available that confirm the regulatory role of circRNAs in cancers through mechanisms that involve miRNAs.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Numerous", "researches", "are", "available", "that", "confirm", "the", "regulatory", "role", "of", "circRNAs", "in", "cancers", "through", "mechanisms", "that", "involve", "miRNAs", "." ] } ]
PMC9429973
Nine out of 10 pts were evaluable at the time of the analysis.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Nine", "out", "of", "10", "pts", "were", "evaluable", "at", "the", "time", "of", "the", "analysis", "." ] } ]
PMC10747160
Finally, 50 µL of commercial PBS was added to each well of the Nunc Maxisorp capture plate and allowed to sit at room temperature for 5 min.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Finally", ",", "50", "µL", "of", "commercial", "PBS", "was", "added", "to", "each", "well", "of", "the", "Nunc", "Maxisorp", "capture", "plate", "and", "allowed", "to", "sit", "at", "room", "temperature", "for", "5", "min", "." ] } ]
PMC8316344
A P < 0.05 was regarded as statistically significant.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "A", "P", "<", "0.05", "was", "regarded", "as", "statistically", "significant", "." ] } ]
PMC11461874
Statistical analysis of the data was performed using a two-tailed Student’s t test.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Statistical", "analysis", "of", "the", "data", "was", "performed", "using", "a", "two-tailed", "Student", "’s", "t", "test", "." ] } ]
PMC11772585
JC-1 can form red fluorescent aggregates in healthy mitochondria, but is transformed to green fluorescent monomers in depolarized mitochondria.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "JC-1", "can", "form", "red", "fluorescent", "aggregates", "in", "healthy", "mitochondria", ",", "but", "is", "transformed", "to", "green", "fluorescent", "monomers", "in", "depolarized", "mitochondria", "." ] } ]
PMC11638255
Relative expression levels of ATP7A in solid human pediatric cancers were plotted according to Immune Paediatric Signature Score (IPASS) status (cold vs. T cell-infiltrated) as previously published.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Relative", "expression", "levels", "of", "ATP7A", "in", "solid", "human", "pediatric", "cancers", "were", "plotted", "according", "to", "Immune", "Paediatric", "Signature", "Score", "(", "IPASS", ")", "status", "(", "cold", "vs.", "T", "cell-infiltrated", ")", "as", "previously", "published", "." ] } ]
PMC11736898
Ketoconazole, a non-specific cytochrome P-450 inhibitor, reduced proliferation of keloid and normal keratinocytes, but VID400, a specific CYP24A1 inhibitor, only significantly affected keloid keratinocyte proliferation.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Ketoconazole", ",", "a", "non-specific", "cytochrome", "P-450", "inhibitor", ",", "reduced", "proliferation", "of", "keloid", "and", "normal", "keratinocytes", ",", "but", "VID400", ",", "a", "specific", "CYP24A1", "inhibitor", ",", "only", "significantly", "affected", "keloid", "keratinocyte", "proliferation", "." ] } ]
PMC7504302
Many of these genetic lesions are loss of function aberrations spurred by point mutations and/or copy number alterations (CNA) affecting multiple regions of the genome .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Many", "of", "these", "genetic", "lesions", "are", "loss", "of", "function", "aberrations", "spurred", "by", "point", "mutations", "and/or", "copy", "number", "alterations", "(", "CNA", ")", "affecting", "multiple", "regions", "of", "the", "genome", "." ] } ]
PMC11678130
While targeting BRAF V600E drugs does ameliorate the overall survival, the long-term effectiveness of the available therapeutic options is limited by a reduced clinical efficacy and adverse side effects .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "While", "targeting", "BRAF", "V600E", "drugs", "does", "ameliorate", "the", "overall", "survival", ",", "the", "long-term", "effectiveness", "of", "the", "available", "therapeutic", "options", "is", "limited", "by", "a", "reduced", "clinical", "efficacy", "and", "adverse", "side", "effects", "." ] } ]
PMC5925824
High-content molecular analysis of tumor and peripheral tissues collected from these animals reveals a broad spectrum of immune-related intra- and extra-tumoral effects for LY3300054, including previously not described effects on innate immune pathways.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "High-content", "molecular", "analysis", "of", "tumor", "and", "peripheral", "tissues", "collected", "from", "these", "animals", "reveals", "a", "broad", "spectrum", "of", "immune-related", "intra-", "and", "extra-tumoral", "effects", "for", "LY3300054", ",", "including", "previously", "not", "described", "effects", "on", "innate", "immune", "pathways", "." ] } ]
PMC11247842
The previous study showed incorrect calling of flanking genotypes due to the imbalance of the reference and alternative alleles due to the higher copy number of one of the alleles.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "previous", "study", "showed", "incorrect", "calling", "of", "flanking", "genotypes", "due", "to", "the", "imbalance", "of", "the", "reference", "and", "alternative", "alleles", "due", "to", "the", "higher", "copy", "number", "of", "one", "of", "the", "alleles", "." ] } ]
