sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ef73706f84ee167e63fb541e96b113283bc4f36d6209954faede9bbfc784c640 | Java | 6,848 | 171 | package com.example.fridgesnap;
import static android.view.View.GONE;
import androidx.annotation.Nullable;
import androidx.cardview.widget.CardView;
import androidx.core.content.ContextCompat;
import androidx.fragment.app.Fragment;
import com.google.gson.Gson;
import com.squareup.pica... |
d21c921ddd2c99a4aa8fb1c2c9b9cb97986e041e32ee4dba752b3762f487fed7 | Java | 6,854 | 176 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c006753542bdd27fb4afea5894827b66787a4a470952612c057a460979d934a5 | Java | 6,862 | 259 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
8f590203985cde8493861b5864c59c6c6b00a283c869ae23b2fd581a8fc97e45 | Java | 6,864 | 192 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2e65273bd9058d548786b172b37c6b2065eb89b26d6c980cc9dbdf64606276ea | Java | 6,888 | 194 | package org.micromanager.explore.gui;
import javax.swing.*;
import javax.swing.table.DefaultTableCellRenderer;
import net.miginfocom.swing.MigLayout;
import org.micromanager.explore.ChannelGroupSettings;
import org.micromanager.acqj.internal.ZAxis;
import org.micromanager.explore.ExploreAcquisition;
import org.microm... |
da5967e6729dc4c113fe59529274bdae972791ffccded4b61cda7eb8188c30cd | Java | 6,899 | 194 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
f15753f41d35cb9de0b51ae2c2fe85134a16311756cb9918bbfb1fc17bdd70f7 | Java | 6,907 | 194 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
f131d13f94b94ebf145c7beeb3940114f0fa9242b14ff25f4bc9dc642f9578be | Java | 6,913 | 199 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
055fe0b0ed80d7d351f625edfa79b6aacf3ac78ef9ec06f4d8df70162098a17b | Java | 6,948 | 183 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
9450156155d2c98645840d9abe6d4bb12a6844069b8888aa03ec9dbf353b47c9 | Java | 6,995 | 274 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
02300f1d031bdd57e9c2497658fdc32644a9d3f0750916c09448cd1efae55adf | Java | 7,009 | 215 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b27a34a868206a90df5d18c51776235d9dc92a423f10b908fdf344a84f587cbf | Java | 7,149 | 196 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
3a9e4b90694d7a8ac38c03026ef4d57445441db02c1a055d72deeda24ae992b2 | Java | 7,160 | 260 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
015815e8ccde10820c56308345766f53fca45626aad9c72debf41ea7a2b0c7ef | Java | 7,197 | 218 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
ad8b0b704556ed499085fe3a7f72725a618fa709cc5c80348d13d58905362013 | Java | 7,218 | 211 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
6247afc617633074488b8f0e2012bcad52aff66be5f892a9383ffa33a391c650 | Java | 7,236 | 210 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
538627e0640586a90416fc46b10633b5c405237e872bb579d5915dfcbfc2fce1 | Java | 7,253 | 209 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
412fd3307f00737a980139ba79b72f8d9fa091b25c4a8a82e381f743e8e9892f | Java | 7,302 | 213 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
5ea5a18a66605908b6c74f19c14124f513aa032924f5255509bc79353c660f91 | Java | 7,326 | 279 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
deae88ae5d12305134587504ca369368a28e8a66af430a24ad0d61c18ac89bc8 | Java | 7,356 | 224 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
59a337950305c4b38ea7d431228e7ed1a7fa4d9ee7e764a7c4ceee3bcda87b5a | Java | 7,427 | 226 | package jguis;
import jalgs.jdataio;
import ij.IJ;
import Imaris.Error;
import Imaris.IDataSetPrx;
import Imaris.ISpotsPrx;
import Imaris.tType;
import com.bitplane.xt.*;
public class test_imaris_XT{
public static float[][] getSpotsTraj(boolean pixunits){
//ImarisLib vImarisLib=new ImarisLib();
B... |
f7241f35be6502f59712f8ba6b2747fdc786ca948de9cdb12bc9acbd16775ff6 | Java | 7,433 | 261 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
5d360a336090b001dc1be884bbf49ddc1004403f9e4fd0ef9532664ef7b2e9cf | Java | 7,488 | 214 | package astar;
import java.util.Random;
import astar.Combinator.RuleType;
public abstract class SyntaxTreeNode implements Comparable<SyntaxTreeNode> {
private final Category category;
final double probability;
final int hash;
final int totalDependencyLength;
private final int headIndex;
priv... |
b62d55ae2f065068f8c5d06b79a264c694fbc6e650659b3e9b55da89ae0e25bf | Java | 7,512 | 287 | package jguis;
import ij.IJ;
import ij.ImageStack;
public class EDT{
/*
* The idea of the Euclidean Distance Transform is to get the
* distance of every outside pixel to the nearest outside pixel.
