sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
55eca8c1549e378a950b3d0b5db1e350364c5acecd651b98b6436bb38ba2d8ea | Java | 5,020 | 127 | /*******************************************************************************
* Copyright (c) 2020 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c4fb89b8b2ef1f250ab68deceb24e1293716765cce886ca0cd952534524aca6a | Java | 5,041 | 137 | package jalgs.jfft;
import jalgs.algutils;
public class gabor_filter{
public float[][] kernel;
public int N,nthetas,nphis;
public int[] fftindex1,fftindex2;
public gabor_filter(float lambda,float sigma,float[] theta,float[] phi,float gamma){
N=1+2*(int)Math.ceil(2.5*sigma/gamma);
nthetas=theta.... |
829f17c4b469a0df47749defa4c9e5a21ee3b53b555394931d9d152bac62dd97 | Java | 5,082 | 107 | /*******************************************************************************
* Copyright (c) 2015 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
a99fd2f7c407775666ac5da81ebbfd8b9e4c2849877427717e3b26f9bad5a2de | Java | 5,099 | 108 | /*******************************************************************************
* Copyright (c) 2017 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
ca48b15e9b46155651e42a6ce0f5f6f9b9426778480389d8949a25f90a5d79cf | Java | 5,128 | 133 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
5a14ccd6d152a561de789f48f99462664de14892746687efe6939a9b5aaad7bf | Java | 5,136 | 141 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
eb9f1fa639335d2d67dabaa091f3017c5a7817bc091be55fb3e42c61a16fb3d0 | Java | 5,148 | 127 | /*******************************************************************************
* Copyright (c) 2020 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
fc545f2a223f0a9fb565cbb15d91c8a231e880e38c2259e64bba737f2f4fe01c | Java | 5,154 | 144 | package com.arosbio.services.utils;
import static jakarta.ws.rs.core.Response.Status.BAD_REQUEST;
import java.io.ByteArrayInputStream;
import java.net.MalformedURLException;
import java.util.Arrays;
import jakarta.ws.rs.core.Response;
import org.apache.commons.lang3.tuple.ImmutableTriple;
import org.apache.commons... |
e6cb118d5a201fd160f673f053f3fd905490d3474a9e9a519f5c32542bd1a47d | Java | 5,157 | 129 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b30de450781128f3d0090090396295aa121559a11ec73f06d394dcf215fb3ebb | Java | 5,176 | 142 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2f02cae5e7878b38d89c5065ebb41a009e292413fdc9c587d7eca71e2753d567 | Java | 5,190 | 209 | package jalgs.jfit;
public class ellipse_moments{
public static float[] get_ellipse_moments(float[] image,int width,int height){
// this is a adapted from Bod Rodieck's code in ImageJ (EllipseFitter
// class) that finds the ellipse
// parameters that best match the spatial moments of the Roi
doubl... |
0ef73fd76c223a634986e524a88db3d4d4de6897a3f390c4a3a6402eefb7e84f | Java | 5,196 | 129 | /*******************************************************************************
* Copyright (c) 2015 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
735a6a98cc92ff448cb6c171bf8c594335f3acd5816fcc4a0ec86f3e56527951 | Java | 5,197 | 178 | package jguis;
import java.util.ArrayList;
import java.util.List;
import skeleton_analysis.AnalyzeSkeleton_;
import skeleton_analysis.Edge;
import skeleton_analysis.Graph;
import skeleton_analysis.Point;
import skeleton_analysis.SkeletonResult;
import skeleton_analysis.Vertex;
import ij.IJ;
import ij.Imag... |
4b077549b8ec368e7cb79c6088681b1369378dce1a5c05116551a66b3514a331 | Java | 5,207 | 143 | package jalgs.jseq;
import java.io.File;
import java.util.ArrayList;
import java.util.List;
import jalgs.table_tools2;
public class LaneMerger{
public static Object[] getInflatedFile(String lane1path){
List<List<String>> lane1=table_tools2.getTableFromFile(new File(lane1path),",",false);
String[] c... |
86ee2d381cf08f0bb6314434a3e04c011da323e7065393b2d55b78164d86a33c | Java | 5,210 | 195 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2f1e2bdc70d14c91c0bff97b5eab15f58ba73eed1d82ae9cd75f26892a2fb6dd | Java | 5,212 | 188 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c659361d899a34013bda06a2cde14f180a3eeeccacc4fed23bec8ff238c0fc11 | Java | 5,229 | 112 | /*******************************************************************************