PMC11665584
Ly-6G IHC verified the increase in neutrophils recruited to the PITX1 wound region (Supplemental Figure 13C).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Ly-6", "G", "IHC", "verified", "the", "increase", "in", "neutrophils", "recruited", "to", "the", "PITX1", "wound", "region", "(", "Supplemental", "Figure", "13C", ")", "." ] } ]
PMC11240052
Thus, the circ-0008285 / miR-211-5p / SIRT-1 network may facilitate a novel aspect of the treatment of patients with ovarian cancer.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Thus", ",", "the", "circ-0008285", "/", "miR-211", "-", "5p", "/", "SIRT-1", "network", "may", "facilitate", "a", "novel", "aspect", "of", "the", "treatment", "of", "patients", "with", "ovarian", "cancer", "." ] } ]
PMC11794588
Solvents of the high-performance liquid chromatography (HPLC) grade, such as acetone, methanol, acetonitrile, hexane, ethanol, Deionized water and DMSO were used.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Solvents", "of", "the", "high-performance", "liquid", "chromatography", "(", "HPLC", ")", "grade", ",", "such", "as", "acetone", ",", "methanol", ",", "acetonitrile", ",", "hexane", ",", "ethanol", ",", "Deionized", "water", "and", "DMSO", "were", "used", "." ] } ]
PMC9429973
2021 Mar 17;16(3):e0248430) was analyzed, and the list of DICER1 and DROSHA variants was enriched with disease-specific coding variants retrieved from COSMIC database, and 3’-UTR-variants - from dbSNP.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "2021", "Mar", "17;16(3):e0248430", ")", "was", "analyzed", ",", "and", "the", "list", "of", "DICER1", "and", "DROSHA", "variants", "was", "enriched", "with", "disease-specific", "coding", "variants", "retrieved", "from", "COSMIC", "database", ",", "and", "3’-UTR-variants", "-", "from", "dbSNP", "." ] } ]
PMC11696576
Fatty acids are recognized as a highly relevant source of energy for cancer cells, particularly under nutrient deprivation, and mitochondrial fatty acid oxidation (FAO) is increased in stem cells and cancer-initiating cells.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Fatty", "acids", "are", "recognized", "as", "a", "highly", "relevant", "source", "of", "energy", "for", "cancer", "cells", ",", "particularly", "under", "nutrient", "deprivation", ",", "and", "mitochondrial", "fatty", "acid", "oxidation", "(", "FAO", ")", "is", "increased", "in", "stem", "cells", "and", "cancer-initiating", "cells", "." ] } ]
PMC11092382
They discovered that sophocarpine exerts antiapoptotic effects through p38MAPK/Nrf2 signaling by reducing ROS production, which is potentially regulated upstream by MKK3/6 (Liu et al., 2017b).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "They", "discovered", "that", "sophocarpine", "exerts", "antiapoptotic", "effects", "through", "p38MAPK/Nrf2", "signaling", "by", "reducing", "ROS", "production", ",", "which", "is", "potentially", "regulated", "upstream", "by", "MKK3/6", "(", "Liu", "et", "al.", ",", "2017b", ")", "." ] } ]
PMC9429973
The model followed a cohort of TDT patients, who were assumed to receive an average of 16.8 blood transfusions per year, from birth until death.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "model", "followed", "a", "cohort", "of", "TDT", "patients", ",", "who", "were", "assumed", "to", "receive", "an", "average", "of", "16.8", "blood", "transfusions", "per", "year", ",", "from", "birth", "until", "death", "." ] } ]
PMC11349530
Kynurenine functions as an activating ligand for the aryl hydrocarbon receptor (AhR), a ligand-operated transcription factor.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Kynurenine", "functions", "as", "an", "activating", "ligand", "for", "the", "aryl", "hydrocarbon", "receptor", "(", "AhR", ")", ",", "a", "ligand-operated", "transcription", "factor", "." ] } ]
PMC10969097
Ultimately, these polysaccharides contribute to strengthening the tumour immune response .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Ultimately", ",", "these", "polysaccharides", "contribute", "to", "strengthening", "the", "tumour", "immune", "response", "." ] } ]
PMC3765139
Malignant melanoma occurs in 5% of men and 4% of women in the Western world .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Malignant", "melanoma", "occurs", "in", "5", "%", "of", "men", "and", "4", "%", "of", "women", "in", "the", "Western", "world", "." ] } ]
PMC11657695
It can therefore be hypothesised that the use of a therapeutic target that would not cross the blood brain barrier, limiting the development of side effects.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "It", "can", "therefore", "be", "hypothesised", "that", "the", "use", "of", "a", "therapeutic", "target", "that", "would", "not", "cross", "the", "blood", "brain", "barrier", ",", "limiting", "the", "development", "of", "side", "effects", "." ] } ]
PMC11599565
Figure 5, Panel C (merged channels) and Figure SF10 (RBG decomposition) shows the growth features and the expression of different markers in non-treated OC cells isolated from ascites.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Figure", "5", ",", "Panel", "C", "(", "merged", "channels", ")", "and", "Figure", "SF10", "(", "RBG", "decomposition", ")", "shows", "the", "growth", "features", "and", "the", "expression", "of", "different", "markers", "in", "non-treated", "OC", "cells", "isolated", "from", "ascites", "." ] } ]