*
* We use the algorithm proposed in
@TECHREPORT{Felzenszwalb04distancetransforms,
author = {Pedro F. Felze... |
8008faaca765509f779e5e9bb24deff7ee853e0ba0202288aab6ab25f387999e | Java | 7,515 | 204 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
1ccf28659578f0522e70dc1651d8759d4ede0013dd783e086baf46fb48eaa3e5 | Java | 7,525 | 186 | /*******************************************************************************
* Copyright (c) 2015 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
887344e089fa87888d87fb999a3ee0d5a32be734cec16ee4215ccf80d010fbdf | Java | 7,526 | 209 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b733134da673d8ba59187d8bc0d1bfa67d88800a6b07d406a1c480fbe1043a6f | Java | 7,603 | 243 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b1a567d321da2399d8dcf357adb40dbdbdae80d72ae839dcae18d04af5a70ed4 | Java | 7,606 | 176 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
8352aa8c13c09976fe72548bb711ecdf31ed3188790dce4edcb5ee8fbc71552f | Java | 7,614 | 254 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2665c704c67f35d59a0bda53168fc3d6187dc1c4129144b098e236f2f3457edd | Java | 7,669 | 222 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
a23f9ab1156bd6b205897698ba7c9afc10d8f5cb1f53dd4999ee890ab857953b | Java | 7,697 | 167 | /*******************************************************************************
* Copyright (c) 2014 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
7b216a2de83f43e133c9fcd66e346f2e5c5054689d7e7695407d585144f4709b | Java | 7,719 | 215 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
e7d9f73cbae4fef6a8310d383f5885faf186dbd1875f1bc48942e2efbd2e8ead | Java | 7,727 | 210 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
5be48fac9538a7118942dc74e0316eba924d7df1224378a5371e25d7b1ca90be | Java | 7,728 | 220 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b4b340aff76e8f0c629699f94a072e9e8bfa3d4b7bac2c6199b4f40deda94f5f | Java | 7,787 | 172 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
376e04e504233455295114b1ff1a9422255f815fc481b6e4938d43f4b58c080c | Java | 7,843 | 218 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
935542eff593b9ada88c58bac17364f42fec8463538c8125bef1718024e349bb | Java | 7,863 | 238 | package jalgs.jfit;
import jalgs.matrixsolve;
public class jreg{
//uses the kabsch algorithm
public Object[] rigid_body_fiducials(float[][] f1,float[][] f2){
// start by calculating the centroids
float[] centroid1=centroidND(f1);
float[] centroid2=centroidND(f2);
int ndims=f1.length;
if(ndims... |
6a9ece957f456bc917d3a06751e777d0e75a84d6a9e06a4795498760ac13cefe | Java | 7,879 | 282 | import ij.*;
import ij.plugin.*;
import ij.process.*;
import ij.gui.*;
/*
* The idea of the Euclidean Distance Transform is to get the
* distance of every outside pixel to the nearest outside pixel.
*
* We use the algorithm proposed in
@TECHREPORT{Felzenszwalb04distancetransforms,
author = {Pedr... |
0844e0db5dfad5a07e5926db4530d088a4b620a2d0ca147b68bfc1a89a46a040 | Java | 7,898 | 291 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
dea81ebce40f3bf18fe4dd8f79d9c6185d3581447733e15023b31514f4c4864f | Java | 7,942 | 229 | /*******************************************************************************
* Copyright (c) 2015 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
48cc24052ac56788ed3cee5df7d542aa38c7df56e47807d83f46b3d5711cb615 | Java | 7,969 | 284 | package jguis;
import ij.IJ;
import ij.ImagePlus;
import ij.ImageStack;
/*
* this code was modified from fiji.process3d.SEDT.java
*
* The idea of the Euclidean Distance Transform is to get the
* distance of every outside pixel to the nearest outside pixel.