* Copyright (c) 2017 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
dcd291aae34ac348978500158e4bd09ed015058b14602f0289b524a1021e7fde | Java | 5,238 | 161 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
787c7085d5cd4514c803c301572d52bcbc72950580bd63b7d5f661279efbf322 | Java | 5,244 | 176 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2bd620821d55d6ab47aade80e87ae5a3834978ea3da8daf8861926a796f29ada | Java | 5,319 | 164 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
16328b959f502a2839e304053766055b8afd6a696412c4c2761c64bde021130c | Java | 5,328 | 162 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
901ea80a6a5d42fa266abef22d866e35528cf63003878075c4f84930e2309b88 | Java | 5,351 | 159 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
f178d60464ff1b74e46a4278add0a4c93ae95116a4b8c75f8d0613c4d48b5130 | Java | 5,385 | 178 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9856e6d871c0f379c70f74248d4580cbbc99888c2dc1120d59c2183c34d8bbdb | Java | 5,414 | 145 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
22029f31793a66b654409f23887572d6be5a08e7518adb814edb3df672cef79a | Java | 5,442 | 181 | package org.micromanager.explore;
import java.awt.Color;
import java.util.ArrayList;
import java.util.LinkedList;
import java.util.List;
import java.util.prefs.Preferences;
import mmcorej.CMMCore;
import mmcorej.StrVector;
import org.micromanager.acqj.internal.Engine;
import org.micromanager.acqj.util.ChannelSetting;... |
3ff69e0aaef11c780724a53770aac67cf44f4bcec7cb846a5331e33aadecc93e | Java | 5,442 | 182 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
30be02853e6fdc908a00a83a27d1840f5381e4e20abd8caf62112d4de9d24cc9 | Java | 5,449 | 162 | package jguis;
import ij.IJ;
import jalgs.jdataio;
import java.io.BufferedOutputStream;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStream;
import java.util.Calendar;
import java.util.Date;
import java.util.GregorianCalendar;
import java.util.Lis... |
b64af21125dda70dce21f10c322b217e3d21ef6b484469bf9fd6b80f4f24216d | Java | 5,460 | 130 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
bb82d1908137967cea0f9bbed92cb3ae952dc7f625954c9d80adc711b6e0557d | Java | 5,471 | 151 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
125e37b78b84d996242c45e2031437a6fbb1ec296bd8bac6f7dc2b90de97b040 | Java | 5,473 | 192 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
6c896f25eb8d269e7df614f0acbe3d11da1318a1e6372f63df6ddf1243e4b1f2 | Java | 5,473 | 192 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
eda60928c0b6d6109f1f1c16c541cb9d9f519786b5892959144c52c2fdfa05cf | Java | 5,473 | 192 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
487ec3b169ca76d3849b5a6dd8c255879186fbd3ada7d3d30b72848d1296203b | Java | 5,522 | 168 | package jguis;
import java.io.File;
import java.io.IOException;
import ome.units.quantity.Length;
import ome.units.quantity.Time;
import ome.units.UNITS;
import ij.ImageListener;
import ij.ImagePlus;
import loci.common.Location;
import loci.common.RandomAccessInputStream;
import loci.formats.CoreMetadata;... |
1e7ab2251cf0742f6827ba44a3b2f1326f9f4ec8e614d9d443c4753925b185b3 | Java | 5,536 | 154 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c72648279c3f5adc87c547db1ef9a00f10eb789f521f0aaf0ca7d630cc443f25 | Java | 5,546 | 150 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
40edb24f9182ef85e4d2cd141dda0250f60f407306d6f9c808120c1898b1a980 | Java | 5,570 | 155 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
7ccf064ad1bea38db78ebfa863b2390a64dfe6c18f32ec66b55516cf4f232999 | Java | 5,602 | 174 | ///////////////////////////////////////////////////////////////////////////////
// AUTHOR: Henry Pinkard, henry.pinkard@gmail.com
//
// COPYRIGHT: University of California, San Francisco, 2015
//
// LICENSE: This file is distributed under the BSD license.