PMC11644761
Several intriguing properties of pterostilbene have been reported, sparking interest in its potential use within a personalized nutrition approach to complement conventional pharmacological treatments for neurodegenerative diseases.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Several", "intriguing", "properties", "of", "pterostilbene", "have", "been", "reported", ",", "sparking", "interest", "in", "its", "potential", "use", "within", "a", "personalized", "nutrition", "approach", "to", "complement", "conventional", "pharmacological", "treatments", "for", "neurodegenerative", "diseases", "." ] } ]
PMC11486946
Source data are provided as a Source Data file.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Source", "data", "are", "provided", "as", "a", "Source", "Data", "file", "." ] } ]
PMC10507284
Subsequently, we further focused on investigating the expression of TROAP in STS.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Subsequently", ",", "we", "further", "focused", "on", "investigating", "the", "expression", "of", "TROAP", "in", "STS", "." ] } ]
PMC11758416
For cells containing Dynabeads:i.Mix gently using a pipette.ii.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "For", "cells", "containing", "Dynabeads", ":", "i.", "Mix", "gently", "using", "a", "pipette.ii", "." ] } ]
PMC9429973
Association was evaluated through Fisher exact test.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Association", "was", "evaluated", "through", "Fisher", "exact", "test", "." ] } ]
PMC8759873
Add 1 ml of 75% ethanol to each tube, pop up the pellet, centrifuge at 12000 rpm for 10 min, and discard the supernatant.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Add", "1", "ml", "of", "75", "%", "ethanol", "to", "each", "tube", ",", "pop", "up", "the", "pellet", ",", "centrifuge", "at", "12000", "rpm", "for", "10", "min", ",", "and", "discard", "the", "supernatant", "." ] } ]
PMC11696659
This study was carried out in accordance with the Standards of Good Clinical Practice (GCP), the Declaration of Helsinki, and the Spanish Law 14/2007 on Biomedical Research.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "This", "study", "was", "carried", "out", "in", "accordance", "with", "the", "Standards", "of", "Good", "Clinical", "Practice", "(", "GCP", ")", ",", "the", "Declaration", "of", "Helsinki", ",", "and", "the", "Spanish", "Law", "14/2007", "on", "Biomedical", "Research", "." ] } ]
PMC11724582
In addition, compared with those in the CAF-CM group, the viability of NSCLC cells treated with NF-CM was weakened in combination with NFs and almonertinib, which may be related to phenotypic changes in NFs and CAFs.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "In", "addition", ",", "compared", "with", "those", "in", "the", "CAF-CM", "group", ",", "the", "viability", "of", "NSCLC", "cells", "treated", "with", "NF-CM", "was", "weakened", "in", "combination", "with", "NFs", "and", "almonertinib", ",", "which", "may", "be", "related", "to", "phenotypic", "changes", "in", "NFs", "and", "CAFs", "." ] } ]
PMC9429973
In all patients with HL, in patients with early stage HL, in all patients with NHL, in patients with early-advanced stage NHL, it was found that bone mineral density in PET/CT3 decreased significantly compared to PET/CT1 (respectively p = 0.004, p = 0.049, p =0.001, p= 0.005, p= 0.001).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "In", "all", "patients", "with", "HL", ",", "in", "patients", "with", "early", "stage", "HL", ",", "in", "all", "patients", "with", "NHL", ",", "in", "patients", "with", "early-advanced", "stage", "NHL", ",", "it", "was", "found", "that", "bone", "mineral", "density", "in", "PET/CT3", "decreased", "significantly", "compared", "to", "PET/CT1", "(", "respectively", "p", "=", "0.004", ",", "p", "=", "0.049", ",", "p", "=", "0.001", ",", "p=", "0.005", ",", "p=", "0.001", ")", "." ] } ]
PMC11463018
As shown in Table 4, all five analogues showed potent and much better antiproliferative activity than the positive SAHA and Filgotinib, with IC50 values in submicromolar range.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "As", "shown", "in", "Table", "4", ",", "all", "five", "analogues", "showed", "potent", "and", "much", "better", "antiproliferative", "activity", "than", "the", "positive", "SAHA", "and", "Filgotinib", ",", "with", "IC50", "values", "in", "submicromolar", "range", "." ] } ]
PMC11347429
Some of these studies distinguished mild/moderate infections from severe influenza disease.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Some", "of", "these", "studies", "distinguished", "mild/moderate", "infections", "from", "severe", "influenza", "disease", "." ] } ]
PMC11627060
Modifiable risk factors for cancer development are primarily influenced by environmental factors associated with lifestyle choices .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Modifiable", "risk", "factors", "for", "cancer", "development", "are", "primarily", "influenced", "by", "environmental", "factors", "associated", "with", "lifestyle", "choices", "." ] } ]
PMC9164404
Further semi-quantification via flow cytometry showed that the uptake of Abplatin@Cy5.5 at 7 h was 2.24 times than that at 1 h (Fig. 2B).