*
* We use the algorithm proposed in
@... |
ee413c5374b961479a1b2000e26b8d02424833295ad05b392f52b28ca992d7d4 | Java | 8,008 | 166 | /*******************************************************************************
* Copyright (c) 2017 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
4e467b6fbe9ebe417a528906d42dd33256412a6f30f60240e233e2f2e44f69f6 | Java | 8,070 | 289 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
64e0cf9a0e5ceed84d3f4368aa2d898a4fa2ef183da6685d51896d7889185c21 | Java | 8,143 | 291 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
80c9212b64349eb1f77ff25a5ac4c46cfc8c3bb0d5c681b4918f4dbebfcb8554 | Java | 8,152 | 216 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
8c0f8f22ea5c89542a4fde7767187b151c5429c39dac78a2edb72c18d8f764f8 | Java | 8,164 | 231 | package jguis;
import java.io.IOException;
import java.util.Map;
import java.util.Set;
import com.jmatio.io.MatFileReader;
import com.jmatio.types.MLArray;
import com.jmatio.types.MLNumericArray;
import ij.IJ;
import jalgs.algutils;
import jalgs.jdataio;
public class mat_file_reader{
public stati... |
72fc8cf98c51326c5705b8e8e73376ca68464b896a6f65de100fe9a4b0375371 | Java | 8,230 | 218 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
f5d17ca3e283d14452de5a269149a46a34bf00c7b9136f64f5b8668176290703 | Java | 8,255 | 226 | package jguis;
import java.awt.Color;
import java.io.File;
import java.util.concurrent.ExecutorService;
import java.util.concurrent.Executors;
import ij.IJ;
import ij.ImagePlus;
import ij.process.LUT;
import jalgs.algutils;
import jalgs.jdataio;
public class batch_concat_sub_files {
//this class batch processes scr... |
3f2695ec52fd5cb2e5e859029135e899f3847f9840c8e01cb4815e49a35c3c20 | Java | 8,280 | 248 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
95d331af07b5b1413cadc1541c57b0945b48acbfb04e599810bc0728d02736c8 | Java | 8,291 | 265 | package org.micromanager.remote;///////////////////////////////////////////////////////////////////////////////
//PROJECT: Micro-Manager
//SUBSYSTEM: mmstudio
//-----------------------------------------------------------------------------
//
// AUTHOR:
//
// COPYRIGHT: University of California, San ... |
4129f6223d888833e02dfcea3a0d2ed248c0fd91c6ff0658076ce57ff5723954 | Java | 8,308 | 272 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
20b3599ee635044fd86c40bc86ecd13ec0a1122d1b60f0ec57f65bdf78c06791 | Java | 8,358 | 312 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
59efc12b45ae9ac31fccc6fb6a7a7c66829f915e77b58da25f55b4462241a6fb | Java | 8,361 | 171 | /*******************************************************************************
* Copyright (c) 2014 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
e599c4aa10407c8eaa6daea0287bbda364cb9a30d4ce430920f7791bf7571faa | Java | 8,361 | 224 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
37ef76dce426a4253d6d0a6270a2834c25de4416006e30a7ab9fe22b45eb218e | Java | 8,400 | 274 | package jalgs.jsim;
public class sim_sequences{
//here we simulate DNA or protein sequences
//for DNA, 0,1,2,3 are equivalent to ATCG
//for protein, 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19
//are equivalent to AVLIMFYW CGP STNQ RHK DE
rngs random;
int basisSize;
public static String nucnames="... |
87f00e863876d54b0e220ebf655c4f97f9d170d83caa84376783b965bf5532f6 | Java | 8,431 | 276 | package jalgs.jseq;
import jalgs.jsim.rngs;
public class sim_sequences{
//here we simulate DNA or protein sequences
//for DNA, 0,1,2,3 are equivalent to ATCG
//for protein, 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19
//are equivalent to AVLIMFYW CGP STNQ RHK DE
rngs random;
int basisSize;
publ... |
fcb78b51722e61dd6a563d749020c0ca1727e2ae6521b606f946424f8176f3c0 | Java | 8,457 | 259 | package jguis;
import ij.IJ;
import ij.io.RandomAccessStream;
import jalgs.jdataio;
import java.io.BufferedInputStream;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.io.InputStream;
import java.util.ArrayList;
import java.util.List;
public... |
ee2ac32fc7c7386c593514a78cb9f117d709db671ae01b75ba2e956c28c127ea | Java | 8,567 | 210 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
8d92ae8df1a85b406ef69a0bba3ef9fe152073fa515363ff15014eba1016cb52 | Java | 8,610 | 256 | package com.arosbio.services.utils;
import static jakarta.ws.rs.core.Response.Status.BAD_REQUEST;