// License text is included with the... |
74cccacaa5c591d2a63bc22f06afc8ce632160c927bae21939d8ece3771c7697 | Java | 5,626 | 186 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
fcf2782a2b7f03a5091a555f245248651b362798555cdd50cf58df0d9c812201 | Java | 5,629 | 209 |
package ca.bccrc.iao;
import java.net.URI;
import java.net.URISyntaxException;
import java.text.NumberFormat;
import java.util.ArrayList;
import java.util.HashSet;
import org.semanticweb.owl.apibinding.OWLManager;
import org.semanticweb.owl.model.AddAxiom;
import org.semanticweb.owl.model.OWLAnnotation;
import org.... |
d2279f297cd211ca4f786c8422a69a086628e8678da9dc36df822122d19b7852 | Java | 5,637 | 157 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
7a8c7d4c3098204f2f589eb13b3d917b388bbd284ef07d33ee78fee6e8940f02 | Java | 5,640 | 161 | /*
* To change this license header, choose License Headers in Project Properties.
* To change this template file, choose Tools | Templates
* and open the template in the editor.
*/
package org.micromanager.remote;
import java.util.concurrent.BlockingQueue;
import java.util.concurrent.ExecutorService;
import java.u... |
480d23506852bdd3c96a8b8cdb9f06ba9fff70a689e66ce06cc562a68da2ae3b | Java | 5,645 | 206 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
17d6549d31e8ab460f2c2c172925c691fd93a6467e3bcb821236e84aba4b3427 | Java | 5,649 | 177 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
39d8aeeef2e0d491db3ac14db3a71f50fd215e75dc55d2bfcf41dd59dd251237 | Java | 5,664 | 170 | /*******************************************************************************
* Copyright (c) 2015 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
80a953bf1e957243fb6b7cd9264c1f53540f065c8655847a30303e7a0633f9d0 | Java | 5,670 | 196 | package com.arosbio.api;
import static io.restassured.RestAssured.basePath;
import static io.restassured.RestAssured.baseURI;
import static io.restassured.RestAssured.get;
import static io.restassured.RestAssured.given;
import static io.restassured.RestAssured.port;
import static io.restassured.RestAssured.reset;
imp... |
70f1ca3d2eda9eb3eed22b711c083d67f8036a3618c5747ee6a2e0e2f54947ba | Java | 5,671 | 168 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
6cd27e746ad1c9a2822a25f57ab9dab97c70e12732d8c0b42dbac6743c49f0ae | Java | 5,699 | 141 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
5cf3ee0ebaeda25984a070eb14be6de4df8a6433a3f306baaa7227fb6e213db8 | Java | 5,710 | 196 | package com.arosbio.api;
import static io.restassured.RestAssured.basePath;
import static io.restassured.RestAssured.baseURI;
import static io.restassured.RestAssured.get;
import static io.restassured.RestAssured.given;
import static io.restassured.RestAssured.port;
import static io.restassured.RestAssured.reset;
impo... |
c8a1e43e81da0bdc2c47375feb5a0613af6df4b0832c0f05f99e0337bc46425e | Java | 5,734 | 148 | package jguis;
import java.io.BufferedOutputStream;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStream;
import ij.IJ;
import jalgs.algutils;
import jalgs.jdataio;
public class NpyFileWriter{
public static boolean writeArrayAsNpy(Object arr,St... |
2ec72255250acb66451651fee81af3299392701e0ca4750bae616cefaf55efb0 | Java | 5,752 | 142 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
7cdc0bdf760a0b319430a7aaaa0fa6306c8651cd924672cc37bace9f3cd88318 | Java | 5,767 | 180 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
32a0099042ab924681b198d40c56ddbc579f82925e2f5fc3f0df6f0aaf30a760 | Java | 5,776 | 188 | package jalgs;
import java.io.BufferedWriter;
import java.io.File;
import java.io.FileWriter;
import java.io.IOException;
import java.nio.file.FileVisitResult;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.nio.file.SimpleFileVisitor;
import java.nio.file.attribute.Basic... |
d56e053639768b98baacdb343116c5135a0e9b47035db2c9ff161655af116b58 | Java | 5,782 | 155 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
73f90129ba0181e21c1c71dfff6b00f1b1871dc101d1fd5a565ae4c44872e2b0 | Java | 5,788 | 160 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
367c62d44fef0b597a88b38d15c4d16c8457684ece2cacf65adc5490d62a1280 | Java | 5,793 | 135 | /*******************************************************************************
* Copyright (c) 2015 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2bfa2330a1452a976d35bb4b5c3159f5b329ed02164bcccd8962f68af6e04fe1 | Java | 5,803 | 154 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