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Further", "semi-quantification", "via", "flow", "cytometry", "showed", "that", "the", "uptake", "of", "Abplatin@Cy5.5", "at", "7", "h", "was", "2.24", "times", "than", "that", "at", "1", "h", "(", "Fig.", "2B", ")", "." ] } ]
PMC9429973
One patient dosed at DL3 experienced grade 2 ICANS, time to onset of ICANS was 7 days and lasted for 13 days.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "One", "patient", "dosed", "at", "DL3", "experienced", "grade", "2", "ICANS", ",", "time", "to", "onset", "of", "ICANS", "was", "7", "days", "and", "lasted", "for", "13", "days", "." ] } ]
PMC11705862
For the loading control, anti-β-tubulin (Abcam #Ab6046) was used 1:25000/1:10000 in Quench with Dako goat-anti-rabbit 1:25000/1:10000.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "For", "the", "loading", "control", ",", "anti-β-tubulin", "(", "Abcam", "#", "Ab6046", ")", "was", "used", "1:25000/1:10000", "in", "Quench", "with", "Dako", "goat-anti-rabbit", "1:25000/1:10000", "." ] } ]
PMC8345486
The viability of the spheroids was examined using contrast and fluorescence microscopy.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "viability", "of", "the", "spheroids", "was", "examined", "using", "contrast", "and", "fluorescence", "microscopy", "." ] } ]
PMC11680391
In terms of communication between dairy farmers and dairy veterinarians, previous studies have identified some challenges, with a client group that dairy veterinarians typically regard as “hard to reach” when they are focused on improving udder health on the farm .
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "In", "terms", "of", "communication", "between", "dairy", "farmers", "and", "dairy", "veterinarians", ",", "previous", "studies", "have", "identified", "some", "challenges", ",", "with", "a", "client", "group", "that", "dairy", "veterinarians", "typically", "regard", "as", "“", "hard", "to", "reach", "”", "when", "they", "are", "focused", "on", "improving", "udder", "health", "on", "the", "farm", "." ] } ]
PMC11672142
To confirm the induction of ferroptosis, an activity assay was performed using the lipid peroxidation assay kit (Abcam, #ab118970), which measures the concentration of malondialdehyde (MDA), an end product of fatty acid peroxidation.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "To", "confirm", "the", "induction", "of", "ferroptosis", ",", "an", "activity", "assay", "was", "performed", "using", "the", "lipid", "peroxidation", "assay", "kit", "(", "Abcam", ",", "#", "ab118970", ")", ",", "which", "measures", "the", "concentration", "of", "malondialdehyde", "(", "MDA", ")", ",", "an", "end", "product", "of", "fatty", "acid", "peroxidation", "." ] } ]
PMC10213179
The indicated cells were plated in a six-well plate at a density of 3 × 10 per well.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "The", "indicated", "cells", "were", "plated", "in", "a", "six-well", "plate", "at", "a", "density", "of", "3", "×", "10", "per", "well", "." ] } ]
PMC11786600
Immunofluorescence microscopy images of CD86 (M1 macrophage, red) expression and CD206 (M2 macrophage, green) expression. (
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Immunofluorescence", "microscopy", "images", "of", "CD86", "(", "M1", "macrophage", ",", "red", ")", "expression", "and", "CD206", "(", "M2", "macrophage", ",", "green", ")", "expression", ".", "(" ] } ]
PMC9429973
Methods: A single center retrospective analysis of all patients who underwent a bone marrow study comprising bone marrow cultures from January 1, 2012, through March 1, 2018.
[ { "tags": [ "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O", "O" ], "tokens": [ "Methods", ":", "A", "single", "center", "retrospective", "analysis", "of", "all", "patients", "who", "underwent", "a", "bone", "marrow", "study", "comprising", "bone", "marrow", "cultures", "from", "January", "1", ",", "2012", ",", "through", "March", "1", ",", "2018", "." ] } ]