import static jakarta.ws.rs.core.Response.Status.INTERNAL_SERVER_ERROR;
import java.awt.Color;
import java.awt.Graphics2D;
import java.awt.image.BufferedImage;
import java.io.ByteArrayInputStream;
import java.io.ByteArr... |
7aa6eb001861e773aeda8657bba6e2f0f546f205947a29909088f10519a8dd22 | Java | 8,626 | 299 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
09e6a84905ca6345ebb28ee87fb76c5d99214ff2691b592bcfa0e5a696705689 | Java | 8,661 | 189 | package jguis;
import java.awt.Polygon;
import ij.ImagePlus;
import jalgs.algutils;
import jalgs.interpolation;
import jalgs.jstatistics;
import jalgs.jseg.findblobs3;
import jalgs.jseg.jsmooth;
import jalgs.jseg.jsobel;
import jalgs.jseg.measure_object;
public class ImageStreamConverter{
public sta... |
4d91a83314e7874414729b79ec593f24d9543d24cb14e9f3a8b46b7cd75e1810 | Java | 8,667 | 322 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
280fbbb55f7d52fe2f7df76974f09fa0ba8b45ccc9c108e449ac0de4a0be1878 | Java | 8,719 | 224 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
eba46ece15ad70cbbdde9879a25942dede66c202a0276c5e71e1301e9c4c5858 | Java | 8,733 | 240 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
77b61735b0d1ed20afe46df7cc5ee19025f8c03159fb6d2c9be6fe77e5c5bc76 | Java | 8,751 | 247 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b4fb512b7952fa160422960028cab0afa610dee7d30334e570856d25199b98e1 | Java | 8,815 | 311 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
fd33a042db7ef9384b5439c5e9b09941827f390c491250cb25c22ed48a027e7c | Java | 8,831 | 260 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2b7f49bc5a66bf20b974472aec59473bb324533efa79f6b828794cf723ec7502 | Java | 8,890 | 317 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
4d5838c8e3c19d354e3ac8fb224cebf78a49033683714020f76494a64ecc1533 | Java | 9,047 | 200 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
073229ac9cf7d68df9d8769e273c35502f697bb0affe086274b155ee46d5e092 | Java | 9,065 | 237 | package org.micromanager.explore.gui;
import net.miginfocom.swing.MigLayout;
import org.micromanager.acqj.internal.Engine;
import org.micromanager.acqj.internal.ZAxis;
import org.micromanager.explore.ExploreAcquisition;
import javax.swing.*;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
imp... |
8f13cd26ba69febbbbde9047b436d1a22d3ac2f6172c492412e9a4df49166aff | Java | 9,187 | 196 | ///////////////////////////////////////////////////////////////////////////////
// AUTHOR: Henry Pinkard, henry.pinkard@gmail.com
//
// COPYRIGHT: University of California, San Francisco, 2015
//
// LICENSE: This file is distributed under the BSD license.
// License text is included with the... |
7bfe5eaf5ffe28cf34f10c7b299ead6feabecfaa059240109cd39761ca17d52a | Java | 9,190 | 207 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
725e4d7fa3de60c9a9223fab65235b2aa5a48173d2d39d09c16e6945a0ac2394 | Java | 9,225 | 202 | /* misc/HmmGlocal.java.
Copyright (C) 2010 Broad Institute.
Author: Heng Li <lh3@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without lim... |
779f6b7ccd7f9dfea9b893d3a8024e08387b8b7ebcfa5033cc45a326a92cd110 | Java | 9,267 | 290 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
5113658deddb893200bf672a2569ee2bee5a6f953e060c38a643c9afa665cb38 | Java | 9,360 | 286 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
72dc2c402beabc97221bad58e27c51b5eb6bad4adc36b00fe88f9a6b38ed703c | Java | 9,388 | 281 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b5b4839d69b90fdfce35ccdb94d9809488ad93bc408d1cbf4abd8e1670818b0f | Java | 9,417 | 206 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
71f214a0453b2b411e7290949309a76080f170f8ff92dec3b5eb05c3c6b72f37 | Java | 9,423 | 256 | /*******************************************************************************
* Copyright (c) 2014 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
5fea55396a3964e7df38d330204a2073b703c6dfff3d5bc346bb99cdab3040f9 | Java | 9,430 | 208 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
91687a4b323ccfa6d2cbaf642ec9faa09bd82fa21c4e1d689bd046a2ed27ddef | Java | 9,438 | 252 | package com.arosbio.impl;
import static jakarta.ws.rs.core.Response.Status.INTERNAL_SERVER_ERROR;
import static jakarta.ws.rs.core.Response.Status.SERVICE_UNAVAILABLE;
import java.awt.image.BufferedImage;
import java.io.ByteArrayInputStream;