e4d2df3adb45133694203235025916a1e6aaa7a8357a40ed04b1be0c5b07f2d8 | Java | 5,865 | 157 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9178939c40186e86dad33c969f0dd5a200fd5937b4e82b320d2cd59be38da565 | Java | 5,876 | 204 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
d6f94f7201efae94ec97de0e8154601d0ad0d9e0a2dc8d2f1fcc89dd4607d664 | Java | 5,900 | 147 | package jguis;
import ij.IJ;
import ij.ImagePlus;
import ij.gui.PolygonRoi;
import ij.gui.Roi;
import ij.process.ByteProcessor;
import ij.process.ImageProcessor;
import jalgs.jseg.binary_processing;
import java.awt.Color;
import java.awt.Rectangle;
import java.util.ArrayList;
import java.util.List;
im... |
185f38dd6dd93a7912e0c5ceae6bc269943a30e5f87371e467aefb5679a41f99 | Java | 5,903 | 141 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
6be0f7d5a88cd50a7d00d26d422cde0d42bb1dbc5993d8c292ef4a5d2e2bf0cd | Java | 5,926 | 144 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
32369957dc3c601aac5125e774fc4c07a27e24973b5dffa586bebbbe0ebd1cbc | Java | 5,935 | 169 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
f581d7eb03641f8d2ca4f20900e85746ac85039572e9a8a98ab408eef9968bd9 | Java | 5,939 | 163 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
ad0ca6a38b2fdb904416e36511c252c53e6a0946c659e268a44ca56f77d3311a | Java | 5,997 | 176 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
0bddf03f2dc1b834d9c5f1f2ba91d52276bab70e4e4da84921fe9809b823ceec | Java | 6,005 | 178 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
1d92d4f31ccf4f7558ad941f6571a905106c292ee9295e216a29a70000ec741e | Java | 6,021 | 168 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
8b8f3f1c4f64ebd41c1e15b614a0258e18a08135cfaff8cb9d6e434365649a30 | Java | 6,035 | 138 | /*******************************************************************************
* Copyright (c) 2019 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b690f0f95d92d8e2919e306dc123a307ac4708b79bd9d5890d1edd6d7abf2155 | Java | 6,052 | 185 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
4dd02505117a77249730311c6d967c865e9594eb274d1f64a595eac6a465778e | Java | 6,110 | 274 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
244097047e1d894bff86567738f6adb5b9e3e61c89696a8f0f1f4ecf4d0f2da2 | Java | 6,117 | 158 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
820089b96855b2e470662ebe6aff267f3a7b98a8eb33da4c08dcc35d7b2f8277 | Java | 6,129 | 215 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
14532657056d5d694393879209ab62bdddc9fa1c9bc4d0d32c09bafab8227f84 | Java | 6,148 | 154 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9c35c7df695727653b6e645b51261493740803a7b4f1ccf08e66a9ed579443d3 | Java | 6,162 | 170 | /*******************************************************************************
* Copyright (c) 2018 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9d377a92037ba2185e2bf6c9ba3e5a1fc807d099d15f3627e0f21e5e9b91a718 | Java | 6,259 | 188 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
485b1490d89737c1e6988949c0495c1fee0e0369de498bf07245871a694c200d | Java | 6,293 | 156 | package astar;
import java.util.*;
import java.util.concurrent.ExecutorService;
import java.util.concurrent.Executors;
import java.util.concurrent.Future;
import java.util.stream.Collectors;
import java.util.stream.IntStream;
public class MainSearch {
private final Category[] categories;
private final AStar... |
7d1bcbe80874762f74324318981b51f5eb7c469ae9542087b2d5b5ab54a69424 | Java | 6,317 | 194 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
dd7d85de33b254ea9ed81e536774938be200de9d1e351d8567d4638792eef242 | Java | 6,346 | 161 | package org.micromanager.remote;
import mmcorej.CMMCore;
import org.micromanager.acqj.internal.Engine;
import org.micromanager.pyjavaz.ZMQServer;
import javax.swing.*;
import javax.swing.plaf.ColorUIResource;
import java.awt.*;
import java.io.UnsupportedEncodingException;
import java.net.URISyntaxException;
import ja... |
f9a4d74734a9579ce3aa098d651f8e541d6377fd5fdf0c5a57e21da6ad806791 | Java | 6,349 | 184 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c20a747cccadf922b547aed35b1b593df3bf6214f11503af9bce20cb5fd490f4 | Java | 6,353 | 173 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