import java.io.IOException;
import java.net.URI;
import java.security.Invali... |
bf8aaf8e4b4ebfa2566a315ae71ed3162634da803ddb9fc5fb36263e7c578b21 | Java | 9,533 | 253 | package com.arosbio.impl;
import static jakarta.ws.rs.core.Response.Status.INTERNAL_SERVER_ERROR;
import static jakarta.ws.rs.core.Response.Status.SERVICE_UNAVAILABLE;
import java.awt.image.BufferedImage;
import java.io.ByteArrayInputStream;
import java.io.IOException;
import java.net.URI;
import java.security.Invali... |
67b7d991b2f80d27404c33c92a1f3c50a8ceafef566d764e78102debc1d5fdfd | Java | 9,539 | 221 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
ef2cd70a7951ade87637e48e75b88ef768c7c0f928714ceb5edfb9eb6cf75043 | Java | 9,540 | 288 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
56434932b74e61bedd8ca9185181dd713b8d8975609b9f660adce33509f5a158 | Java | 9,542 | 303 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
ade06d78a2499e5d7bf6e2d32e6327065ce858225803f8d5211738850182ac9f | Java | 9,564 | 376 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9fb1734975e7d560ae6249ca9bfa240ccd56b3c6880f567c3eb44e92200807bb | Java | 9,618 | 274 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
7cb8e9a8f81b4f1c518cd3630e2f6d4c3c02048e6812c529435d4f9a0dfa4242 | Java | 9,690 | 248 | package jalgs.jfit;
import jalgs.*;
public class fit_mixed_gaus implements NLLSfitinterface_v3{
public int xpts,ypts;
public gui_interface gui;
gausfunc gf;
double[][] constraints;
double oldtheta,costheta,sintheta;
public fit_mixed_gaus(int xpts,int ypts,gui_interface gui){
this.xpts=xpts;
t... |
488c51869b7770a299bb688e2c3cdd979be0afe7a719a4b004ca4eb0f1f533d9 | Java | 9,715 | 207 | /*******************************************************************************
* Copyright (c) 2017 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
fbf87cf9ec6b35e1363fb1e54214b2355798c59086abce3ac9e54f9d40c58a51 | Java | 9,788 | 245 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
cd10c8107aa5a888b6661e740d27d82adf5d2437744a78915f0368479d326ab0 | Java | 9,855 | 288 | package jguis;
import jalgs.jdataio;
import ij.IJ;
import Imaris.Error;
import Imaris.IDataContainerPrx;
import Imaris.IDataSetPrx;
import Imaris.ISpotsPrx;
import Imaris.tType;
import com.bitplane.xt.*;
public class ImarisXT_utils{
public static float[][] getSpotsTraj(boolean pixunits){
BPImarisLi... |
187f1f94c45641a6620a6d11e1d48c5deeda01d281df73cce4b20e1527371772 | Java | 9,863 | 270 | package jguis;
import java.io.InputStream;
import ij.IJ;
import java.io.BufferedInputStream;
import java.io.FileInputStream;
import java.io.IOException;
import jalgs.jdataio;
public class import_flowcyte{
/**************
* this version just gets the header info
* @param path
* @return
... |
34b90f635f3608805cbce99e6794d7b8e819e71ed2fb5df24ba8c9528044f6cc | Java | 9,880 | 247 | /*******************************************************************************
* Copyright (c) 2015 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
1ded1446b6a7ab5db9290c364ea032a6c89346882d2e3ebbbebd9070f0b340d6 | Java | 9,921 | 262 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
62ae5c8cf43489c31e0e42f251fa79cd2c406819b5fdfb638815e9b5d720051e | Java | 9,930 | 226 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c8dc482e63063f00ef64613d0a04ea6a8fa7e8f705eb505a56f5318c2bccc307 | Java | 10,028 | 291 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
6a3247041b559056026378e8a11523a5f7912616ff313af1c81840ee6e78c848 | Java | 10,076 | 246 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
67c36fc4f00d40cdfd26b4e60734c654992616acb95eefe9131b308ee7f177eb | Java | 10,111 | 303 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
4b61f34516546043bce081a56ada3ae68f12a3fefe5b53230a8ae88d8f119f36 | Java | 10,157 | 261 | package com.arosbio.impl;
import static jakarta.ws.rs.core.Response.Status.BAD_REQUEST;
import static jakarta.ws.rs.core.Response.Status.INTERNAL_SERVER_ERROR;
import static jakarta.ws.rs.core.Response.Status.SERVICE_UNAVAILABLE;
import java.awt.image.BufferedImage;
import java.io.ByteArrayInputStream;
import java.io... |
82973961d6fc075f3449292419f5a954e649cdbf7d10f8edc23e861a8231dd7e | Java | 10,238 | 344 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
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