0814e1214864355c33694134a7c874033672e33110052e0647af3a5829e2d331 | Java | 6,359 | 231 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
ba353289ca251cd6b2e5e09e6ea13dbbfe01232891f2d405cf5b6a78f9c9d4c1 | Java | 6,377 | 164 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
30378a4fae9c84a02be8f264da36d147e7c702a1b21d29a76339375806c4551a | Java | 6,397 | 196 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9fb211b6c737c92d74ad7c3e8985511d10cd1647ed98efcf1d7bbcd36438aadc | Java | 6,458 | 210 | package com.arosbio.api;
import static io.restassured.RestAssured.basePath;
import static io.restassured.RestAssured.baseURI;
import static io.restassured.RestAssured.get;
import static io.restassured.RestAssured.given;
import static io.restassured.RestAssured.port;
import static io.restassured.RestAssured.reset;
impo... |
bc7cb307360b0c5afe176da46345147bf5af3786819c8f07780351fcace3e9e5 | Java | 6,467 | 212 | package org.micromanager.explore.gui;
import org.micromanager.acqj.main.XYTiledAcquisition;
import org.micromanager.acqj.util.xytiling.CameraTilingStageTranslator;
import org.micromanager.explore.ExploreAcquisition;
import org.micromanager.explore.ExploreAcqUIAndStorage;
import org.micromanager.ndviewer.api.CanvasMous... |
0ded1f1e811aa4ab1d082a94166b3129718a6112ef782e8b9dd9592fccdde48b | Java | 6,516 | 217 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
efae20baeafdd41d33574b32fa22ac5fc4a6510eaf4240b459ad79ad42deb705 | Java | 6,523 | 178 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
839ca418145fdaa53059c4f357a638a8c3c33f5a91b78bc752bb93e486c86d58 | Java | 6,524 | 196 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
141477ede7617246bf8efae7b7537d3981051be7e3ec8ec9171ea90ac8c05199 | Java | 6,548 | 212 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
fc615ce5bb5232fab5a7ab78b0ab607f850e22ea7f1a96ca2d67e3b3194cd8da | Java | 6,550 | 222 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
04eaa60c808005d856ae305bebbe55681341414ee7c08b446baddd2e7870f00f | Java | 6,665 | 178 | package jalgs.jfit;
import jalgs.gui_interface;
import jalgs.jstatistics;
public class fit_assym_gaus implements NLLSfitinterface_v3{
//params are 0baseline, 1amp, 2avgstdev, 3stdevratio, 4xc, 5yc, 6angle
public int xpts,ypts;
public int nfit;
public double[][] constraints;
public double[] params;
... |
089caeab85c444796f9b7d9c7440167cde368d1c22046b973a87615ba7e801c0 | Java | 6,669 | 168 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
0d9633c540258b67ca26a3da7aed3d523c422a2e9128ae25777b371badc5f383 | Java | 6,674 | 175 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
e5b2c128842f6cdf76932ce10bd0256fe67e8175a5e9d2cd0548e3125c36769a | Java | 6,687 | 145 | /*******************************************************************************
* Copyright (c) 2014 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
6ff4d45c426e5927567898876226d44e8f94f91bc202c19b19156dd1ca0afd3b | Java | 6,702 | 185 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
32e2bb5c0752fe72b232e81766574a81c9f9c005990e344bacda8bf3dc5cbf3c | Java | 6,712 | 186 | package jalgs.jseq;
import org.biojava.nbio.alignment.Alignments;
import org.biojava.nbio.alignment.Alignments.PairwiseSequenceAlignerType;
import org.biojava.nbio.alignment.SimpleGapPenalty;
import org.biojava.nbio.core.alignment.matrices.SimpleSubstitutionMatrix;
import org.biojava.nbio.core.alignment.matrices... |
44aca3da122b6811a87d23ffbdb26db7797841a3baf0d93c618b856cd60f18a4 | Java | 6,745 | 159 | package jalgs.jfft;
import jalgs.jstatistics;
public class jwavelets{
public static String[] coefs={"2","4","6","8","10","12","14","16","18","20"};
public static double[][] coef={{0.707106781,0.707106781},
{0.482962913,0.836516304,0.22414387,-0.129409521},
{0.332670553,0.80689151,0.4598775,-0.1350... |
0e67ac1e0f414cf3a113d0667804981307f40bde6390fd2534a4a9952b3e3a3b | Java | 6,776 | 188 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
214a6feb10506b15e2eb810713dd65b846b1f29b967afb0516c4a34fd5503e57 | Java | 6,784 | 227 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
3377375a4e1029813537a48efe7cb78fd738abb863d523f8773255061096a2f0 | Java | 6,785 | 190 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
cd95ee7253fb339f1fd83df6d80f861f8c305b9be6584bc7b03d26a22491a046 | Java | 6,814 | 212 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
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